Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543677.2| PREDICTED: similar to Aquaporin 5 [Canis famili... 295 4e-80
Alignment gi|XP_543678.2| PREDICTED: similar to aquaporin 2 [Canis famili... 274 9e-74
Alignment gi|XP_850452.1| PREDICTED: similar to aquaporin 6 isoform 1 [Ca... 235 5e-62
Alignment gi|XP_861496.1| PREDICTED: similar to aquaporin 6 isoform 2 [Ca... 228 6e-60
Alignment gi|NP_001074369.1| lens fiber major intrinsic protein [Canis lu... 225 6e-59
Alignment gi|XP_855456.1| PREDICTED: similar to Aquaporin 4 (WCH4) (Mercu... 182 3e-46
Alignment gi|XP_855567.1| PREDICTED: aquaporin 1 [Canis familiaris]. 172 6e-43
Alignment gi|NP_001003130.1| aquaporin-1 [Canis lupus familiaris]. 172 6e-43
Alignment gi|XP_850126.1| PREDICTED: similar to aquaporin 8 isoform 1 [Ca... 100 2e-21
Alignment gi|XP_860694.1| PREDICTED: similar to aquaporin 8 isoform 2 [Ca... 50 5e-06
>ref|XP_543677.2| PREDICTED: similar to Aquaporin 5 [Canis familiaris].
Length = 337
Score = 295 bits (756), Expect = 4e-80
Identities = 156/210 (74%), Positives = 161/210 (76%)
Frame = +1
Query: 280 TLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNAR 459
TLAQALGPVSGGHINPAITLALLVGNQISLLRA FY NAR
Sbjct: 127 TLAQALGPVSGGHINPAITLALLVGNQISLLRAAFYVAAQLAGAIAGAGILYGLAPLNAR 186
Query: 460 GNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHL 639
GNLAVNSLNNNTT GQA+VVE+ILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHL
Sbjct: 187 GNLAVNSLNNNTTQGQAMVVELILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHL 246
Query: 640 VGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSE 819
VGIYFTGCSMNPARSFGPAVVM RFS +HWVFW LYFYLLFPNSLSLSE
Sbjct: 247 VGIYFTGCSMNPARSFGPAVVMKRFSSAHWVFWVGPIVGAILAAILYFYLLFPNSLSLSE 306
Query: 820 RVAVVKGTYXXXXXXXXXXXXRKKTMELTA 909
R+AV+KGTY RKKTMELTA
Sbjct: 307 RMAVIKGTYEPEEDWEEQREERKKTMELTA 336
>ref|XP_543678.2| PREDICTED: similar to aquaporin 2 [Canis familiaris].
Length = 271
Score = 274 bits (701), Expect = 9e-74
Identities = 142/238 (59%), Positives = 169/238 (71%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S+AF +AVFAEFLATL+FVFFGL SAL WP ALP++LQIA+AFGL IGTL QALG V
Sbjct: 3 ELRSVAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLGIGTLVQALGHV 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG HINPA+T+A LVG +S LRA FY + RG+LAVN+L+
Sbjct: 63 SGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEITPPHVRGDLAVNALS 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
NNTT GQAV VE+ LT QL LCIF+STD RR +G+PALSIG SV LGHL+GI++TGCS
Sbjct: 123 NNTTAGQAVTVELFLTLQLVLCIFASTDERRGDNLGTPALSIGFSVALGHLLGIHYTGCS 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARS PAVV +F HWVFW LY Y+LFP + SL+ER+AV+KG
Sbjct: 183 MNPARSLAPAVVTGKFD-DHWVFWIGPLVGAILGSLLYNYVLFPPAKSLAERLAVLKG 239
>ref|XP_850452.1| PREDICTED: similar to aquaporin 6 isoform 1 [Canis familiaris].
Length = 271
Score = 235 bits (600), Expect = 5e-62
Identities = 118/231 (51%), Positives = 159/231 (68%)
Frame = +1
Query: 151 KAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPA 330
+A+FAEFLAT ++VFFG+ SAL WP+ALPT+LQ+A+ F LA Q SGGHINPA
Sbjct: 12 RALFAEFLATGLYVFFGVGSALPWPTALPTVLQMAITFNLATAVAVQITWKTSGGHINPA 71
Query: 331 ITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNNTTPGQA 510
+TLA LVG+QISL RA+ Y + R L VN + ++T+ GQA
Sbjct: 72 VTLAFLVGSQISLPRAMAYVAAQLAGATLGAAVLYGVIPGDIRETLGVNMVRSSTSTGQA 131
Query: 511 VVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFG 690
V VE++LT QL LCIF+STDSR+TS GSPA IG+S++LGHL+GIYFTGCSMNPARSFG
Sbjct: 132 VAVELVLTLQLVLCIFASTDSRQTS--GSPATMIGISLSLGHLIGIYFTGCSMNPARSFG 189
Query: 691 PAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKGT 843
PA+++ +F HWVFW +Y ++LFP++ ++++R+A++ GT
Sbjct: 190 PAIIVGKFK-VHWVFWVGPLTGAVLASLIYNFILFPDTKTMAQRLAILMGT 239
>ref|XP_861496.1| PREDICTED: similar to aquaporin 6 isoform 2 [Canis familiaris].
Length = 276
Score = 228 bits (582), Expect = 6e-60
Identities = 118/236 (50%), Positives = 157/236 (66%), Gaps = 5/236 (2%)
Frame = +1
Query: 151 KAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPA 330
+A+FAEFLAT ++VFFG+ SAL WP+ALPT+LQ+A+ F LA Q SGGHINPA
Sbjct: 12 RALFAEFLATGLYVFFGVGSALPWPTALPTVLQMAITFNLATAVAVQITWKTSGGHINPA 71
Query: 331 ITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSL-----NNNT 495
+TLA LVG+QISL RA+ Y + R L VN + T
Sbjct: 72 VTLAFLVGSQISLPRAMAYVAAQLAGATLGAAVLYGVIPGDIRETLGVNMVGAGVPRRRT 131
Query: 496 TPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNP 675
+ GQAV VE++LT QL LCIF+STDSR+TS GSPA IG+S++LGHL+GIYFTGCSMNP
Sbjct: 132 STGQAVAVELVLTLQLVLCIFASTDSRQTS--GSPATMIGISLSLGHLIGIYFTGCSMNP 189
Query: 676 ARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKGT 843
ARSFGPA+++ +F HWVFW +Y ++LFP++ ++++R+A++ GT
Sbjct: 190 ARSFGPAIIVGKFK-VHWVFWVGPLTGAVLASLIYNFILFPDTKTMAQRLAILMGT 244
>ref|NP_001074369.1| lens fiber major intrinsic protein [Canis lupus familiaris].
Length = 263
Score = 225 bits (573), Expect = 6e-59
Identities = 113/238 (47%), Positives = 154/238 (64%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S +F +A+FAEF ATL +VFFGL ++L+W +LQ+ALAFGLA+ TL QA+G +
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWTPGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG H+NPA+T A LVG+Q+SLLRA Y RGNLA+N+L+
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
+ GQA VE+ LT Q LCIF++ D RR +GS AL++G S+TLGHL G+Y+TG
Sbjct: 123 PGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARSF PA++ F+ +HWV+W LY +LLFP S+SER++++KG
Sbjct: 183 MNPARSFAPAILTRNFT-NHWVYWVGPIIGGGLGSLLYDFLLFPRLKSVSERLSILKG 239
>ref|XP_855456.1| PREDICTED: similar to Aquaporin 4 (WCH4) (Mercurial-insensitive
water channel) (MIWC) [Canis familiaris].
