Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192908.1| probable palmitoyltransferase ZDHHC24 [Bos t... 342 4e-94
Alignment gi|XP_002699404.1| PREDICTED: DHHC-types zinc finger transcript... 342 4e-94
Alignment gi|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing... 64 2e-10
Alignment gi|NP_001069856.1| probable palmitoyltransferase ZDHHC20 [Bos t... 63 3e-10
Alignment gi|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus]. 62 5e-10
Alignment gi|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos t... 61 2e-09
Alignment gi|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14... 61 2e-09
Alignment gi|XP_002698727.1| PREDICTED: zinc finger, DHHC domain containi... 59 6e-09
Alignment gi|XP_616436.3| PREDICTED: zinc finger, DHHC domain containing ... 59 6e-09
Alignment gi|XP_002700034.1| PREDICTED: zinc finger, DHHC-type containing... 57 3e-08
>ref|NP_001192908.1| probable palmitoyltransferase ZDHHC24 [Bos taurus].
Length = 284
Score = 342 bits (876), Expect = 4e-94
Identities = 173/269 (64%), Positives = 177/269 (65%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MGQPWAVG+AE + ARLPLVLTALWAAAVGLE+AYVLV
Sbjct: 1 MGQPWAVGTAEASPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARTLQVALAAF 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61 QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
DHHCRLLGRCVGF NYRPF PALS
Sbjct: 121 DHHCRLLGRCVGFRNYRPFLCLLLHGAGVLLHASVLLGPALSALLRAHTPLHTAALLLLP 180
Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
TGRVSLAQFALAFVTDTCV FHGMLLLRGQTTWEWARGQH+YDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHAYDLG 240
Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269
>ref|XP_002699404.1| PREDICTED: DHHC-types zinc finger transcription factor family
member (dhhc-1)-like [Bos taurus].
Length = 284
Score = 342 bits (876), Expect = 4e-94
Identities = 173/269 (64%), Positives = 177/269 (65%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MGQPWAVG+AE + ARLPLVLTALWAAAVGLE+AYVLV
Sbjct: 1 MGQPWAVGTAEASPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARTLQVALAAF 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61 QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
DHHCRLLGRCVGF NYRPF PALS
Sbjct: 121 DHHCRLLGRCVGFRNYRPFLCLLLHGAGVLLHASVLLGPALSALLRAHTPLHTAALLLLP 180
Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
TGRVSLAQFALAFVTDTCV FHGMLLLRGQTTWEWARGQH+YDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHAYDLG 240
Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269
>ref|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing 18-like [Bos taurus].
Length = 430
Score = 63.9 bits (154), Expect = 2e-10
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P R VM+ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 189 RPPPRTREVMINGQVVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGK 246
Query: 518 HNYRPF 535
NYR F
Sbjct: 247 RNYRFF 252
>ref|NP_001069856.1| probable palmitoyltransferase ZDHHC20 [Bos taurus].
Length = 365
Score = 63.2 bits (152), Expect = 3e-10
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R+ HCSAC +CIL+ DHHC + CVGF NY+ F
Sbjct: 127 YCERCQLIKPDRAHHCSACDMCILKMDHHCPWVNNCVGFSNYKFF 171
>ref|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus].
Length = 363
Score = 62.4 bits (150), Expect = 5e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos taurus].
Length = 488
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204
Query: 518 HNYRPF 535
NYR F
Sbjct: 205 RNYRFF 210
>ref|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14 isoform 2 [Bos
taurus].
Length = 473
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204
Query: 518 HNYRPF 535
NYR F
Sbjct: 205 RNYRFF 210
>ref|XP_002698727.1| PREDICTED: zinc finger, DHHC domain containing 2-like [Bos taurus].
Length = 344
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R HCS C CIL+ DHHC + CVGF NY+ F
Sbjct: 105 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 149
>ref|XP_616436.3| PREDICTED: zinc finger, DHHC domain containing 2-like [Bos taurus].
