Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_549087.1| PREDICTED: similar to ATP-binding cassette, sub... 457 e-129
Alignment gi|XP_536073.2| PREDICTED: similar to ATP-binding cassette, sub... 86 6e-17
>ref|XP_549087.1| PREDICTED: similar to ATP-binding cassette, sub-family B, member 7,
mitochondrial precursor (ATP-binding cassette
transporter 7) (ABC transporter 7 protein) [Canis
familiaris].
Length = 752
Score = 457 bits (1176), Expect = e-129
Identities = 237/274 (86%), Positives = 242/274 (88%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQISES 200
MALLAI S RW EKRR V LIRP + G G Q RS QL SGTAR SQI ES
Sbjct: 1 MALLAIRSSRWVAAAASLEKRRLVVFLIRPLGFVRGAGTQWRSRQLRASGTARISQIPES 60
Query: 201 LRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 380
LR+TTWQRLGKGNSRQ+LD TRA+Q PL EKRTCWHGHAGGGLHTDPKEGLKDVDTRKI
Sbjct: 61 LRYTTWQRLGKGNSRQILDVTRALQGRPLPEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 120
Query: 381 IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 560
IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD
Sbjct: 121 IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 180
Query: 561 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLAF 740
APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIA+NVFLHLHNLDLAF
Sbjct: 181 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIARNVFLHLHNLDLAF 240
Query: 741 HLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
HLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 HLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 274
>ref|XP_536073.2| PREDICTED: similar to ATP-binding cassette, sub-family B, member 6,
mitochondrial precursor (Mitochondrial ABC transporter
3) (Mt-ABC transporter 3) (ABC transporter umat) [Canis
familiaris].
Length = 1099
Score = 85.5 bits (210), Expect = 6e-17
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Frame = +3
Query: 366 DTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNM 545
D + ++ + Y+WP+ P L+ V I LG +G + +N++VP ++ V+SL +
Sbjct: 500 DLGRKLRLLSGYLWPRGSPVLQLVVLICLGLMGLERGLNVLVPIFYRNIVNSLTEK---- 555
Query: 546 LNLSDAP-NTVATMAT---AVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFL 713
AP N++A + T A+ G F + +R ++ +V Q + R++ +F
Sbjct: 556 -----APWNSLAWIVTTYVALKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRQVELRLFS 610
Query: 714 HLHNLDLAFHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLP 839
HLH L L +HL R+TG ++ +DRGT ++ +LS LVF +P
Sbjct: 611 HLHELSLRWHLGRRTGEVLRIVDRGTSSVTGLLSYLVFNIIP 652
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,045,392
Number of extensions: 967406
Number of successful extensions: 2281
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2280
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 180
Effective length of database: 15,507,568
Effective search space: 2791362240
Effective search space used: 2791362240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014285
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179712.1| ATP-binding cassette sub-family B member 7, ... 481 e-136
Alignment gi|XP_002700035.1| PREDICTED: ATP-binding cassette, sub-family ... 481 e-136
Alignment gi|NP_001091625.1| ATP-binding cassette sub-family B member 6, ... 82 6e-16
Alignment gi|XP_002700036.1| PREDICTED: hypothetical protein [Bos taurus]. 73 3e-13
Alignment gi|XP_001251513.1| PREDICTED: hypothetical protein [Bos taurus]. 73 3e-13
>ref|NP_001179712.1| ATP-binding cassette sub-family B member 7, mitochondrial [Bos
taurus].
Length = 753
Score = 481 bits (1239), Expect = e-136
Identities = 246/275 (89%), Positives = 250/275 (90%), Gaps = 1/275 (0%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQ-ISE 197
MALLAIHSWRW FEKRRH VILIRP VS GPG Q RS QL SGTA SQ + E
Sbjct: 1 MALLAIHSWRWAAAAVAFEKRRHAVILIRPLVSFRGPGPQWRSHQLRSSGTAGISQKVPE 60
Query: 198 SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 377
LRHTTW+RLGK NSR+LLDATRA+QAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK
Sbjct: 61 LLRHTTWRRLGKDNSRELLDATRALQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 120
Query: 378 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 557
IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS
Sbjct: 121 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 180
Query: 558 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 737
DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA
Sbjct: 181 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 240
Query: 738 FHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
FHLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 FHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 275
>ref|XP_002700035.1| PREDICTED: ATP-binding cassette, sub-family B (MDR/TAP), member 7
[Bos taurus].
