Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776402.1| aconitate hydratase, mitochondrial precursor [B... 1136 0.0
Alignment gi|NP_001069059.1| cytoplasmic aconitate hydratase [Bos taurus]. 154 2e-37
Alignment gi|XP_002696712.1| PREDICTED: Iron-responsive element-binding p... 124 3e-28
Alignment gi|XP_001787776.2| PREDICTED: Iron-responsive element-binding p... 124 3e-28
>ref|NP_776402.1| aconitate hydratase, mitochondrial precursor [Bos taurus].
Length = 780
Score = 1136 bits (2938), Expect = 0.0
Identities = 549/562 (97%), Positives = 560/562 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPD GCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGL+CKSQFTITPGSEQIRATIERDGYAQ+LRDVGGIVLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLQCKSQFTITPGSEQIRATIERDGYAQILRDVGGIVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQ+VDVSPTSQRLQLLEPFDKWDG+D
Sbjct: 519 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQQVDVSPTSQRLQLLEPFDKWDGRD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAIN+ENGKANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINVENGKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTI+GLKDFAPGKPL CIIKHPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPADYNKIHPVDKLTIKGLKDFAPGKPLTCIIKHPNGTQETILLNHTF 758
Query: 1623 HETQIEWFRAGSALHRMKELQQ 1688
+ETQIEWFRAGSAL+RMKELQ+
Sbjct: 759 NETQIEWFRAGSALNRMKELQK 780
>ref|NP_001069059.1| cytoplasmic aconitate hydratase [Bos taurus].
Length = 889
Score = 154 bits (390), Expect = 2e-37
Identities = 175/659 (26%), Positives = 277/659 (42%), Gaps = 102/659 (15%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G P + P+VIG +L G+ + D++L + L G G VE+ GPGV +S
Sbjct: 232 GQPISMVLPQVIGYRLVGNPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 291
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR--------ADIANLADEFKDHLVPDP 338
ATI NM E GAT + FP + KYL +TGR F+D
Sbjct: 292 DRATIANMCPEYGATAAFFPVDEVSIKYLVQTGRDKEKVKHIKQYLQAVGMFRDFSDSSQ 351
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV-----GSVAEKEGWP----------- 470
+ QV+E++L + P +GP P V+++ + K+G+
Sbjct: 352 DPDFAQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHND 411
Query: 471 ---------------LDIRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ + I SCTN+S + A +AK+A+ GL K + ++
Sbjct: 412 HKTFIYNNSKFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLSVKPYIKTSL 471
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDR------KDIKKGEKNTI-V 755
+PGS + + G L +G V+ C CIG + I +G+ + V
Sbjct: 472 SPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEAVVEAIVQGDLVAVGV 531
Query: 756 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 926
S NRNF GR +P T A ++ SP +V A AIAGT++ + E + L G++ L+
Sbjct: 532 LSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDI 589
Query: 927 -PDADELPRAEFD---PG--QDTYQHPPKDSSGQRVDVSPTSQRLQLLEP---------- 1058
P DE+ E PG ++ YQ + +P S +L P
Sbjct: 590 WPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALAAP-SDKLYCWNPKSTYIKSPPF 648
Query: 1059 -----FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRG 1172
D K + D +L+ + TTDHIS AG + F
Sbjct: 649 FEDLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNS 708
Query: 1173 HLDNISNNLLIGA---INIE------NGKANSVRNAVTQEFGPVPDTARYYKQHGIRWVV 1325
+ N+ ++ NI N +A + + E V D A Y+Q G+ +V
Sbjct: 709 YGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIV 768
Query: 1326 IGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNK 1499
+ + YG GSSR+ AA P LG RA++ +S+ RIH +NL G++PL + + AD
Sbjct: 769 LAGKEYGSGSSRDWAAKGPFLLGIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLG 828
Query: 1500 IHPVDKLTIQGLKDFAPGKPLKCIIKHPNG-TQETILLNHTFHETQIEWFRAGSALHRM 1673
+ ++ TI + P +K IK G T + ++ T + ++ +F G L+ M
Sbjct: 829 LTGRERYTISIPETLKP--RMKVQIKLDTGKTFQAVMRFDT--DVELTYFHNGGILNYM 883
>ref|XP_002696712.1| PREDICTED: Iron-responsive element-binding protein 2-like [Bos
taurus].
Length = 925
Score = 124 bits (311), Expect = 3e-28
Identities = 162/640 (25%), Positives = 269/640 (42%), Gaps = 85/640 (13%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +LTGS + + + DV+L + L G G VE+ G GV +S
Sbjct: 308 GLPVSLTLPEVVGCELTGSSNPFVTSIDVVLGITKHLRQVGVAGKFVEFFGSGVSQLSIV 367
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANLADEFK---------DHLV 329
TI NM E GA S FP ++ K+L TG +A + ++ K D+L
Sbjct: 368 DRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGFDKAKLESMEAYLKAVKLFRNEQDNL- 426
Query: 330 PDPGCHYDQV--------IEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRV 485
+P Y QV E + H G LAH GSV +
Sbjct: 427 GEP--EYSQVGFKGFQIAAEKQNDIVSIHYEGS-DYKLAH-----GSVV----------I 468
Query: 486 GLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVL 656
+ SCTN+ + +A +AK+A+ GL+ K + +++PGS + + G L
Sbjct: 469 AAVISCTNNCNPSVMLAAGLLAKKAVEAGLQVKPYIRTSLSPGSGMVTHYLSSSGVLPYL 528
Query: 657 RDVGGIVLANACGPCIG------QWDRKDIKKGEKNTI-VTSYNRNFTGRNDANPETHAF 815
+G ++ C C+G + +K+G+ T V S N+NF GR + +
Sbjct: 529 SKLGFEIIGYGCSTCVGNTAPLSEAVLNAVKQGDLVTCGVLSGNKNFEGRL-CDCVRANY 587
Query: 816 VTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEFDPGQDTYQH 986
+ SP +V A AIAGT+ + +T+ L T GK L P +E+ + E + +
Sbjct: 588 LASPPLVVAYAIAGTVNIDFQTEPLGTDPTGKNIYLHDIWPSREEVHQIEEEHVVLSMFK 647
Query: 987 PPKDSSGQRVDVSPTSQRLQLLEPFDK----WDGKD---------------------LED 1091
K+ + ++R LE D WD K +E+
Sbjct: 648 ALKEK------IEMGNKRWNSLEAPDSVLFPWDLKSTYIRCPSFFDKLTKEPVALQPIEN 701
Query: 1092 LQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL-------IGAINIENGKANSVRN 1250
+L+ + TTDHIS AG + ++N L GA +
Sbjct: 702 AHVLLYLGDSITTDHISPAGSIARSSAAAKYLTNRGLTPREFNSYGARRGNDAVMTRGTF 761
Query: 1251 AVTQEFG-----PVPDT--------------ARYYKQHGIRWVVIGDENYGEGSSREHAA 1373
A + F P P T A Y++ GI +++ + YG G+SR+ AA
Sbjct: 762 ANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGIPLIILAGKKYGSGNSRDWAA 821
Query: 1374 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFA 1547
P LG +A++ +S+ +IH+ +L G+ PL F + AD + + ++ ++ +
Sbjct: 822 KGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQFLPGESADSLGLSGRETFSLTFPEELS 881
Query: 1548 PGKPLKCIIKHPNGTQETILLNHTFHETQIEWFRAGSALH 1667
PG L IK G +++ + ++ +I ++ G L+
Sbjct: 882 PGVTLN--IKTSTGKVFSVIASFE-NDVEITLYKHGGLLN 918
>ref|XP_001787776.2| PREDICTED: Iron-responsive element-binding protein 2-like [Bos
taurus].
