Animal-Genome cDNA 20110601C-014291


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001192908.1| probable palmitoyltransferase ZDHHC24 [Bos t...   342   4e-94
Alignment   gi|XP_002699404.1| PREDICTED: DHHC-types zinc finger transcript...   342   4e-94
Alignment   gi|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing...    64   2e-10
Alignment   gi|NP_001069856.1| probable palmitoyltransferase ZDHHC20 [Bos t...    63   3e-10
Alignment   gi|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus].          62   5e-10
Alignment   gi|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos t...    61   2e-09
Alignment   gi|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14...    61   2e-09
Alignment   gi|XP_002698727.1| PREDICTED: zinc finger, DHHC domain containi...    59   6e-09
Alignment   gi|XP_616436.3| PREDICTED: zinc finger, DHHC domain containing ...    59   6e-09
Alignment   gi|XP_002700034.1| PREDICTED: zinc finger, DHHC-type containing...    57   3e-08

>ref|NP_001192908.1| probable palmitoyltransferase ZDHHC24 [Bos taurus].
          Length = 284

 Score =  342 bits (876), Expect = 4e-94
 Identities = 173/269 (64%), Positives = 177/269 (65%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MGQPWAVG+AE + ARLPLVLTALWAAAVGLE+AYVLV                      
Sbjct: 1   MGQPWAVGTAEASPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARTLQVALAAF 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61  QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
           DHHCRLLGRCVGF NYRPF                   PALS                  
Sbjct: 121 DHHCRLLGRCVGFRNYRPFLCLLLHGAGVLLHASVLLGPALSALLRAHTPLHTAALLLLP 180

Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
                TGRVSLAQFALAFVTDTCV           FHGMLLLRGQTTWEWARGQH+YDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHAYDLG 240

Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
           PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269


>ref|XP_002699404.1| PREDICTED: DHHC-types zinc finger transcription factor family
           member (dhhc-1)-like [Bos taurus].
          Length = 284

 Score =  342 bits (876), Expect = 4e-94
 Identities = 173/269 (64%), Positives = 177/269 (65%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MGQPWAVG+AE + ARLPLVLTALWAAAVGLE+AYVLV                      
Sbjct: 1   MGQPWAVGTAEASPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARTLQVALAAF 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61  QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
           DHHCRLLGRCVGF NYRPF                   PALS                  
Sbjct: 121 DHHCRLLGRCVGFRNYRPFLCLLLHGAGVLLHASVLLGPALSALLRAHTPLHTAALLLLP 180

Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
                TGRVSLAQFALAFVTDTCV           FHGMLLLRGQTTWEWARGQH+YDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHAYDLG 240

Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
           PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269


>ref|XP_002685806.1| PREDICTED: zinc finger, DHHC-type containing 18-like [Bos taurus].
          Length = 430

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/66 (45%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  R VM+ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 189 RPPPRTREVMINGQVVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGK 246

Query: 518 HNYRPF 535
            NYR F
Sbjct: 247 RNYRFF 252


>ref|NP_001069856.1| probable palmitoyltransferase ZDHHC20 [Bos taurus].
          Length = 365

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R+ HCSAC +CIL+ DHHC  +  CVGF NY+ F
Sbjct: 127 YCERCQLIKPDRAHHCSACDMCILKMDHHCPWVNNCVGFSNYKFF 171


>ref|NP_001029733.2| palmitoyltransferase ZDHHC9 [Bos taurus].
          Length = 363

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|NP_001178108.1| probable palmitoyltransferase ZDHHC14 [Bos taurus].
          Length = 488

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204

Query: 518 HNYRPF 535
            NYR F
Sbjct: 205 RNYRFF 210


>ref|XP_595621.3| PREDICTED: zinc finger, DHHC-type containing 14 isoform 2 [Bos
           taurus].
          Length = 473

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204

Query: 518 HNYRPF 535
            NYR F
Sbjct: 205 RNYRFF 210


>ref|XP_002698727.1| PREDICTED: zinc finger, DHHC domain containing 2-like [Bos taurus].
          Length = 344

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R  HCS C  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 105 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 149


