Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533782.2| PREDICTED: similar to F53H1.3 [Canis familiaris]. 450 e-126
Alignment gi|XP_538313.2| PREDICTED: similar to CG3309-PA [Canis familiar... 283 2e-76
>ref|XP_533782.2| PREDICTED: similar to F53H1.3 [Canis familiaris].
Length = 592
Score = 450 bits (1157), Expect = e-126
Identities = 209/219 (95%), Positives = 215/219 (98%)
Frame = +1
Query: 247 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 426
WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF
Sbjct: 39 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 98
Query: 427 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 606
CFRFRQSSGRRVSLHCLLD +DKDLPVYLKKDPAYFYGYVYFRQVRDK+LKRGYFQKSLV
Sbjct: 99 CFRFRQSSGRRVSLHCLLDHYDKDLPVYLKKDPAYFYGYVYFRQVRDKSLKRGYFQKSLV 158
Query: 607 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKV 786
LISKLPYIHFFHTVLKQIAPEYFEK+EPYLEAACNDVD+WPAPVPGKTLHLPIMG+VMKV
Sbjct: 159 LISKLPYIHFFHTVLKQIAPEYFEKSEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKV 218
Query: 787 RIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
RIPTCHDKPGTTQ+ Q TQQ DTHISVILPTVHEVDLFR
Sbjct: 219 RIPTCHDKPGTTQIAQLTQQADTHISVILPTVHEVDLFR 257
>ref|XP_538313.2| PREDICTED: similar to CG3309-PA [Canis familiaris].
Length = 630
Score = 283 bits (725), Expect = 2e-76
Identities = 129/219 (58%), Positives = 170/219 (77%)
Frame = +1
Query: 247 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 426
W FSAWL CVCVV FDLELGQA+E++YP +LTDKEK++ICYLSFPDS+SGCLGDTQF
Sbjct: 80 WARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLSFPDSHSGCLGDTQF 139
Query: 427 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 606
FR RQ G+R H ++D PV L+++PA+++GYVYFRQV+D ++KRGYFQKSLV
Sbjct: 140 SFRIRQCGGQRSPWHAEDRRYDSGAPVSLQREPAHYFGYVYFRQVKDSSVKRGYFQKSLV 199
Query: 607 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKV 786
L+S+LP++ F +L IAPEYF+K P LEA CN++DQWPAPVPG+TL+LP+MG+V++V
Sbjct: 200 LVSRLPFVRLFQALLSLIAPEYFDKLAPCLEAVCNEIDQWPAPVPGQTLNLPVMGVVLQV 259
Query: 787 RIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
R+P+ DKP + Q + + V+L +VHE+DLFR
Sbjct: 260 RVPSRMDKPEHSPPKQCSHENLLPAPVVLTSVHELDLFR 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,003,044
Number of extensions: 804625
Number of successful extensions: 1965
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1965
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 254
Effective length of database: 15,407,560
Effective search space: 3913520240
Effective search space used: 3913520240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014324
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697043.1| PREDICTED: hypothetical protein [Bos taurus]. 489 e-138
Alignment gi|XP_617839.4| PREDICTED: hypothetical protein [Bos taurus]. 400 e-111
Alignment gi|XP_002688049.1| PREDICTED: family with sequence similarity 1... 274 1e-73
Alignment gi|XP_001788190.2| PREDICTED: family with sequence similarity 1... 257 1e-68
>ref|XP_002697043.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 608