Length = 753
Score = 481 bits (1239), Expect = e-136
Identities = 246/275 (89%), Positives = 250/275 (90%), Gaps = 1/275 (0%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQ-ISE 197
MALLAIHSWRW FEKRRH VILIRP VS GPG Q RS QL SGTA SQ + E
Sbjct: 1 MALLAIHSWRWAAAAVAFEKRRHAVILIRPLVSFRGPGPQWRSHQLRSSGTAGISQKVPE 60
Query: 198 SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 377
LRHTTW+RLGK NSR+LLDATRA+QAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK
Sbjct: 61 LLRHTTWRRLGKDNSRELLDATRALQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 120
Query: 378 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 557
IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS
Sbjct: 121 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 180
Query: 558 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 737
DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA
Sbjct: 181 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 240
Query: 738 FHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
FHLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 FHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 275
>ref|NP_001091625.1| ATP-binding cassette sub-family B member 6, mitochondrial [Bos
taurus].
Length = 843
Score = 82.0 bits (201), Expect = 6e-16
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Frame = +3
Query: 366 DTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNM 545
D + ++ + Y+WP+ P L+ V I LG +G + +N++VP ++ V+ L Q
Sbjct: 243 DLGRKLRLLSGYLWPRGSPALQFVVLICLGLMGLERGLNVLVPIFYRDIVNLLTQK---- 298
Query: 546 LNLSDAP--NTVATMATAVLIGY--GVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFL 713
AP + V T+ V + + G F +R ++ +V Q + R++ +F
Sbjct: 299 -----APWNSLVWTVIIYVFLKFLQGGGTGSTGFVTNLRTFLWIRVQQFTSRQVELRLFS 353
Query: 714 HLHNLDLAFHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLP 839
HLH L L +HL R+TG ++ +DRGT ++ +LS LVF +P
Sbjct: 354 HLHELSLRWHLGRRTGEVLRIVDRGTSSVTGLLSYLVFNIIP 395
>ref|XP_002700036.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 98
Score = 73.2 bits (178), Expect = 3e-13
Identities = 40/55 (72%), Positives = 42/55 (76%)
Frame = -2
Query: 183 RSAQFPSRRADLTYTEHLGRR*RQKAGSESHRAGAFRKQPPQLPSARNVSRAAPS 19
R QFPS AD+T T LG R +A SES RAGAFRKQPPQLPSARNVSRAAPS
Sbjct: 44 RFQQFPSCGADVTSTADLGPGKRLEAESESRRAGAFRKQPPQLPSARNVSRAAPS 98
>ref|XP_001251513.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 98
Score = 73.2 bits (178), Expect = 3e-13
Identities = 40/55 (72%), Positives = 42/55 (76%)
Frame = -2
Query: 183 RSAQFPSRRADLTYTEHLGRR*RQKAGSESHRAGAFRKQPPQLPSARNVSRAAPS 19
R QFPS AD+T T LG R +A SES RAGAFRKQPPQLPSARNVSRAAPS
Sbjct: 44 RFQQFPSCGADVTSTADLGPGKRLEAESESRRAGAFRKQPPQLPSARNVSRAAPS 98
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,577,444
Number of extensions: 942211
Number of successful extensions: 2273
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2268
Number of HSP's successfully gapped: 5
Length of query: 281
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 180
Effective length of database: 14,339,486
Effective search space: 2581107480
Effective search space used: 2581107480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928754.2| PREDICTED: ATP-binding cassette sub-family B... 525 e-149
Alignment gi|XP_003360419.1| PREDICTED: ATP-binding cassette sub-family B... 520 e-148
Alignment gi|XP_001928166.2| PREDICTED: ATP-binding cassette sub-family B... 86 3e-17
>ref|XP_001928754.2| PREDICTED: ATP-binding cassette sub-family B member 7,
mitochondrial isoform 1 [Sus scrofa].