>ref|XP_616436.3| PREDICTED: zinc finger, DHHC domain containing 2-like [Bos taurus].
          Length = 344

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R  HCS C  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 105 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 149


>ref|XP_002700034.1| PREDICTED: zinc finger, DHHC-type containing 15-like isoform 2 [Bos
           taurus].
          Length = 328

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           +C +C    P R  HCS C +C+L+ DHHC  +  C+GF NY+ F
Sbjct: 121 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 165


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,300,555
Number of extensions: 1041591
Number of successful extensions: 6930
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6736
Number of HSP's successfully gapped: 29
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540829.2| PREDICTED: similar to zinc finger, DHHC domain ...   350   1e-96
Alignment   gi|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain c...    64   2e-10
Alignment   gi|XP_543171.2| PREDICTED: similar to DHHC-containing protein 2...    63   3e-10
Alignment   gi|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain c...    62   6e-10
Alignment   gi|XP_854971.1| PREDICTED: similar to NEW1 domain containing pr...    61   2e-09

>ref|XP_540829.2| PREDICTED: similar to zinc finger, DHHC domain containing 24 [Canis
           familiaris].
          Length = 284

 Score =  350 bits (898), Expect = 1e-96
 Identities = 177/269 (65%), Positives = 179/269 (66%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MGQPWAVGSAEGA ARLPLVLTALWAAAVGLE+AYVLV                      
Sbjct: 1   MGQPWAVGSAEGAPARLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARALQLVLAAF 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61  QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
           DHHCRLLGRCVGFHNYRPF                   PALS                  
Sbjct: 121 DHHCRLLGRCVGFHNYRPFLCLLLHAAGVLLHISVLLGPALSALLRAHAPLHTAALLLLP 180

Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
                TGRVSLAQFALAFVTDTCV           FHGMLLLRGQTTWEWARGQHSYDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLG 240

Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
           PCHNLQAALGPRWVLVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWVLVWLWPFLASPLPGD 269


>ref|XP_854957.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 18
           [Canis familiaris].
          Length = 293

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/66 (45%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  R VM+ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 71  RPPPRTREVMINGQMVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 128

Query: 518 HNYRPF 535
            NYR F
Sbjct: 129 RNYRFF 134


>ref|XP_543171.2| PREDICTED: similar to DHHC-containing protein 20 [Canis
           familiaris].
          Length = 440

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R+ HCSAC +CIL+ DHHC  +  CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDMCILKMDHHCPWVNNCVGFSNYKFF 171


>ref|XP_852439.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 2 [Canis familiaris].
          Length = 364

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_865704.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 7 [Canis familiaris].
          Length = 361

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 137 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 181


>ref|XP_865688.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 6 [Canis familiaris].
          Length = 381

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_549247.2| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 1 [Canis familiaris].
          Length = 335

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_865655.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 5 [Canis familiaris].
          Length = 311

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_865638.1| PREDICTED: similar to Zinc finger DHHC domain containing protein 9
           (Zinc finger protein 379) isoform 4 [Canis familiaris].
          Length = 365

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_854971.1| PREDICTED: similar to NEW1 domain containing protein isoform 1
           [Canis familiaris].
          Length = 420

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 79  RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 136

Query: 518 HNYRPF 535
            NYR F
Sbjct: 137 RNYRFF 142


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,506,634
Number of extensions: 1064486
Number of successful extensions: 6765
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 6610
Number of HSP's successfully gapped: 34
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003122542.2| PREDICTED: probable palmitoyltransferase ZDH...   213   1e-55
Alignment   gi|XP_003353807.1| PREDICTED: probable palmitoyltransferase ZDH...   149   2e-36
Alignment   gi|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus...    64   1e-10
Alignment   gi|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isofo...    62   3e-10
Alignment   gi|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus ...    62   3e-10
Alignment   gi|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDH...    61   1e-09
Alignment   gi|XP_003134243.2| PREDICTED: palmitoyltransferase ZDHHC2-like ...    59   4e-09
Alignment   gi|XP_003359362.1| PREDICTED: probable palmitoyltransferase ZDH...    55   4e-08
Alignment   gi|XP_001928860.1| PREDICTED: probable palmitoyltransferase ZDH...    55   4e-08
Alignment   gi|XP_001928850.1| PREDICTED: probable palmitoyltransferase ZDH...    55   4e-08