Score = 489 bits (1259), Expect = e-138
Identities = 233/263 (88%), Positives = 240/263 (91%)
Frame = +1
Query: 115 PGSRGPADEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGF 294
PGSRGP DEAVA D+EREA A+V AGA WDGFSAWLHCVCVVGF
Sbjct: 11 PGSRGPLDEAVAADKEREAPAVVVAGATPEDDEEDEGRSRGLLRWDGFSAWLHCVCVVGF 70
Query: 295 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 474
DLELGQAVEVIYPQHS+LTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC
Sbjct: 71 DLELGQAVEVIYPQHSRLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 130
Query: 475 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 654
LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK
Sbjct: 131 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 190
Query: 655 QIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQ 834
QIAPEYFEKNEPYLEAACNDVD+WPAPVPGKTL+LPIMG+VMKVRIPTCHDKPGTTQ+VQ
Sbjct: 191 QIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLYLPIMGVVMKVRIPTCHDKPGTTQIVQ 250
Query: 835 STQQGDTHISVILPTVHEVDLFR 903
TQQGD HISVILPTVHEVDLFR
Sbjct: 251 LTQQGDAHISVILPTVHEVDLFR 273
>ref|XP_617839.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 583
Score = 400 bits (1027), Expect = e-111
Identities = 187/195 (95%), Positives = 193/195 (98%)
Frame = +1
Query: 319 EVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKD 498
+VIYPQHS+LTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKD
Sbjct: 70 QVIYPQHSRLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKD 129
Query: 499 LPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFE 678
LPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFE
Sbjct: 130 LPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFE 189
Query: 679 KNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQSTQQGDTH 858
KNEPYLEAACNDVD+WPAPVPGKTL+LPIMG+VMKVRIPTCHDKPGTTQ+VQ TQQGD H
Sbjct: 190 KNEPYLEAACNDVDRWPAPVPGKTLYLPIMGVVMKVRIPTCHDKPGTTQIVQLTQQGDAH 249
Query: 859 ISVILPTVHEVDLFR 903
ISVILPTVHEVDLFR
Sbjct: 250 ISVILPTVHEVDLFR 264
>ref|XP_002688049.1| PREDICTED: family with sequence similarity 116, member B-like [Bos
taurus].
Length = 582
Score = 274 bits (700), Expect = 1e-73
Identities = 126/219 (57%), Positives = 165/219 (75%)
Frame = +1
Query: 247 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 426
W FSAWL CVCVV FDLELGQA+E++YP +LTDKEK++ICYLSFPDS+SGCLGDTQF
Sbjct: 32 WARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQF 91
Query: 427 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 606
FR RQ G+R H D+ P L+++PA+++GYVYFRQV+D ++KRGYFQKSLV
Sbjct: 92 SFRIRQCGGQRCPGHAGEKPGDRGAPASLQREPAHYFGYVYFRQVKDSSVKRGYFQKSLV 151
Query: 607 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKV 786
L+S+LP++ F +L +APE+F+K P LEA CN++DQWPAP PG+TL LP+MG+V++V
Sbjct: 152 LLSRLPFVRLFQALLGLVAPEFFDKLAPCLEAVCNEIDQWPAPAPGRTLSLPVMGVVLQV 211
Query: 787 RIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
IP+ D P + L S + V+LP+VHE+DLFR
Sbjct: 212 HIPSRADTPESGPLEPSGHETLLPAPVVLPSVHELDLFR 250
>ref|XP_001788190.2| PREDICTED: family with sequence similarity 116, member B [Bos
taurus].
