Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071308.1| caspase-3 precursor [Bos taurus]. 377 e-105
Alignment gi|XP_002698555.1| PREDICTED: caspase 7-like [Bos taurus]. 208 7e-54
Alignment gi|XP_604643.3| PREDICTED: caspase 7 [Bos taurus]. 208 7e-54
Alignment gi|NP_001030496.1| caspase-6 precursor [Bos taurus]. 134 1e-43
Alignment gi|NP_001039435.1| caspase-8 [Bos taurus]. 125 5e-33
Alignment gi|NP_001192433.1| caspase-9 [Bos taurus]. 132 6e-31
Alignment gi|XP_002694190.1| PREDICTED: caspase 9, apoptosis-related cyst... 132 6e-31
Alignment gi|NP_001137576.1| caspase-2 [Bos taurus]. 90 2e-22
Alignment gi|NP_001012281.1| CASP8 and FADD-like apoptosis regulator [Bos... 75 9e-14
Alignment gi|NP_001192772.1| caspase-14 [Bos taurus]. 74 3e-13
>ref|NP_001071308.1| caspase-3 precursor [Bos taurus].
Length = 275
Score = 377 bits (969), Expect = e-105
Identities = 185/207 (89%), Positives = 195/207 (94%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M NT+NSVDSKSIKT ETKILHGSKS+DSGISL+ SYKMDYPEMGLCIIINNKNF +NTG
Sbjct: 1 MENTENSVDSKSIKTSETKILHGSKSMDSGISLEESYKMDYPEMGLCIIINNKNFHENTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
MACRSGTDVDAANLRETF NLKYEVR KNDLT +E+LELM +VSKEDHSKRSSFICVLLS
Sbjct: 61 MACRSGTDVDAANLRETFMNLKYEVRIKNDLTCKEMLELMSNVSKEDHSKRSSFICVLLS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HGEEG IFGTNGPV+LKKL SFFRGD CR+LTGKPKLFIIQACRGTELDCGIETDSG ED
Sbjct: 121 HGEEGIIFGTNGPVNLKKLASFFRGDYCRSLTGKPKLFIIQACRGTELDCGIETDSGAED 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
DMACQKIPVEADFLYAYSTAPGY+SWR
Sbjct: 181 DMACQKIPVEADFLYAYSTAPGYFSWR 207
Score = 113 bits (282), Expect = 3e-25
Identities = 54/77 (70%), Positives = 64/77 (83%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W N+K+GSWFIQ+LC LK++AH+LELMHILTRVN KVA+E+ESFSTDS FHA
Sbjct: 203 YFSW----RNAKNGSWFIQALCEMLKKHAHRLELMHILTRVNRKVAIEYESFSTDSAFHA 258
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPCI+SMLTK F
Sbjct: 259 KKQIPCIMSMLTKELYF 275
>ref|XP_002698555.1| PREDICTED: caspase 7-like [Bos taurus].
Length = 301
Score = 208 bits (529), Expect = 7e-54
Identities = 113/228 (49%), Positives = 149/228 (65%), Gaps = 12/228 (5%)
Frame = +1
Query: 82 NSVDSKSIKT-LETKILHGSKSVDSGISLDV--------SYKMDYPEMGLCIIINNKNFD 234
++VD+K ++ + I K DSG S+++ Y M++ ++G CIIINNKNFD
Sbjct: 20 DTVDAKPDRSSFVSSIFSKKKKNDSGKSVNIPRDRVPTYQYNMNFEKVGKCIIINNKNFD 79
Query: 235 KNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC 414
+ TGM R+GTD DA L + F +L ++V ND + ++ +L+ S+EDH + F C
Sbjct: 80 RITGMGVRNGTDKDAEALFKCFRSLGFDVSVYNDCSCAKMQDLLKKASEEDHRNSACFAC 139
Query: 415 VLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDS 594
+LLSHGEE I+GT+G +K LT+ FRGD C+TL KPKLF IQACRGTELD GI+ DS
Sbjct: 140 ILLSHGEENLIYGTDGKTAIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADS 199
Query: 595 GTEDDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
G +D KIPVEADFL+AYST PGYYSWR +PGS S FVQ
Sbjct: 200 GPINDTDANPRYKIPVEADFLFAYSTVPGYYSWR----NPGSGSWFVQ 243
Score = 84.3 bits (207), Expect = 1e-16
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W N GSWF+Q+LC+ L ++ LE++ ILTRVN +VA FES S D FH
Sbjct: 229 YYSW----RNPGSGSWFVQALCSILNEHGKSLEILQILTRVNDRVARHFESQSDDPRFHE 284
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPC+VSMLTK F
Sbjct: 285 KKQIPCVVSMLTKELYF 301
>ref|XP_604643.3| PREDICTED: caspase 7 [Bos taurus].