>ref|XP_003122542.2| PREDICTED: probable palmitoyltransferase ZDHHC24-like [Sus scrofa].
          Length = 218

 Score =  213 bits (542), Expect = 1e-55
 Identities = 104/139 (74%), Positives = 104/139 (74%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLV                      
Sbjct: 1   MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVLGPGPPPLGPLARTLQLALAAF 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR
Sbjct: 61  QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPF 535
           DHHCRLLGRCVGFHNYRPF
Sbjct: 121 DHHCRLLGRCVGFHNYRPF 139


>ref|XP_003353807.1| PREDICTED: probable palmitoyltransferase ZDHHC24-like [Sus scrofa].
          Length = 108

 Score =  149 bits (377), Expect = 2e-36
 Identities = 69/81 (85%), Positives = 69/81 (85%)
 Frame = +2

Query: 683 VSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA 862
           VSLAQFALAFVTDTCV           FHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA
Sbjct: 13  VSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLGPCHNLQAA 72

Query: 863 LGPRWVLVWLWTFLASPLPGD 925
           LGPRWVLVWLW FLASPLPGD
Sbjct: 73  LGPRWVLVWLWPFLASPLPGD 93


>ref|XP_003127782.2| PREDICTED: palmitoyltransferase ZDHHC18 [Sus scrofa].
          Length = 345

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 30/66 (45%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  R VM+ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 131 RPPPRTREVMINGQVVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 188

Query: 518 HNYRPF 535
            NYR F
Sbjct: 189 RNYRFF 194


>ref|XP_003135413.2| PREDICTED: palmitoyltransferase ZDHHC9 isoform 2 [Sus scrofa].
          Length = 364

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_003360487.1| PREDICTED: palmitoyltransferase ZDHHC9 [Sus scrofa].
          Length = 364

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|XP_003121171.2| PREDICTED: probable palmitoyltransferase ZDHHC14-like [Sus scrofa].
          Length = 410

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 69  RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 126

Query: 518 HNYRPF 535
            NYR F
Sbjct: 127 RNYRFF 132


>ref|XP_003134243.2| PREDICTED: palmitoyltransferase ZDHHC2-like [Sus scrofa].
          Length = 457

 Score = 58.9 bits (141), Expect = 4e-09
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R  HCS C  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 218 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 262


>ref|XP_003359362.1| PREDICTED: probable palmitoyltransferase ZDHHC16 [Sus scrofa].
          Length = 296

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           C +C +  P R+ HCS C  C+L+ DHHC  L  CVG +N+R F
Sbjct: 92  CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 135


>ref|XP_001928860.1| PREDICTED: probable palmitoyltransferase ZDHHC16 isoform 2 [Sus
           scrofa].
          Length = 377

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           C +C +  P R+ HCS C  C+L+ DHHC  L  CVG +N+R F
Sbjct: 157 CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 200


>ref|XP_001928850.1| PREDICTED: probable palmitoyltransferase ZDHHC16 isoform 1 [Sus
           scrofa].
          Length = 361

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 404 CYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           C +C +  P R+ HCS C  C+L+ DHHC  L  CVG +N+R F
Sbjct: 157 CKKCINPKPARTHHCSICNRCVLKMDHHCPWLNNCVGHYNHRYF 200


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,585,778
Number of extensions: 678516
Number of successful extensions: 4361
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4272
Number of HSP's successfully gapped: 21
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081752.2| probable palmitoyltransferase ZDHHC24 isoform a...   317   8e-87
Alignment   gi|NP_001161989.1| probable palmitoyltransferase ZDHHC24 isofor...   142   3e-34
Alignment   gi|NP_001161988.1| probable palmitoyltransferase ZDHHC24 isofor...   142   3e-34
Alignment   gi|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus].       64   1e-10
Alignment   gi|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus].           62   5e-10
Alignment   gi|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musc...    61   1e-09
Alignment   gi|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musc...    59   4e-09
Alignment   gi|NP_848482.1| palmitoyltransferase ZDHHC2 [Mus musculus].           59   5e-09
Alignment   gi|NP_780567.1| palmitoyltransferase ZDHHC15 [Mus musculus].          57   3e-08
Alignment   gi|NP_780369.1| probable palmitoyltransferase ZDHHC1 [Mus muscu...    55   6e-08