Length = 344
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R HCS C CIL+ DHHC + CVGF NY+ F
Sbjct: 105 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 149
>ref|XP_002700034.1| PREDICTED: zinc finger, DHHC-type containing 15-like isoform 2 [Bos
taurus].
Length = 328
Score = 56.6 bits (135), Expect = 3e-08
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
+C +C P R HCS C +C+L+ DHHC + C+GF NY+ F
Sbjct: 121 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 165
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,300,555
Number of extensions: 1041591
Number of successful extensions: 6930
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6736
Number of HSP's successfully gapped: 29
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540829.2| PREDICTED: similar to zinc finger, DHHC domain ... 350 1e-96
Alignment gi|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain c... 64 2e-10
Alignment gi|XP_543171.2| PREDICTED: similar to DHHC-containing protein 2... 63 3e-10
Alignment gi|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain c... 62 6e-10
Alignment gi|XP_854971.1| PREDICTED: similar to NEW1 domain containing pr... 61 2e-09
>ref|XP_540829.2| PREDICTED: similar to zinc finger, DHHC domain containing 24 [Canis
familiaris].
Length = 284
Score = 350 bits (898), Expect = 1e-96
Identities = 177/269 (65%), Positives = 179/269 (66%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MGQPWAVGSAEGA ARLPLVLTALWAAAVGLE+AYVLV
Sbjct: 1 MGQPWAVGSAEGAPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARALQLVLAAF 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61 QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
DHHCRLLGRCVGFHNYRPF PALS
Sbjct: 121 DHHCRLLGRCVGFHNYRPFLCLLLHAAGVLLHISVLLGPALSALLRAHAPLHTAALLLLP 180
Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
TGRVSLAQFALAFVTDTCV FHGMLLLRGQTTWEWARGQHSYDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLG 240
Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269
>ref|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 18
[Canis familiaris].
Length = 293
Score = 63.9 bits (154), Expect = 2e-10
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P R VM+ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 71 RPPPRTREVMINGQMVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 128
Query: 518 HNYRPF 535
NYR F
Sbjct: 129 RNYRFF 134
>ref|XP_543171.2| PREDICTED: similar to DHHC-containing protein 20 [Canis
familiaris].
Length = 440
Score = 63.2 bits (152), Expect = 3e-10
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R+ HCSAC +CIL+ DHHC + CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDMCILKMDHHCPWVNNCVGFSNYKFF 171
>ref|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 2 [Canis familiaris].
Length = 364
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 7 [Canis familiaris].
Length = 361
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 137 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 181
>ref|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 6 [Canis familiaris].
Length = 381
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 1 [Canis familiaris].
Length = 335
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 5 [Canis familiaris].
Length = 311
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
(Zinc finger protein 379) isoform 4 [Canis familiaris].
Length = 365
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_854971.1| PREDICTED: similar to NEW1 domain containing protein isoform 1
[Canis familiaris].
Length = 420
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 79 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 136
Query: 518 HNYRPF 535
NYR F
Sbjct: 137 RNYRFF 142
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,506,634
Number of extensions: 1064486
Number of successful extensions: 6765
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 6610
Number of HSP's successfully gapped: 34
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122542.2| PREDICTED: probable palmitoyltransferase ZDH... 213 1e-55
Alignment gi|XP_003353807.1| PREDICTED: probable palmitoyltransferase ZDH... 149 2e-36
Alignment gi|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus... 64 1e-10
Alignment gi|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isofo... 62 3e-10
Alignment gi|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus ... 62 3e-10
Alignment gi|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDH... 61 1e-09
Alignment gi|XP_003134243.2| PREDICTED: palmitoyltransferase ZDHHC2-like ... 59 4e-09
Alignment gi|XP_003359362.1| PREDICTED: probable palmitoyltransferase ZDH... 55 4e-08
Alignment gi|XP_001928860.1| PREDICTED: probable palmitoyltransferase ZDH... 55 4e-08
Alignment gi|XP_001928850.1| PREDICTED: probable palmitoyltransferase ZDH... 55 4e-08
>ref|XP_003122542.2| PREDICTED: probable palmitoyltransferase ZDHHC24-like [Sus scrofa].