Length = 925
Score = 124 bits (311), Expect = 3e-28
Identities = 162/640 (25%), Positives = 269/640 (42%), Gaps = 85/640 (13%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +LTGS + + + DV+L + L G G VE+ G GV +S
Sbjct: 308 GLPVSLTLPEVVGCELTGSSNPFVTSIDVVLGITKHLRQVGVAGKFVEFFGSGVSQLSIV 367
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANLADEFK---------DHLV 329
TI NM E GA S FP ++ K+L TG +A + ++ K D+L
Sbjct: 368 DRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGFDKAKLESMEAYLKAVKLFRNEQDNL- 426
Query: 330 PDPGCHYDQV--------IEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRV 485
+P Y QV E + H G LAH GSV +
Sbjct: 427 GEP--EYSQVGFKGFQIAAEKQNDIVSIHYEGS-DYKLAH-----GSVV----------I 468
Query: 486 GLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQIRATIERDGYAQVL 656
+ SCTN+ + +A +AK+A+ GL+ K + +++PGS + + G L
Sbjct: 469 AAVISCTNNCNPSVMLAAGLLAKKAVEAGLQVKPYIRTSLSPGSGMVTHYLSSSGVLPYL 528
Query: 657 RDVGGIVLANACGPCIG------QWDRKDIKKGEKNTI-VTSYNRNFTGRNDANPETHAF 815
+G ++ C C+G + +K+G+ T V S N+NF GR + +
Sbjct: 529 SKLGFEIIGYGCSTCVGNTAPLSEAVLNAVKQGDLVTCGVLSGNKNFEGRL-CDCVRANY 587
Query: 816 VTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPRAEFDPGQDTYQH 986
+ SP +V A AIAGT+ + +T+ L T GK L P +E+ + E + +
Sbjct: 588 LASPPLVVAYAIAGTVNIDFQTEPLGTDPTGKNIYLHDIWPSREEVHQIEEEHVVLSMFK 647
Query: 987 PPKDSSGQRVDVSPTSQRLQLLEPFDK----WDGKD---------------------LED 1091
K+ + ++R LE D WD K +E+
Sbjct: 648 ALKEK------IEMGNKRWNSLEAPDSVLFPWDLKSTYIRCPSFFDKLTKEPVALQPIEN 701
Query: 1092 LQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL-------IGAINIENGKANSVRN 1250
+L+ + TTDHIS AG + ++N L GA +
Sbjct: 702 AHVLLYLGDSITTDHISPAGSIARSSAAAKYLTNRGLTPREFNSYGARRGNDAVMTRGTF 761
Query: 1251 AVTQEFG-----PVPDT--------------ARYYKQHGIRWVVIGDENYGEGSSREHAA 1373
A + F P P T A Y++ GI +++ + YG G+SR+ AA
Sbjct: 762 ANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGIPLIILAGKKYGSGNSRDWAA 821
Query: 1374 LEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFA 1547
P LG +A++ +S+ +IH+ +L G+ PL F + AD + + ++ ++ +
Sbjct: 822 KGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQFLPGESADSLGLSGRETFSLTFPEELS 881
Query: 1548 PGKPLKCIIKHPNGTQETILLNHTFHETQIEWFRAGSALH 1667
PG L IK G +++ + ++ +I ++ G L+
Sbjct: 882 PGVTLN--IKTSTGKVFSVIASFE-NDVEITLYKHGGLLN 918
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,742,719
Number of extensions: 2319363
Number of successful extensions: 11771
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11653
Number of HSP's successfully gapped: 10
Length of query: 598
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 490
Effective length of database: 14,107,870
Effective search space: 6912856300
Effective search space used: 6912856300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014260
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531716.2| PREDICTED: similar to aconitase 2, mitochondria... 1137 0.0
Alignment gi|XP_849166.1| PREDICTED: similar to aconitase 2, mitochondria... 1137 0.0
Alignment gi|XP_858303.1| PREDICTED: similar to aconitase 2, mitochondria... 1122 0.0
Alignment gi|XP_858344.1| PREDICTED: similar to aconitase 2, mitochondria... 1115 0.0
Alignment gi|XP_858265.1| PREDICTED: similar to aconitase 2, mitochondria... 1084 0.0
Alignment gi|XP_858221.1| PREDICTED: similar to aconitase 2, mitochondria... 637 0.0
Alignment gi|XP_538698.2| PREDICTED: similar to Iron-responsive element b... 155 1e-37
Alignment gi|XP_532364.2| PREDICTED: similar to iron-responsive element b... 130 4e-30
>ref|XP_531716.2| PREDICTED: similar to aconitase 2, mitochondrial isoform 2 [Canis
familiaris].
Length = 565
Score = 1137 bits (2940), Expect = 0.0
Identities = 549/563 (97%), Positives = 560/563 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 62
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 63 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 122
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 123 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 182
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 183 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 242
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 243 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 302
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 303 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 362
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 363 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 422
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 423 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 482
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF
Sbjct: 483 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 542
Query: 1623 HETQIEWFRAGSALHRMKELQQK 1691
+ETQIEWFRAGSAL+RMKELQQ+
Sbjct: 543 NETQIEWFRAGSALNRMKELQQQ 565
>ref|XP_849166.1| PREDICTED: similar to aconitase 2, mitochondrial isoform 3 [Canis
familiaris].
Length = 781
Score = 1137 bits (2940), Expect = 0.0
Identities = 549/563 (97%), Positives = 560/563 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 758
Query: 1623 HETQIEWFRAGSALHRMKELQQK 1691
+ETQIEWFRAGSAL+RMKELQQ+
Sbjct: 759 NETQIEWFRAGSALNRMKELQQQ 781
>ref|XP_858303.1| PREDICTED: similar to aconitase 2, mitochondrial isoform 8 [Canis
familiaris].