Length = 301
Score = 208 bits (529), Expect = 7e-54
Identities = 113/228 (49%), Positives = 149/228 (65%), Gaps = 12/228 (5%)
Frame = +1
Query: 82 NSVDSKSIKT-LETKILHGSKSVDSGISLDV--------SYKMDYPEMGLCIIINNKNFD 234
++VD+K ++ + I K DSG S+++ Y M++ ++G CIIINNKNFD
Sbjct: 20 DTVDAKPDRSSFVSSIFSKKKKNDSGKSVNIPRDRVPTYQYNMNFEKVGKCIIINNKNFD 79
Query: 235 KNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC 414
+ TGM R+GTD DA L + F +L ++V ND + ++ +L+ S+EDH + F C
Sbjct: 80 RITGMGVRNGTDKDAEALFKCFRSLGFDVSVYNDCSCAKMQDLLKKASEEDHRNSACFAC 139
Query: 415 VLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDS 594
+LLSHGEE I+GT+G +K LT+ FRGD C+TL KPKLF IQACRGTELD GI+ DS
Sbjct: 140 ILLSHGEENLIYGTDGKTAIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADS 199
Query: 595 GTEDDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
G +D KIPVEADFL+AYST PGYYSWR +PGS S FVQ
Sbjct: 200 GPINDTDANPRYKIPVEADFLFAYSTVPGYYSWR----NPGSGSWFVQ 243
Score = 84.3 bits (207), Expect = 1e-16
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W N GSWF+Q+LC+ L ++ LE++ ILTRVN +VA FES S D FH
Sbjct: 229 YYSW----RNPGSGSWFVQALCSILNEHGKSLEILQILTRVNDRVARHFESQSDDPRFHE 284
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPC+VSMLTK F
Sbjct: 285 KKQIPCVVSMLTKELYF 301
>ref|NP_001030496.1| caspase-6 precursor [Bos taurus].
Length = 293
Score = 134 bits (338), Expect(2) = 1e-43
Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 13/184 (7%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
YKMD+ G+ +I N++ F + + R GT D NLR F++L +EV+ +DL EE+
Sbjct: 37 YKMDHKRRGIALIFNHERFFWHLTLPNRPGTSADRDNLRRRFSDLGFEVKCFDDLRAEEL 96
Query: 355 LELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPK 534
L +H S H F+CV LSHGE I+ + ++++ LT F+GD C++L GKPK
Sbjct: 97 LLKIHEASTASHVDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCQSLVGKPK 156
Query: 535 LFIIQACRGTELDCGI----ETDSGTE---------DDMACQKIPVEADFLYAYSTAPGY 675
+FIIQACRG++ D + D T+ D + +P ADFL YS A GY
Sbjct: 157 IFIIQACRGSQHDVPVIPLDVVDHRTDTPDANLTQVDAASVYTLPAGADFLMCYSVAEGY 216
Query: 676 YSWR 687
YS R
Sbjct: 217 YSHR 220
Score = 60.8 bits (146), Expect(2) = 1e-43
Identities = 31/71 (43%), Positives = 41/71 (57%)
Frame = +3
Query: 696 DGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
+GSW+IQ LC L ++ LE +LT VN KV+ F D KKQ+PC SMLT
Sbjct: 224 NGSWYIQDLCEMLGKFGSSLEFTELLTLVNRKVSQRRVDFCRDPNAIGKKQVPCFASMLT 283
Query: 876 KNSIFLSPKNE 908
K + SPK++
Sbjct: 284 K-KLHFSPKSK 293
>ref|NP_001039435.1| caspase-8 [Bos taurus].