>ref|NP_081752.2| probable palmitoyltransferase ZDHHC24 isoform a [Mus musculus].
          Length = 284

 Score =  317 bits (812), Expect = 8e-87
 Identities = 160/269 (59%), Positives = 166/269 (61%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MG+ WA   AEGA AR+PLVLTALWAA V LE+AYV+V                      
Sbjct: 1   MGESWAARGAEGAPARMPLVLTALWAAVVVLELAYVMVLGPGPPPLGPLARALQLALAAY 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61  QLLNLLGNVVLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
           DHHCRLLG CVGFHNYRPF                   PALS                  
Sbjct: 121 DHHCRLLGCCVGFHNYRPFLCLLLHSAGVLLHISVLLGPALSALLQAHSALYTVALLLLP 180

Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
                TG+VSLAQFALAFV DTCV           FHGMLLLRGQTTWEWARG H YDLG
Sbjct: 181 WLMLLTGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLG 240

Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
            CHNLQAALGPRW LVW W FLASPLPGD
Sbjct: 241 TCHNLQAALGPRWALVWFWPFLASPLPGD 269


>ref|NP_001161989.1| probable palmitoyltransferase ZDHHC24 isoform b [Mus musculus].
          Length = 102

 Score =  142 bits (359), Expect = 3e-34
 Identities = 65/84 (77%), Positives = 66/84 (78%)
 Frame = +2

Query: 674 TGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNL 853
           TG+VSLAQFALAFV DTCV           FHGMLLLRGQTTWEWARG H YDLG CHNL
Sbjct: 4   TGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLGTCHNL 63

Query: 854 QAALGPRWVLVWLWTFLASPLPGD 925
           QAALGPRW LVW W FLASPLPGD
Sbjct: 64  QAALGPRWALVWFWPFLASPLPGD 87


>ref|NP_001161988.1| probable palmitoyltransferase ZDHHC24 isoform b [Mus musculus].
          Length = 102

 Score =  142 bits (359), Expect = 3e-34
 Identities = 65/84 (77%), Positives = 66/84 (78%)
 Frame = +2

Query: 674 TGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLGPCHNL 853
           TG+VSLAQFALAFV DTCV           FHGMLLLRGQTTWEWARG H YDLG CHNL
Sbjct: 4   TGKVSLAQFALAFVVDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGHHCYDLGTCHNL 63

Query: 854 QAALGPRWVLVWLWTFLASPLPGD 925
           QAALGPRW LVW W FLASPLPGD
Sbjct: 64  QAALGPRWALVWFWPFLASPLPGD 87


>ref|NP_001017968.2| palmitoyltransferase ZDHHC18 [Mus musculus].
          Length = 380

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 30/66 (45%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  R VM+ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 166 RPPPRTREVMINGQTVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 223

Query: 518 HNYRPF 535
            NYR F
Sbjct: 224 RNYRFF 229


>ref|NP_766053.1| palmitoyltransferase ZDHHC9 [Mus musculus].
          Length = 364

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|NP_083768.4| probable palmitoyltransferase ZDHHC20 [Mus musculus].
          Length = 368

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R+ HCSAC  C+L+ DHHC  +  CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDRCVLKMDHHCPWVNNCVGFTNYKFF 171


>ref|NP_666185.3| probable palmitoyltransferase ZDHHC14 [Mus musculus].
          Length = 489

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 27/66 (40%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ + DHHC  +G CVG 
Sbjct: 147 RPPPRTKEVVINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVEQFDHHCPWVGNCVGK 204

Query: 518 HNYRPF 535
            NYR F
Sbjct: 205 RNYRFF 210


>ref|NP_848482.1| palmitoyltransferase ZDHHC2 [Mus musculus].
          Length = 366

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R  HCS C  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 127 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 171