Length = 398
Score = 182 bits (463), Expect = 3e-46
Identities = 103/250 (41%), Positives = 141/250 (56%), Gaps = 12/250 (4%)
Frame = +1
Query: 88 SRSRGPCRATMKKE--------VCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---L 234
+R G C K+E V + AF KAV AEFLA LIFV L S + W L
Sbjct: 82 ARQWGKCGPLCKRESIMVAFRGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL 141
Query: 235 PT-ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXX 411
P ++ I+L FGL+I T+ Q G +SGGHINPA+T+A++ +IS+ ++VFY
Sbjct: 142 PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYVAAQCLGA 201
Query: 412 XXXXXXXXXXXXXNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPV 591
+ G L V +++ N T G ++VE+I+TFQL IF+S DS+RT
Sbjct: 202 IIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVT 261
Query: 592 GSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXX 771
GS AL+IG SV +GHL I +TG SMNPARSFGPAV+M + +HW++W
Sbjct: 262 GSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWE-NHWIYWVGPIIGAVLAG 320
Query: 772 XLYFYLLFPN 801
LY Y+ P+
Sbjct: 321 GLYEYVFCPD 330
>ref|XP_855567.1| PREDICTED: aquaporin 1 [Canis familiaris].
Length = 271
Score = 172 bits (435), Expect = 6e-43
Identities = 99/247 (40%), Positives = 136/247 (55%), Gaps = 9/247 (3%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKW---------PSALPTILQIALAFGL 270
M E F +AV AEFLA ++FVF + SAL + A ++++LAFGL
Sbjct: 1 MASEFKKKLFWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGL 60
Query: 271 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXX 450
+I TLAQ++G +SG H+NPA+TL LL+ QIS+LRAV Y
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSS 120
Query: 451 NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTL 630
+L N L GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV L
Sbjct: 121 LPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGLSVAL 180
Query: 631 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLS 810
GHL+ I +TGC +NPARSFG +V+ + F HW+FW +Y ++L P S
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFK-DHWIFWVGPFIGGALAVLIYDFILAPRSSD 239
Query: 811 LSERVAV 831
L++RV V
Sbjct: 240 LTDRVKV 246
>ref|NP_001003130.1| aquaporin-1 [Canis lupus familiaris].
Length = 271
Score = 172 bits (435), Expect = 6e-43
Identities = 99/247 (40%), Positives = 136/247 (55%), Gaps = 9/247 (3%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKW---------PSALPTILQIALAFGL 270
M E F +AV AEFLA ++FVF + SAL + A ++++LAFGL
Sbjct: 1 MASEFKKKLFWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGL 60
Query: 271 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXX 450
+I TLAQ++G +SG H+NPA+TL LL+ QIS+LRAV Y
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSS 120
Query: 451 NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTL 630
+L N L GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV L
Sbjct: 121 LPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGLSVAL 180
Query: 631 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLS 810
GHL+ I +TGC +NPARSFG +V+ + F HW+FW +Y ++L P S
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFK-DHWIFWVGPFIGGALAVLIYDFILAPRSSD 239
Query: 811 LSERVAV 831
L++RV V
Sbjct: 240 LTDRVKV 246
>ref|XP_850126.1| PREDICTED: similar to aquaporin 8 isoform 1 [Canis familiaris].
Length = 263
Score = 100 bits (249), Expect = 2e-21
Identities = 69/201 (34%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Frame = +1
Query: 145 FLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 324
FL+ E L + +F+F G S ++ + LQ ALA GLA+G + LG +SGGH N
Sbjct: 36 FLQPCLVELLGSALFIFIGCLSVIENGTDTGR-LQPALAHGLALGLIIATLGNISGGHFN 94
Query: 325 PAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNNTTPG 504
PA++LA + ++L+ + Y N + + PG
Sbjct: 95 PAVSLAATLIGGLNLVMLLPYWIAQLCGGLIGAALAKAVSPEERFWNASGAAFVTVQEPG 154
Query: 505 Q---AVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNP 675
Q AVV E+ILT LAL + + +T +P SIG +VT+ L G +G MNP
Sbjct: 155 QVVGAVVAELILTTLLALAVCMGAINEKTQGPLAP-FSIGFAVTVDILAGGAVSGACMNP 213
Query: 676 ARSFGPAVVMNRFSPSHWVFW 738
AR+FGPAVV N + HW++W
Sbjct: 214 ARAFGPAVVANHWD-FHWIYW 233
>ref|XP_860694.1| PREDICTED: similar to aquaporin 8 isoform 2 [Canis familiaris].
Length = 88
Score = 49.7 bits (117), Expect = 5e-06
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1
Query: 607 SIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFW 738
SIG +VT+ L G +G MNPAR+FGPAVV N + HW++W
Sbjct: 16 SIGFAVTVDILAGGAVSGACMNPARAFGPAVVANHWD-FHWIYW 58
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,874,670
Number of extensions: 1163712
Number of successful extensions: 6857
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6694
Number of HSP's successfully gapped: 10
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014280
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178089.1| aquaporin-5 [Bos taurus]. 389 e-108
Alignment gi|XP_002687326.1| PREDICTED: aquaporin 5-like [Bos taurus]. 389 e-108
Alignment gi|NP_001094669.1| aquaporin-2 [Bos taurus]. 276 2e-74
Alignment gi|XP_002687325.1| PREDICTED: aquaporin 6, kidney specific-like... 227 2e-59
Alignment gi|XP_606158.2| PREDICTED: aquaporin 6, kidney specific-like [B... 227 2e-59
Alignment gi|NP_776362.1| lens fiber major intrinsic protein [Bos taurus]. 223 2e-58
Alignment gi|NP_851346.1| aquaporin-4 [Bos taurus]. 181 1e-45
Alignment gi|NP_777127.1| aquaporin-1 [Bos taurus]. 172 6e-43
Alignment gi|NP_001193536.1| aquaporin-8 [Bos taurus]. 90 4e-18
>ref|NP_001178089.1| aquaporin-5 [Bos taurus].
Length = 265
Score = 389 bits (998), Expect = e-108
Identities = 199/265 (75%), Positives = 215/265 (81%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 297
MKKEVCS+AFLKAVFAEFLATLIFVFFGL SALKWPSALP++LQI+LAFGLAIGT+AQAL
Sbjct: 1 MKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPSVLQISLAFGLAIGTMAQAL 60
Query: 298 GPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVN 477
GPVSGGH+NPAITLALLVGNQISLLRAVFY NARGNLAVN
Sbjct: 61 GPVSGGHMNPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAAILYGLAPYNARGNLAVN 120
Query: 478 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 657
+LNNNTT GQAVV EMILTFQLALC+FSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT
Sbjct: 121 ALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 180
Query: 658 GCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVK 837
GCSMNPARSFGP+V+MNRFS +HWVFW +YFYLLFP+SLSLS+R A++K
Sbjct: 181 GCSMNPARSFGPSVIMNRFSSAHWVFWVGPIVGAAVAAIIYFYLLFPHSLSLSDRAAILK 240
Query: 838 GTYXXXXXXXXXXXXRKKTMELTAH 912
GTY RKKTMELTAH
Sbjct: 241 GTYEPDEDWEESQEERKKTMELTAH 265
>ref|XP_002687326.1| PREDICTED: aquaporin 5-like [Bos taurus].
Length = 265
Score = 389 bits (998), Expect = e-108
Identities = 199/265 (75%), Positives = 215/265 (81%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 297
MKKEVCS+AFLKAVFAEFLATLIFVFFGL SALKWPSALP++LQI+LAFGLAIGT+AQAL
Sbjct: 1 MKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPSVLQISLAFGLAIGTMAQAL 60
Query: 298 GPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVN 477
GPVSGGH+NPAITLALLVGNQISLLRAVFY NARGNLAVN
Sbjct: 61 GPVSGGHMNPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAAILYGLAPYNARGNLAVN 120
Query: 478 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 657
+LNNNTT GQAVV EMILTFQLALC+FSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT
Sbjct: 121 ALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 180
Query: 658 GCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVK 837
GCSMNPARSFGP+V+MNRFS +HWVFW +YFYLLFP+SLSLS+R A++K
Sbjct: 181 GCSMNPARSFGPSVIMNRFSSAHWVFWVGPIVGAAVAAIIYFYLLFPHSLSLSDRAAILK 240
Query: 838 GTYXXXXXXXXXXXXRKKTMELTAH 912
GTY RKKTMELTAH
Sbjct: 241 GTYEPDEDWEESQEERKKTMELTAH 265
>ref|NP_001094669.1| aquaporin-2 [Bos taurus].