Length = 485
Score = 125 bits (314), Expect(2) = 5e-33
Identities = 76/191 (39%), Positives = 108/191 (56%), Gaps = 17/191 (8%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFD-------KNTGMACRSGTDVDAANLRETFTNLKYEVR 324
D Y+M G C+I NN +F + + R+GTD DA L +TF L +E+
Sbjct: 229 DTVYRMTSKPRGYCLIFNNYDFSIARKQVPELHDLKDRTGTDFDADALDKTFRELHFEIV 288
Query: 325 NKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PVDLKKLTSFFRG 501
+ DLT + I E++ S K+DH + FIC +L+HG +G I+G++G + +LTS+F G
Sbjct: 289 HYKDLTAKGICEVLESYQKKDHKNKDCFICCILTHGNKGIIYGSDGQEASIYELTSYFTG 348
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCG--IETDSG-----TEDDMACQK--IPVEADFLYA 654
C +L GKPK+F IQAC+G + G +ETDS E D + QK IP EADFL
Sbjct: 349 LKCPSLIGKPKIFFIQACQGDKYQKGVAVETDSEQMEAYLEVDSSPQKRYIPDEADFLLG 408
Query: 655 YSTAPGYYSWR 687
+T Y S+R
Sbjct: 409 MATVKNYVSYR 419
Score = 34.7 bits (78), Expect(2) = 5e-33
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC L++ + E ++ ILT+VN FE D KQ+P
Sbjct: 420 NIWNGAWYIQSLCQNLRERCPRGEDILTILTKVN------FEVSKLDDKQRMAKQMPQPT 473
Query: 864 SMLTKNSIF 890
L K F
Sbjct: 474 FTLRKKLFF 482
>ref|NP_001192433.1| caspase-9 [Bos taurus].
Length = 423
Score = 132 bits (331), Expect = 6e-31
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 32/220 (14%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF + +G+ R+G+++D +R+ F L++ V K DLT
Sbjct: 158 DLAYVLNADPCGHCLIINNVNFCRESGLRARTGSNIDCERMRQRFHLLQFVVEVKCDLTA 217
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + ++++DHS + V+LSHG + G ++GT+G PV ++++ + F G
Sbjct: 218 KQMVQALMQLARQDHSALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVERIVNTFNG 277
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G E +S + +D
Sbjct: 278 TGCPSLRGKPKLFFIQACGGEQKDHGFEVESTSPEDKTPSSDPEADATPFQEGPRSIDEP 337
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
A +P +D L +YST PG+ SWR DP S S +++
Sbjct: 338 DAVSSLPTPSDILVSYSTFPGFVSWR----DPKSGSWYIE 373
>ref|XP_002694190.1| PREDICTED: caspase 9, apoptosis-related cysteine peptidase [Bos
taurus].
Length = 423
Score = 132 bits (331), Expect = 6e-31
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 32/220 (14%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF + +G+ R+G+++D +R+ F L++ V K DLT
Sbjct: 158 DLAYVLNADPCGHCLIINNVNFCRESGLRARTGSNIDCERMRQRFHLLQFVVEVKCDLTA 217
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + ++++DHS + V+LSHG + G ++GT+G PV ++++ + F G
Sbjct: 218 KQMVQALMQLARQDHSALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVERIVNTFNG 277
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G E +S + +D
Sbjct: 278 TGCPSLRGKPKLFFIQACGGEQKDHGFEVESTSPEDKTPSSDPEADATPFQEGPRSIDEP 337
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
A +P +D L +YST PG+ SWR DP S S +++
Sbjct: 338 DAVSSLPTPSDILVSYSTFPGFVSWR----DPKSGSWYIE 373
>ref|NP_001137576.1| caspase-2 [Bos taurus].