Length = 752
Score = 525 bits (1352), Expect = e-149
Identities = 264/274 (96%), Positives = 264/274 (96%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQISES 200
MALLAIHSWRW FEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQISES
Sbjct: 1 MALLAIHSWRWAAAAAAFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQISES 60
Query: 201 LRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 380
LRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI
Sbjct: 61 LRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 120
Query: 381 IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 560
IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD
Sbjct: 121 IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 180
Query: 561 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLAF 740
APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLAF
Sbjct: 181 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLAF 240
Query: 741 HLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
HLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 HLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 274
>ref|XP_003360419.1| PREDICTED: ATP-binding cassette sub-family B member 7,
mitochondrial isoform 2 [Sus scrofa].
Length = 753
Score = 520 bits (1340), Expect = e-148
Identities = 264/275 (96%), Positives = 264/275 (96%), Gaps = 1/275 (0%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQ-ISE 197
MALLAIHSWRW FEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQ ISE
Sbjct: 1 MALLAIHSWRWAAAAAAFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQQISE 60
Query: 198 SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 377
SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK
Sbjct: 61 SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 120
Query: 378 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 557
IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS
Sbjct: 121 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 180
Query: 558 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 737
DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA
Sbjct: 181 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 240
Query: 738 FHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
FHLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 FHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 275
>ref|XP_001928166.2| PREDICTED: ATP-binding cassette sub-family B member 6,
mitochondrial [Sus scrofa].
Length = 862
Score = 85.5 bits (210), Expect = 3e-17
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = +3
Query: 366 DTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNM 545
D + ++ + Y+WP+ P L+ V + LG +G + +N++VP ++ V+ L Q
Sbjct: 261 DLGRKLRLLSGYLWPRGSPALQLVVLLCLGLMGLDRGLNVLVPIYYRDIVNLLTQ----- 315
Query: 546 LNLSDAP--NTVATMATAVLIGY--GVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFL 713
+AP + T+ T V + + G F + +R ++ +V Q + RR+ +F
Sbjct: 316 ----NAPWSSLAWTVTTYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELRLFS 371
Query: 714 HLHNLDLAFHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLP 839
HLH L L +HL R+TG ++ +DRGT ++ +LS LVF LP
Sbjct: 372 HLHELSLRWHLGRRTGEVLRIVDRGTSSVTGLLSYLVFNILP 413
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,267,107
Number of extensions: 604053
Number of successful extensions: 1461
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 183
Effective length of database: 8,904,026
Effective search space: 1629436758
Effective search space used: 1629436758
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033722.1| ATP-binding cassette sub-family B member 7, mit... 461 e-130
Alignment gi|NP_076221.1| ATP-binding cassette sub-family B member 6, mit... 87 1e-17
>ref|NP_033722.1| ATP-binding cassette sub-family B member 7, mitochondrial [Mus
musculus].
Length = 752
Score = 461 bits (1187), Expect = e-130
Identities = 234/274 (85%), Positives = 244/274 (89%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTARTSQISES 200
MALLAIHSWRW FEK +H +L R VS+ G G + SSQ G SG+AR SQ +ES
Sbjct: 1 MALLAIHSWRWAAAAVAFEKHKHSAVLTRALVSMCGSGPRWSSSQRGASGSARLSQTTES 60
Query: 201 LRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 380
LR+TT QR GK NSRQLLDAT+A+Q WPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI
Sbjct: 61 LRNTTQQRWGKDNSRQLLDATKALQTWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRKI 120
Query: 381 IKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 560
IKAMLSYVWP+DRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD
Sbjct: 121 IKAMLSYVWPEDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLSD 180
Query: 561 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLAF 740
APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDL F
Sbjct: 181 APNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLGF 240
Query: 741 HLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
HLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 HLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 274
>ref|NP_076221.1| ATP-binding cassette sub-family B member 6, mitochondrial [Mus
musculus].