Length = 271
Score = 276 bits (706), Expect = 2e-74
Identities = 144/238 (60%), Positives = 169/238 (71%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S+AF +AV AEFLATL+FVFFGL SAL WP ALP++LQIA+AFGLAIGTL QALG V
Sbjct: 3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLAIGTLVQALGHV 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG HINPA+T+A LVG +S LRAVFY RG+LAVN+LN
Sbjct: 63 SGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALN 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
NN+T GQAV VE+ LT QL LCIF+STD RR VG+PALSIG SV LGHL+GI++TGCS
Sbjct: 123 NNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPALSIGFSVALGHLLGIHYTGCS 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARS PA+V +F HWVFW LY Y+LFP + SLSER+AV+KG
Sbjct: 183 MNPARSLAPAIVTGKFD-DHWVFWIGPLVGAIVASLLYNYVLFPPAKSLSERLAVLKG 239
>ref|XP_002687325.1| PREDICTED: aquaporin 6, kidney specific-like [Bos taurus].
Length = 281
Score = 227 bits (578), Expect = 2e-59
Identities = 117/243 (48%), Positives = 159/243 (65%), Gaps = 2/243 (0%)
Frame = +1
Query: 121 KKEVCSL--AFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQA 294
K VC L +A+FAEFLAT ++VFFG+ SAL+WP LP++LQIA+ F LA + Q
Sbjct: 10 KMLVCRLWMTISRALFAEFLATGLYVFFGVGSALRWPLVLPSVLQIAITFNLATAVIVQI 69
Query: 295 LGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAV 474
SG H+NPA+TLA LVG+ ISL RAV Y + R N V
Sbjct: 70 TWKASGAHVNPAVTLAFLVGSHISLPRAVAYVAAQLAGATAGAALLYGVTPGDIRENFGV 129
Query: 475 NSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYF 654
N + ++T+ GQAV VE+ILT QL LC+F+STDSR+T+ GSPA +IG SV +GHL+GIYF
Sbjct: 130 NMVRSSTSTGQAVAVELILTLQLVLCVFASTDSRQTT--GSPAATIGASVAVGHLIGIYF 187
Query: 655 TGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVV 834
TGCSMNPARSFG AV++ +F HW+FW +Y ++LFP++ +L++R+A++
Sbjct: 188 TGCSMNPARSFGSAVIVGKFE-VHWIFWVGPLTGAVLASLIYNFILFPDTKTLAQRLAIL 246
Query: 835 KGT 843
G+
Sbjct: 247 TGS 249
>ref|XP_606158.2| PREDICTED: aquaporin 6, kidney specific-like [Bos taurus].
Length = 281
Score = 227 bits (578), Expect = 2e-59
Identities = 117/243 (48%), Positives = 159/243 (65%), Gaps = 2/243 (0%)
Frame = +1
Query: 121 KKEVCSL--AFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQA 294
K VC L +A+FAEFLAT ++VFFG+ SAL+WP LP++LQIA+ F LA + Q
Sbjct: 10 KMLVCRLWMTISRALFAEFLATGLYVFFGVGSALRWPLVLPSVLQIAITFNLATAVIVQI 69
Query: 295 LGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAV 474
SG H+NPA+TLA LVG+ ISL RAV Y + R N V
Sbjct: 70 TWKASGAHVNPAVTLAFLVGSHISLPRAVAYVAAQLAGATAGAALLYGVTPGDIRENFGV 129
Query: 475 NSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYF 654
N + ++T+ GQAV VE+ILT QL LC+F+STDSR+T+ GSPA +IG SV +GHL+GIYF
Sbjct: 130 NMVRSSTSTGQAVAVELILTLQLVLCVFASTDSRQTT--GSPAATIGASVAVGHLIGIYF 187
Query: 655 TGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVV 834
TGCSMNPARSFG AV++ +F HW+FW +Y ++LFP++ +L++R+A++
Sbjct: 188 TGCSMNPARSFGSAVIVGKFE-VHWIFWVGPLTGAVLASLIYNFILFPDTKTLAQRLAIL 246
Query: 835 KGT 843
G+
Sbjct: 247 TGS 249
>ref|NP_776362.1| lens fiber major intrinsic protein [Bos taurus].
Length = 263
Score = 223 bits (569), Expect = 2e-58
Identities = 111/239 (46%), Positives = 156/239 (65%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S +F +A+ AEF A+L +VFFGL ++L+W +LQ+ALAFGLA+ TL QA+G +
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG H+NPA+T A LVG+Q+SLLRA+ Y RGNLA+N+L+
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
+ GQA +VE+ LT Q LCIF++ D RR +GS AL++G S+TLGHL G+Y+TG
Sbjct: 123 PGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKGT 843
MNPARSF PA++ F+ +HWV+W LY +LLFP S+SER++++KG+
Sbjct: 183 MNPARSFAPAILTRNFT-NHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSERLSILKGS 240
>ref|NP_851346.1| aquaporin-4 [Bos taurus].
Length = 323
Score = 181 bits (458), Expect = 1e-45
Identities = 98/230 (42%), Positives = 136/230 (59%), Gaps = 4/230 (1%)
Frame = +1
Query: 124 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---LPT-ILQIALAFGLAIGTLAQ 291
K V + F KAV AEFLA LIFV L S + W A LP ++ I+L FGL+I T+ Q
Sbjct: 27 KGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLPVDMVLISLCFGLSIATMVQ 86
Query: 292 ALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLA 471
G +SGGHINPA+T+A++ +IS+ ++VFY + G L
Sbjct: 87 CFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLG 146
Query: 472 VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIY 651
V +++ N + G ++VE+I+TFQL IF+S DS+RT GS AL+IG+SV +GHL I
Sbjct: 147 VTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGISVAIGHLFAIN 206
Query: 652 FTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPN 801
+TG SMNPARSFGPAV+M + +HW++W LY Y+ P+
Sbjct: 207 YTGASMNPARSFGPAVIMGNWE-NHWIYWVGPIIGAVLAGGLYEYVFCPD 255
>ref|NP_777127.1| aquaporin-1 [Bos taurus].
Length = 271
Score = 172 bits (435), Expect = 6e-43
Identities = 96/247 (38%), Positives = 138/247 (55%), Gaps = 9/247 (3%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKW---------PSALPTILQIALAFGL 270
M E F +AV AEFLA ++F+F + SAL + A+ ++++LAFGL
Sbjct: 1 MASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGL 60
Query: 271 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXX 450
+I TLAQ++G +SG H+NPA+TL LL+ QIS+LRA+ Y
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS 120
Query: 451 NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTL 630
+L +N+L GQ + +E+I T QL LC+ ++TD RR GS L+IG SV L
Sbjct: 121 LPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVAL 180
Query: 631 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLS 810
GHL+ I +TGC +NPARSFG +V+ + F HW+FW +Y ++L P S
Sbjct: 181 GHLLAIDYTGCGINPARSFGSSVITHNFQ-DHWIFWVGPFIGAALAVLIYDFILAPRSSD 239
Query: 811 LSERVAV 831
L++RV V
Sbjct: 240 LTDRVKV 246
>ref|NP_001193536.1| aquaporin-8 [Bos taurus].