Length = 452
Score = 89.7 bits (221), Expect(2) = 2e-22
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Frame = +1
Query: 169 VSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTRE 348
++Y++ GL ++++N +F + RSG DVD + L F L Y+V D T +
Sbjct: 190 LAYRLQSRPRGLALVLSNVHFTGEKDLEFRSGGDVDHSTLVTLFKLLGYKVHVLLDQTAQ 249
Query: 349 EILELMHSVSKED-HSKRSSFICVLLSHGEEGKIFGTNGPV-DLKKLTSFFRGDCCRTLT 522
E+ E + + ++ H S I LLSHG EG ++G +G + L+++ F C +L
Sbjct: 250 EMQEKLQNFAQLPVHRVTDSCIVALLSHGVEGGVYGVDGKLLQLQEVFRLFDNANCPSLQ 309
Query: 523 GKPKLFIIQACRGTELDCGIETDSGTEDDMA--CQ------------KIPVEADFLYAYS 660
KPK+F IQACRG E D G++ G D + C+ ++P +D + Y+
Sbjct: 310 NKPKMFFIQACRGDETDRGVDLQDGKNHDRSPKCEESDASREELLKMRLPTRSDMICGYA 369
Query: 661 TAPGYYSWR 687
G + R
Sbjct: 370 CLRGTAAMR 378
Score = 35.0 bits (79), Expect(2) = 2e-22
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = +3
Query: 681 LANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCI 860
+ N+K GSW++++L + A + + +L +VN + E E ++ + FH K++
Sbjct: 377 MRNTKRGSWYVEALTQVFSERACDMHVADMLVKVNALIK-EREGYAPGTEFHRCKEMSEY 435
Query: 861 VSMLTKNSIFLSP 899
S L ++ ++L P
Sbjct: 436 CSTLCRH-LYLFP 447
>ref|NP_001012281.1| CASP8 and FADD-like apoptosis regulator [Bos taurus].
Length = 484
Score = 75.1 bits (183), Expect = 9e-14
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
YKM +G+C+II+ C G D D LR+TFT+L YEV++ LT ++I
Sbjct: 246 YKMQSKPLGICLIID-----------C-IGNDTDI--LRDTFTSLGYEVKHFLYLTVKDI 291
Query: 355 LELMHSVSK-EDHSKRSSFICVLLSHGEEGKIFG---TNGPVDLKKLTSFFRGDCCRTLT 522
++ V++ H SF C+L+S G +FG T+ V L + F D C +L+
Sbjct: 292 TNILRQVAQMPQHQDSDSFACILVSRGGSQSVFGVDQTHSGVPLDHIRRMFMADTCPSLS 351
Query: 523 GKPKLFIIQA 552
GKPKLF IQ+
Sbjct: 352 GKPKLFFIQS 361
>ref|NP_001192772.1| caspase-14 [Bos taurus].
Length = 242
Score = 73.6 bits (179), Expect = 3e-13
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Frame = +1
Query: 256 RSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC---VLLS 426
R G++ D L F L +E K D T ++ E + + ++ C VL++
Sbjct: 29 REGSEADLDALERMFQQLGFESTMKRDPTAQQFQEELEKFQQAIDAREDFVSCAFVVLMA 88
Query: 427 HGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSG-- 597
HG EG++ G + V+L+ L CR L KPK++I+QACRG + D G G
Sbjct: 89 HGLEGRLKGKDEKMVELEDLFQALNNKNCRALRAKPKVYIVQACRGEQRDPGEPVTGGHL 148
Query: 598 ---TEDDMACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
TE+ + IP D L+ +ST GY ++R + S+F+Q
Sbjct: 149 VMITEN--TPETIPTYTDTLHVFSTIEGYIAYRHDQ----EGSYFIQ 189
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,694,992
Number of extensions: 893489
Number of successful extensions: 2068
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2043
Number of HSP's successfully gapped: 21
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014331
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003042.1| caspase-3 precursor [Canis lupus familiaris]. 377 e-104
Alignment gi|XP_544026.2| PREDICTED: similar to caspase 7 isoform delta [... 209 4e-54
Alignment gi|XP_545022.2| PREDICTED: similar to caspase 6 isoform alpha p... 134 5e-43
Alignment gi|NP_001041494.1| caspase-8 [Canis lupus familiaris]. 129 6e-35
Alignment gi|XP_865164.1| PREDICTED: caspase 9, apoptosis-related cystein... 121 1e-27
Alignment gi|XP_852163.1| PREDICTED: caspase 9, apoptosis-related cystein... 121 1e-27
Alignment gi|NP_001026803.1| caspase-9 [Canis lupus familiaris]. 121 1e-27
Alignment gi|XP_545593.2| PREDICTED: similar to caspase 10 isoform a prep... 95 4e-25
Alignment gi|NP_001182080.1| caspase-2 [Canis lupus familiaris]. 91 2e-22
Alignment gi|XP_853064.1| PREDICTED: similar to Caspase-14 precursor (CAS... 83 5e-16
>ref|NP_001003042.1| caspase-3 precursor [Canis lupus familiaris].