Length = 516
Score = 257 bits (657), Expect = 1e-68
Identities = 122/219 (55%), Positives = 157/219 (71%)
Frame = +1
Query: 247 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 426
W FSAWL CVCVV FDLELGQA+E++YP +LTDKEK++ICYLSFPDS+SGCLGDTQF
Sbjct: 32 WARFSAWLECVCVVTFDLELGQALELVYPSDFQLTDKEKSSICYLSFPDSHSGCLGDTQF 91
Query: 427 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 606
FR RQ G+R H D+ P L+++PA+++GYVYFRQV+D ++KRGYFQKSLV
Sbjct: 92 SFRIRQCGGQRCPGHAGEKPGDRGAPASLQREPAHYFGYVYFRQVKDSSVKRGYFQKSLV 151
Query: 607 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKV 786
L+S+LP++ F +L +APE+F+K P LEA CN++DQWPAP PG+TL LP+MG+V V
Sbjct: 152 LLSRLPFVRLFQALLGLVAPEFFDKLAPCLEAVCNEIDQWPAPAPGRTLSLPVMGVVXXV 211
Query: 787 RIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
+ L Q V+LP+VHE+DLFR
Sbjct: 212 ----LWGSSLSLSLAPHPSQTLLPAPVVLPSVHELDLFR 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,643,760
Number of extensions: 787463
Number of successful extensions: 1796
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 255
Effective length of database: 14,273,310
Effective search space: 3639694050
Effective search space used: 3639694050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926568.2| PREDICTED: protein FAM116A [Sus scrofa]. 372 e-103
>ref|XP_001926568.2| PREDICTED: protein FAM116A [Sus scrofa].
Length = 719
Score = 372 bits (955), Expect = e-103
Identities = 176/177 (99%), Positives = 176/177 (99%)
Frame = +1
Query: 373 CYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYF 552
CYLS PDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYF
Sbjct: 208 CYLSSPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYF 267
Query: 553 RQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPA 732
RQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPA
Sbjct: 268 RQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPA 327
Query: 733 PVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
PVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR
Sbjct: 328 PVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 384
Score = 109 bits (273), Expect = 2e-24
Identities = 55/70 (78%), Positives = 55/70 (78%)
Frame = +1
Query: 115 PGSRGPADEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGF 294
PGSRGPADEAVATDEEREASALVAAGAVS WDGFSAWLHCVCVVGF
Sbjct: 11 PGSRGPADEAVATDEEREASALVAAGAVSEEDEEDEGRGRGLLRWDGFSAWLHCVCVVGF 70
Query: 295 DLELGQAVEV 324
DLELGQAVEV
Sbjct: 71 DLELGQAVEV 80
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,597,226
Number of extensions: 500259
Number of successful extensions: 1152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1152
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,854,232
Effective search space: 2284391856
Effective search space used: 2284391856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127937.1| hypothetical protein LOC211922 isoform a [Mu... 472 e-133
Alignment gi|NP_666081.1| hypothetical protein LOC211922 isoform b [Mus m... 472 e-133
Alignment gi|NP_081357.2| hypothetical protein LOC69440 [Mus musculus]. 273 2e-73
>ref|NP_001127937.1| hypothetical protein LOC211922 isoform a [Mus musculus].
Length = 605
Score = 472 bits (1215), Expect = e-133
Identities = 230/263 (87%), Positives = 237/263 (90%)
Frame = +1
Query: 115 PGSRGPADEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGF 294
PGSRG DEA A E REA+AL AAG V+ WDGFSAWLHCVCVVGF
Sbjct: 11 PGSRGSLDEAGA--EGREAAALAAAG-VALEDEEEDDGRRGLLRWDGFSAWLHCVCVVGF 67
Query: 295 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 474
DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC
Sbjct: 68 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 127
Query: 475 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 654
LLD+FDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK
Sbjct: 128 LLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 187
Query: 655 QIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQ 834
QIAPEYFEKNEPYLEAACNDVD+WPAPVPGKTLHLPIMG+VMKVRIPTCHDKPGTTQ+VQ
Sbjct: 188 QIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQMVQ 247
Query: 835 STQQGDTHISVILPTVHEVDLFR 903
TQQ DTH S+ILPTVHEVDLFR
Sbjct: 248 LTQQADTHTSIILPTVHEVDLFR 270
>ref|NP_666081.1| hypothetical protein LOC211922 isoform b [Mus musculus].