Length = 263
Score = 89.7 bits (221), Expect = 4e-18
Identities = 66/195 (33%), Positives = 93/195 (47%), Gaps = 4/195 (2%)
Frame = +1
Query: 166 EFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLAL 345
E L + +F+F G S ++ LQ ALA GLA+G + LG +SGGH NPA++LA
Sbjct: 43 ELLGSALFIFIGCLSVIENGPDTGR-LQPALAHGLALGLVIATLGNISGGHFNPAVSLAA 101
Query: 346 LVGNQISLLRAVFY----XXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNNTTPGQAV 513
++ + L Y NA G V + G AV
Sbjct: 102 MLVGGLKLTMLFPYWISQLCGGLIGATLAKAVSPEDRFWNATGAAFVTVQESEQVAG-AV 160
Query: 514 VVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 693
V E+ILT L L + + + +T +P IG SVT+ L G +G MNPAR+FGP
Sbjct: 161 VAEVILTTLLVLTVCTGAINEKTLGPLAP-FCIGFSVTVDILAGGAVSGACMNPARAFGP 219
Query: 694 AVVMNRFSPSHWVFW 738
A+V N + HW++W
Sbjct: 220 AMVANHWD-YHWIYW 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,338,207
Number of extensions: 1124230
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6251
Number of HSP's successfully gapped: 9
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103894.1| aquaporin-5 [Sus scrofa]. 415 e-116
Alignment gi|NP_001121948.1| aquaporin-2 [Sus scrofa]. 278 4e-75
Alignment gi|NP_001121939.1| aquaporin-6 [Sus scrofa]. 232 2e-61
Alignment gi|XP_003126321.1| PREDICTED: lens fiber major intrinsic protei... 224 6e-59
Alignment gi|NP_001103893.1| aquaporin-4 [Sus scrofa]. 181 5e-46
Alignment gi|NP_999619.1| aquaporin-1 [Sus scrofa]. 173 1e-43
Alignment gi|XP_003126176.2| PREDICTED: aquaporin-2-like [Sus scrofa]. 149 3e-36
Alignment gi|XP_003126179.2| PREDICTED: hypothetical protein LOC100518193... 122 4e-28
Alignment gi|NP_001106153.1| aquaporin 8 [Sus scrofa]. 97 1e-20
Alignment gi|NP_001106154.1| aquaporin-9 [Sus scrofa]. 59 4e-09
>ref|NP_001103894.1| aquaporin-5 [Sus scrofa].
Length = 265
Score = 415 bits (1067), Expect = e-116
Identities = 220/265 (83%), Positives = 220/265 (83%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 297
MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL
Sbjct: 1 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 60
Query: 298 GPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVN 477
GPVSGGHINPAITLALLVGNQISLLRAVFY NARGNLAVN
Sbjct: 61 GPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNLAVN 120
Query: 478 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 657
SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT
Sbjct: 121 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 180
Query: 658 GCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVK 837
GCSMNPARSFGPAVVMNRFSPSHWVFW LYFYLLFPNSLSLSERVAVVK
Sbjct: 181 GCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAAVAAILYFYLLFPNSLSLSERVAVVK 240
Query: 838 GTYXXXXXXXXXXXXRKKTMELTAH 912
GTY RKKTMELTAH
Sbjct: 241 GTYESEEDWEEQREERKKTMELTAH 265
>ref|NP_001121948.1| aquaporin-2 [Sus scrofa].
Length = 271
Score = 278 bits (711), Expect = 4e-75
Identities = 143/238 (60%), Positives = 172/238 (72%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S+AF +AVFAEFLATL+FVFFGL SAL WP ALP++LQIA+AFGLAIGTL QALG +
Sbjct: 3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLAIGTLVQALGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG HINPA+T+A LVG +S LRA FY + RG+LAVN+L+
Sbjct: 63 SGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEITPPDIRGDLAVNALS 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
NN+T GQAV VE+ LT QL LCIF+STD RR +G+PALSIG SV LGHL+GI++TGCS
Sbjct: 123 NNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNLGTPALSIGFSVALGHLLGIHYTGCS 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARS PAVV+ +F HWVFW LY Y+LFP+S SLSER+AV+KG
Sbjct: 183 MNPARSLAPAVVIGKFD-DHWVFWIGPLVGAILASLLYNYVLFPSSKSLSERLAVLKG 239
>ref|NP_001121939.1| aquaporin-6 [Sus scrofa].
Length = 281
Score = 232 bits (592), Expect = 2e-61
Identities = 120/247 (48%), Positives = 162/247 (65%), Gaps = 2/247 (0%)
Frame = +1
Query: 109 RATMKKEVCSL--AFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGT 282
R+ K VC L KA+FAEFLAT ++VFFG+ SAL+WP ALP++LQIA+ F LA
Sbjct: 6 RSLAKTLVCRLWMTVSKALFAEFLATGLYVFFGVGSALRWPLALPSVLQIAITFNLATAM 65
Query: 283 LAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARG 462
+ Q SG H+NPA+TLA LVG+QISL RAV Y + R
Sbjct: 66 IVQVTWKASGAHVNPAVTLAYLVGSQISLPRAVAYVAAQLAGATVGAALLYGVIPEDIRE 125
Query: 463 NLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLV 642
L VN + N+ + GQAV VE++LT QL LC+F+STDSR+ + GSPA +IG SV +GHL+
Sbjct: 126 TLGVNVVRNSVSIGQAVAVELVLTLQLVLCVFASTDSRQAT--GSPAATIGASVAVGHLI 183
Query: 643 GIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSER 822
GIYFTGCSMNPARSFGPA+++ +F HW+FW +Y ++LFP++ +L++R
Sbjct: 184 GIYFTGCSMNPARSFGPAIIVGKFE-VHWIFWVGPLTGAVLASLIYNFILFPDTKTLAQR 242
Query: 823 VAVVKGT 843
+A++ GT
Sbjct: 243 LAILTGT 249
>ref|XP_003126321.1| PREDICTED: lens fiber major intrinsic protein-like [Sus scrofa].
Length = 263
Score = 224 bits (571), Expect = 6e-59
Identities = 112/238 (47%), Positives = 154/238 (64%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S +F +A+FAEF ATL +VFFGL ++L+W +LQ+ALAFGLA+ TL QA+G +
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWTPGPLHVLQVALAFGLALATLVQAVGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG H+NPA+T A LVG+Q+SL RA Y RGNLA+N+L+
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLFRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
+ GQA +VE+ LT Q LCIF++ D RR +GS AL++G S+TLGHL G+Y+TG
Sbjct: 123 PGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARSF PA++ F+ +HWV+W LY +LLFP S+SER++++KG
Sbjct: 183 MNPARSFAPAILTRSFT-NHWVYWVGPIIGAGLGSLLYDFLLFPRLKSVSERLSILKG 239
>ref|NP_001103893.1| aquaporin-4 [Sus scrofa].
Length = 301
Score = 181 bits (460), Expect = 5e-46
Identities = 99/230 (43%), Positives = 136/230 (59%), Gaps = 4/230 (1%)
Frame = +1
Query: 124 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---LPT-ILQIALAFGLAIGTLAQ 291
K V + AF KAV AEFLA LIFV L S + W A LP ++ I+L FGL+I T+ Q
Sbjct: 5 KGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLPVDMVLISLCFGLSIATMVQ 64
Query: 292 ALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLA 471
G +SGGHINPA+T+A++ +IS+ ++VFY + G L
Sbjct: 65 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLG 124
Query: 472 VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIY 651
V +++ N + G ++VE+I+TFQL IF+S DS+RT GS AL+IG SV +GHL I
Sbjct: 125 VTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN 184
Query: 652 FTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPN 801
+TG SMNPARSFGPAV+M + +HW++W LY Y+ P+
Sbjct: 185 YTGASMNPARSFGPAVIMGNWE-NHWIYWVGPIIGAVLAGGLYEYVFCPD 233
>ref|NP_999619.1| aquaporin-1 [Sus scrofa].
Length = 271
Score = 173 bits (439), Expect = 1e-43
Identities = 101/247 (40%), Positives = 138/247 (55%), Gaps = 9/247 (3%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASAL--KWP-------SALPTILQIALAFGL 270
M E F +AV AEFLA +F+F + SAL ++P A ++++LAFGL
Sbjct: 1 MASEFKKKIFWRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGL 60
Query: 271 AIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXX 450
+I TLAQ++G +SG H+NPA+TL LL+ QIS+LRAV Y
Sbjct: 61 SIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSS 120
Query: 451 NARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTL 630
+L +NSL GQ + +E+I T QL LC+ ++TD RR GS L+IG SV L
Sbjct: 121 LPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGFSVAL 180
Query: 631 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLS 810
GHL+ I +TGC +NPARSFG AV+ + F HWVFW +Y ++L P S
Sbjct: 181 GHLLAIDYTGCGINPARSFGSAVITHNFQ-DHWVFWVGPFIGGALAVLIYDFILAPRSSD 239
Query: 811 LSERVAV 831
L++RV V
Sbjct: 240 LTDRVKV 246
>ref|XP_003126176.2| PREDICTED: aquaporin-2-like [Sus scrofa].