Length = 218
Score = 213 bits (542), Expect = 1e-55
Identities = 104/139 (74%), Positives = 104/139 (74%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLV
Sbjct: 1 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVLGPGPPPLGPLARTLQLALAAF 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61 QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPF 535
DHHCRLLGRCVGFHNYRPF
Sbjct: 121 DHHCRLLGRCVGFHNYRPF 139
>ref|XP_003353807.1| PREDICTED: probable palmitoyltransferase ZDHHC24-like [Sus scrofa].
Length = 108
Score = 149 bits (377), Expect = 2e-36
Identities = 69/81 (85%), Positives = 69/81 (85%)
Frame = +2
Query: 683 VSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA 862
VSLAQFALAFVTDTCV FHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA
Sbjct: 13 VSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA 72
Query: 863 LGPRWVLVWLWTFLASPLPGD 925
LGPRWVLVWLW FLASPLPGD
Sbjct: 73 LGPRWVLVWLWPFLASPLPGD 93
>ref|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus scrofa].
Length = 345
Score = 63.9 bits (154), Expect = 1e-10
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P R VM+ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 131 RPPPRTREVMINGQVVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 188
Query: 518 HNYRPF 535
NYR F
Sbjct: 189 RNYRFF 194
>ref|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isoform 2 [Sus scrofa].
Length = 364
Score = 62.4 bits (150), Expect = 3e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus scrofa].
Length = 364
Score = 62.4 bits (150), Expect = 3e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDHHC14-like [Sus scrofa].
Length = 410
Score = 60.8 bits (146), Expect = 1e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 69 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 126
Query: 518 HNYRPF 535
NYR F
Sbjct: 127 RNYRFF 132
>ref|XP_003134243.2| PREDICTED: palmitoyltransferase ZDHHC2-like [Sus scrofa].
Length = 457
Score = 58.9 bits (141), Expect = 4e-09
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R HCS C CIL+ DHHC + CVGF NY+ F
Sbjct: 218 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 262
>ref|XP_003359362.1| PREDICTED: probable palmitoyltransferase ZDHHC16 [Sus scrofa].
Length = 296
Score = 55.5 bits (132), Expect = 4e-08
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
C +C + P R+ HCS C C+L+ DHHC L CVG +N+R F
Sbjct: 92 CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 135
>ref|XP_001928860.1| PREDICTED: probable palmitoyltransferase ZDHHC16 isoform 2 [Sus
scrofa].
Length = 377
Score = 55.5 bits (132), Expect = 4e-08
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
C +C + P R+ HCS C C+L+ DHHC L CVG +N+R F
Sbjct: 157 CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 200
>ref|XP_001928850.1| PREDICTED: probable palmitoyltransferase ZDHHC16 isoform 1 [Sus
scrofa].
Length = 361
Score = 55.5 bits (132), Expect = 4e-08
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2
Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
C +C + P R+ HCS C C+L+ DHHC L CVG +N+R F
Sbjct: 157 CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 200
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,585,778
Number of extensions: 678516
Number of successful extensions: 4361
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4272
Number of HSP's successfully gapped: 21
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081752.2| probable palmitoyltransferase ZDHHC24 isoform a... 317 8e-87
Alignment gi|NP_001161989.1| probable palmitoyltransferase ZDHHC24 isofor... 142 3e-34
Alignment gi|NP_001161988.1| probable palmitoyltransferase ZDHHC24 isofor... 142 3e-34
Alignment gi|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus]. 64 1e-10
Alignment gi|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus]. 62 5e-10
Alignment gi|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musc... 61 1e-09
Alignment gi|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musc... 59 4e-09
Alignment gi|NP_848482.1| palmitoyltransferase ZDHHC2 [Mus musculus]. 59 5e-09
Alignment gi|NP_780567.1| palmitoyltransferase ZDHHC15 [Mus musculus]. 57 3e-08
Alignment gi|NP_780369.1| probable palmitoyltransferase ZDHHC1 [Mus muscu... 55 6e-08
>ref|NP_081752.2| probable palmitoyltransferase ZDHHC24 isoform a [Mus musculus].