Length = 842
Score = 87.4 bits (215), Expect = 1e-17
Identities = 53/174 (30%), Positives = 94/174 (54%), Gaps = 3/174 (1%)
Frame = +3
Query: 327 GLHTDPKEGLKDVDTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFK 506
G TD + +D+ + ++ + SY+WP+ P L+ V I LG +G +A+N++VP ++
Sbjct: 230 GRSTDRRSTWRDLGRK--LRLLSSYLWPRGSPSLQLIVLICLGLMGLERALNVLVPIFYR 287
Query: 507 YAVDSLNQMSGNMLNLSDAPNTVA-TMATAVLIGY--GVSRAGAAFFNEVRNAVFGKVAQ 677
V N+L +++A T+ T V + + G F + +R ++ +V Q
Sbjct: 288 DIV--------NLLTAKAPWSSLAWTVTTYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQ 339
Query: 678 NSIRRIAKNVFLHLHNLDLAFHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLP 839
+ R + +F HLH L L +HL R+TG ++ +DRGT ++ +LS LVF +P
Sbjct: 340 FTSRGVELRLFSHLHELSLRWHLGRRTGEVLRIVDRGTSSVTGLLSYLVFSIIP 393
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,151,305
Number of extensions: 819361
Number of successful extensions: 1995
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1991
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 181
Effective length of database: 12,613,959
Effective search space: 2283126579
Effective search space used: 2283126579
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004290.2| ATP-binding cassette sub-family B member 7, mit... 469 e-132
Alignment gi|NP_005680.1| ATP-binding cassette sub-family B member 6, mit... 84 1e-16
>ref|NP_004290.2| ATP-binding cassette sub-family B member 7, mitochondrial [Homo
sapiens].
Length = 753
Score = 469 bits (1206), Expect = e-132
Identities = 238/275 (86%), Positives = 243/275 (88%), Gaps = 1/275 (0%)
Frame = +3
Query: 21 MALLAIHSWRWXXXXXXFEKRRHGVILIRPFVSIGGPGAQCRSSQLGGSGTART-SQISE 197
MALLA+HSWRW FEKRRH ILIRP VS+ G G Q R QLG GTAR QI E
Sbjct: 1 MALLAMHSWRWAAAAAAFEKRRHSAILIRPLVSVSGSGPQWRPHQLGALGTARAYQQIPE 60
Query: 198 SLRHTTWQRLGKGNSRQLLDATRAVQAWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 377
SL+ TWQRLGKGNS Q LDA +A+Q WPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK
Sbjct: 61 SLKSITWQRLGKGNSGQFLDAAKALQVWPLIEKRTCWHGHAGGGLHTDPKEGLKDVDTRK 120
Query: 378 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 557
IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS
Sbjct: 121 IIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNMLNLS 180
Query: 558 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLA 737
DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDL
Sbjct: 181 DAPNTVATMATAVLIGYGVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFLHLHNLDLG 240
Query: 738 FHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLPI 842
FHLSRQTGA KAIDRGTRGISFVLSALVF LPI
Sbjct: 241 FHLSRQTGALSKAIDRGTRGISFVLSALVFNLLPI 275
>ref|NP_005680.1| ATP-binding cassette sub-family B member 6, mitochondrial [Homo
sapiens].
Length = 842
Score = 84.3 bits (207), Expect = 1e-16
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 4/162 (2%)
Frame = +3
Query: 366 DTRKIIKAMLSYVWPKDRPDLRARVAISLGFLGGAKAMNIVVPFMFKYAVDSLNQMSGNM 545
D + ++ + Y+WP+ P L+ V I LG +G +A+N++VP ++ V+ L +
Sbjct: 241 DFGRKLRLLSGYLWPRGSPALQLVVLICLGLMGLERALNVLVPIFYRNIVNLLTEK---- 296
Query: 546 LNLSDAP-NTVA-TMATAVLIGY--GVSRAGAAFFNEVRNAVFGKVAQNSIRRIAKNVFL 713
AP N++A T+ + V + + G F + +R ++ +V Q + RR+ +F
Sbjct: 297 -----APWNSLAWTVTSYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELLIFS 351
Query: 714 HLHNLDLAFHLSRQTGAFIKAIDRGTRGISFVLSALVFYPLP 839
HLH L L +HL R+TG ++ DRGT ++ +LS LVF +P
Sbjct: 352 HLHELSLRWHLGRRTGEVLRIADRGTSSVTGLLSYLVFNVIP 393
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,419,882
Number of extensions: 958907
Number of successful extensions: 2265
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2263
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 180
Effective length of database: 14,967,800
Effective search space: 2694204000
Effective search space used: 2694204000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014285
(844 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 426 e-117
>Sscrofa_ChrX
|| Length = 144288218