>ref|NP_780567.1| palmitoyltransferase ZDHHC15 [Mus musculus].
          Length = 337

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           +C +C    P R  HCS C +C+L+ DHHC  +  C+GF NY+ F
Sbjct: 130 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174


>ref|NP_780369.1| probable palmitoyltransferase ZDHHC1 [Mus musculus].
          Length = 484

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           +C  C   V  RS HCSAC  C+   DHHC+ L  CVG  NYR F
Sbjct: 132 HCNLCDVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLF 176


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,285,937
Number of extensions: 838655
Number of successful extensions: 5618
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 5285
Number of HSP's successfully gapped: 23
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_997223.1| probable palmitoyltransferase ZDHHC24 [Homo sap...   339   2e-93
Alignment   gi|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens].          63   4e-10
Alignment   gi|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens].           62   6e-10
Alignment   gi|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens].        62   6e-10
Alignment   gi|NP_694983.2| probable palmitoyltransferase ZDHHC20 [Homo sap...    62   7e-10
Alignment   gi|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2...    61   2e-09
Alignment   gi|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1...    61   2e-09
Alignment   gi|NP_057437.1| palmitoyltransferase ZDHHC2 [Homo sapiens].           59   6e-09
Alignment   gi|NP_001139728.1| palmitoyltransferase ZDHHC15 isoform 2 [Homo...    57   3e-08
Alignment   gi|NP_659406.1| palmitoyltransferase ZDHHC15 isoform 1 [Homo sa...    57   3e-08

>ref|NP_997223.1| probable palmitoyltransferase ZDHHC24 [Homo sapiens].
          Length = 284

 Score =  339 bits (869), Expect = 2e-93
 Identities = 171/269 (63%), Positives = 175/269 (65%)
 Frame = +2

Query: 119 MGQPWAVGSAEGAHARLPLVLTALWAAAVGLEVAYVLVXXXXXXXXXXXXXXXXXXXXXX 298
           MGQPWA GS +GA A+LPLVLTALWAAAVGLE+AYVLV                      
Sbjct: 1   MGQPWAAGSTDGAPAQLPLVLTALWAAAVGLELAYVLVLGPGPPPLGPLARALQLALAAF 60

Query: 299 XXXXXXXXXXXXXRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRR 478
                        RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACR+CILRR
Sbjct: 61  QLLNLLGNVGLFLRSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRVCILRR 120

Query: 479 DHHCRLLGRCVGFHNYRPFXXXXXXXXXXXXXXXXXXXPALSXXXXXXXXXXXXXXXXXX 658
           DHHCRLLGRCVGF NYRPF                   PALS                  
Sbjct: 121 DHHCRLLGRCVGFGNYRPFLCLLLHAAGVLLHVSVLLGPALSALLRAHTPLHMAALLLLP 180

Query: 659 XXXXXTGRVSLAQFALAFVTDTCVXXXXXXXXXXXFHGMLLLRGQTTWEWARGQHSYDLG 838
                TGRVSLAQFALAFVTDTCV           FHGMLLLRGQTTWEWARGQHSYDLG
Sbjct: 181 WLMLLTGRVSLAQFALAFVTDTCVAGALLCGAGLLFHGMLLLRGQTTWEWARGQHSYDLG 240

Query: 839 PCHNLQAALGPRWVLVWLWTFLASPLPGD 925
           PCHNLQAALGPRW LVWLW FLASPLPGD
Sbjct: 241 PCHNLQAALGPRWALVWLWPFLASPLPGD 269


>ref|NP_115659.1| palmitoyltransferase ZDHHC18 [Homo sapiens].
          Length = 388

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 29/66 (43%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  R V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 174 RPPPRTREVLINGQMVKL--KYCFTCKMFRPPRTSHCSVCDNCVERFDHHCPWVGNCVGR 231

Query: 518 HNYRPF 535
            NYR F
Sbjct: 232 RNYRFF 237


>ref|NP_057116.2| palmitoyltransferase ZDHHC9 [Homo sapiens].
          Length = 364

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|NP_001008223.1| palmitoyltransferase ZDHHC9 [Homo sapiens].
          Length = 364