Length = 284
Score = 317 bits (812), Expect = 8e-87
Identities = 160/269 (59%), Positives = 166/269 (61%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MG+ WA AEGA AR+PLVLTALWAA V LE+AYV+V
Sbjct: 1 MGESWAARGAEGAPARMPLVLTALWAAVVVLELAYVMVLGPGPPPLGPLARALQLALAAY 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61 QLLNLLGNVVLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
DHHCRLLG CVGFHNYRPF PALS
Sbjct: 121 DHHCRLLGCCVGFHNYRPFLCLLLHSAGVLLHISVLLGPALSALLQAHSALYTVALLLLP 180
Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
TG+VSLAQFALAFV DTCV FHGMLLLRGQTTWEWARG H YDLG
Sbjct: 181 WLMLLTGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLG 240
Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
CHNLQAALGPRW LVW W FLASPLPGD
Sbjct: 241 TCHNLQAALGPRWALVWFWPFLASPLPGD 269
>ref|NP_001161989.1| probable palmitoyltransferase ZDHHC24 isoform b [Mus musculus].
Length = 102
Score = 142 bits (359), Expect = 3e-34
Identities = 65/84 (77%), Positives = 66/84 (78%)
Frame = +2
Query: 674 TGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNL 853
TG+VSLAQFALAFV DTCV FHGMLLLRGQTTWEWARG H YDLG CHNL
Sbjct: 4 TGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLGTCHNL 63
Query: 854 QAALGPRWVLVWLWTFLASPLPGD 925
QAALGPRW LVW W FLASPLPGD
Sbjct: 64 QAALGPRWALVWFWPFLASPLPGD 87
>ref|NP_001161988.1| probable palmitoyltransferase ZDHHC24 isoform b [Mus musculus].
Length = 102
Score = 142 bits (359), Expect = 3e-34
Identities = 65/84 (77%), Positives = 66/84 (78%)
Frame = +2
Query: 674 TGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNL 853
TG+VSLAQFALAFV DTCV FHGMLLLRGQTTWEWARG H YDLG CHNL
Sbjct: 4 TGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLGTCHNL 63
Query: 854 QAALGPRWVLVWLWTFLASPLPGD 925
QAALGPRW LVW W FLASPLPGD
Sbjct: 64 QAALGPRWALVWFWPFLASPLPGD 87
>ref|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus].
Length = 380
Score = 64.3 bits (155), Expect = 1e-10
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P R VM+ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 166 RPPPRTREVMINGQTVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 223
Query: 518 HNYRPF 535
NYR F
Sbjct: 224 RNYRFF 229
>ref|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus].
Length = 364
Score = 62.4 bits (150), Expect = 5e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musculus].
Length = 368
Score = 60.8 bits (146), Expect = 1e-09
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R+ HCSAC C+L+ DHHC + CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDRCVLKMDHHCPWVNNCVGFTNYKFF 171
>ref|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musculus].
Length = 489
Score = 59.3 bits (142), Expect = 4e-09
Identities = 27/66 (40%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ + DHHC +G CVG
Sbjct: 147 RPPPRTKEVVINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVEQFDHHCPWVGNCVGK 204
Query: 518 HNYRPF 535
NYR F
Sbjct: 205 RNYRFF 210
>ref|NP_848482.1| palmitoyltransferase ZDHHC2 [Mus musculus].
Length = 366
Score = 58.9 bits (141), Expect = 5e-09
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R HCS C CIL+ DHHC + CVGF NY+ F
Sbjct: 127 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 171
>ref|NP_780567.1| palmitoyltransferase ZDHHC15 [Mus musculus].
Length = 337
Score = 56.6 bits (135), Expect = 3e-08
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
+C +C P R HCS C +C+L+ DHHC + C+GF NY+ F
Sbjct: 130 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174
>ref|NP_780369.1| probable palmitoyltransferase ZDHHC1 [Mus musculus].