Length = 807
Score = 1122 bits (2903), Expect = 0.0
Identities = 549/589 (93%), Positives = 560/589 (95%), Gaps = 26/589 (4%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIK--------------------------VKGKCTTDHISAAGPWLKFRGHLDN 1184
LEDLQILIK VKGKCTTDHISAAGPWLKFRGHLDN
Sbjct: 579 LEDLQILIKVSDGGRGTAQGHLQRPRAEDTAQAGQVKGKCTTDHISAAGPWLKFRGHLDN 638
Query: 1185 ISNNLLIGAINIENGKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSRE 1364
ISNNLLIGAINIENGKANSVRNAVTQEFGPVPDTARYYK+HGIRWVVIGDENYGEGSSRE
Sbjct: 639 ISNNLLIGAINIENGKANSVRNAVTQEFGPVPDTARYYKKHGIRWVVIGDENYGEGSSRE 698
Query: 1365 HAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDF 1544
HAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDF
Sbjct: 699 HAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDF 758
Query: 1545 APGKPLKCIIKHPNGTQETILLNHTFHETQIEWFRAGSALHRMKELQQK 1691
APGKPLKCIIKHPNGTQETILLNHTF+ETQIEWFRAGSAL+RMKELQQ+
Sbjct: 759 APGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRMKELQQQ 807
>ref|XP_858344.1| PREDICTED: similar to aconitase 2, mitochondrial isoform 9 [Canis
familiaris].
Length = 777
Score = 1115 bits (2885), Expect = 0.0
Identities = 542/563 (96%), Positives = 554/563 (98%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGK + HPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGK----VRGHPNGTQETILLNHTF 754
Query: 1623 HETQIEWFRAGSALHRMKELQQK 1691
+ETQIEWFRAGSAL+RMKELQQ+
Sbjct: 755 NETQIEWFRAGSALNRMKELQQQ 777
>ref|XP_858265.1| PREDICTED: similar to aconitase 2, mitochondrial isoform 7 [Canis
familiaris].
Length = 774
Score = 1084 bits (2803), Expect = 0.0
Identities = 532/563 (94%), Positives = 545/563 (96%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRA HP ++ RVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRA-----VSRRCHPVPLAA--RVDVSPTSQRLQLLEPFDKWDGKD 571
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 572 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 631
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 632 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 691
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF
Sbjct: 692 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 751
Query: 1623 HETQIEWFRAGSALHRMKELQQK 1691
+ETQIEWFRAGSAL+RMKELQQ+
Sbjct: 752 NETQIEWFRAGSALNRMKELQQQ 774
>ref|XP_858221.1| PREDICTED: similar to aconitase 2, mitochondrial isoform 6 [Canis
familiaris].
Length = 564
Score = 637 bits (1643), Expect = 0.0
Identities = 307/317 (96%), Positives = 314/317 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR +IA LADE+KDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREEIAKLADEYKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVAEVG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVAEVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLR+VGG+VLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLREVGGVVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
D KKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DTKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRA 953
GKKFKLEAPDADELPRA
Sbjct: 519 GKKFKLEAPDADELPRA 535
>ref|XP_538698.2| PREDICTED: similar to Iron-responsive element binding protein 1
(IRE-BP 1) (Iron regulatory protein 1) (IRP1) (Ferritin
repressor protein) (Aconitate hydratase) (Citrate
hydro-lyase) (Aconitase) [Canis familiaris].
Length = 889
Score = 155 bits (392), Expect = 1e-37
Identities = 162/590 (27%), Positives = 251/590 (42%), Gaps = 99/590 (16%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G P + P+VIG +L G+ + D++L + L G G VE+ GPGV +S
Sbjct: 232 GQPISMVLPQVIGYRLLGNPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 291
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD--------IANLADEFKDHLVPDP 338
ATI NM E GAT + FP + KYL +TGR + F+D P
Sbjct: 292 DRATIANMCPEYGATAAFFPVDEVSIKYLLQTGRDEDKVKRMKKYLQAVGMFRDFSDPSQ 351
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV-----GSVAEKEGW-----PLD---- 476
+ QV+E+NL + P +GP P VA++ + K+G+ LD
Sbjct: 352 DPDFAQVVELNLRTVVPCCSGPKRPQDKVAVADMKKDFESCLGAKQGFKGFQVALDHHND 411
Query: 477 -----------------IRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ + I SCTN+S + A +AK+A+ GL K + ++
Sbjct: 412 HKTFIYNNSEFTLTHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVNAGLTVKPYIKTSL 471
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDR------KDIKKGEKNTI-V 755
+PGS + + G L +G V+ C CIG + I +G+ + V
Sbjct: 472 SPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEAVVEAITQGDLVAVGV 531
Query: 756 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 926
S NRNF GR +P T A ++ SP +V A AIAGT++ + E + L G++ L+
Sbjct: 532 LSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTVRIDFEKEPLGVNAKGQQVFLKDI 589
Query: 927 -PDADELPRAEFD---PG--QDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKW------ 1070
P DE+ E PG ++ YQ + +P S +L P +
Sbjct: 590 WPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALAAP-SDKLYCWNPKSTYIKSPPF 648
Query: 1071 ---------DGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRG 1172
K + +L+ + TTDHIS AG + F
Sbjct: 649 FENLTLAVQPPKSIVGAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNS 708
Query: 1173 HLDNISNNLLIGA---INIE------NGKANSVRNAVTQEFGPVPDTARYYKQHGIRWVV 1325
+ N+ ++ NI N +A + + E V D A Y+Q G+ +V
Sbjct: 709 YGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTIHLPSGEILDVFDAAEQYQQAGLPLIV 768
Query: 1326 IGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 1475
+ + YG GSSR+ AA P LG +A++ +S+ RIH +NL G++PL +
Sbjct: 769 LAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEY 818
>ref|XP_532364.2| PREDICTED: similar to iron-responsive element binding protein 2
[Canis familiaris].
