Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536156.2| PREDICTED: similar to cytoplasmic FMR1 interact... 797 0.0
Alignment gi|XP_536455.2| PREDICTED: similar to p53 inducible protein [Ca... 790 0.0
>ref|XP_536156.2| PREDICTED: similar to cytoplasmic FMR1 interacting protein 1 [Canis
familiaris].
Length = 1212
Score = 797 bits (2059), Expect = 0.0
Identities = 394/439 (89%), Positives = 397/439 (90%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR
Sbjct: 815 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR----------- 863
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
YRN VGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 864 ------------------------------YRNLVGPPHFQVICRLLGYQGIAVVMEELL 893
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 894 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 953
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY
Sbjct: 954 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 1013
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP
Sbjct: 1014 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 1073
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 1074 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1133
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIIT+LDKYLKSGDGEST
Sbjct: 1134 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITVLDKYLKSGDGEST 1193
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1194 PVEHVRCFQPPIHQSLASS 1212
>ref|XP_536455.2| PREDICTED: similar to p53 inducible protein [Canis familiaris].
Length = 1288
Score = 790 bits (2040), Expect = 0.0
Identities = 372/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 849 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 908
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 909 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 968
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 969 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 1028
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 1029 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1088
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P
Sbjct: 1089 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1148
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1149 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1208
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDE+IKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1209 DLFDFCYHLLKVQRQDGKDEVIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1268
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1269 TVEHVRCFQPPIHQSLATT 1287
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,226,518
Number of extensions: 1835610
Number of successful extensions: 5815
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5799
Number of HSP's successfully gapped: 3
Length of query: 661
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 552
Effective length of database: 15,240,880
Effective search space: 8412965760
Effective search space used: 8412965760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014312
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192444.1| cytoplasmic FMR1 interacting protein 1 [Bos ... 899 0.0
Alignment gi|XP_002685240.1| PREDICTED: cytoplasmic FMR1 interacting prot... 899 0.0
Alignment gi|NP_001192779.1| cytoplasmic FMR1-interacting protein 2 [Bos ... 790 0.0
Alignment gi|XP_002689386.1| PREDICTED: specifically Rac1-associated prot... 790 0.0
>ref|NP_001192444.1| cytoplasmic FMR1 interacting protein 1 [Bos taurus].
Length = 1253
Score = 899 bits (2324), Expect = 0.0
Identities = 437/439 (99%), Positives = 437/439 (99%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 815 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 874
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 875 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 934
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 935 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 994
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY
Sbjct: 995 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 1054
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDD IWRGPLP
Sbjct: 1055 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDSIWRGPLP 1114
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMII LLGQQRRF
Sbjct: 1115 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIALLGQQRRF 1174
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST
Sbjct: 1175 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1234
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1235 PVEHVRCFQPPIHQSLASS 1253
>ref|XP_002685240.1| PREDICTED: cytoplasmic FMR1 interacting protein 1 [Bos taurus].
Length = 1253
Score = 899 bits (2324), Expect = 0.0
Identities = 437/439 (99%), Positives = 437/439 (99%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 815 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 874
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 875 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 934
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 935 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 994
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY
Sbjct: 995 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 1054
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDD IWRGPLP
Sbjct: 1055 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDSIWRGPLP 1114
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMII LLGQQRRF
Sbjct: 1115 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIALLGQQRRF 1174
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST
Sbjct: 1175 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1234
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1235 PVEHVRCFQPPIHQSLASS 1253
>ref|NP_001192779.1| cytoplasmic FMR1-interacting protein 2 [Bos taurus].
Length = 1253
Score = 790 bits (2040), Expect = 0.0
Identities = 372/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 814 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 873
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 874 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 933
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 934 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 993
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 994 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1053
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DP+WRGP P
Sbjct: 1054 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPVWRGPPP 1113
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1114 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1173
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1174 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1233
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1234 TVEHVRCFQPPIHQSLATT 1252
>ref|XP_002689386.1| PREDICTED: specifically Rac1-associated protein 1-like [Bos taurus].