Length = 484
Score = 55.5 bits (132), Expect = 6e-08
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
+C C V RS HCSAC C+ DHHC+ L CVG NYR F
Sbjct: 132 HCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLF 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,285,937
Number of extensions: 838655
Number of successful extensions: 5618
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5285
Number of HSP's successfully gapped: 23
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997223.1| probable palmitoyltransferase ZDHHC24 [Homo sap... 339 2e-93
Alignment gi|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens]. 63 4e-10
Alignment gi|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens]. 62 6e-10
Alignment gi|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens]. 62 6e-10
Alignment gi|NP_694983.2| probable palmitoyltransferase ZDHHC20 [Homo sap... 62 7e-10
Alignment gi|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2... 61 2e-09
Alignment gi|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1... 61 2e-09
Alignment gi|NP_057437.1| palmitoyltransferase ZDHHC2 [Homo sapiens]. 59 6e-09
Alignment gi|NP_001139728.1| palmitoyltransferase ZDHHC15 isoform 2 [Homo... 57 3e-08
Alignment gi|NP_659406.1| palmitoyltransferase ZDHHC15 isoform 1 [Homo sa... 57 3e-08
>ref|NP_997223.1| probable palmitoyltransferase ZDHHC24 [Homo sapiens].
Length = 284
Score = 339 bits (869), Expect = 2e-93
Identities = 171/269 (63%), Positives = 175/269 (65%)
Frame = +2
Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
MGQPWA GS +GA A+LPLVLTALWAAAVGLE+AYVLV
Sbjct: 1 MGQPWAAGSTDGAPAQLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARALQLALAAF 60
Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61 QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120
Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
DHHCRLLGRCVGF NYRPF PALS
Sbjct: 121 DHHCRLLGRCVGFGNYRPFLCLLLHAAGVLLHVSVLLGPALSALLRAHTPLHMAALLLLP 180
Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
TGRVSLAQFALAFVTDTCV FHGMLLLRGQTTWEWARGQHSYDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLG 240
Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
PCHNLQAALGPRW LVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWALVWLWPFLASPLPGD 269
>ref|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens].
Length = 388
Score = 62.8 bits (151), Expect = 4e-10
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P R V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 174 RPPPRTREVLINGQMVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 231
Query: 518 HNYRPF 535
NYR F
Sbjct: 232 RNYRFF 237
>ref|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens].
Length = 364
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens].
Length = 364
Score = 62.4 bits (150), Expect = 6e-10
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YCY C+ PPR+ HCS C C+ R DHHC +G CVG NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184
>ref|NP_694983.2| probable palmitoyltransferase ZDHHC20 [Homo sapiens].
Length = 354
Score = 62.0 bits (149), Expect = 7e-10
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R+ HCSAC CIL+ DHHC + CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDSCILKMDHHCPWVNNCVGFSNYKFF 171
>ref|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2 [Homo sapiens].
Length = 473
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204
Query: 518 HNYRPF 535
NYR F
Sbjct: 205 RNYRFF 210
>ref|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1 [Homo sapiens].
Length = 488
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +2
Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
R P + V++ G+ + YC+ C+ PPR+ HCS C C+ R DHHC +G CVG
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204
Query: 518 HNYRPF 535
NYR F
Sbjct: 205 RNYRFF 210
>ref|NP_057437.1| palmitoyltransferase ZDHHC2 [Homo sapiens].
Length = 367
Score = 58.9 bits (141), Expect = 6e-09
Identities = 24/45 (53%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
YC +CQ P R HCS C CIL+ DHHC + CVGF NY+ F
Sbjct: 128 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 172
>ref|NP_001139728.1| palmitoyltransferase ZDHHC15 isoform 2 [Homo sapiens].
