Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851276.1| PREDICTED: similar to radical S-adenosyl methio... 459 e-129
>ref|XP_851276.1| PREDICTED: similar to radical S-adenosyl methionine domain
containing 2 [Canis familiaris].
Length = 361
Score = 459 bits (1182), Expect = e-129
Identities = 229/298 (76%), Positives = 247/298 (82%)
Frame = +3
Query: 48 MWTLVPVTFALRLLSTFVQXXXXXXXXXXXXXXXXXAAFWRAGGDRSRQQLQGKTEAGEP 227
MW LVP+ FA +LLS F + A W AGG + + +G
Sbjct: 1 MWMLVPIAFAGKLLSAFQKPLSSLWSSLVPWFFWLRAVLWLAGGKSPQPRARGLLPESRV 60
Query: 228 PRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGMEK 407
A+E PT PTSVNYHFTRQCNYKCGFCFHTAKTSFVLPL EAKRGL LL+EAGMEK
Sbjct: 61 G-AKEGLDQPTIPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLAEAKRGLRLLQEAGMEK 119
Query: 408 INFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYLDILAIS 587
INFSGGEPFIHDRGEYLGKLVRFCKEEL LPSVSIVSNGSLIRERWF++YGEYLDILAIS
Sbjct: 120 INFSGGEPFIHDRGEYLGKLVRFCKEELGLPSVSIVSNGSLIRERWFQNYGEYLDILAIS 179
Query: 588 CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHIKA 767
CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDY+VAFKINSVINRFNV+EDM E IKA
Sbjct: 180 CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYRVAFKINSVINRFNVDEDMREQIKA 239
Query: 768 LNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQV 941
LNPVRWKVFQCLLIEGEN GEDALREA++FVISDEEFE FLDRHK+VSCLVPESN+++
Sbjct: 240 LNPVRWKVFQCLLIEGENSGEDALREAQRFVISDEEFEGFLDRHKEVSCLVPESNQKM 297
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,913,018
Number of extensions: 1331627
Number of successful extensions: 4278
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4275
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 391
Effective length of database: 15,307,552
Effective search space: 5985252832
Effective search space used: 5985252832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039406.1| radical S-adenosyl methionine domain-contain... 482 e-136
>ref|NP_001039406.1| radical S-adenosyl methionine domain-containing protein 2 [Bos
taurus].
Length = 363
Score = 482 bits (1240), Expect = e-136
Identities = 236/300 (78%), Positives = 260/300 (86%), Gaps = 2/300 (0%)
Frame = +3
Query: 48 MWTLVPVTFALRLLSTFVQXXXXXXXXXXXXXXXXXAAFWRAGGDRSRQQLQGKTEAGEP 227
MW LVP+ FAL+LL+ F+Q AA W AGG+RSR LQ + EAGEP
Sbjct: 1 MWMLVPIAFALKLLNVFLQPLGSVWSSLGPLFLQLRAASWLAGGERSRP-LQDRREAGEP 59
Query: 228 PRAQ--EDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGM 401
RA+ + LPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAK+GL +LKEAGM
Sbjct: 60 GRAEGEDGGDLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKKGLLMLKEAGM 119
Query: 402 EKINFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYLDILA 581
EKINFSGGEPF+ DRGEYLG+LV+FCK+ELQLPSVSIVSNGSLIRERWF+ YGEYLDILA
Sbjct: 120 EKINFSGGEPFLQDRGEYLGRLVKFCKQELQLPSVSIVSNGSLIRERWFQKYGEYLDILA 179
Query: 582 ISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHI 761
ISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWC++Y+VAFKINSVINRFNV+EDM E I
Sbjct: 180 ISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCKEYRVAFKINSVINRFNVDEDMKEQI 239
Query: 762 KALNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQV 941
ALNPVRWKVFQCL+IEGEN GEDALREAE+FVISDEEFE FLDRHKDVSCLVPESN+++
Sbjct: 240 TALNPVRWKVFQCLIIEGENSGEDALREAERFVISDEEFEAFLDRHKDVSCLVPESNQKM 299
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,438,750
Number of extensions: 1398760
Number of successful extensions: 4314
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4308
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 392
Effective length of database: 14,174,046
Effective search space: 5556226032
Effective search space used: 5556226032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998982.1| radical S-adenosyl methionine domain-containing... 570 e-163
Alignment gi|XP_003354984.1| PREDICTED: hypothetical protein LOC100623968... 375 e-104
>ref|NP_998982.1| radical S-adenosyl methionine domain-containing protein 2 [Sus
scrofa].