Length = 1191
Score = 790 bits (2040), Expect = 0.0
Identities = 372/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 752 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 811
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 812 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 871
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 872 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 931
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 932 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 991
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DP+WRGP P
Sbjct: 992 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPVWRGPPP 1051
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1052 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1111
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1112 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1171
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1172 TVEHVRCFQPPIHQSLATT 1190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,193,492
Number of extensions: 1784274
Number of successful extensions: 5851
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5833
Number of HSP's successfully gapped: 4
Length of query: 661
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,074,782
Effective search space: 7769279664
Effective search space used: 7769279664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134162.2| PREDICTED: cytoplasmic FMR1-interacting prot... 427 e-119
>ref|XP_003134162.2| PREDICTED: cytoplasmic FMR1-interacting protein 2-like [Sus scrofa].
Length = 786
Score = 427 bits (1098), Expect = e-119
Identities = 200/239 (83%), Positives = 224/239 (93%)
Frame = +3
Query: 606 SLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAI 785
S EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KYAPLHLVPLIERLGTPQQIAI
Sbjct: 547 SQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAI 606
Query: 786 AREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLPSNGVMHVDDCVEFHRLWSAM 965
AREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P+NGVMHVD+CVEFHRLWSAM
Sbjct: 607 AREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAM 666
Query: 966 QFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDE 1145
QFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF + DFCYHLLKVQ+ DGKDE
Sbjct: 667 QFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDE 726
Query: 1146 IIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGESTPVEHVRCFQPPIHQSLASS 1322
IIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+ VEHVRCFQPPIHQSLA++
Sbjct: 727 IIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATT 785
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,102,781
Number of extensions: 1139420
Number of successful extensions: 3763
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3753
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 556
Effective length of database: 8,729,747
Effective search space: 4853739332
Effective search space used: 4853739332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158134.1| cytoplasmic FMR1-interacting protein 1 isofo... 900 0.0
Alignment gi|NP_001158133.1| cytoplasmic FMR1-interacting protein 1 isofo... 900 0.0
Alignment gi|NP_035500.2| cytoplasmic FMR1-interacting protein 1 isoform ... 900 0.0
Alignment gi|NP_598530.2| cytoplasmic FMR1-interacting protein 2 [Mus mus... 790 0.0
>ref|NP_001158134.1| cytoplasmic FMR1-interacting protein 1 isoform b [Mus musculus].
Length = 1251
Score = 900 bits (2327), Expect = 0.0
Identities = 435/439 (99%), Positives = 439/439 (100%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 813 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 872
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 873 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 932
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 933 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 992
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPR+HVKEGER+DAKMKRLESKY
Sbjct: 993 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKY 1052
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP
Sbjct: 1053 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 1112
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 1113 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1172
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST
Sbjct: 1173 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1232
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1233 PVEHVRCFQPPIHQSLASS 1251
>ref|NP_001158133.1| cytoplasmic FMR1-interacting protein 1 isoform a [Mus musculus].
Length = 1253
Score = 900 bits (2327), Expect = 0.0
Identities = 435/439 (99%), Positives = 439/439 (100%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 815 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 874
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 875 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 934
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 935 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 994
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPR+HVKEGER+DAKMKRLESKY
Sbjct: 995 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKY 1054
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP
Sbjct: 1055 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 1114
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 1115 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1174
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST
Sbjct: 1175 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1234
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1235 PVEHVRCFQPPIHQSLASS 1253
>ref|NP_035500.2| cytoplasmic FMR1-interacting protein 1 isoform a [Mus musculus].
Length = 1253
Score = 900 bits (2327), Expect = 0.0
Identities = 435/439 (99%), Positives = 439/439 (100%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 815 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 874
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 875 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 934
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 935 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 994
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPR+HVKEGER+DAKMKRLESKY
Sbjct: 995 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKY 1054
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP
Sbjct: 1055 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 1114
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 1115 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1174
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST
Sbjct: 1175 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1234
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1235 PVEHVRCFQPPIHQSLASS 1253
>ref|NP_598530.2| cytoplasmic FMR1-interacting protein 2 [Mus musculus].