Length = 964
Score = 130 bits (327), Expect = 4e-30
Identities = 152/590 (25%), Positives = 250/590 (42%), Gaps = 99/590 (16%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +L+GS + + + DV+L + L G G VE+ G GV +S
Sbjct: 308 GLPVSLTLPEVVGCELSGSSNPFVTSIDVVLGITKHLRQVGVAGKFVEFFGSGVSQLSIV 367
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANLADEFK-----DHLVPDPG 341
TI NM E GA S FP ++ K+L TG +A + ++ K H + G
Sbjct: 368 DRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGFDKAKLKSVETYLKAVKLFRHDQDNSG 427
Query: 342 -CHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGS-----------------VAEKEGW 467
Y QVI I+L+ + P ++GP P V ++ AEK+
Sbjct: 428 EPTYSQVIRIHLNSIVPSVSGPKRPQDRVAVTDMKRDFQACLNEKVGFKGFQIAAEKQKD 487
Query: 468 PLDIR--------------VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ IR + + SCTN+ + +A +AK+A+ GL K + ++
Sbjct: 488 YVCIRYEGSEYTLSHGSVVLAAVTSCTNNCNPSVMLAAGLLAKKAVDAGLHVKPYIRTSL 547
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIG------QWDRKDIKKGEKNTI-V 755
+PGS + + G L +G ++ C C+G + +K+G+ T V
Sbjct: 548 SPGSGMVTHYLSSSGVLPYLSKLGFEIVGYGCSTCVGNTAPLPEAVLNAVKQGDLVTCGV 607
Query: 756 TSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA-- 926
S N+NF GR + ++ SP +V A AIAGT+ + +T+ L T G+ L+
Sbjct: 608 LSGNKNFEGRL-CDCVRANYLASPPLVVAYAIAGTVNIDFQTEPLGTDPTGRSIYLQDIW 666
Query: 927 PDADELPRAE---------------FDPGQDTYQH-PPKDSSGQRVDVSPTSQRLQLLEP 1058
P +E+ + E + G + DS D+ T R
Sbjct: 667 PSREEVHQMEEERVVLSMFKVLKEKMEMGNKRWNSLEAPDSVLFPWDLKSTYIRCPSF-- 724
Query: 1059 FDKWDG-----KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL------- 1202
FDK + +E+ +L+ + TTDHIS AG + ++N L
Sbjct: 725 FDKLTKEPVALRPIENAHVLLYLGDSVTTDHISPAGSIARSSAAAKYLTNRGLTPREFNS 784
Query: 1203 IGAINIENGKANSVRNAVTQEFG-----PVPDT--------------ARYYKQHGIRWVV 1325
GA + A + F P P T A Y++ G+ ++
Sbjct: 785 YGARRGNDAVMTRGTFANIKLFNKFLGKPAPKTIHFPSGQTLDVFEAAELYQKDGVPLII 844
Query: 1326 IGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 1475
+ + YG G+SR+ AA P LG +A++ +S+ +IH+ +L G++PL F
Sbjct: 845 LAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIVPLQF 894
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,864,865
Number of extensions: 2384440
Number of successful extensions: 11981
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11788
Number of HSP's successfully gapped: 12
Length of query: 598
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 489
Effective length of database: 15,240,880
Effective search space: 7452790320
Effective search space used: 7452790320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999119.1| aconitate hydratase, mitochondrial precursor [S... 1149 0.0
Alignment gi|XP_003357777.1| PREDICTED: cytoplasmic aconitate hydratase [... 152 6e-37
Alignment gi|NP_001161253.1| iron-responsive element-binding protein 2 [S... 137 2e-32
>ref|NP_999119.1| aconitate hydratase, mitochondrial precursor [Sus scrofa].
Length = 781
Score = 1149 bits (2972), Expect = 0.0
Identities = 559/563 (99%), Positives = 561/563 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIEN KANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREH ALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHRALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 758
Query: 1623 HETQIEWFRAGSALHRMKELQQK 1691
+ETQIEWFRAGSAL+RMKELQQK
Sbjct: 759 NETQIEWFRAGSALNRMKELQQK 781
>ref|XP_003357777.1| PREDICTED: cytoplasmic aconitate hydratase [Sus scrofa].
Length = 889
Score = 152 bits (384), Expect = 6e-37
Identities = 174/662 (26%), Positives = 277/662 (41%), Gaps = 105/662 (15%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G P + P+VIG KL G+ + D++L + L G G VE+ GPGV +S
Sbjct: 232 GQPISMVLPQVIGYKLMGNPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 291
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD--------IANLADEFKDHLVPDP 338
ATI NM E GAT + FP + KYL +TGR + F+D
Sbjct: 292 DRATIANMCPEYGATAAFFPVDEVSIKYLVQTGRDEDKVKHIKKYLQAVGMFRDFSDSSQ 351
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV-----GSVAEKEGWP----------- 470
+ QV+E++L + P +GP P V+++ + K+G+
Sbjct: 352 DPDFAQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQIAPDHHND 411
Query: 471 ---------------LDIRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ + I SCTN+S + A +AK+A+ GL K + ++
Sbjct: 412 HKTFIYDNSEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVKPYIKTSL 471
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDR------KDIKKGEKNTI-V 755
+PGS + + G L +G V+ C CIG + I +G+ + V
Sbjct: 472 SPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEAVVEAITQGDLVAVGV 531
Query: 756 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLK--FNPETDFLTGKDGKKFKLEA 926
S NRNF GR +P T A ++ SP +V A AIAGT++ F E + K + F +
Sbjct: 532 LSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGMNAKGQQVFLKDI 589
Query: 927 -PDADELPRAEFD---PG--QDTYQ------------HPPKDS------SGQRVDVSPTS 1034
P DE+ E PG ++ YQ P D+ + P
Sbjct: 590 WPTRDEIQAVERQFVIPGMFKEVYQKIETVNESWNALEAPSDTLYSWNPKSTYIKSPPFF 649
Query: 1035 QRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 1163
+ L L D K + D +L+ + TTDHIS AG +
Sbjct: 650 EDLTL----DLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPRD 705
Query: 1164 FRGHLDNISNNLLIGA---INIE------NGKANSVRNAVTQEFGPVPDTARYYKQHGIR 1316
F + N+ ++ NI N +A + + E V D A Y+Q G+
Sbjct: 706 FNSYGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTIHLPSGEVLDVFDAAERYQQAGLP 765
Query: 1317 WVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPAD 1490
+++ + YG GSSR+ AA P LG +A++ +S+ RIH +NL G++PL + + AD
Sbjct: 766 LIILAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENAD 825
Query: 1491 YNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNG-TQETILLNHTFHETQIEWFRAGSALH 1667
+ ++ TI + P +K +K G T + ++ T + ++ +F G L+
Sbjct: 826 TLGLTGRERYTISIPETLKP--QMKVQVKLDTGKTFQAVMRFDT--DVELTYFHNGGILN 881
Query: 1668 RM 1673
M
Sbjct: 882 YM 883
>ref|NP_001161253.1| iron-responsive element-binding protein 2 [Sus scrofa].