Length = 362
Score = 570 bits (1468), Expect = e-163
Identities = 279/298 (93%), Positives = 280/298 (93%)
Frame = +3
Query: 48 MWTLVPVTFALRLLSTFVQXXXXXXXXXXXXXXXXXAAFWRAGGDRSRQQLQGKTEAGEP 227
MWTLVPVTFALRLLSTFVQ AAFWRAGGDRSRQQLQGKTEAGEP
Sbjct: 1 MWTLVPVTFALRLLSTFVQPLGSLGSSLGPLFLWLWAAFWRAGGDRSRQQLQGKTEAGEP 60
Query: 228 PRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGMEK 407
PRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGMEK
Sbjct: 61 PRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGMEK 120
Query: 408 INFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYLDILAIS 587
INFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLI ERWFKSYGEYLDILAIS
Sbjct: 121 INFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIWERWFKSYGEYLDILAIS 180
Query: 588 CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHIKA 767
CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHIKA
Sbjct: 181 CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHIKA 240
Query: 768 LNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQV 941
LNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQ+
Sbjct: 241 LNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQM 298
>ref|XP_003354984.1| PREDICTED: hypothetical protein LOC100623968 [Sus scrofa].
Length = 460
Score = 375 bits (964), Expect = e-104
Identities = 183/185 (98%), Positives = 184/185 (99%)
Frame = +3
Query: 390 EAGMEKINFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYL 569
+ GMEKINFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYL
Sbjct: 276 DPGMEKINFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYL 335
Query: 570 DILAISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDM 749
DILAISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDM
Sbjct: 336 DILAISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDM 395
Query: 750 TEHIKALNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPES 929
TEHIKALNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPES
Sbjct: 396 TEHIKALNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPES 455
Query: 930 NRQVV 944
NRQVV
Sbjct: 456 NRQVV 460
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,049,089
Number of extensions: 1047035
Number of successful extensions: 2762
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2756
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,779,541
Effective search space: 3467918695
Effective search space used: 3467918695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067359.2| radical S-adenosyl methionine domain-containing... 447 e-125
>ref|NP_067359.2| radical S-adenosyl methionine domain-containing protein 2 [Mus
musculus].
Length = 362
Score = 447 bits (1150), Expect = e-125
Identities = 222/298 (74%), Positives = 243/298 (81%)
Frame = +3
Query: 48 MWTLVPVTFALRLLSTFVQXXXXXXXXXXXXXXXXXAAFWRAGGDRSRQQLQGKTEAGEP 227
M LVP A RLLS F Q A + + Q++G+ E +
Sbjct: 1 MGMLVPTALAARLLSLFQQQLGSLWSGLAILFCWLRIALGWLDPGKEQPQVRGEPEDTQE 60
Query: 228 PRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGMEK 407
+ +S PTTP SVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGL LLK+AG+EK
Sbjct: 61 TQEDGNSTQPTTPVSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKQAGLEK 120
Query: 408 INFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYLDILAIS 587
INFSGGEPF+ DRGEYLGKLVRFCKEEL LPSVSIVSNGSLIRERWFK YGEYLDILAIS
Sbjct: 121 INFSGGEPFLQDRGEYLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGEYLDILAIS 180
Query: 588 CDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHIKA 767
CDSFDEQVN LIGRGQGKKNHVENLQKLR WCRDYKVAFKINSVINRFNV+EDM EHIKA
Sbjct: 181 CDSFDEQVNALIGRGQGKKNHVENLQKLRRWCRDYKVAFKINSVINRFNVDEDMNEHIKA 240
Query: 768 LNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQV 941
L+PVRWKVFQCLLIEGEN GEDALREAE+F+IS+EEFE FL+RHK+VSCLVPESN+++
Sbjct: 241 LSPVRWKVFQCLLIEGENSGEDALREAERFLISNEEFETFLERHKEVSCLVPESNQKM 298
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,297,814
Number of extensions: 1107197
Number of successful extensions: 3482
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3479
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 392
Effective length of database: 12,433,743
Effective search space: 4874027256
Effective search space used: 4874027256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542388.2| radical S-adenosyl methionine domain-containing... 467 e-131
>ref|NP_542388.2| radical S-adenosyl methionine domain-containing protein 2 [Homo
sapiens].