Length = 1253
Score = 790 bits (2041), Expect = 0.0
Identities = 373/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 814 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 873
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 874 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 933
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 934 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 993
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 994 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1053
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P
Sbjct: 1054 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1113
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1114 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1173
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1174 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1233
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1234 TVEHVRCFQPPIHQSLATT 1252
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,560,321
Number of extensions: 1550954
Number of successful extensions: 4941
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4930
Number of HSP's successfully gapped: 4
Length of query: 661
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 553
Effective length of database: 12,373,671
Effective search space: 6842640063
Effective search space used: 6842640063
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055423.1| cytoplasmic FMR1-interacting protein 1 isoform ... 897 0.0
Alignment gi|NP_001028200.1| cytoplasmic FMR1-interacting protein 1 isofo... 897 0.0
Alignment gi|NP_001032409.2| cytoplasmic FMR1-interacting protein 2 [Homo... 790 0.0
Alignment gi|NP_001032410.1| cytoplasmic FMR1-interacting protein 2 [Homo... 790 0.0
Alignment gi|NP_055191.2| cytoplasmic FMR1-interacting protein 2 [Homo sa... 790 0.0
>ref|NP_055423.1| cytoplasmic FMR1-interacting protein 1 isoform a [Homo sapiens].
Length = 1253
Score = 897 bits (2318), Expect = 0.0
Identities = 433/439 (98%), Positives = 437/439 (99%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLD FDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 815 YLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 874
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 875 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 934
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 935 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 994
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNA+LFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY
Sbjct: 995 QNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 1054
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR+FLDDPIWRGPLP
Sbjct: 1055 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSFLDDPIWRGPLP 1114
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 1115 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1174
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGE T
Sbjct: 1175 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEGT 1234
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 1235 PVEHVRCFQPPIHQSLASS 1253
>ref|NP_001028200.1| cytoplasmic FMR1-interacting protein 1 isoform b [Homo sapiens].
Length = 822
Score = 897 bits (2318), Expect = 0.0
Identities = 433/439 (98%), Positives = 437/439 (99%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
YLTLD FDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE
Sbjct: 384 YLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 443
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL
Sbjct: 444 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 503
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
KVVKSLLQGTILQYVKTLMEVMPK+CRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF
Sbjct: 504 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 563
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
QNLREVGNA+LFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY
Sbjct: 564 QNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 623
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR+FLDDPIWRGPLP
Sbjct: 624 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSFLDDPIWRGPLP 683
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
SNGVMHVD+CVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF
Sbjct: 684 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 743
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGE T
Sbjct: 744 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEGT 803
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
PVEHVRCFQPPIHQSLASS
Sbjct: 804 PVEHVRCFQPPIHQSLASS 822
>ref|NP_001032409.2| cytoplasmic FMR1-interacting protein 2 [Homo sapiens].
Length = 1253
Score = 790 bits (2041), Expect = 0.0
Identities = 373/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 814 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 873
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 874 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 933
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 934 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 993
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 994 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1053
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P
Sbjct: 1054 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1113
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1114 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1173
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1174 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1233
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1234 TVEHVRCFQPPIHQSLATT 1252
>ref|NP_001032410.1| cytoplasmic FMR1-interacting protein 2 [Homo sapiens].
Length = 1253
Score = 790 bits (2041), Expect = 0.0
Identities = 373/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 814 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 873
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 874 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 933
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 934 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 993
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 994 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1053
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P
Sbjct: 1054 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1113
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1114 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1173
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1174 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1233
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1234 TVEHVRCFQPPIHQSLATT 1252
>ref|NP_055191.2| cytoplasmic FMR1-interacting protein 2 [Homo sapiens].