Length = 964
Score = 137 bits (345), Expect = 2e-32
Identities = 163/660 (24%), Positives = 277/660 (41%), Gaps = 105/660 (15%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +LTGS + + + DV+L + L G G VE+ G GV +S
Sbjct: 308 GLPVSLTLPEVVGCELTGSSNPFVTSIDVVLGITKHLRQIGVAGKFVEFFGSGVSQLSIV 367
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANL------ADEFKDHLVPDP 338
TI NM E GA S FP ++ K+L TG +A + ++ F++
Sbjct: 368 DRTTIANMCPEYGAILSFFPVDNVTLKHLEYTGFNKAKLKSMETYLKAVKLFRNDQDNSG 427
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGS-----------------VAEKEGW 467
Y QVI+INL+ + P ++GP P V ++ S AEK+
Sbjct: 428 EPEYSQVIQINLNSIVPSVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQIAAEKQND 487
Query: 468 PLDIR--------------VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ I + + SCTN+ + +A +AK+A+ GL+ K + ++
Sbjct: 488 TVSIHYEGSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEAGLRVKPYIRTSL 547
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIG------QWDRKDIKKGEKNTI-V 755
+PGS + + G L +G ++ C C+G + +K+G+ T V
Sbjct: 548 SPGSGMVTHYLSSSGVLPYLSKLGFEIVGYGCSTCVGNTAPLSEAVLNAVKQGDLVTCGV 607
Query: 756 TSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA-- 926
S N+NF GR + ++ SP +V A AIAGT+ + T+ L GK L
Sbjct: 608 LSGNKNFEGRL-CDCVRANYLASPPLVVAYAIAGTVNIDFRTEPLGIDPTGKNIYLHDIW 666
Query: 927 PDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDK----WDGKD---- 1082
P +E+ + E + + K+ + ++R LE D WD K
Sbjct: 667 PSREEVHQIEEEHVVLSMFKALKEK------IEMGNKRWNSLEAPDSVLFPWDLKSTYIR 720
Query: 1083 -----------------LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL--- 1202
+E+ +L+ + TTDHIS AG + ++N L
Sbjct: 721 CPSFFDKLTKEPVALQPIENAHVLLYLGDSVTTDHISPAGSIARSSAAAKYLTNRGLTPR 780
Query: 1203 ----IGAINIENGKANSVRNAVTQEFG-----PVPDT--------------ARYYKQHGI 1313
GA + A + F P P T A Y++ GI
Sbjct: 781 EFNSYGARRGNDAVMTRGTFANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGI 840
Query: 1314 RWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPA 1487
+++ + YG G+SR+ AA P LG +A++ +S+ +IH+ +L G+ PL F + A
Sbjct: 841 PLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQFLPGENA 900
Query: 1488 DYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFHETQIEWFRAGSALH 1667
D + + ++ ++ +PG L IK G +++ + ++ +I ++ G L+
Sbjct: 901 DSLGLSGRETFSLTFPEELSPGVTLN--IKTSTGKIFSVIASFE-NDVEIILYKHGGLLN 957
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,328,692
Number of extensions: 1498056
Number of successful extensions: 7668
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7516
Number of HSP's successfully gapped: 6
Length of query: 598
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 493
Effective length of database: 8,729,747
Effective search space: 4303765271
Effective search space used: 4303765271
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542364.1| aconitate hydratase, mitochondrial precursor [M... 1137 0.0
Alignment gi|NP_031412.2| cytoplasmic aconitate hydratase [Mus musculus]. 156 4e-38
Alignment gi|NP_073146.2| iron-responsive element-binding protein 2 [Mus ... 140 4e-33
>ref|NP_542364.1| aconitate hydratase, mitochondrial precursor [Mus musculus].
Length = 780
Score = 1137 bits (2940), Expect = 0.0
Identities = 548/562 (97%), Positives = 560/562 (99%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR DIANLA+EFKDHLVPDPGC YDQVI
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRTDIANLAEEFKDHLVPDPGCQYDQVI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINL+ELKPHINGPFTPDLAHPVA+VG+VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLNELKPHINGPFTPDLAHPVADVGTVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ+LRDVGGIVLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQILRDVGGIVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD
Sbjct: 459 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKFKLEAPDADELPR++FDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFKLEAPDADELPRSDFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADP+DYNKIHPVDKLTIQGLKDFAPGKPLKC+IKHPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPSDYNKIHPVDKLTIQGLKDFAPGKPLKCVIKHPNGTQETILLNHTF 758
Query: 1623 HETQIEWFRAGSALHRMKELQQ 1688
+ETQIEWFRAGSAL+RMKELQQ
Sbjct: 759 NETQIEWFRAGSALNRMKELQQ 780
>ref|NP_031412.2| cytoplasmic aconitate hydratase [Mus musculus].
Length = 889
Score = 156 bits (395), Expect = 4e-38
Identities = 175/659 (26%), Positives = 278/659 (42%), Gaps = 102/659 (15%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G P + P+VIG KL G + D++L + L G G VE+ GPGV +S
Sbjct: 232 GQPISMVLPQVIGYKLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 291
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD--------IANLADEFKDHLVPDP 338
ATI NM E GAT + FP + YL +TGR + F+D
Sbjct: 292 DRATIANMCPEYGATAAFFPVDEVSIAYLLQTGREEDKVKHIQKYLQAVGMFRDFNDTSQ 351
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV-----GSVAEKEGWP----------- 470
+ QV+E++L + P +GP P V+E+ + K+G+
Sbjct: 352 DPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSEMKKDFESCLGAKQGFKGFQVAPDRHND 411
Query: 471 ---------------LDIRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ + I SCTN+S + A +AK+A+ GL K + ++
Sbjct: 412 RKTFLYSNSEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVEAGLSVKPYIKTSL 471
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDR------KDIKKGEKNTI-V 755
+PGS + + G L +G V+ C CIG + I +G+ + V
Sbjct: 472 SPGSGVVTYYLRESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGV 531
Query: 756 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 926
S NRNF GR +P T A ++ SP +V A AIAGT++ + E + L G++ L+
Sbjct: 532 LSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTVRIDFEKEPLGVNAQGRQVFLKDI 589
Query: 927 -PDADELPRAEFD---PG--QDTYQHPPKDSSGQRVDVSPTSQRLQLLEP---------- 1058
P DE+ E PG ++ YQ + +P S++L P
Sbjct: 590 WPTRDEIQAVERQHVIPGMFKEVYQKIETVNKSWNALAAP-SEKLYAWNPKSTYIKSPPF 648
Query: 1059 -----FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRG 1172
D K + D +L+ + TTDHIS AG + F
Sbjct: 649 FESLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNS 708
Query: 1173 HLDNISNNLLIGA---INIE------NGKANSVRNAVTQEFGPVPDTARYYKQHGIRWVV 1325
+ N+ ++ NI N +A + + E V D A Y+Q G+ +V
Sbjct: 709 YGSRRGNDAIMARGTFANIRLLNKFLNKQAPQTVHLPSGETLDVFDAAERYQQAGLPLIV 768
Query: 1326 IGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNK 1499
+ + YG GSSR+ AA P LG +A++ +S+ RIH +NL G++PL + + AD
Sbjct: 769 LAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLG 828
Query: 1500 IHPVDKLTIQGLKDFAPGKPLKCIIKHPNG-TQETILLNHTFHETQIEWFRAGSALHRM 1673
+ ++ TI +D P ++ IK G T + ++ T + ++ +F G L+ M
Sbjct: 829 LTGRERYTINIPEDLKPRMTVQ--IKLDTGKTFQAVMRFDT--DVELTYFHNGGILNYM 883
>ref|NP_073146.2| iron-responsive element-binding protein 2 [Mus musculus].