Length = 277
Score = 377 bits (967), Expect = e-104
Identities = 183/207 (88%), Positives = 194/207 (93%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M NT+NSVD+KS K ETKILHGSKS+DSG+S D SYKMDYPEMGLCIIINNKNF K+TG
Sbjct: 1 MENTENSVDAKSFKNAETKILHGSKSMDSGMSFDNSYKMDYPEMGLCIIINNKNFHKSTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
MA RSGTDVDAANLRETFTNLKYEVRNKNDLT EEILELM+SVSKEDHSKRSSF+CVLLS
Sbjct: 61 MAPRSGTDVDAANLRETFTNLKYEVRNKNDLTCEEILELMNSVSKEDHSKRSSFVCVLLS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HG+EG IFGTNGPVDL+K+T FFRGD CR+LTGKPKLFIIQACRGTELDCGIETDSG ED
Sbjct: 121 HGDEGIIFGTNGPVDLRKVTGFFRGDYCRSLTGKPKLFIIQACRGTELDCGIETDSGIED 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
DMACQKIPVEADFLYAYSTAPGYYSWR
Sbjct: 181 DMACQKIPVEADFLYAYSTAPGYYSWR 207
Score = 115 bits (289), Expect = 5e-26
Identities = 58/73 (79%), Positives = 59/73 (80%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W NSKDGSWFIQSLCA LK YAHKLE MHILTRVN KVA EFESFS DS FH
Sbjct: 203 YYSW----RNSKDGSWFIQSLCAMLKLYAHKLEFMHILTRVNRKVATEFESFSLDSAFHG 258
Query: 840 KKQIPCIVSMLTK 878
KKQIPCIVSMLTK
Sbjct: 259 KKQIPCIVSMLTK 271
>ref|XP_544026.2| PREDICTED: similar to caspase 7 isoform delta [Canis familiaris].
Length = 359
Score = 209 bits (531), Expect = 4e-54
Identities = 112/225 (49%), Positives = 142/225 (63%), Gaps = 3/225 (1%)
Frame = +1
Query: 64 LMANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNT 243
L + K + +SIKT + ++ Y M++ ++G CIIINNKNFDK T
Sbjct: 93 LFSRKKKNDSGRSIKTAQDQVP------------TYQYNMNFEKVGKCIIINNKNFDKTT 140
Query: 244 GMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLL 423
GM R+GTD DA L + F NL ++V ND + ++ +L+ S+EDH + F C+LL
Sbjct: 141 GMGVRNGTDKDAEALFKCFRNLGFDVVIYNDCSCAKMQDLLKKASEEDHRNSACFACILL 200
Query: 424 SHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
SHGEE I+GT+G +K LT+ FRGD CRTL KPKLF IQACRGTELD G++ DSG
Sbjct: 201 SHGEENLIYGTDGMTAIKDLTAHFRGDRCRTLLEKPKLFFIQACRGTELDDGVQADSGPI 260
Query: 604 DDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
+D KIPVEADFL+AYST PGYYSWR PGS S FVQ
Sbjct: 261 NDTDANPRYKIPVEADFLFAYSTVPGYYSWR----SPGSGSWFVQ 301
Score = 85.5 bits (210), Expect = 7e-17
Identities = 39/64 (60%), Positives = 48/64 (75%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLTK 878
GSWF+Q+LC+ L ++ LE++HILTRVN +VA FES S D FH KKQIPC+VSMLTK
Sbjct: 296 GSWFVQALCSTLNEHGKSLEILHILTRVNNRVARHFESQSDDPHFHEKKQIPCVVSMLTK 355
Query: 879 NSIF 890
F
Sbjct: 356 ELYF 359
>ref|XP_545022.2| PREDICTED: similar to caspase 6 isoform alpha preproprotein [Canis
familiaris].