Length = 361
Score = 467 bits (1201), Expect = e-131
Identities = 237/318 (74%), Positives = 256/318 (80%), Gaps = 2/318 (0%)
Frame = +3
Query: 48 MWTLVPVTFALRLLSTFVQXXXXXXXXXXXXXXXXXAAFWRAGGDRSRQQL--QGKTEAG 221
MW L P FA +LLS F Q A FW R +QQL +G E
Sbjct: 1 MWVLTPAAFAGKLLSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRRKQQLVLRGPDETK 60
Query: 222 EPPRAQEDSHLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLWLLKEAGM 401
E +ED LPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGL LLKEAGM
Sbjct: 61 EE---EEDPPLPTTPTSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKEAGM 117
Query: 402 EKINFSGGEPFIHDRGEYLGKLVRFCKEELQLPSVSIVSNGSLIRERWFKSYGEYLDILA 581
EKINFSGGEPF+ DRGEYLGKLVRFCK EL+LPSVSIVSNGSLIRERWF++YGEYLDILA
Sbjct: 118 EKINFSGGEPFLQDRGEYLGKLVRFCKVELRLPSVSIVSNGSLIRERWFQNYGEYLDILA 177
Query: 582 ISCDSFDEQVNVLIGRGQGKKNHVENLQKLRTWCRDYKVAFKINSVINRFNVEEDMTEHI 761
ISCDSFDE+VNVLIGRGQGKKNHVENLQKLR WCRDY+VAFKINSVINRFNVEEDMTE I
Sbjct: 178 ISCDSFDEEVNVLIGRGQGKKNHVENLQKLRRWCRDYRVAFKINSVINRFNVEEDMTEQI 237
Query: 762 KALNPVRWKVFQCLLIEGENVGEDALREAEQFVISDEEFEEFLDRHKDVSCLVPESNRQV 941
KALNPVRWKVFQCLLIEGEN GEDALREAE+FVI DEEFE FL+RHK+VSCLVPESN+++
Sbjct: 238 KALNPVRWKVFQCLLIEGENCGEDALREAERFVIGDEEFERFLERHKEVSCLVPESNQKM 297
Query: 942 V*SKSCFVAHHTFVSKRK 995
S + F++ RK
Sbjct: 298 KDSYLILDEYMRFLNCRK 315
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,070,287
Number of extensions: 1310917
Number of successful extensions: 4214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4210
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 391
Effective length of database: 14,770,016
Effective search space: 5775076256
Effective search space used: 5775076256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014329
(1494 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 789 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 789 bits (398), Expect = 0.0
Identities = 398/398 (100%)
Strand = Plus / Minus
Query: 1 tataaactgagcctggagctgcagccagcctcagagcacctgctgccatgtggacactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683561 tataaactgagcctggagctgcagccagcctcagagcacctgctgccatgtggacactgg 137683502
Query: 61 tacctgtcacctttgccctcaggctgctgagcaccttcgtgcagcccctgggctcgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683501 tacctgtcacctttgccctcaggctgctgagcaccttcgtgcagcccctgggctcgctgg 137683442
Query: 121 gcagcagcctggggcccctgttcctctggctctgggcagctttctggcgggcagggggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683441 gcagcagcctggggcccctgttcctctggctctgggcagctttctggcgggcagggggtg 137683382
Query: 181 ataggagccggcagcagctgcagggtaaaacagaagctggggaacccccgagggcacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683381 ataggagccggcagcagctgcagggtaaaacagaagctggggaacccccgagggcacagg 137683322
Query: 241 aggacagccatctgcccaccacccccactagcgtcaattaccacttcacccgccagtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683321 aggacagccatctgcccaccacccccactagcgtcaattaccacttcacccgccagtgca 137683262
Query: 301 actacaagtgtggcttctgcttccacacggccaagacatccttcgtgctgcccctggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137683261 actacaagtgtggcttctgcttccacacggccaagacatccttcgtgctgcccctggagg 137683202
Query: 361 aagccaagagaggcttgtggctgctgaaggaagcgggt 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 137683201 aagccaagagaggcttgtggctgctgaaggaagcgggt 137683164
Score = 714 bits (360), Expect = 0.0
Identities = 363/364 (99%)
Strand = Plus / Minus
Query: 787 aggtcttccaatgcctcttaattgagggtgagaatgttggagaagatgctctgagagaag 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673559 aggtcttccaatgcctcttaattgagggtgagaatgttggagaagatgctctgagagaag 137673500
Query: 847 cagagcagtttgttatcagcgacgaagagtttgaggaattcttagaccgccacaaagacg 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673499 cagagcagtttgttatcagcgacgaagagtttgaggaattcttagaccgccacaaagacg 137673440