Length = 963
Score = 140 bits (352), Expect = 4e-33
Identities = 164/657 (24%), Positives = 281/657 (42%), Gaps = 102/657 (15%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +LTGS + + + D++L + L G G VE+ G GV +S
Sbjct: 308 GLPVTLTLPEVVGCELTGSSNAFVTSIDIVLGITKHLRQVGVAGKFVEFFGSGVSQLSIV 367
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANLADEFK-------DHLVPD 335
TI NM E GA S FP ++ ++L TG + + ++ K D +
Sbjct: 368 DRTTIANMCPEYGAILSFFPVDNVTLRHLEHTGFDKTKLESMEKYLKAVKLFRNDENSSE 427
Query: 336 PGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGS-----------------VAEKEG 464
P Y QVI+INL+ + ++GP P V ++ S AEK+
Sbjct: 428 P--EYSQVIQINLNSIVASVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQVAAEKQS 485
Query: 465 WPLDIR--------------VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFT 593
+ +R + + SCTN+ + +A +AK+A+ GL+ K + +
Sbjct: 486 DTVSVRYDGSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEIGLRVKPYIRTS 545
Query: 594 ITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIG------QWDRKDIKKGEKNTI- 752
++PGS + + G L +G ++ C C+G + +K+G+ T
Sbjct: 546 LSPGSGMVTHYLSSSGVLPYLSKLGFDIVGYGCSTCVGNTAPLSEAVLNAVKQGDLVTCG 605
Query: 753 VTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 926
V S N++F GR + ++ SP +V A AIAGT+ + +T+ L T GK+ L
Sbjct: 606 VLSGNKHFEGRL-CDCVRANYLASPPLVVAYAIAGTVNIDFQTEPLGTDSTGKEIYLHDI 664
Query: 927 -PDADELPRAE--------FDPGQDTYQHPPK--------DSSGQRVDVSPTSQRLQLLE 1055
P +E+ + E F ++ + K DS DV T R
Sbjct: 665 WPSREEVHQMEEEHVILSMFKTLKEKVEMGNKRWNSLEAPDSVLFPWDVKSTYIRCPSF- 723
Query: 1056 PFDKWD-----GKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL------ 1202
FDK + +E+ +L+ + TTDHIS AG + ++N L
Sbjct: 724 -FDKLTKEPAASQPIENAHVLLYLGDSVTTDHISPAGSIARSSAAAKYLTNRGLTPREFN 782
Query: 1203 -IGAINIENGKANSVRNAVTQEFG-----PVPDT--------------ARYYKQHGIRWV 1322
GA + A + F P P T A Y++ GI +
Sbjct: 783 SYGARRGNDAVMTRGTFANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGIPLI 842
Query: 1323 VIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYN 1496
++ + YG G+SR+ AA P LG +A++ +S+ +IH+ +L G+ PL F + AD
Sbjct: 843 ILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLEFLPGENADSL 902
Query: 1497 KIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTFHETQIEWFRAGSALH 1667
+ + ++ ++ PG L IK G + +++ + ++ +I ++ G L+
Sbjct: 903 GLSGREVFSLSFPEELFPGITLN--IKTSTGKEFSVIASFA-NDVEITLYKHGGLLN 956
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,122,463
Number of extensions: 1930424
Number of successful extensions: 9005
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8875
Number of HSP's successfully gapped: 6
Length of query: 598
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 491
Effective length of database: 12,403,707
Effective search space: 6090220137
Effective search space used: 6090220137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001089.1| aconitate hydratase, mitochondrial precursor [H... 1132 0.0
Alignment gi|NP_002188.1| cytoplasmic aconitate hydratase [Homo sapiens]. 151 2e-36
Alignment gi|NP_004127.1| iron-responsive element-binding protein 2 [Homo... 141 2e-33
>ref|NP_001089.1| aconitate hydratase, mitochondrial precursor [Homo sapiens].
Length = 780
Score = 1132 bits (2928), Expect = 0.0
Identities = 546/562 (97%), Positives = 556/562 (98%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
GIPWELKCPKVIGVKLTGSLSGW+SPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT
Sbjct: 219 GIPWELKCPKVIGVKLTGSLSGWSSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 278
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVI 362
GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGR DIANLADEFKDHLVPDPGCHYDQ+I
Sbjct: 279 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREDIANLADEFKDHLVPDPGCHYDQLI 338
Query: 363 EINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 542
EINLSELKPHINGPFTPDLAHPVAEVG VAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA
Sbjct: 339 EINLSELKPHINGPFTPDLAHPVAEVGKVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAA 398
Query: 543 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRK 722
VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQ+LRD+GGIVLANACGPCIGQWDRK
Sbjct: 399 VAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQILRDLGGIVLANACGPCIGQWDRK 458
Query: 723 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFLTGKD 902
DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETD+LTG D
Sbjct: 459 DIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDYLTGTD 518
Query: 903 GKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKD 1082
GKKF+LEAPDADELP+ EFDPGQDTYQHPPKDSSGQ VDVSPTSQRLQLLEPFDKWDGKD
Sbjct: 519 GKKFRLEAPDADELPKGEFDPGQDTYQHPPKDSSGQHVDVSPTSQRLQLLEPFDKWDGKD 578
Query: 1083 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 1262
LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ
Sbjct: 579 LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGKANSVRNAVTQ 638
Query: 1263 EFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 1442
EFGPVPDTARYYK+HGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN
Sbjct: 639 EFGPVPDTARYYKKHGIRWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETN 698
Query: 1443 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNHTF 1622
LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDF PGKPLKCIIKHPNGTQETILLNHTF
Sbjct: 699 LKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFTPGKPLKCIIKHPNGTQETILLNHTF 758
Query: 1623 HETQIEWFRAGSALHRMKELQQ 1688
+ETQIEWFRAGSAL+RMKELQQ
Sbjct: 759 NETQIEWFRAGSALNRMKELQQ 780
>ref|NP_002188.1| cytoplasmic aconitate hydratase [Homo sapiens].