Length = 559
Score = 472 bits (1215), Expect = e-133
Identities = 230/263 (87%), Positives = 237/263 (90%)
Frame = +1
Query: 115 PGSRGPADEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGF 294
PGSRG DEA A E REA+AL AAG V+ WDGFSAWLHCVCVVGF
Sbjct: 11 PGSRGSLDEAGA--EGREAAALAAAG-VALEDEEEDDGRRGLLRWDGFSAWLHCVCVVGF 67
Query: 295 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 474
DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC
Sbjct: 68 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 127
Query: 475 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 654
LLD+FDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK
Sbjct: 128 LLDEFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 187
Query: 655 QIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQ 834
QIAPEYFEKNEPYLEAACNDVD+WPAPVPGKTLHLPIMG+VMKVRIPTCHDKPGTTQ+VQ
Sbjct: 188 QIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGLVMKVRIPTCHDKPGTTQMVQ 247
Query: 835 STQQGDTHISVILPTVHEVDLFR 903
TQQ DTH S+ILPTVHEVDLFR
Sbjct: 248 LTQQADTHTSIILPTVHEVDLFR 270
>ref|NP_081357.2| hypothetical protein LOC69440 [Mus musculus].
Length = 585
Score = 273 bits (698), Expect = 2e-73
Identities = 128/219 (58%), Positives = 168/219 (76%)
Frame = +1
Query: 247 WDGFSAWLHCVCVVGFDLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQF 426
W FSAWL CVCVV FDLELGQA+E++YP +LTDKEK++ICYL+FPDS+SGCLGDTQF
Sbjct: 35 WARFSAWLECVCVVTFDLELGQALELVYPSDFRLTDKEKSSICYLAFPDSHSGCLGDTQF 94
Query: 427 CFRFRQSSGRRVSLHCLLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLV 606
FR RQ G+R ++ P+ L+++PA++ GYVYFRQV+D ++KRGYFQKSLV
Sbjct: 95 SFRMRQCGGQRSLWQVDDRSYNNKAPLALQREPAHYLGYVYFRQVKDSSVKRGYFQKSLV 154
Query: 607 LISKLPYIHFFHTVLKQIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKV 786
L+S+LP++ F ++L IAPEYFEK P LEA CN++DQWPAPVPG+TL+LPIMG+V++V
Sbjct: 155 LVSRLPFVRLFQSLLSLIAPEYFEKLAPCLEAVCNEIDQWPAPVPGQTLNLPIMGVVIQV 214
Query: 787 RIPTCHDKPGTTQLVQSTQQGDTHISVILPTVHEVDLFR 903
RIP+ DK ++ Q Q+ V+L +VHE+DLFR
Sbjct: 215 RIPSRVDKLESSPPKQCDQENLLPAPVVLTSVHELDLFR 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,386,285
Number of extensions: 685461
Number of successful extensions: 1598
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1592
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 255
Effective length of database: 12,523,851
Effective search space: 3193582005
Effective search space used: 3193582005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689891.1| hypothetical protein LOC201627 [Homo sapiens]. 477 e-135
Alignment gi|NP_001001794.3| family with sequence similarity 116, member ... 276 2e-74
>ref|NP_689891.1| hypothetical protein LOC201627 [Homo sapiens].
Length = 608
Score = 477 bits (1228), Expect = e-135
Identities = 230/263 (87%), Positives = 236/263 (89%)
Frame = +1
Query: 115 PGSRGPADEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGF 294
PGSR P DEAVA E REA ALVAAG WD FSAWLHCVCVVGF
Sbjct: 11 PGSRRPLDEAVAGAEGREAPALVAAGGAPEDDEEDDGRGRGLLRWDSFSAWLHCVCVVGF 70
Query: 295 DLELGQAVEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 474
DLELGQAVEVIYPQHSKLTD+EKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC
Sbjct: 71 DLELGQAVEVIYPQHSKLTDREKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHC 130
Query: 475 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 654
LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK
Sbjct: 131 LLDQFDKDLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLK 190
Query: 655 QIAPEYFEKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQ 834
QIAPEYFEKNEPYLEAACNDVD+WPAPVPGKTLHLPIMG+VMKVRIPTCHDKPGTTQ+VQ
Sbjct: 191 QIAPEYFEKNEPYLEAACNDVDRWPAPVPGKTLHLPIMGVVMKVRIPTCHDKPGTTQIVQ 250
Query: 835 STQQGDTHISVILPTVHEVDLFR 903
TQQ DT+ISVILPTVHEVD+FR
Sbjct: 251 LTQQVDTNISVILPTVHEVDIFR 273
>ref|NP_001001794.3| family with sequence similarity 116, member B [Homo sapiens].