Length = 207
Score = 149 bits (376), Expect = 3e-36
Identities = 74/120 (61%), Positives = 89/120 (74%)
Frame = +1
Query: 481 LNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTG 660
L+NN+T GQAV VE+ LT QL LCIF+STD RR +G+PALSIG SV LGHL+GI++TG
Sbjct: 35 LSNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNLGTPALSIGFSVALGHLLGIHYTG 94
Query: 661 CSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
CSMNPARS PAVV+ +F HWVFW LY Y+LFP+S SLSER+AV+KG
Sbjct: 95 CSMNPARSLAPAVVIGKFD-DHWVFWIGPLVGAILASLLYNYVLFPSSKSLSERLAVLKG 153
>ref|XP_003126179.2| PREDICTED: hypothetical protein LOC100518193 [Sus scrofa].
Length = 470
Score = 122 bits (305), Expect = 4e-28
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 7/127 (5%)
Frame = +1
Query: 157 VFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAIT 336
V EFLATL+FVFFGL SAL WP ALP++LQIA+AFGLAIGTL QALG +SG HINPA+T
Sbjct: 334 VVLEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVT 393
Query: 337 LALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN-------NNT 495
+A LVG +S LRA FY + RG+LAVN+++ +
Sbjct: 394 VACLVGCHVSFLRAAFYVAAQLLGAVAGAALLHEITPPDIRGDLAVNAVSSQNFFPFSRA 453
Query: 496 TPGQAVV 516
PG+++V
Sbjct: 454 EPGESLV 460
>ref|NP_001106153.1| aquaporin 8 [Sus scrofa].
Length = 263
Score = 97.1 bits (240), Expect = 1e-20
Identities = 67/201 (33%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Frame = +1
Query: 145 FLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 324
+L+ E L + +F+F G S ++ +LQ ALA GLA+G + LG +SGGH N
Sbjct: 36 YLQPCLVELLGSALFIFIGCLSVIE-NRPDTGLLQPALAHGLALGLVIATLGNISGGHFN 94
Query: 325 PAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNNTTPG 504
PA++LA ++ + L + Y N + + PG
Sbjct: 95 PAVSLAAMLVGGLHLTMLLPYWISQLCGGLIGAALAKAVSPEERFWNASGAAFVTVQEPG 154
Query: 505 Q---AVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNP 675
Q AVV E+ILT L L + +++T +P SIG SVT+ L G +G MNP
Sbjct: 155 QVVGAVVAEIILTTLLVLAVCMGAINKKTQGPLAP-FSIGFSVTVDILAGGAVSGACMNP 213
Query: 676 ARSFGPAVVMNRFSPSHWVFW 738
AR+FGPAVV + + HW++W
Sbjct: 214 ARAFGPAVVAS-YWDFHWIYW 233
>ref|NP_001106154.1| aquaporin-9 [Sus scrofa].
Length = 295
Score = 58.9 bits (141), Expect = 4e-09
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 20/215 (9%)
Frame = +1
Query: 109 RATMKKEVCSLAFLKAVFAEFLATLIFVFFG---LASALKWPSALPTILQIALAFGLAIG 279
++ ++ V + K + +EFL T I + G +A A+ IL I + F +A+
Sbjct: 10 KSLKQRLVLKNSLAKEMLSEFLGTFIMIVLGCGSVAQAVLSRGHFGGILTINIGFPMAVV 69
Query: 280 TLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXN-- 453
A G VSGGHINPA++ AL + ++ + FY
Sbjct: 70 MAIYATGGVSGGHINPAVSFALCLFGRMKWSKLPFYMGAQFLGAFAGAATLFGIYYDALM 129
Query: 454 --ARGNLAVNSLNNN-----TTPG------QAVVVEMILTFQLALCIFSSTDSRRTS-PV 591
A G L + N T P A +++ T L + +F+ DSR P
Sbjct: 130 SFADGKLLITGENATAQIFATYPAPYLSLINAFADQVVATMFLLIIVFAVFDSRNLGVPR 189
Query: 592 GSPALSIG-LSVTLGHLVGIYFTGCSMNPARSFGP 693
G + IG L V + +G+ +GC+MNPAR P
Sbjct: 190 GLQPIVIGLLIVVIASSLGMN-SGCAMNPARDLSP 223
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,566,605
Number of extensions: 734119
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4205
Number of HSP's successfully gapped: 10
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033831.1| aquaporin-5 [Mus musculus]. 396 e-110
Alignment gi|NP_033829.3| aquaporin-2 [Mus musculus]. 273 1e-73
Alignment gi|NP_032626.2| lens fiber major intrinsic protein [Mus musculu... 224 7e-59
Alignment gi|NP_780296.1| aquaporin-6 [Mus musculus]. 223 1e-58
Alignment gi|NP_033830.2| aquaporin-4 [Mus musculus]. 186 3e-47
Alignment gi|NP_031498.1| aquaporin-1 [Mus musculus]. 174 8e-44
Alignment gi|NP_001102515.1| aquaporin-8 isoform 2 [Mus musculus]. 89 6e-18
Alignment gi|NP_031500.1| aquaporin-8 isoform 1 [Mus musculus]. 89 6e-18
>ref|NP_033831.1| aquaporin-5 [Mus musculus].
Length = 265
Score = 396 bits (1017), Expect = e-110
Identities = 205/265 (77%), Positives = 217/265 (81%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 297
MKKEVCS+AF KAVFAEFLATLIFVFFGL SALKWPSALPTILQI++AFGLAIGTLAQAL
Sbjct: 1 MKKEVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPTILQISIAFGLAIGTLAQAL 60
Query: 298 GPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVN 477
GPVSGGHINPAITLALL+GNQISLLRA+FY NARGNLAVN
Sbjct: 61 GPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNLAVN 120
Query: 478 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 657
+L+NNTTPG+AVVVE+ILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT
Sbjct: 121 ALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 180
Query: 658 GCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVK 837
GCSMNPARSFGPAVVMNRFSPSHWVFW LYFYLLFP+SLSL +RVAVVK
Sbjct: 181 GCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAVLAAILYFYLLFPSSLSLHDRVAVVK 240
Query: 838 GTYXXXXXXXXXXXXRKKTMELTAH 912
GTY RKKT+ELTAH
Sbjct: 241 GTYEPEEDWEDHREERKKTIELTAH 265
>ref|NP_033829.3| aquaporin-2 [Mus musculus].
Length = 271
Score = 273 bits (699), Expect = 1e-73
Identities = 143/238 (60%), Positives = 168/238 (70%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S+AF +AV AEFLATL+FVFFGL SAL+W S+ P++LQIA+AFGL IGTL QALG V
Sbjct: 3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPSVLQIAVAFGLGIGTLVQALGHV 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG HINPA+T+A LVG +S LRA FY RG+LAVN+L+
Sbjct: 63 SGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVNALH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
NN T GQAV VE+ LT QL LCIF+STD RR+ +GSPALSIG SVTLGHL+GIYFTGCS
Sbjct: 123 NNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGSPALSIGFSVTLGHLLGIYFTGCS 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARS PAVV +F HWVFW LY YLLFP++ SL ER+AV+KG
Sbjct: 183 MNPARSLAPAVVTGKFD-DHWVFWIGPLVGAVIGSLLYNYLLFPSTKSLQERLAVLKG 239
>ref|NP_032626.2| lens fiber major intrinsic protein [Mus musculus].
