Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014874.1| GTP-binding protein 5 [Bos taurus]. 335 3e-92
Alignment gi|NP_001073783.1| GTP-binding protein 10 [Bos taurus]. 77 2e-14
>ref|NP_001014874.1| GTP-binding protein 5 [Bos taurus].
Length = 454
Score = 335 bits (859), Expect = 3e-92
Identities = 173/264 (65%), Positives = 189/264 (71%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
MIP RLFSAR LEGV W AR VPGP L + A RLL V CA KHQEP
Sbjct: 1 MIPSRLFSARPQVMLEGVGFWMLAARVVPGPSCLLLLRASPRLLSVSCADCTKHQEPPRK 60
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
+HFVD +G SCFHSEPRKEF HV+L+VD+
Sbjct: 61 QPLSEKKLKQHFVDHRRVLVRGGHGGNGVSCFHSEPRKEFGGPDGGDGGNGGHVVLRVDQ 120
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLSRYQG DG DGGRKNC GRNGA+LY+RVPVGTLVKEG +VLADLS PG E+
Sbjct: 121 QVKSLSSVLSRYQGFDGEDGGRKNCFGRNGAVLYIRVPVGTLVKEGNEVLADLSRPGDEF 180
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
+AA+GG GGKGNRFFLANDNRAP TCTPGQPGQERVL L +TVAHAG+VGFPNAGKSSL
Sbjct: 181 IAAVGGTGGKGNRFFLANDNRAPTTCTPGQPGQERVLFLELKTVAHAGLVGFPNAGKSSL 240
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +ARPAVA+YPFTTL P G
Sbjct: 241 LRAISNARPAVAAYPFTTLNPHVG 264
>ref|NP_001073783.1| GTP-binding protein 10 [Bos taurus].
Length = 387
Score = 77.0 bits (188), Expect = 2e-14
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Frame = +3
Query: 468 RYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVK-EGGQVLADLSHPGAEYVAALGGAGG 644
R+ +G + G G + VPVG V E G+++ +L+ + A GG GG
Sbjct: 66 RFVAGEGANSRVSALKGSKGKDCEIPVPVGVSVTDENGKIIGELNKEKDRLLVAEGGLGG 125
Query: 645 KGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSLLRAIFDARP 824
K FL GQ+RV+ L + +A G+VGFPNAGKSSLL I A+P
Sbjct: 126 KLLTNFLP------------LKGQKRVIHLDLKLIADIGLVGFPNAGKSSLLSKISHAKP 173
Query: 825 AVASYPFTTLTPTSG 869
A+A Y FTT+ P G
Sbjct: 174 AIADYAFTTIKPELG 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,382,822
Number of extensions: 876399
Number of successful extensions: 4447
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4432
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 192
Effective length of database: 14,339,486
Effective search space: 2753181312
Effective search space used: 2753181312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014275
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534473.2| PREDICTED: similar to GTP binding protein 5 [Ca... 298 3e-81
>ref|XP_534473.2| PREDICTED: similar to GTP binding protein 5 [Canis familiaris].