Length = 889
Score = 151 bits (382), Expect = 2e-36
Identities = 167/647 (25%), Positives = 270/647 (41%), Gaps = 110/647 (17%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G P + P+VIG +L G + D++L + L G G VE+ GPGV +S
Sbjct: 232 GQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIA 291
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD--------IANLADEFKDHLVPDP 338
ATI NM E GAT + FP + YL +TGR + F+D P
Sbjct: 292 DRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQ 351
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV-----GSVAEKEGWP----------- 470
+ QV+E++L + P +GP P V+++ + K+G+
Sbjct: 352 DPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHND 411
Query: 471 ---------------LDIRVGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ + I SCTN+S + A +AK+A+ GL + ++
Sbjct: 412 HKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSL 471
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDR------KDIKKGEKNTI-V 755
+PGS + ++ G L +G V+ C CIG + I +G+ + V
Sbjct: 472 SPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGV 531
Query: 756 TSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA- 926
S NRNF GR +P T A ++ SP +V A AIAGT++ + E + L G++ L+
Sbjct: 532 LSGNRNFEGR--VHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDI 589
Query: 927 -PDADELPRAEFD---PG--QDTYQHPPKDSSGQRVDVSPT-------SQRLQLLEP--- 1058
P DE+ E PG ++ YQ + +P+ S+ + P
Sbjct: 590 WPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFF 649
Query: 1059 ----FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGH 1175
D K + D +L+ + TTDHIS AG + F +
Sbjct: 650 ENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSY 709
Query: 1176 LDNISNNLLIGA---INIE------NGKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVI 1328
N+ ++ NI N +A + + E V D A Y+Q G+ +V+
Sbjct: 710 GSRRGNDAVMARGTFANIRLLNRFLNKQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVL 769
Query: 1329 GDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKI 1502
+ YG GSSR+ AA P LG +A++ +S+ RIH +NL G++PL + + AD +
Sbjct: 770 AGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGL 829
Query: 1503 HPVDKLTIQGLKDFAP----------GKPLKCIIKHPNGTQETILLN 1613
++ TI ++ P GK + +++ + T LN
Sbjct: 830 TGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLN 876
>ref|NP_004127.1| iron-responsive element-binding protein 2 [Homo sapiens].
Length = 963
Score = 141 bits (356), Expect = 2e-33
Identities = 154/594 (25%), Positives = 249/594 (41%), Gaps = 103/594 (17%)
Frame = +3
Query: 3 GIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 182
G+P L P+V+G +LTGS + + + DV+L + L G G VE+ G GV +S
Sbjct: 307 GLPVSLTLPEVVGCELTGSSNPFVTSIDVVLGITKHLRQVGVAGKFVEFFGSGVSQLSIV 366
Query: 183 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTG--RADIANL------ADEFKDHLVPDP 338
TI NM E GA S FP ++ K+L TG +A + ++ F++
Sbjct: 367 DRTTIANMCPEYGAILSFFPVDNVTLKHLEHTGFSKAKLESMETYLKAVKLFRNDQNSSG 426
Query: 339 GCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGS-----------------VAEKEGW 467
Y QVI+INL+ + P ++GP P V ++ S AEK+
Sbjct: 427 EPEYSQVIQINLNSIVPSVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQIAAEKQKD 486
Query: 468 PLDIR--------------VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 596
+ I + + SCTN+ + +A +AK+A+ GL+ K + ++
Sbjct: 487 IVSIHYEGSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEAGLRVKPYIRTSL 546
Query: 597 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWD------RKDIKKGEKNTI-V 755
+PGS + + G L +G ++ C C+G +K+G+ T +
Sbjct: 547 SPGSGMVTHYLSSSGVLPYLSKLGFEIVGYGCSTCVGNTAPLSDAVLNAVKQGDLVTCGI 606
Query: 756 TSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA-- 926
S N+NF GR + ++ SP +V A AIAGT+ + +T+ L T GK L
Sbjct: 607 LSGNKNFEGRL-CDCVRANYLASPPLVVAYAIAGTVNIDFQTEPLGTDPTGKNIYLHDIW 665
Query: 927 PDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDK----WDGKD---- 1082
P +E+ R E + + KD + ++R LE D WD K
Sbjct: 666 PSREEVHRVEEEHVILSMFKALKDK------IEMGNKRWNSLEAPDSVLFPWDLKSTYIR 719
Query: 1083 -----------------LEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLL--- 1202
+E+ +L+ + TTDHIS AG + ++N L
Sbjct: 720 CPSFFDKLTKEPIALQAIENAHVLLYLGDSVTTDHISPAGSIARNSAAAKYLTNRGLTPR 779
Query: 1203 ----IGAINIENGKANSVRNAVTQEFG-----PVPDT--------------ARYYKQHGI 1313
GA + A + F P P T A Y++ GI
Sbjct: 780 EFNSYGARRGNDAVMTRGTFANIKLFNKFIGKPAPKTIHFPSGQTLDVFEAAELYQKEGI 839
Query: 1314 RWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 1475
+++ + YG G+SR+ AA P LG +A++ +S+ +IH+ +L G+ PL F
Sbjct: 840 PLIILAGKKYGSGNSRDWAAKGPYLLGVKAVLAESYEKIHKDHLIGIGIAPLQF 893
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 76,197,217
Number of extensions: 2325922
Number of successful extensions: 10961
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10840
Number of HSP's successfully gapped: 7
Length of query: 598
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 490
Effective length of database: 14,737,052
Effective search space: 7221155480
Effective search space used: 7221155480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014260
(1796 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 391 e-105
>Sscrofa_Chr05
|| Length = 111506441
Score = 391 bits (197), Expect = e-105
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 1105 tcaaggtcaaaggcaagtgtaccactgaccacatctcggctgctggcccctggctcaagt 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388156 tcaaggtcaaaggcaagtgtaccactgaccacatctcggctgctggcccctggctcaagt 4388097
Query: 1165 tccgtgggcacctggacaacatctccaataacttgctcatcggtgccatcaacattgaaa 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388096 tccgtgggcacctggacaacatctccaataacttgctcatcggtgccatcaacattgaaa 4388037
Query: 1225 acggcaaggccaactccgtgcgcaatgctgtcacccaggagtttggtcctgtccctgaca 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388036 acggcaaggccaactccgtgcgcaatgctgtcacccaggagtttggtcctgtccctgaca 4387977
Query: 1285 ctgcccgctactacaag 1301
|||||||||||||||||
Sbjct: 4387976 ctgcccgctactacaag 4387960
Score = 363 bits (183), Expect = 2e-97
Identities = 230/243 (94%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 1555 agcccctgaagtgcatcatcaagcaccccaacgggacccaggagaccatcctgctgaacc 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386382 agcccctgaagtgcatcatcaagcaccccaacgggacccaggagaccatcctgctgaacc 4386323
Query: 1615 acacttttcacgagacccagatcgagtggttccgcgccggcagtgcccttcacagaatga 1674
|||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4386322 acaccttcaacgagacccagatcgagtggttccgcgccggcagtgccctcaacagaatga 4386263
Query: 1675 aggagctgcagcagaaataaggccctgctcttgcaacactgcccccacgt-cgtcctgct 1733
|||||||||||||||| |||||||||||||| || |||||||| | ||| |||||||||