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YCY C+   PPR+ HCS C  C+ R DHHC  +G CVG  NYR F
Sbjct: 140 YCYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYF 184


>ref|NP_694983.2| probable palmitoyltransferase ZDHHC20 [Homo sapiens].
          Length = 354

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 25/45 (55%), Positives = 30/45 (66%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R+ HCSAC  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 127 YCEKCQLIKPDRAHHCSACDSCILKMDHHCPWVNNCVGFSNYKFF 171


>ref|NP_714968.1| probable palmitoyltransferase ZDHHC14 isoform 2 [Homo sapiens].
          Length = 473

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204

Query: 518 HNYRPF 535
            NYR F
Sbjct: 205 RNYRFF 210


>ref|NP_078906.2| probable palmitoyltransferase ZDHHC14 isoform 1 [Homo sapiens].
          Length = 488

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +2

Query: 338 RSDPSIRGVMLAGRGLGQGWAYCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGF 517
           R  P  + V++ G+ +     YC+ C+   PPR+ HCS C  C+ R DHHC  +G CVG 
Sbjct: 147 RPPPRTKEVIINGQTVKL--KYCFTCKIFRPPRASHCSLCDNCVERFDHHCPWVGNCVGK 204

Query: 518 HNYRPF 535
            NYR F
Sbjct: 205 RNYRFF 210


>ref|NP_057437.1| palmitoyltransferase ZDHHC2 [Homo sapiens].
          Length = 367

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 24/45 (53%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           YC +CQ   P R  HCS C  CIL+ DHHC  +  CVGF NY+ F
Sbjct: 128 YCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 172


>ref|NP_001139728.1| palmitoyltransferase ZDHHC15 isoform 2 [Homo sapiens].
          Length = 328

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           +C +C    P R  HCS C +C+L+ DHHC  +  C+GF NY+ F
Sbjct: 121 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 165


>ref|NP_659406.1| palmitoyltransferase ZDHHC15 isoform 1 [Homo sapiens].
          Length = 337

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 401 YCYQCQSQVPPRSGHCSACRICILRRDHHCRLLGRCVGFHNYRPF 535
           +C +C    P R  HCS C +C+L+ DHHC  +  C+GF NY+ F
Sbjct: 130 FCDRCHLIKPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFF 174


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,756,330
Number of extensions: 1026341
Number of successful extensions: 6332
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 6152
Number of HSP's successfully gapped: 31
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014291
         (930 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         783   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  783 bits (395), Expect = 0.0
 Identities = 398/399 (99%)
 Strand = Plus / Minus

                                                                           
Query: 1       gctcgcctcacctcttcgcagcttctattggtcgtggcagacgtccttttgacactatcc 60
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825518 gctcgcctcacctcttcacagcttctattggtcgtggcagacgtccttttgacactatcc 4825459

                                                                           
Query: 61      ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825458 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 4825399

                                                                           
Query: 121     ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825398 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 4825339

                                                                           
Query: 181     cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825338 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 4825279

                                                                           
Query: 241     tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825278 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 4825219

                                                                           
Query: 301     gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825218 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 4825159

                                                      
Query: 361     tgtgatgctggccggccgtggtctgggccagggctgggc 399
               |||||||||||||||||||||||||||||||||||||||
Sbjct: 4825158 tgtgatgctggccggccgtggtctgggccagggctgggc 4825120



 Score =  783 bits (395), Expect = 0.0
 Identities = 398/399 (99%)
 Strand = Plus / Plus

                                                                           
Query: 1       gctcgcctcacctcttcgcagcttctattggtcgtggcagacgtccttttgacactatcc 60
               ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950439 gctcgcctcacctcttcacagcttctattggtcgtggcagacgtccttttgacactatcc 4950498

                                                                           
Query: 61      ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950499 ccgccccgatacggaagcggcggggtactcccgatcccaccgcgggtgggcccaagccat 4950558

                                                                           
Query: 121     ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950559 ggggcagccctgggcggtggggagcgccgagggggcacacgcgcggctgccccttgtgct 4950618