Length = 1253
Score = 790 bits (2041), Expect = 0.0
Identities = 373/439 (84%), Positives = 412/439 (93%)
Frame = +3
Query: 6 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 185
++TLDSFDAMFREANHNVSAPYGRITLHVFWELN+DFLPNYCYNGSTNRFVRT +PF+QE
Sbjct: 814 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE 873
Query: 186 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 365
QRDK N QP YL+GSK LN+AYS IY SYRNFVGPPHF+ ICRLLGYQGIAVVMEELL
Sbjct: 874 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL 933
Query: 366 KVVKSLLQGTILQYVKTLMEVMPKVCRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 545
K+VKSLLQGTILQYVKTL+EVMPK+CRLPRHEYGSPGILEFFHHQLKDI+EYAELKT F
Sbjct: 934 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF 993
Query: 546 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKY 725
Q+LREVGNA+LFCLLIEQ+LS EEVCDLLHAAPFQNILPRV++KEGERL+ +MKRLE+KY
Sbjct: 994 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY 1053
Query: 726 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 905
APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIR++L DPIWRGP P
Sbjct: 1054 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP 1113
Query: 906 SNGVMHVDDCVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1085
+NGVMHVD+CVEFHRLWSAMQFVYCIPVGT+EFT EQCFGDGL+WAGC IIVLLGQQRRF
Sbjct: 1114 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF 1173
Query: 1086 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1265
+ DFCYHLLKVQ+ DGKDEIIKNVPLKKM +RIRK+QILN+E+ IL+KY+KS + +S+
Sbjct: 1174 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS 1233
Query: 1266 PVEHVRCFQPPIHQSLASS 1322
VEHVRCFQPPIHQSLA++
Sbjct: 1234 TVEHVRCFQPPIHQSLATT 1252
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,058,920
Number of extensions: 1822627
Number of successful extensions: 5732
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5724
Number of HSP's successfully gapped: 5
Length of query: 661
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 552
Effective length of database: 14,704,088
Effective search space: 8116656576
Effective search space used: 8116656576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014312
(1983 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896160.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 242 6e-61
gb|GL894435.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 192 5e-46
Sscrofa_Chr16 167 3e-38
Sscrofa_ChrX 113 4e-22
>gb|GL896160.1| Sus scrofa unplaced genomic scaffold chrU_scaffold528
Length = 662
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 771 cagcaaattgcaatagcgagagagggggacctgctgacaaaggagcgtctctgctgtggc 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagcaaattgcaatagcgagagagggggacctgctgacaaaggagcgtctctgctgtggc 600
Query: 831 ctgtccatgtttgaagtcatcctgactcggatccggacctttctggatgaccccatctgg 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgtccatgtttgaagtcatcctgactcggatccggacctttctggatgaccccatctgg 660
Query: 891 cg 892
||
Sbjct: 661 cg 662
>gb|GL894435.1| Sus scrofa unplaced genomic scaffold chrU_scaffold310
Length = 475
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 677 agagggagagagacttgatgccaaaatgaaaagactagaatcaaagtacgccccacttca 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agagggagagagacttgatgccaaaatgaaaagactagaatcaaagtacgccccacttca 392
Query: 737 tcttgtccctctgattgaaagactgggaacccctcag 773
|||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcttgtccctctgattgaaagactgggaacccctcag 355
>Sscrofa_Chr16
|| Length = 86898991
Score = 167 bits (84), Expect = 3e-38
Identities = 180/212 (84%)
Strand = Plus / Minus
Query: 792 gagggggacctgctgacaaaggagcgtctctgctgtggcctgtccatgtttgaagtcatc 851
||||| ||||||||||| |||||||| || ||||| || ||||||||||| || ||||||
Sbjct: 71714941 gagggcgacctgctgaccaaggagcggctgtgctgcgggctgtccatgttcgaggtcatc 71714882
Query: 852 ctgactcggatccggacctttctggatgaccccatctggcgcgggcctctgcccagcaac 911
||||| || ||||||| || ||| | |||||||||||||| || || | ||||| ||||
Sbjct: 71714881 ctgacccgcatccggagctacctgcaggaccccatctggcggggcccgccgcccaccaac 71714822
Query: 912 ggggtcatgcacgtggatgactgcgtcgagtttcacaggctgtggagcgccatgcagttt 971
|| ||||||||||| || || || || ||||| ||| |||| ||||||||||||||||||