Sbjct: 4386262 aggagctgcagcagaagtaaggccctgctctgccaccactgcccac-cgtccgtcctgct 4386204
Query: 1734 cttcagacccagctccgctgtccccagtgcagtccatgtcatcagagccggacctgagct 1793
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4386203 cttcagacccagctccgctgtcccaagtgcagtccatgtcatcagagccggacctgagct 4386144
Query: 1794 gat 1796
|||
Sbjct: 4386143 gat 4386141
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 485 aggtctgatcggcagctgtaccaactccagctatgaggacatggggcgctcagcagccgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4391297 aggtctgatcggcagctgtaccaactccagctatgaggacatggggcgctcagcagccgt 4391238
Query: 545 ggccaagcaggcactggctcacggactcaagtgcaagtcccagtttaccatcacaccggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4391237 ggccaagcaggcactggctcacggactcaagtgcaagtcccagtttaccatcacaccggg 4391178
Query: 605 ctctgagcagatccgagccaccattgagcgggatggttacg 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 4391177 ctctgagcagatccgagccaccattgagcgggatggttacg 4391137
Score = 281 bits (142), Expect = 6e-73
Identities = 151/154 (98%)
Strand = Plus / Minus
Query: 31 aggtcattggagtgaagctgacgggctcgctctctggttggacctcacccaaagatgtga 90
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4396969 aggtgattggtgtgaagctgacgggctcgctctctggctggacctcacccaaagatgtga 4396910
Query: 91 tcctgaaggtggcgggcatcctcaccgtgaaaggtggcacgggtgccatcgtggagtacc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396909 tcctgaaggtggcgggcatcctcaccgtgaaaggtggcacgggtgccatcgtggagtacc 4396850
Query: 151 atgggcctggcgtggactccatctcctgcactgg 184
||||||||||||||||||||||||||||||||||
Sbjct: 4396849 atgggcctggcgtggactccatctcctgcactgg 4396816
Score = 276 bits (139), Expect = 4e-71
Identities = 153/160 (95%)
Strand = Plus / Minus
Query: 953 ggagttcgaccctggacaggacacgtaccagcannnnnnnaaggacagcagcgggcagcg 1012
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4389404 ggagttcgaccctggacaggacacgtaccagcacccccccaaggacagcagcgggcagcg 4389345
Query: 1013 ggtggacgtgagccccaccagccagcgcctgcagctcctggagcctttcgacaagtggga 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389344 ggtggacgtgagccccaccagccagcgcctgcagctcctggagcctttcgacaagtggga 4389285
Query: 1073 cggcaaagacctggaggacctgcagattctcatcaaggtc 1112
||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389284 cggcaaagacctggaggacctgcagattctcatcaaggtc 4389245
Score = 252 bits (127), Expect = 6e-64
Identities = 133/135 (98%)
Strand = Plus / Minus
Query: 1300 agcaacacggcatccggtgggtggtgatcggagatgagaactacggcgagggctcgagcc 1359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4387555 agcaacacggcatccggtgggtggtcatcggagatgagaactacggcgagggctcgagcc 4387496
Query: 1360 gggagcatgcggccctggagccgcgccacctcgggggccgggccatcatcaccaagagct 1419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4387495 gggagcatgcggccctggagccgcgccaccttgggggccgggccatcatcaccaagagct 4387436
Query: 1420 tcgccaggatccacg 1434
|||||||||||||||
Sbjct: 4387435 tcgccaggatccacg 4387421
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 829 agattgtcaccgccctggccatcgctggcaccctcaagttcaacccagagactgacttcc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389660 agattgtcaccgccctggccatcgctggcaccctcaagttcaacccagagactgacttcc 4389601
Query: 889 tgacaggcaaggatggcaagaagttcaagctggaggctccggatgcagacgagcttcccc 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389600 tgacaggcaaggatggcaagaagttcaagctggaggctccggatgcagacgagcttcccc 4389541
Query: 949 gagcgg 954
||||||
Sbjct: 4389540 gagcgg 4389535
Score = 236 bits (119), Expect = 3e-59
Identities = 122/123 (99%)
Strand = Plus / Minus
Query: 1434 gaaaccaacctgaagaagcagggcctgctgcccctgaccttcgccgacccagcggactac 1493
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4386959 gaaaccaacctgaagaagcagggcctgctgcccctgaccttcgctgacccagcggactac 4386900
Query: 1494 aacaagatccaccccgtggacaagctgaccatccagggcctgaaggactttgcccctggc 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4386899 aacaagatccaccccgtggacaagctgaccatccagggcctgaaggactttgcccctggc 4386840
Query: 1554 aag 1556
|||
Sbjct: 4386839 aag 4386837
Score = 220 bits (111), Expect = 2e-54
Identities = 114/115 (99%)
Strand = Plus / Minus
Query: 716 cagaaaggacatcaagaagggggagaagaacacaattgtcacctcctacaaccgcaactt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4390234 cagaaaggacatcaagaagggggagaagaacacaattgtcacctcctacaaccgcaactt 4390175
Query: 776 cacaggccgcaacgacgccaaccctgagacccatgccttcgtcacgtccccggag 830
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4390174 cacaggccgcaacgacgccaaccccgagacccatgccttcgtcacgtccccggag 4390120
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 379 agctgaagccacacatcaacgggcccttcacccctgacctggctcaccccgtggcggaag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392939 agctgaagccacacatcaacgggcccttcacccctgacctggctcaccccgtggcggaag 4392880
Query: 439 tgggcagcgtggcagagaaggaggggtggccgctggacatccgagtaggt 488
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392879 tgggcagcgtggcagagaaggaggggtggccgctggacatccgagtaggt 4392830
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 183 ggcatggcgacaatctgcaacatgggcgcagagatcggggccaccacctccgtgtttcct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395343 ggcatggcgacaatctgcaacatgggcgcagagatcggggccaccacctccgtgtttcct 4395284
Query: 243 tacaaccacaggatgaagaagtacctgagcaagacaggccgggcag 288
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395283 tacaaccacaggatgaagaagtacctgagcaagacaggccgggcag 4395238
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 286 cagatattgccaacctcgctgacgaattcaaggaccacttggtacctgaccctggctgcc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4394435 cagatattgccaacctcgctgacgaattcaaggaccacttggtacctgaccctggctgcc 4394376
Query: 346 attatgaccaagtgattgaaattaacctcagcgag 380
|||||||||||||||||||||||||||||||||||
Sbjct: 4394375 attatgaccaagtgattgaaattaacctcagcgag 4394341
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 645 gcacaggtcctgagggatgtgggcggcatcgtcctggccaatgcctgcggcccctgcatt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4390957 gcacaggtcctgagggatgtgggcggcatcgtcctggccaatgcctgcggcccctgcatt 4390898
Query: 705 ggccagtgggacag 718
||||||||||||||
Sbjct: 4390897 ggccagtgggacag 4390884
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 3 gggatcccctgggagctgaagtgccccaaggt 34
||||||||||||||||||||||||||||||||
Sbjct: 4397223 gggatcccctgggagctgaagtgccccaaggt 4397192
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,394,865
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 14
Length of query: 1796
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1774
Effective length of database: 2,808,408,574
Effective search space: 4982116810276
Effective search space used: 4982116810276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)