Length = 585
Score = 276 bits (707), Expect = 2e-74
Identities = 135/256 (52%), Positives = 177/256 (69%)
Frame = +1
Query: 136 DEAVATDEEREASALVAAGAVSXXXXXXXXXXXXXXXWDGFSAWLHCVCVVGFDLELGQA 315
D + T R L AAG S W FSAWL CVCVV FDLELGQA
Sbjct: 2 DALLGTGPRRARGCLGAAGPTSSGRAARTPAAP----WARFSAWLECVCVVTFDLELGQA 57
Query: 316 VEVIYPQHSKLTDKEKTNICYLSFPDSNSGCLGDTQFCFRFRQSSGRRVSLHCLLDQFDK 495
+E++YP +LTDKEK++ICYLSFPDS+SGCLGDTQF FR RQ G+R H ++
Sbjct: 58 LELVYPNDFRLTDKEKSSICYLSFPDSHSGCLGDTQFSFRMRQCGGQRSPWHADDRHYNS 117
Query: 496 DLPVYLKKDPAYFYGYVYFRQVRDKTLKRGYFQKSLVLISKLPYIHFFHTVLKQIAPEYF 675
PV L+++PA+++GYVYFRQV+D ++KRGYFQKSLVL+S+LP++ F +L IAPEYF
Sbjct: 118 RAPVALQREPAHYFGYVYFRQVKDSSVKRGYFQKSLVLVSRLPFVRLFQALLSLIAPEYF 177
Query: 676 EKNEPYLEAACNDVDQWPAPVPGKTLHLPIMGIVMKVRIPTCHDKPGTTQLVQSTQQGDT 855
+K P LEA C+++DQWPAP PG+TL+LP+MG+V++VRIP+ DK ++ Q Q+
Sbjct: 178 DKLAPCLEAVCSEIDQWPAPAPGQTLNLPVMGVVVQVRIPSRVDKSESSPPKQFDQENLL 237
Query: 856 HISVILPTVHEVDLFR 903
V+L +VHE+DLFR
Sbjct: 238 PAPVVLASVHELDLFR 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,402,814
Number of extensions: 798230
Number of successful extensions: 1976
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1975
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 254
Effective length of database: 14,868,908
Effective search space: 3776702632
Effective search space used: 3776702632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014324
(1076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 511 e-142
>Sscrofa_Chr13
|| Length = 218635234
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 66 aacagcaagggggaggcggatggctctgcggggcctggcaggctcggggcccggttcccg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43444284 aacagcaagggggaggcggatggctctgcggggcctggcaggctcggggcccggttcccg 43444225
Query: 126 cgggccggcggatgaggcggtggcgacggacgaggagcgcgaggcatctgccttggtggc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43444224 cgggccggcggatgaggcggtggcgacggacgaggagcgcgaggcatctgccttggtggc 43444165
Query: 186 ggcgggagctgtatcggaggaggatgaggaagacgagggccgcggccggggcctgctgcg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43444164 ggcgggagctgtatcggaggaggatgaggaagacgagggccgcggccggggcctgctgcg 43444105
Query: 246 ctgggacggcttctctgcctggctgcactgcgtgtgtgtggtgggcttcgacctggagct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43444104 ctgggacggcttctctgcctggctgcactgcgtgtgtgtggtgggcttcgacctggagct 43444045
Query: 306 gggccaagccgtagaggt 323
||||||||||||||||||
Sbjct: 43444044 gggccaagccgtagaggt 43444027
Score = 256 bits (129), Expect = 2e-65
Identities = 215/238 (90%), Gaps = 8/238 (3%)
Strand = Plus / Minus
Query: 845 agggagacacacatatatctgttattttacctactgttcatgaggtggatcttttcaggg 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43417835 agggagacacacatatatctgttattttacctactgttcatgaggtggatcttttcaggt 43417776
Query: 905 tnnnnnnnnntttgttatctgcctttttccttgtgatattgctgttaatttctttagaaa 964
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 43417775 aaagaaaaaatttgttatctgccttttcccttgtgatattgctgttaatttctttagaaa 43417716