Length = 383
Score = 298 bits (764), Expect = 3e-81
Identities = 163/264 (61%), Positives = 173/264 (65%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M+P RL S L V RWT LL CA AKHQEP
Sbjct: 1 MVPSRLLSVGPRPLLGSVWRWTQVG-----------------LLSASCADCAKHQEPPRK 43
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
+HFVD DGASCFHSEPRKEF HV+L+ D+
Sbjct: 44 KLLSEKKLKKHFVDHRRVLVRGGRGGDGASCFHSEPRKEFGGPDGGDGGSGGHVVLRADQ 103
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLSRYQG G GGRKNCSGR+G LLYV VPVGTLVKEG +V+ADLS PG EY
Sbjct: 104 QVKSLSSVLSRYQGSHGEAGGRKNCSGRSGTLLYVPVPVGTLVKEGNKVVADLSCPGDEY 163
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVL L + VAHAGMVGFPNAGKSSL
Sbjct: 164 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLFLELKMVAHAGMVGFPNAGKSSL 223
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +ARP VASYPFTTL P G
Sbjct: 224 LRAISNARPTVASYPFTTLKPHVG 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,758,346
Number of extensions: 904835
Number of successful extensions: 4646
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4628
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 191
Effective length of database: 15,474,232
Effective search space: 2955578312
Effective search space used: 2955578312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,352,301
Number of extensions: 568996
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2876
Number of HSP's successfully gapped: 0
Length of query: 293
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,904,026
Effective search space: 1736285070
Effective search space used: 1736285070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076797.1| GTP binding protein 5 [Mus musculus]. 318 3e-87
Alignment gi|NP_852089.2| GTP binding protein 5 [Mus musculus]. 318 3e-87
Alignment gi|NP_082698.1| GTP binding protein 5 [Mus musculus]. 318 3e-87
Alignment gi|NP_001076798.1| GTP binding protein 5 [Mus musculus]. 318 3e-87
Alignment gi|NP_694756.1| GTP-binding protein 10 [Mus musculus]. 77 1e-14
>ref|NP_001076797.1| GTP binding protein 5 [Mus musculus].
Length = 405
Score = 318 bits (816), Expect = 3e-87
Identities = 167/264 (63%), Positives = 186/264 (70%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M+ RL AR+ EGV +W P RAV P L + A RLL VG AKH+EPSG
Sbjct: 1 MVSTRLVLARTCTVFEGVLKWAPSTRAVLRPSHLL-LQASCRLLSVGIVDHAKHREPSGK 59
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
RHFVD G SCFHSEPRKEF H+IL+VD+
Sbjct: 60 KVLSEKKLKRHFVDHRRVLVRGGSGGSGMSCFHSEPRKEFGGPDGGDGGNGGHIILRVDQ 119
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLS+YQG G DGG KNCSGR GA LY++VPVGTLVKEG +++ADLS+ G EY
Sbjct: 120 QVKSLSSVLSQYQGFSGEDGGSKNCSGRGGATLYIQVPVGTLVKEGDKIVADLSNLGDEY 179
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVL L +T+AHAGMVGFPNAGKSSL
Sbjct: 180 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLYLELKTMAHAGMVGFPNAGKSSL 239
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +A+PAVASYPFTTL P G
Sbjct: 240 LRAISNAKPAVASYPFTTLNPHVG 263
>ref|NP_852089.2| GTP binding protein 5 [Mus musculus].
Length = 405
Score = 318 bits (816), Expect = 3e-87
Identities = 167/264 (63%), Positives = 186/264 (70%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M+ RL AR+ EGV +W P RAV P L + A RLL VG AKH+EPSG
Sbjct: 1 MVSTRLVLARTCTVFEGVLKWAPSTRAVLRPSHLL-LQASCRLLSVGIVDHAKHREPSGK 59
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
RHFVD G SCFHSEPRKEF H+IL+VD+
Sbjct: 60 KVLSEKKLKRHFVDHRRVLVRGGSGGSGMSCFHSEPRKEFGGPDGGDGGNGGHIILRVDQ 119
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLS+YQG G DGG KNCSGR GA LY++VPVGTLVKEG +++ADLS+ G EY
Sbjct: 120 QVKSLSSVLSQYQGFSGEDGGSKNCSGRGGATLYIQVPVGTLVKEGDKIVADLSNLGDEY 179
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVL L +T+AHAGMVGFPNAGKSSL
Sbjct: 180 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLYLELKTMAHAGMVGFPNAGKSSL 239
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +A+PAVASYPFTTL P G
Sbjct: 240 LRAISNAKPAVASYPFTTLNPHVG 263
>ref|NP_082698.1| GTP binding protein 5 [Mus musculus].