Length = 263
Score = 224 bits (572), Expect = 7e-59
Identities = 113/238 (47%), Positives = 153/238 (64%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S +F +A+FAEF ATL +VFFGL ++L+W +LQ+ALAFGLA+ TL Q +G +
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQTVGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG H+NPA+T A LVG+Q+SLLRA Y RGNLA+N+L+
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
+ GQA VE+ LT Q LCIF++ D RR +GS AL++G S+TLGHL G+Y+TG
Sbjct: 123 AGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVALAVGFSLTLGHLFGMYYTGAG 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARSF PA++ FS +HWV+W LY +LLFP S+SER++++KG
Sbjct: 183 MNPARSFAPAILTRNFS-NHWVYWVGPIIGGGLGSLLYDFLLFPRLKSVSERLSILKG 239
>ref|NP_780296.1| aquaporin-6 [Mus musculus].
Length = 293
Score = 223 bits (569), Expect = 1e-58
Identities = 118/252 (46%), Positives = 159/252 (63%), Gaps = 10/252 (3%)
Frame = +1
Query: 118 MKKEVCSLAFL----------KAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFG 267
M+ +CS A+L KA+FAEFLAT ++VFFG+ S L WP ALP++LQIA+ F
Sbjct: 1 MEPGLCSRAYLLVGGLWTAISKALFAEFLATGLYVFFGVGSVLPWPVALPSVLQIAITFN 60
Query: 268 LAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXX 447
LA T Q SG H NPA+TLA LVG+ ISL RA+ Y
Sbjct: 61 LATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTP 120
Query: 448 XNARGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVT 627
R L VN ++N+T+ GQAV VE++LT QL LC+F+S D R+T + SPA IG SV
Sbjct: 121 GGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQT--LASPAAMIGTSVA 178
Query: 628 LGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSL 807
LGHL+GIYFTGCSMNPARSFGPAV++ +F+ HW+FW +Y ++LFP++
Sbjct: 179 LGHLIGIYFTGCSMNPARSFGPAVIVGKFA-VHWIFWVGPLTGAVLASLIYNFILFPDTK 237
Query: 808 SLSERVAVVKGT 843
++++R+A++ GT
Sbjct: 238 TVAQRLAILVGT 249
>ref|NP_033830.2| aquaporin-4 [Mus musculus].
Length = 323
Score = 186 bits (471), Expect = 3e-47
Identities = 100/230 (43%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
Frame = +1
Query: 124 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---LPT-ILQIALAFGLAIGTLAQ 291
K V + AF KAV AEFLATLIFV G+ S + W + LP ++ I+L FGL+I T+ Q
Sbjct: 27 KGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQ 86
Query: 292 ALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLA 471
G +SGGHINPA+T+A++ +IS+ ++VFY + G L
Sbjct: 87 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLG 146
Query: 472 VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIY 651
V +++ N T G ++VE+I+TFQL IF+S DS+RT GS AL+IG SV +GHL I
Sbjct: 147 VTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN 206
Query: 652 FTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPN 801
+TG SMNPARSFGPAV+M ++ +HW++W LY Y+ P+
Sbjct: 207 YTGASMNPARSFGPAVIMGNWA-NHWIYWVGPIMGAVLAGALYEYVFCPD 255
>ref|NP_031498.1| aquaporin-1 [Mus musculus].
Length = 269
Score = 174 bits (442), Expect = 8e-44
Identities = 101/245 (41%), Positives = 139/245 (56%), Gaps = 7/245 (2%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALP---TILQ----IALAFGLAI 276
M E+ F +AV AEFLA +FVF + SAL + L T++Q ++LAFGL+I
Sbjct: 1 MASEIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSI 60
Query: 277 GTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNA 456
TLAQ++G +SG H+NPA+TL LL+ QIS+LRAV Y
Sbjct: 61 ATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLV 120
Query: 457 RGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGH 636
+L N L + GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV LGH
Sbjct: 121 DNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGH 180
Query: 637 LVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLS 816
L+ I +TGC +NPARSFG AV+ FS +HW+FW +Y ++L P S +
Sbjct: 181 LLAIDYTGCGINPARSFGSAVLTRNFS-NHWIFWVGPFIGGALAVLIYDFILAPRSSDFT 239
Query: 817 ERVAV 831
+R+ V
Sbjct: 240 DRMKV 244
>ref|NP_001102515.1| aquaporin-8 isoform 2 [Mus musculus].
Length = 260
Score = 89.0 bits (219), Expect = 6e-18
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 4/202 (1%)
Frame = +1
Query: 145 FLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 324
+++ E + + +F+F G S ++ S +LQ ALA GLA+G + LG +SGGH N
Sbjct: 33 YVQPCIVELVGSALFIFIGCLSVIE-NSPNTGLLQPALAHGLALGLIIATLGNISGGHFN 91
Query: 325 PAITLALLVGNQISLLRAVFY----XXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNN 492
PA++LA+ V + + + Y NA G A +
Sbjct: 92 PAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASG-AAFAIVQEQ 150
Query: 493 TTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMN 672
+A+ +E+ILT L L + + +T +P SIG SV + L G +G MN
Sbjct: 151 EQVAEALGIEIILTMLLVLAVCMGAVNEKTMGPLAP-FSIGFSVIVDILAGGSISGACMN 209
Query: 673 PARSFGPAVVMNRFSPSHWVFW 738
PAR+FGPA VM + HW++W
Sbjct: 210 PARAFGPA-VMAGYWDFHWIYW 230
>ref|NP_031500.1| aquaporin-8 isoform 1 [Mus musculus].
Length = 261
Score = 89.0 bits (219), Expect = 6e-18
Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 4/202 (1%)
Frame = +1
Query: 145 FLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHIN 324
+++ E + + +F+F G S ++ S +LQ ALA GLA+G + LG +SGGH N
Sbjct: 34 YVQPCIVELVGSALFIFIGCLSVIE-NSPNTGLLQPALAHGLALGLIIATLGNISGGHFN 92
Query: 325 PAITLALLVGNQISLLRAVFY----XXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNN 492
PA++LA+ V + + + Y NA G A +
Sbjct: 93 PAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASG-AAFAIVQEQ 151
Query: 493 TTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMN 672
+A+ +E+ILT L L + + +T +P SIG SV + L G +G MN
Sbjct: 152 EQVAEALGIEIILTMLLVLAVCMGAVNEKTMGPLAP-FSIGFSVIVDILAGGSISGACMN 210
Query: 673 PARSFGPAVVMNRFSPSHWVFW 738
PAR+FGPA VM + HW++W
Sbjct: 211 PARAFGPA-VMAGYWDFHWIYW 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,841,979
Number of extensions: 911484
Number of successful extensions: 4543
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4478
Number of HSP's successfully gapped: 8
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001642.1| aquaporin-5 [Homo sapiens]. 396 e-110
Alignment gi|NP_000477.1| aquaporin-2 [Homo sapiens]. 272 3e-73
Alignment gi|NP_001643.2| aquaporin-6 [Homo sapiens]. 226 3e-59
Alignment gi|NP_036196.1| lens fiber major intrinsic protein [Homo sapien... 223 3e-58
Alignment gi|NP_004019.1| aquaporin-4 isoform b [Homo sapiens]. 181 1e-45
Alignment gi|NP_001641.1| aquaporin-4 isoform a [Homo sapiens]. 181 1e-45
Alignment gi|NP_932766.1| aquaporin-1 isoform 1 [Homo sapiens]. 179 4e-45
Alignment gi|NP_001171991.1| aquaporin-1 isoform 4 [Homo sapiens]. 105 5e-23
Alignment gi|NP_001171990.1| aquaporin-1 isoform 3 [Homo sapiens]. 105 5e-23
Alignment gi|NP_001171989.1| aquaporin-1 isoform 2 [Homo sapiens]. 105 5e-23
>ref|NP_001642.1| aquaporin-5 [Homo sapiens].