Length = 293
Score = 134 bits (337), Expect(2) = 5e-43
Identities = 74/184 (40%), Positives = 101/184 (54%), Gaps = 13/184 (7%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
YKMD+ G+ +I N++ F + + R GT D NL F+ L +EV+ NDL EE+
Sbjct: 37 YKMDHKRRGIALIFNHERFFWHLTLPDRRGTSADRDNLVRRFSELGFEVKCFNDLKAEEL 96
Query: 355 LELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPK 534
L +H S H F+CV LSHGE I+ + ++++ LT F+GD C++L GKPK
Sbjct: 97 LLKIHEASTSSHIDADCFLCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCQSLVGKPK 156
Query: 535 LFIIQACRGTELDCGI------------ETDSGTEDDMA-CQKIPVEADFLYAYSTAPGY 675
+FIIQACRG + D + D+ TE D A +P ADFL YS A GY
Sbjct: 157 IFIIQACRGDQHDVPVLPLDVVDHRTDKLEDNVTEVDAASVYTLPAGADFLMCYSVAEGY 216
Query: 676 YSWR 687
YS R
Sbjct: 217 YSHR 220
Score = 59.3 bits (142), Expect(2) = 5e-43
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +3
Query: 696 DGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
+GSW+IQ LC L ++ LE +LT VN KV+ F D KKQ+PC SMLT
Sbjct: 224 NGSWYIQDLCEMLGKFGSSLEFTELLTLVNRKVSQRRVDFCKDPNAIGKKQVPCFASMLT 283
Query: 876 KNSIFLSPKNE 908
K F PK++
Sbjct: 284 KKLHFF-PKSK 293
>ref|NP_001041494.1| caspase-8 [Canis lupus familiaris].
Length = 486
Score = 129 bits (325), Expect(2) = 6e-35
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 17/215 (7%)
Frame = +1
Query: 100 SIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFD-------KNTGMACR 258
S+K L G + +S S D Y+M G C+I NN +F K + R
Sbjct: 209 SVKILPMSDSLGEQDYESETS-DKVYRMKSKPRGYCLIFNNYDFSVARREVPKLQSIKDR 267
Query: 259 SGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEE 438
+GTD+DA L +TF+ L +E+ + D T ++I E++ S DHS + FIC +LSHG++
Sbjct: 268 NGTDLDADALSKTFSELHFEIVHFKDATAKKICEVLQSYQSMDHSSKDCFICCILSHGDK 327
Query: 439 GKIFGTNG-PVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGI--ETDSGTED- 606
G I+G++G + +LTS+F G C +L GKPK+F IQAC+G + GI ETDS ++
Sbjct: 328 GIIYGSDGQEAPIYELTSYFTGSKCPSLAGKPKIFFIQACQGDKYQKGIAVETDSEQKEA 387
Query: 607 ----DMACQK--IPVEADFLYAYSTAPGYYSWRIP 693
D + QK IP +ADFL +T S+R P
Sbjct: 388 YLEMDSSYQKRYIPEDADFLLGMATVNNCVSYRNP 422
Score = 37.0 bits (84), Expect(2) = 6e-35
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC +L++ + E ++ ILT VN FE + D + KQ+P
Sbjct: 421 NPMEGTWYIQSLCQSLRERCPRGEDILTILTEVN------FEVSNKDDRKNMGKQMPQPT 474
Query: 864 SMLTKNSIF 890
L K F
Sbjct: 475 FTLRKKLFF 483
>ref|XP_865164.1| PREDICTED: caspase 9, apoptosis-related cysteine protease isoform 3
[Canis familiaris].
Length = 414
Score = 121 bits (303), Expect = 1e-27
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 32/206 (15%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF + + R G+++D L+ F L++ V K DLT
Sbjct: 149 DLAYALNADPCGYCLIINNVNFCPESRLTARGGSNIDCEKLQRRFCLLRFTVEVKWDLTA 208
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + +++ DHS + V+LSHG E G ++GT+G PV ++K+ + F G
Sbjct: 209 KQMVQALVELARRDHSALDCCVVVVLSHGCEASHRQFPGAVYGTDGCPVSIEKIVNIFNG 268
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G S + +D
Sbjct: 269 TGCPSLGGKPKLFFIQACGGEQKDHGFAVASASPEDRSPGSDSEPDAVPFQEGPGPFDQL 328
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWR 687
A +P +D +YST PG+ SWR
Sbjct: 329 DAVSSLPTPSDIFVSYSTFPGFVSWR 354
>ref|XP_852163.1| PREDICTED: caspase 9, apoptosis-related cysteine protease isoform 2
[Canis familiaris].