Length = 328
Score = 56.6 bits (135), Expect = 3e-08
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
+C +C P R HCS C +C+L+ DHHC + C+GF NY+ F
Sbjct: 121 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 165
>ref|NP_659406.1| palmitoyltransferase ZDHHC15 isoform 1 [Homo sapiens].
Length = 337
Score = 56.6 bits (135), Expect = 3e-08
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
+C +C P R HCS C +C+L+ DHHC + C+GF NY+ F
Sbjct: 130 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,756,330
Number of extensions: 1026341
Number of successful extensions: 6332
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 6152
Number of HSP's successfully gapped: 31
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014291
(930 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 783 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 783 bits (395), Expect = 0.0
Identities = 398/399 (99%)
Strand = Plus / Minus
Query: 1 gctcgcctcacctcttcgcagcttctattggtcgtggcagacgtccttttgacactatcc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825518 gctcgcctcacctcttcacagcttctattggtcgtggcagacgtccttttgacactatcc 4825459
Query: 61 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825458 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 4825399
Query: 121 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825398 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 4825339
Query: 181 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825338 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 4825279
Query: 241 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825278 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 4825219
Query: 301 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825218 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 4825159
Query: 361 tgtgatgctggccggccgtggtctgggccagggctgggc 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4825158 tgtgatgctggccggccgtggtctgggccagggctgggc 4825120
Score = 783 bits (395), Expect = 0.0
Identities = 398/399 (99%)
Strand = Plus / Plus
Query: 1 gctcgcctcacctcttcgcagcttctattggtcgtggcagacgtccttttgacactatcc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950439 gctcgcctcacctcttcacagcttctattggtcgtggcagacgtccttttgacactatcc 4950498
Query: 61 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950499 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 4950558
Query: 121 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950559 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 4950618
Query: 181 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950619 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 4950678
Query: 241 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950679 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 4950738
Query: 301 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950739 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 4950798
Query: 361 tgtgatgctggccggccgtggtctgggccagggctgggc 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4950799 tgtgatgctggccggccgtggtctgggccagggctgggc 4950837
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 400 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823706 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 4823647
Query: 460 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823646 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 4823587
Query: 520 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823586 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 4823527
Query: 580 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823526 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 4823467
Query: 640 cgccctcctcctgctgccctggctcatgctgctcacagg 678
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4823466 cgccctcctcctgctgccctggctcatgctgctcacagg 4823428
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Plus
Query: 400 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952251 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 4952310
Query: 460 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952311 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 4952370
Query: 520 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952371 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 4952430
Query: 580 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952431 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 4952490
Query: 640 cgccctcctcctgctgccctggctcatgctgctcacagg 678
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4952491 cgccctcctcctgctgccctggctcatgctgctcacagg 4952529
Score = 484 bits (244), Expect = e-134
Identities = 253/256 (98%)
Strand = Plus / Minus
Query: 675 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818639 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 4818580
Query: 735 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818579 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 4818520
Query: 795 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818519 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 4818460
Query: 855 aggcggcgctggggccgcgctgggtccttgtctggctctggacctttctggcctccccgc 914
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 4818459 aggcggcgctggggccgcgctgggtccttgtctggctctggcccttcctggcctccccgc 4818400
Query: 915 tgcctggagactggat 930
||||||||||| ||||
Sbjct: 4818399 tgcctggagacgggat 4818384
Score = 484 bits (244), Expect = e-134
Identities = 253/256 (98%)
Strand = Plus / Plus
Query: 675 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957219 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 4957278
Query: 735 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957279 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 4957338
Query: 795 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957339 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 4957398
Query: 855 aggcggcgctggggccgcgctgggtccttgtctggctctggacctttctggcctccccgc 914
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 4957399 aggcggcgctggggccgcgctgggtccttgtctggctctggcccttcctggcctccccgc 4957458
Query: 915 tgcctggagactggat 930
||||||||||| ||||
Sbjct: 4957459 tgcctggagacgggat 4957474
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,825,133
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 6
Length of query: 930
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 909
Effective length of database: 2,808,413,156
Effective search space: 2552847558804
Effective search space used: 2552847558804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)