Length = 265
Score = 396 bits (1018), Expect = e-110
Identities = 207/263 (78%), Positives = 215/263 (81%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQAL 297
MKKEVCS+AFLKAVFAEFLATLIFVFFGL SALKWPSALPTILQIALAFGLAIGTLAQAL
Sbjct: 1 MKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQAL 60
Query: 298 GPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVN 477
GPVSGGHINPAITLALLVGNQISLLRA FY NARGNLAVN
Sbjct: 61 GPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVN 120
Query: 478 SLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 657
+LNNNTT GQA+VVE+ILTFQLALCIF+STDSRRTSPVGSPALSIGLSVTLGHLVGIYFT
Sbjct: 121 ALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFT 180
Query: 658 GCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVK 837
GCSMNPARSFGPAVVMNRFSP+HWVFW LYFYLLFPNSLSLSERVA++K
Sbjct: 181 GCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLSLSERVAIIK 240
Query: 838 GTYXXXXXXXXXXXXRKKTMELT 906
GTY RKKTMELT
Sbjct: 241 GTYEPDEDWEEQREERKKTMELT 263
>ref|NP_000477.1| aquaporin-2 [Homo sapiens].
Length = 271
Score = 272 bits (696), Expect = 3e-73
Identities = 141/238 (59%), Positives = 169/238 (71%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S+AF +AVFAEFLATL+FVFFGL SAL WP ALP++LQIA+AFGL IGTL QALG +
Sbjct: 3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWPQALPSVLQIAMAFGLGIGTLVQALGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG HINPA+T+A LVG +S+LRA FY + RG+LAVN+L+
Sbjct: 63 SGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVNALS 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
N+TT GQAV VE+ LT QL LCIF+STD RR G+PALSIG SV LGHL+GI++TGCS
Sbjct: 123 NSTTAGQAVTVELFLTLQLVLCIFASTDERRGENPGTPALSIGFSVALGHLLGIHYTGCS 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARS PAVV +F HWVFW LY Y+LFP + SLSER+AV+KG
Sbjct: 183 MNPARSLAPAVVTGKFD-DHWVFWIGPLVGAILGSLLYNYVLFPPAKSLSERLAVLKG 239
>ref|NP_001643.2| aquaporin-6 [Homo sapiens].
Length = 282
Score = 226 bits (576), Expect = 3e-59
Identities = 113/234 (48%), Positives = 155/234 (66%)
Frame = +1
Query: 142 AFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHI 321
A +A+FAEFLAT ++VFFG+ S ++WP+ALP++LQIA+ F L Q SG H
Sbjct: 22 AISRALFAEFLATGLYVFFGVGSVMRWPTALPSVLQIAITFNLVTAMAVQVTWKASGAHA 81
Query: 322 NPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLNNNTTP 501
NPA+TLA LVG+ ISL RAV Y + R L +N + N+ +
Sbjct: 82 NPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETLGINVVRNSVST 141
Query: 502 GQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPAR 681
GQAV VE++LT QL LC+F+STDSR+TS GSPA IG+SV LGHL+GI+FTGCSMNPAR
Sbjct: 142 GQAVAVELLLTLQLVLCVFASTDSRQTS--GSPATMIGISVALGHLIGIHFTGCSMNPAR 199
Query: 682 SFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKGT 843
SFGPA+++ +F+ HWVFW +Y ++LFP++ +L++R+A++ GT
Sbjct: 200 SFGPAIIIGKFT-VHWVFWVGPLMGALLASLIYNFVLFPDTKTLAQRLAILTGT 252
>ref|NP_036196.1| lens fiber major intrinsic protein [Homo sapiens].
Length = 263
Score = 223 bits (567), Expect = 3e-58
Identities = 112/238 (47%), Positives = 153/238 (64%)
Frame = +1
Query: 127 EVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPTILQIALAFGLAIGTLAQALGPV 306
E+ S +F +A+FAEF ATL +VFFGL S+L+W +LQ+A+AFGLA+ TL Q++G +
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHI 62
Query: 307 SGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLAVNSLN 486
SG H+NPA+T A LVG+Q+SLLRA Y RGNLA+N+L+
Sbjct: 63 SGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLH 122
Query: 487 NNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCS 666
+ GQA VE+ LT Q LCIF++ D RR +GS AL++G S+ LGHL G+Y+TG
Sbjct: 123 PAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSVALAVGFSLALGHLFGMYYTGAG 182
Query: 667 MNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAVVKG 840
MNPARSF PA++ F+ +HWV+W LY +LLFP S+SER++V+KG
Sbjct: 183 MNPARSFAPAILTGNFT-NHWVYWVGPIIGGGLGSLLYDFLLFPRLKSISERLSVLKG 239
>ref|NP_004019.1| aquaporin-4 isoform b [Homo sapiens].
Length = 301
Score = 181 bits (458), Expect = 1e-45
Identities = 99/230 (43%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Frame = +1
Query: 124 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---LPT-ILQIALAFGLAIGTLAQ 291
K V + AF KAV AEFLA LIFV L S + W LP ++ I+L FGL+I T+ Q
Sbjct: 5 KGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQ 64
Query: 292 ALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLA 471
G +SGGHINPA+T+A++ +IS+ ++VFY + G L
Sbjct: 65 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLG 124
Query: 472 VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIY 651
V ++ N T G ++VE+I+TFQL IF+S DS+RT GS AL+IG SV +GHL I
Sbjct: 125 VTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN 184
Query: 652 FTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPN 801
+TG SMNPARSFGPAV+M + +HW++W LY Y+ P+
Sbjct: 185 YTGASMNPARSFGPAVIMGNWE-NHWIYWVGPIIGAVLAGGLYEYVFCPD 233
>ref|NP_001641.1| aquaporin-4 isoform a [Homo sapiens].
Length = 323
Score = 181 bits (458), Expect = 1e-45
Identities = 99/230 (43%), Positives = 134/230 (58%), Gaps = 4/230 (1%)
Frame = +1
Query: 124 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSA---LPT-ILQIALAFGLAIGTLAQ 291
K V + AF KAV AEFLA LIFV L S + W LP ++ I+L FGL+I T+ Q
Sbjct: 27 KGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQ 86
Query: 292 ALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNARGNLA 471
G +SGGHINPA+T+A++ +IS+ ++VFY + G L
Sbjct: 87 CFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLG 146
Query: 472 VNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIY 651
V ++ N T G ++VE+I+TFQL IF+S DS+RT GS AL+IG SV +GHL I
Sbjct: 147 VTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAIN 206
Query: 652 FTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPN 801
+TG SMNPARSFGPAV+M + +HW++W LY Y+ P+
Sbjct: 207 YTGASMNPARSFGPAVIMGNWE-NHWIYWVGPIIGAVLAGGLYEYVFCPD 255
>ref|NP_932766.1| aquaporin-1 isoform 1 [Homo sapiens].
Length = 269
Score = 179 bits (454), Expect = 4e-45
Identities = 102/245 (41%), Positives = 142/245 (57%), Gaps = 7/245 (2%)
Frame = +1
Query: 118 MKKEVCSLAFLKAVFAEFLATLIFVFFGLASAL--KWP-----SALPTILQIALAFGLAI 276
M E F +AV AEFLAT +FVF + SAL K+P +A+ ++++LAFGL+I
Sbjct: 1 MASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSI 60
Query: 277 GTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYXXXXXXXXXXXXXXXXXXXXXNA 456
TLAQ++G +SG H+NPA+TL LL+ QIS+ RA+ Y
Sbjct: 61 ATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLT 120
Query: 457 RGNLAVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGH 636
+L N L + GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV LGH
Sbjct: 121 GNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGH 180
Query: 637 LVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLS 816
L+ I +TGC +NPARSFG AV+ + FS +HW+FW +Y ++L P S L+
Sbjct: 181 LLAIDYTGCGINPARSFGSAVITHNFS-NHWIFWVGPFIGGALAVLIYDFILAPRSSDLT 239
Query: 817 ERVAV 831
+RV V
Sbjct: 240 DRVKV 244
>ref|NP_001171991.1| aquaporin-1 isoform 4 [Homo sapiens].
Length = 154
Score = 105 bits (263), Expect = 5e-23
Identities = 53/117 (45%), Positives = 73/117 (62%)
Frame = +1
Query: 481 LNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTG 660
L + GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV LGHL+ I +TG
Sbjct: 14 LADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTG 73
Query: 661 CSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAV 831
C +NPARSFG AV+ + FS +HW+FW +Y ++L P S L++RV V
Sbjct: 74 CGINPARSFGSAVITHNFS-NHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKV 129
>ref|NP_001171990.1| aquaporin-1 isoform 3 [Homo sapiens].