Length = 405
Score = 318 bits (816), Expect = 3e-87
Identities = 167/264 (63%), Positives = 186/264 (70%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M+ RL AR+ EGV +W P RAV P L + A RLL VG AKH+EPSG
Sbjct: 1 MVSTRLVLARTCTVFEGVLKWAPSTRAVLRPSHLL-LQASCRLLSVGIVDHAKHREPSGK 59
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
RHFVD G SCFHSEPRKEF H+IL+VD+
Sbjct: 60 KVLSEKKLKRHFVDHRRVLVRGGSGGSGMSCFHSEPRKEFGGPDGGDGGNGGHIILRVDQ 119
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLS+YQG G DGG KNCSGR GA LY++VPVGTLVKEG +++ADLS+ G EY
Sbjct: 120 QVKSLSSVLSQYQGFSGEDGGSKNCSGRGGATLYIQVPVGTLVKEGDKIVADLSNLGDEY 179
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVL L +T+AHAGMVGFPNAGKSSL
Sbjct: 180 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLYLELKTMAHAGMVGFPNAGKSSL 239
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +A+PAVASYPFTTL P G
Sbjct: 240 LRAISNAKPAVASYPFTTLNPHVG 263
>ref|NP_001076798.1| GTP binding protein 5 [Mus musculus].
Length = 405
Score = 318 bits (816), Expect = 3e-87
Identities = 167/264 (63%), Positives = 186/264 (70%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M+ RL AR+ EGV +W P RAV P L + A RLL VG AKH+EPSG
Sbjct: 1 MVSTRLVLARTCTVFEGVLKWAPSTRAVLRPSHLL-LQASCRLLSVGIVDHAKHREPSGK 59
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
RHFVD G SCFHSEPRKEF H+IL+VD+
Sbjct: 60 KVLSEKKLKRHFVDHRRVLVRGGSGGSGMSCFHSEPRKEFGGPDGGDGGNGGHIILRVDQ 119
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLS+YQG G DGG KNCSGR GA LY++VPVGTLVKEG +++ADLS+ G EY
Sbjct: 120 QVKSLSSVLSQYQGFSGEDGGSKNCSGRGGATLYIQVPVGTLVKEGDKIVADLSNLGDEY 179
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVL L +T+AHAGMVGFPNAGKSSL
Sbjct: 180 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLYLELKTMAHAGMVGFPNAGKSSL 239
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +A+PAVASYPFTTL P G
Sbjct: 240 LRAISNAKPAVASYPFTTLNPHVG 263
>ref|NP_694756.1| GTP-binding protein 10 [Mus musculus].
Length = 366
Score = 77.4 bits (189), Expect = 1e-14
Identities = 51/130 (39%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = +3
Query: 486 GGDGGRKNC-SGRNGALLYVRVPVG-TLVKEGGQVLADLSHPGAEYVAALGGAGGKGNRF 659
GG R + G G V PVG ++ E GQVL +L+ + A GG GGK +
Sbjct: 71 GGANSRVSALQGSKGKDCEVPAPVGISVTDENGQVLGELNKEEDRVLVAKGGLGGKLHTN 130
Query: 660 FLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSLLRAIFDARPAVASY 839
FL GQ+R++ L + +A G+VGFPNAGKSSLL + A P +A Y
Sbjct: 131 FLP------------LKGQKRIVHLDLKVIADVGLVGFPNAGKSSLLSRVSHATPVIADY 178
Query: 840 PFTTLTPTSG 869
FTTL P G
Sbjct: 179 AFTTLRPELG 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,656,871
Number of extensions: 711165
Number of successful extensions: 3349
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3330
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 192
Effective length of database: 12,583,923
Effective search space: 2416113216
Effective search space used: 2416113216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056481.1| GTP-binding protein 5 [Homo sapiens]. 314 6e-86
Alignment gi|NP_149098.2| GTP-binding protein 10 isoform 2 [Homo sapiens]. 77 2e-14
Alignment gi|NP_001036182.1| GTP-binding protein 10 isoform 1 [Homo sapie... 54 1e-07
>ref|NP_056481.1| GTP-binding protein 5 [Homo sapiens].