Score = 426 bits (215), Expect = e-117
Identities = 235/239 (98%), Gaps = 2/239 (0%)
Strand = Plus / Minus
Query: 607 atggtgtgtcaagagccggagctgccttttttaatgaagttcgaaatgcagtatttggca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68418741 atggtgtgtcaagagccggagctgccttttttaatgaagttcgaaatgcagtatttggca 68418682
Query: 667 aggtagcccaaaattcaatccgaaggatagccaaaaatgtctttctccatcttcacaacc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68418681 aggtagcccaaaattcaatccgaaggatagccaaaaatgtctttctccatcttcacaacc 68418622
Query: 727 tggatctggctttccacctgagcagacaaacaggagcttttatc-aaggctattgacaga 785
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 68418621 tggatctggctttccacctgagcagacaaacaggagc-tttatcaaaggctattgacaga 68418563
Query: 786 gggacaaggggtatcagttttgtcctgagtgccttagtattttatcctcttcccatcat 844
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 68418562 gggacaaggggtatcagttttgtcctgagtgccttagtatttaatcttcttcccatcat 68418504
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 1 ttcctctttcctcgctcaagatggcgctgctcgcgatacattcctggcgctgggcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68522004 ttcctctttcctcgctcaagatggcgctgctcgcgatacattcctggcgctgggcagctg 68521945
Query: 61 cggcggctgctttcgaaaagcgccggcacggtgtgattctgatccggccttttgtctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68521944 cggcggctgctttcgaaaagcgccggcacggtgtgattctgatccggccttttgtctcta 68521885
Query: 121 tcggcggcccaggtgctcagtgtaggtcaagtcagctcggcggctcgggaactgcgcgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68521884 tcggcggcccaggtgctcagtgtaggtcaagtcagctcggcggctcgggaactgcgcgga 68521825
Query: 181 cctcccag 188
||||||||
Sbjct: 68521824 cctcccag 68521817
Score = 268 bits (135), Expect = 5e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 472 aggccatgaatattgtggttcccttcatgtttaaatacgctgtagacagcctcaaccaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68420292 aggccatgaatattgtggttcccttcatgtttaaatacgctgtagacagcctcaaccaga 68420233
Query: 532 tgtcgggaaacatgctgaacctgagtgatgcaccaaatacagttgcaaccatggcaacgg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68420232 tgtcgggaaacatgctgaacctgagtgatgcaccaaatacagttgcaaccatggcaacgg 68420173
Query: 592 cagttctgattggct 606
|||||||||||||||
Sbjct: 68420172 cagttctgattggct 68420158
Score = 234 bits (118), Expect = 6e-59
Identities = 121/122 (99%)
Strand = Plus / Minus
Query: 353 gttaaaagacgttgatactcggaaaatcataaaagcaatgctctcttatgtatggcccaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68449494 gttaaaagacgttgatactcggaaaatcataaaagcaatgctctcttatgtatggcccaa 68449435
Query: 413 agacaggccagatctgcgagctagggttgccatttccttgggatttttgggtggagcaaa 472
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68449434 agacaggccggatctgcgagctagggttgccatttccttgggatttttgggtggagcaaa 68449375
Query: 473 gg 474
||
Sbjct: 68449374 gg 68449373
Score = 174 bits (88), Expect = 5e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 266 ggctgtccaggcatggccactgatagaaaagaggacatgttggcatggtcatgcaggagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68463349 ggctgtccaggcatggccactgatagaaaagaggacatgttggcatggtcatgcaggagg 68463290
Query: 326 aggactccacacagacccgaaggaaggg 353
||||||||||||||||||||||||||||
Sbjct: 68463289 aggactccacacagacccgaaggaaggg 68463262
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 186 cagatctcagagtcattgagacataccacatggcagagactaggaaaaggcaattcaaga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68466079 cagatctcagagtcattgagacataccacatggcagagactaggaaaaggcaattcaaga 68466020
Query: 246 cagttattagatgctacaaggg 267
||||||||||||||||||||||
Sbjct: 68466019 cagttattagatgctacaaggg 68465998
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,784,072
Number of extensions: 104
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 6
Length of query: 844
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 823
Effective length of database: 2,808,413,156
Effective search space: 2311324027388
Effective search space used: 2311324027388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)