                                                                           
Query: 181     cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950619 cactgcgctgtgggccgcggctgtgggcttggaggtggcctacgtgctggtgcttggtcc 4950678

                                                                           
Query: 241     tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950679 tgggcctcccccgctgggacccttggcccggaccttgcagcttgccctggcagccttcca 4950738

                                                                           
Query: 301     gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4950739 gctgctaaacctactgggcaacgtggggctcttcctgcgctcggatcccagcatccgggg 4950798

                                                      
Query: 361     tgtgatgctggccggccgtggtctgggccagggctgggc 399
               |||||||||||||||||||||||||||||||||||||||
Sbjct: 4950799 tgtgatgctggccggccgtggtctgggccagggctgggc 4950837



 Score =  553 bits (279), Expect = e-155
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                           
Query: 400     ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 459
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823706 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 4823647

                                                                           
Query: 460     catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 519
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823646 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 4823587

                                                                           
Query: 520     caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 579
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823586 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 4823527

                                                                           
Query: 580     tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 639
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823526 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 4823467

                                                      
Query: 640     cgccctcctcctgctgccctggctcatgctgctcacagg 678
               |||||||||||||||||||||||||||||||||||||||
Sbjct: 4823466 cgccctcctcctgctgccctggctcatgctgctcacagg 4823428



 Score =  553 bits (279), Expect = e-155
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                           
Query: 400     ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 459
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952251 ttactgctaccagtgccaaagccaggtgccgccacgcagtgggcattgctccgcctgtcg 4952310

                                                                           
Query: 460     catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 519
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952311 catctgcatcctccgccgggaccaccactgccgcctgctgggccgctgcgtgggcttcca 4952370

                                                                           
Query: 520     caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 579
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952371 caactaccggcccttcctgtgtctgctgcttcacgccgcaggtgtcctgctgcacgtctc 4952430

                                                                           
Query: 580     tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 639
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952431 tgtgctgctgggcccggccctgtcagctctgctgcgagcccacacgcccctccacacggc 4952490

                                                      
Query: 640     cgccctcctcctgctgccctggctcatgctgctcacagg 678
               |||||||||||||||||||||||||||||||||||||||
Sbjct: 4952491 cgccctcctcctgctgccctggctcatgctgctcacagg 4952529



 Score =  484 bits (244), Expect = e-134
 Identities = 253/256 (98%)
 Strand = Plus / Minus

                                                                           
Query: 675     caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 734
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818639 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 4818580

                                                                           
Query: 735     gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 794
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818579 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 4818520

                                                                           
Query: 795     ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 854
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818519 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 4818460

                                                                           
Query: 855     aggcggcgctggggccgcgctgggtccttgtctggctctggacctttctggcctccccgc 914
               ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 4818459 aggcggcgctggggccgcgctgggtccttgtctggctctggcccttcctggcctccccgc 4818400

                               
Query: 915     tgcctggagactggat 930
               ||||||||||| ||||
Sbjct: 4818399 tgcctggagacgggat 4818384



 Score =  484 bits (244), Expect = e-134
 Identities = 253/256 (98%)
 Strand = Plus / Plus

                                                                           
Query: 675     caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 734
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957219 caggcagagtgtcgctggcgcagttcgccctggccttcgtgaccgacacgtgtgtggcag 4957278

                                                                           
Query: 735     gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 794
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957279 gtgcgctgctgtgcggggccggactgctcttccatgggatgctgctgctgaggggccaga 4957338

                                                                           
Query: 795     ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 854
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957339 ccacgtgggagtgggctcggggccagcactcttacgacctggggccctgccataacctgc 4957398

                                                                           
Query: 855     aggcggcgctggggccgcgctgggtccttgtctggctctggacctttctggcctccccgc 914
               ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 4957399 aggcggcgctggggccgcgctgggtccttgtctggctctggcccttcctggcctccccgc 4957458

                               
Query: 915     tgcctggagactggat 930
               ||||||||||| ||||
Sbjct: 4957459 tgcctggagacgggat 4957474


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,825,133
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 6
Length of query: 930
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 909
Effective length of database: 2,808,413,156
Effective search space: 2552847558804
Effective search space used: 2552847558804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)