Length = 406
Score = 314 bits (805), Expect = 6e-86
Identities = 170/264 (64%), Positives = 184/264 (69%)
Frame = +3
Query: 78 MIPPRLFSARSWAALEGVRRWTPWARAVPGPGRLFPVHAPSRLLLVGCAHRAKHQEPSGX 257
M P R FSAR +GV W A P RL P A RLL VG A AKHQE G
Sbjct: 1 MAPARCFSARLRTVFQGVGHWALSTWAGLKPSRLLPQRASPRLLSVGRADLAKHQELPGK 60
Query: 258 XXXXXXXXXRHFVDQXXXXXXXXXXXDGASCFHSEPRKEFXXXXXXXXXXXXHVILKVDR 437
R+FVD GASCFHSEPRKEF HVIL+VD+
Sbjct: 61 KLLSEKKLKRYFVDYRRVLVCGGNGGAGASCFHSEPRKEFGGPDGGDGGNGGHVILRVDQ 120
Query: 438 QVKSLSSVLSRYQGCDGGDGGRKNCSGRNGALLYVRVPVGTLVKEGGQVLADLSHPGAEY 617
QVKSLSSVLSRYQG G DGG KNC GR+GA+LY+RVPVGTLVKEGG+V+ADLS G EY
Sbjct: 121 QVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGGRVVADLSCVGDEY 180
Query: 618 VAALGGAGGKGNRFFLANDNRAPVTCTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSL 797
+AALGGAGGKGNRFFLAN+NRAPVTCTPGQPGQ+RVL L +TVAHAGMVGFPNAGKSSL
Sbjct: 181 IAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSL 240
Query: 798 LRAIFDARPAVASYPFTTLTPTSG 869
LRAI +ARPAVASYPFTTL P G
Sbjct: 241 LRAISNARPAVASYPFTTLKPHVG 264
>ref|NP_149098.2| GTP-binding protein 10 isoform 2 [Homo sapiens].
Length = 387
Score = 77.4 bits (189), Expect = 2e-14
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Frame = +3
Query: 516 GRNGALLYVRVPVG-TLVKEGGQVLADLSHPGAEYVAALGGAGGKGNRFFLANDNRAPVT 692
G G + VPVG ++ E G+++ +L+ + A GG GGK FL
Sbjct: 82 GSKGKDCEIPVPVGISVTDENGKIIGELNKENDRILVAQGGLGGKLLTNFLP-------- 133
Query: 693 CTPGQPGQERVLLLGAQTVAHAGMVGFPNAGKSSLLRAIFDARPAVASYPFTTLTPTSG 869
GQ+R++ L + +A G+VGFPNAGKSSLL + A+PA+A Y FTTL P G
Sbjct: 134 ----LKGQKRIIHLDLKLIADVGLVGFPNAGKSSLLSCVSHAKPAIADYAFTTLKPELG 188
>ref|NP_001036182.1| GTP-binding protein 10 isoform 1 [Homo sapiens].
Length = 308
Score = 54.3 bits (129), Expect = 1e-07
Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +3
Query: 627 LGGAGGKGNRFFLANDNRAPVTCTPGQ-PGQERVLLLGAQTVAHAGMVGFPNAGKSSLLR 803
LGG GGKG ++ NR + + P + V +GA + FPNAGKSSLL
Sbjct: 35 LGGEGGKGGDVWVVAQNRMTLKQLKDRYPRKRFVAGVGANSK-------FPNAGKSSLLS 87
Query: 804 AIFDARPAVASYPFTTLTPTSG 869
+ A+PA+A Y FTTL P G
Sbjct: 88 CVSHAKPAIADYAFTTLKPELG 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,908,765
Number of extensions: 869216
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4239
Number of HSP's successfully gapped: 3
Length of query: 293
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 191
Effective length of database: 14,934,836
Effective search space: 2852553676
Effective search space used: 2852553676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014275
(879 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,186,570
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 0
Length of query: 879
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 858
Effective length of database: 2,808,413,156
Effective search space: 2409618487848
Effective search space used: 2409618487848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)