Length = 218
Score = 105 bits (263), Expect = 5e-23
Identities = 53/117 (45%), Positives = 73/117 (62%)
Frame = +1
Query: 481 LNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTG 660
L + GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV LGHL+ I +TG
Sbjct: 78 LADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTG 137
Query: 661 CSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAV 831
C +NPARSFG AV+ + FS +HW+FW +Y ++L P S L++RV V
Sbjct: 138 CGINPARSFGSAVITHNFS-NHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKV 193
>ref|NP_001171989.1| aquaporin-1 isoform 2 [Homo sapiens].
Length = 186
Score = 105 bits (263), Expect = 5e-23
Identities = 53/117 (45%), Positives = 73/117 (62%)
Frame = +1
Query: 481 LNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTG 660
L + GQ + +E+I T QL LC+ ++TD RR GS L+IGLSV LGHL+ I +TG
Sbjct: 46 LADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTG 105
Query: 661 CSMNPARSFGPAVVMNRFSPSHWVFWXXXXXXXXXXXXLYFYLLFPNSLSLSERVAV 831
C +NPARSFG AV+ + FS +HW+FW +Y ++L P S L++RV V
Sbjct: 106 CGINPARSFGSAVITHNFS-NHWIFWVGPFIGGALAVLIYDFILAPRSSDLTDRVKV 161
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,949,522
Number of extensions: 1119703
Number of successful extensions: 6161
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6067
Number of HSP's successfully gapped: 12
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014280
(1042 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 902 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 902 bits (455), Expect = 0.0
Identities = 469/476 (98%)
Strand = Plus / Minus
Query: 5 gccgcgtcgtgggcgtcggagagcacgccgcaccggggagccagccccctgcgcccagcg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082967 gccgcgtcgtgggcgtcggagagcacgccgcaccggggagccagccccctgcgcccagcg 16082908
Query: 65 ccgccgnnnnnnngacgggcgtctcccgcagccgcggtccctgccgcgcgaccatgaaga 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082907 ccgccgcccccccgacgggcgtctcccgcagccgcggtccctgccgcgcgaccatgaaga 16082848
Query: 125 aggaggtgtgctctctggccttcctcaaggccgtgttcgccgagttcctggccaccctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082847 aggaggtgtgctctctggccttcctcaaggccgtgttcgccgagttcctggccaccctca 16082788
Query: 185 tcttcgtcttcttcggcctcgcctcggccctcaagtggccctcggcgctgcccaccatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082787 tcttcgtcttcttcggcctcgcctcggccctcaagtggccctcggcgctgcccaccatcc 16082728
Query: 245 tgcagatcgcgctagccttcggcctggccattggcaccctggcccaggccctggggccgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082727 tgcagatcgcgctagccttcggcctggccattggcaccctggcccaggccctggggccgg 16082668
Query: 305 tgagcggtggccacatcaaccctgccatcacgctggccctcctagtgggcaaccagatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082667 tgagcggtggccacatcaaccctgccatcacgctggccctcctagtgggcaaccagatct 16082608
Query: 365 ccctgctccgggctgtcttctacgtggtggcccagctggtgggcgccattgccggagcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082607 ccctgctccgggctgtcttctacgtggtggcccagctggtgggcgccattgccggagcag 16082548
Query: 425 gcatcctgtatgggctggcacctggcaatgcccggggcaatctggccgtcaactcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16082547 gcatcctgtatgggctggcacctggcaatgcccggggcaatctggccgtcaactcg 16082492
Score = 565 bits (285), Expect = e-158
Identities = 298/301 (99%), Gaps = 1/301 (0%)
Strand = Plus / Minus
Query: 729 ggtcttctgggtggggcccatcgtgggggccgccgtggctgccatcctctacttctacct 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16080038 ggtcttctgggtggggcccatcgtgggggccgccgtggctgccatcctctacttctacct 16079979
Query: 789 gctcttccccaactccctgagcctcagcgagcgagtggccgtcgtgaagggcacctatga 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16079978 gctcttccccaactccctgagcctcagcgagcgagtggccgtcgtgaagggcacctatga 16079919
Query: 849 gtccgaggaggattgggaggagcagcgggaggagcggaagaagaccatggagctgacggc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16079918 gtccgaggaggattgggaggagcagcgggaggagcggaagaagaccatggagctgacggc 16079859
Query: 909 ccactgaccagcatcccccggggggcagcctctcagcccctgaaccgcagggggaagaag 968
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16079858 ccactgaccagcatcccccgggggccagcctctcagcccctgaaccgcagggggaagaag 16079799
Query: 969 gaaaacagatgacagcgaagcctcctttcccaacggct-ggtcctctgggctggggagga 1027
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 16079798 gaaaacagatgacagcgaagcctccttccccaacggctgggtcctctgggctggggagga 16079739
Query: 1028 g 1028
|
Sbjct: 16079738 g 16079738
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 480 gctcaacaacaacacgactccgggccaggccgtggtggtggaaatgattctgaccttcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16081395 gctcaacaacaacacgactccgggccaggccgtggtggtggaaatgattctgaccttcca 16081336
Query: 540 gctggcgctctgcatcttctcttccactgactcccgccgcaccagtcctgtgggctcccc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16081335 gctggcgctctgcatcttctcttccactgactcccgccgcaccagtcctgtgggctcccc 16081276
Query: 600 agccctgtccattggcctgtctgtcacactgggccaccttgtgggg 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16081275 agccctgtccattggcctgtctgtcacactgggccaccttgtgggg 16081230
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 645 gatctacttcaccggctgctccatgaacccagcccgctctttcggccccgcagtcgtcat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16080908 gatctacttcaccggctgctccatgaacccagcccgctctttcggccccgcagtcgtcat 16080849
Query: 705 gaatcgattcagcccctcgcactgggt 731
|||||||||||||||||||||||||||
Sbjct: 16080848 gaatcgattcagcccctcgcactgggt 16080822
Score = 85.7 bits (43), Expect = 4e-14
Identities = 199/251 (79%)
Strand = Plus / Minus
Query: 157 gtgttcgccgagttcctggccaccctcatcttcgtcttcttcggcctcgcctcggccctc 216
||||| || |||||||||||||| ||| |||| |||||||||||||||| ||||||||||
Sbjct: 16095864 gtgtttgcagagttcctggccacactcctctttgtcttcttcggcctcggctcggccctc 16095805
Query: 217 aagtggccctcggcgctgcccaccatcctgcagatcgcgctagccttcggcctggccatt 276
|| ||||| ||| |||| | | |||||||| || | |||||||||||||| ||
Sbjct: 16095804 aactggccacaggccttgccttctgtgctgcagattgccatggccttcggcctggcgatc 16095745
Query: 277 ggcaccctggcccaggccctggggccggtgagcggtggccacatcaaccctgccatcacg 336
|||||||||| ||||| ||||| | | ||||| | |||||||||||||||| | ||
Sbjct: 16095744 ggcaccctggtgcaggctctgggccacatcagcggggcccacatcaaccctgccgtgact 16095685
Query: 337 ctggccctcctagtgggcaaccagatctccctgctccgggctgtcttctacgtggtggcc 396
| ||| ||| |||||| ||| ||||| | ||||| |||| ||||||||||| |||
Sbjct: 16095684 gtagcctgcctggtgggctgccatgtctcctttctccgagctgccttctacgtggctgcc 16095625
Query: 397 cagctggtggg 407
|||||| ||||
Sbjct: 16095624 cagctgctggg 16095614
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 645 gatctacttcaccggctgctccatgaacccagcccgctc 683
|||||||||||||||||||||||||||||||||||||||
Sbjct: 16069337 gatctacttcaccggctgctccatgaacccagcccgctc 16069299
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,745,206
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 6
Length of query: 1042
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1021
Effective length of database: 2,808,413,156
Effective search space: 2867389832276
Effective search space used: 2867389832276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)