Sbjct: 71714821 ggcgtcatgcacgtcgacgagtgtgtggagttccaccggctctggagcgccatgcagttt 71714762
Query: 972 gtctactgcattcccgtggggacacatgagtt 1003
||||||||||| ||||||||||| |||||||
Sbjct: 71714761 gtctactgcatccccgtggggaccaatgagtt 71714730
Score = 149 bits (75), Expect = 7e-33
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 10 tgactctggacagcttcgatgccatgttccgggaggccaaccacaacgtgtcggcaccct 69
||||||||||||| || || |||||||||||||||||||| ||||| ||||| || ||||
Sbjct: 71770185 tgactctggacagttttgacgccatgttccgggaggccaatcacaatgtgtccgccccct 71770126
Query: 70 atgggaggatcactctccacgtcttctgggagctcaactacgacttcctgcccaactact 129
|||| | ||||| || ||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 71770125 atggccgcatcaccctgcacgtcttctgggagctgaacttcgacttcctccccaactact 71770066
Query: 130 gctacaatggctccaccaa 148
|||||||||| ||||||||
Sbjct: 71770065 gctacaatgggtccaccaa 71770047
Score = 131 bits (66), Expect = 2e-27
Identities = 108/122 (88%)
Strand = Plus / Minus
Query: 477 atcctggagttcttccaccaccagctgaaggacatcgtggagtacgcggagctgaagacc 536
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| || |||
Sbjct: 71750164 atcctggagttcttccaccaccagctgaaggacatcatcgagtacgcagagctcaaaacc 71750105
Query: 537 gtgtgcttccagaacctgcgggaggtgggcaatgccgtcctcttctgcctgctcatcgag 596
| |||||||| |||||||||||||||||| ||| |||| ||||||||||| ||||||
Sbjct: 71750104 gacgtcttccagagcctgcgggaggtgggcaacgccatcctgttctgcctgctgatcgag 71750045
Query: 597 ca 598
||
Sbjct: 71750044 ca 71750043
Score = 75.8 bits (38), Expect = 8e-11
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 387 caaggcaccatcctgcagtacgtgaagacgctgatggaggtgatgcccaaggtctgccgg 446
||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||| | |||||
Sbjct: 71751055 caagggaccattctccagtatgtgaaaacgctgatcgaggtcatgcccaagatatgccgc 71750996
Query: 447 ctgccgcggcacgagtacggctcccc 472
||||| ||||| ||||||||||||||
Sbjct: 71750995 ctgccccggcatgagtacggctcccc 71750970
>Sscrofa_ChrX
|| Length = 144288218
Score = 113 bits (57), Expect = 4e-22
Identities = 104/119 (87%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 1479 aaagcttaattttataaaattgacttatttttctagactaaaattgtatatgcttttggt 1538
|||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||
Sbjct: 46046485 aaagcttaattttataaaatggatttctttttctagactaaaattgtatatgctttcggc 46046544
Query: 1539 aattggaaagtctgagaacattgg---ctggttgctgacatcatgttcttacaaaatta 1594
| ||||||| |||||||| ||||| || ||| || |||||||||||||||||||||
Sbjct: 46046545 acttggaaactctgagaatattggtagctaattgttgccatcatgttcttacaaaatta 46046603
Score = 87.7 bits (44), Expect = 2e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1095 gatttttgctatcatctcctcaaagtccagaaacatgatggcaaagatgaaattatcaaa 1154
||||| ||||||||||| | ||||||||||||||||||||||||||||| | ||||||
Sbjct: 46045636 gatttctgctatcatctgcctaaagtccagaaacatgatggcaaagatgaggtgatcaaa 46045695
Query: 1155 aatgtgcctttg 1166
||||||||||||
Sbjct: 46045696 aatgtgcctttg 46045707
Score = 83.8 bits (42), Expect = 3e-13
Identities = 98/117 (83%), Gaps = 6/117 (5%)
Strand = Plus / Plus
Query: 1153 aaaatgtgcctttgaagaagatggtggagagaatt------cggaagttccagattctca 1206
|||| |||||||||||||||||||||||||||||| | || ||||||||||| |
Sbjct: 46045969 aaaaagtgcctttgaagaagatggtggagagaatttcagttcacaatttccagattctaa 46046028
Query: 1207 atgatgagataatcactatcttggacaagtacttgaagtcaggcgacggagagagca 1263
|||||||| | ||||||||||||||| || ||||||||| || || ||||||||||
Sbjct: 46046029 atgatgagctcatcactatcttggacgagcacttgaagttgggtgatggagagagca 46046085
Score = 63.9 bits (32), Expect = 3e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 1897 aatccagttgtgacgaaatctaatttgtgaggtatgatttaaaggtta 1944
|||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct: 46046927 aatccagttgtgacaaaattcaatttgtgaggtatgatttcaaggtta 46046974
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,508,261
Number of extensions: 449
Number of successful extensions: 449
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 11
Length of query: 1983
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1961
Effective length of database: 2,808,408,574
Effective search space: 5507289213614
Effective search space used: 5507289213614
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)