Query: 965 atg-atgttcttatatgaaatgt-ggaaaaaatggaag-aaatcattattatgtt--aca 1019
||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct: 43417715 atgaatgttcttatatgaaatgtgggaaaaaatggaagaaaatcattattatgtttcaca 43417656
Query: 1020 tggtgtatagcagtggttcatcc-tgacggta-gtcatttgc-ttgactactanggaa 1074
|| |||||||||||||||||||| |||| ||| ||||||||| |||||||||| ||||
Sbjct: 43417655 tgttgtatagcagtggttcatccttgactgtatgtcatttgctttgactactagggaa 43417598
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 402 aggttgtcttggagatacccagttttgttttagatttcgacagtcttctgggaggagggt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43426132 aggttgtcttggagatacccagttttgttttagatttcgacagtcttctgggaggagggt 43426073
Query: 462 gtcactgcattgtctcctggatcaatttgacaaagatttaccagtttatttaaag 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43426072 gtcactgcattgtctcctggatcaatttgacaaagatttaccagtttatttaaag 43426018
Score = 214 bits (108), Expect = 7e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 596 agtccttggttttgatcagcaaactaccgtatattcattttttccacactgtgctcaaac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43421906 agtccttggttttgatcagcaaactaccgtatattcattttttccacactgtgctcaaac 43421847
Query: 656 agatagcaccagaatattttgaaaagaatgaaccatatttggaagcag 703
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43421846 agatagcaccagaatattttgaaaagaatgaaccatatttggaagcag 43421799
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 701 cagcttgtaatgatgttgatcaatggcctgccccagtgccagggaaaacattacacctgc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43420931 cagcttgtaatgatgttgatcaatggcctgccccagtgccagggaaaacattacacctgc 43420872
Query: 761 ctattatggggatagtaatgaaggta 786
||||||||||||||||||||||||||
Sbjct: 43420871 ctattatggggatagtaatgaaggta 43420846
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 515 agaaggatcctgcgtatttttatggatatgtgtatttccgacaagttcgagataaaactc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43423454 agaaggatcctgcgtatttttatggatatgtgtatttccgacaagttcgagataaaactc 43423395
Query: 575 ttaaaagaggctactttcagaag 597
|||||||||||||||||||||||
Sbjct: 43423394 ttaaaagaggctactttcagaag 43423372
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 782 aggtacggattcccacatgtcacgacaagcctgggacaactcaattagtgcagtcaactc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43419247 aggtacggattcccacatgtcacgacaagcctgggacaactcaattagtgcagtcaactc 43419188
Query: 842 agcagg 847
||||||
Sbjct: 43419187 agcagg 43419182
Score = 63.9 bits (32), Expect = 2e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 366 caatatttgctatttgtcttttccagattcaaattcaggt 405
||||| |||||||||||||| |||||||||||||||||||
Sbjct: 43431225 caatagttgctatttgtcttctccagattcaaattcaggt 43431186
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,636,302
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 9
Length of query: 1076
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1055
Effective length of database: 2,808,413,156
Effective search space: 2962875879580
Effective search space used: 2962875879580
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)