Query: 907 tgtcctgcttggtgcccgagtctaaccggcaggttgtataaagcaaaagctgttttgttg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673439 tgtcctgcttggtgcccgagtctaaccggcaggttgtataaagcaaaagctgttttgttg 137673380
Query: 967 cccatcacacatttgtctcaaagaggaaatctctgcaccaggggttccacatgccgtgac 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673379 cccatcacacatttgtctcaaagaggaaatctctgcaccaggggttccacatgccgtgac 137673320
Query: 1027 ttagggaaccgtcccagggctgaggtggaaggcacctttcacgaatcctttaggcttccc 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673319 ttagggaaccgtcccagggctgaggtggaaggcacctttcacgaatcctttaggcttccc 137673260
Query: 1087 ctatgaacaagtggattcgtcctgttagcaccaaggtgtatattacgtcgattaacatta 1146
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 137673259 ctatgaacaagtggattcgtcctgttagcaccaaggtgtatattatgtcgattaacatta 137673200
Query: 1147 gcca 1150
||||
Sbjct: 137673199 gcca 137673196
Score = 462 bits (233), Expect = e-127
Identities = 233/233 (100%)
Strand = Plus / Minus
Query: 558 ggtgaatatctggacattcttgccatctcctgtgacagctttgatgagcaggtcaatgtc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137677263 ggtgaatatctggacattcttgccatctcctgtgacagctttgatgagcaggtcaatgtc 137677204
Query: 618 cttattggccgtggtcagggaaagaagaaccatgtggaaaatctccaaaaactgaggacg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137677203 cttattggccgtggtcagggaaagaagaaccatgtggaaaatctccaaaaactgaggacg 137677144
Query: 678 tggtgcagggattataaagtggccttcaagataaattcagtcatcaatcgcttcaatgtg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137677143 tggtgcagggattataaagtggccttcaagataaattcagtcatcaatcgcttcaatgtg 137677084
Query: 738 gaagaagatatgacagaacacatcaaagctctgaaccctgtccgctggaaggt 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137677083 gaagaagatatgacagaacacatcaaagctctgaaccctgtccgctggaaggt 137677031
Score = 400 bits (202), Expect = e-109
Identities = 230/238 (96%), Gaps = 2/238 (0%)
Strand = Plus / Minus
Query: 1258 catatattttaatgaaacatttttaaagatgttagccaaaacatgtcgacacttcggagc 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137673088 catatattttaatgaaacatttttaaagatgttagccaaaacatgtcgacacttcggagc 137673029
Query: 1318 ttccaggtgtgagtggcagcagagtaaatagtgtgtcctangacgcntaggagaaaagga 1377
|||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 137673028 ttccaggtgtgagtggcagcagagtaaatagtgtgtcctaggatgctaaggagaaaagga 137672969
Query: 1378 acaccctgctacagctgggttactgccgtggtaaggacggcggtgaaaactccnagtagc 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 137672968 acaccctgctacagctgggttactgccgtggtaaggacggcggtgaaaactccaagtagc 137672909
Query: 1438 cnatattcagccgaacagag-acaggtaaactctacactgacttaacagcatgctgca 1494
| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 137672908 caatattcagccg-acagagaacaggtaaactctacactgacttaacagcatgctgca 137672852
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 396 ggtatggagaagatcaacttttcaggcggagagccgtttatccacgaccggggcgagtac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137679517 ggtatggagaagatcaacttttcaggcggagagccgtttatccacgaccggggcgagtac 137679458
Query: 456 ctgggcaagctggtcaggttctgcaaggaggagctacagctgcccagtgtcagcatcgtg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137679457 ctgggcaagctggtcaggttctgcaaggaggagctacagctgcccagtgtcagcatcgtg 137679398
Query: 516 agcaacgggagcctgatccgggagaggtggttcaagagctatggtga 562
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137679397 agcaacgggagcctgatccgggagaggtggttcaagagctatggtga 137679351
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,177,565
Number of extensions: 400
Number of successful extensions: 400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 5
Length of query: 1494
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1473
Effective length of database: 2,808,413,156
Effective search space: 4136792578788
Effective search space used: 4136792578788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)