Length = 445
Score = 121 bits (303), Expect = 1e-27
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 32/206 (15%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF + + R G+++D L+ F L++ V K DLT
Sbjct: 180 DLAYALNADPCGYCLIINNVNFCPESRLTARGGSNIDCEKLQRRFCLLRFTVEVKWDLTA 239
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + +++ DHS + V+LSHG E G ++GT+G PV ++K+ + F G
Sbjct: 240 KQMVQALVELARRDHSALDCCVVVVLSHGCEASHRQFPGAVYGTDGCPVSIEKIVNIFNG 299
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G S + +D
Sbjct: 300 TGCPSLGGKPKLFFIQACGGEQKDHGFAVASASPEDRSPGSDSEPDAVPFQEGPGPFDQL 359
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWR 687
A +P +D +YST PG+ SWR
Sbjct: 360 DAVSSLPTPSDIFVSYSTFPGFVSWR 385
>ref|NP_001026803.1| caspase-9 [Canis lupus familiaris].
Length = 445
Score = 121 bits (303), Expect = 1e-27
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 32/206 (15%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF + + R G+++D L+ F L++ V K DLT
Sbjct: 180 DLAYALNADPCGYCLIINNVNFCPESRLTARGGSNIDCEKLQRRFCLLRFTVEVKWDLTA 239
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + +++ DHS + V+LSHG E G ++GT+G PV ++K+ + F G
Sbjct: 240 KQMVQALVELARRDHSALDCCVVVVLSHGCEASHRQFPGAVYGTDGCPVSIEKIVNIFNG 299
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G S + +D
Sbjct: 300 TGCPSLGGKPKLFFIQACGGEQKDHGFAVASASPEDRSPGSDSEPDAVPFQEGPGPFDQL 359
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWR 687
A +P +D +YST PG+ SWR
Sbjct: 360 DAVSSLPTPSDIFVSYSTFPGFVSWR 385
>ref|XP_545593.2| PREDICTED: similar to caspase 10 isoform a preproprotein [Canis
familiaris].
Length = 484
Score = 95.1 bits (235), Expect(2) = 4e-25
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 7/178 (3%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
Y+MD G C+I+NN F K M R GTD DA L F L + V ++T+ +
Sbjct: 238 YRMDRKHRGHCVIVNNHTFAK---MPDRPGTDKDAECLSRVFQWLGFSVHVYKNVTKGHL 294
Query: 355 LELMHSVS-KEDHSKRSSFICVLLSHGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGK 528
E++ DH F+ +L+HG+ G ++ ++G V ++++ S F C L K
Sbjct: 295 DEVLQEFKCHPDHVDGDCFVFCVLTHGKFGAVYSSDGTLVPIREIMSHFTAQKCPGLAHK 354
Query: 529 PKLFIIQAC--RGTELDCGIETDSGTEDDMA---CQKIPVEADFLYAYSTAPGYYSWR 687
PKLF IQAC +G + IE D+ + ++ IP ADFL +T PGY S+R
Sbjct: 355 PKLFFIQACQGKGIQTPVSIEADAVNPEHVSPSLKDSIPDAADFLLGLATVPGYVSFR 412
Score = 38.5 bits (88), Expect(2) = 4e-25
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
GSW+IQSLC LK + E ++ ILT VN V+ + + T KQ+P L
Sbjct: 417 GSWYIQSLCNRLKSLVPRHEDILSILTAVNNDVSQQADKQGT------MKQMPQPAYTLR 470
Query: 876 KNSIFLSPKNE 908
K +F P+ E
Sbjct: 471 KKLVFPVPQKE 481
>ref|NP_001182080.1| caspase-2 [Canis lupus familiaris].
Length = 452
Score = 90.5 bits (223), Expect(2) = 2e-22
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Frame = +1
Query: 169 VSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTRE 348
++Y++ GL ++++N +F + RSG DVD + L F L Y+V D T +
Sbjct: 190 LAYRLQSRPRGLALVLSNVHFTGEKDLEFRSGGDVDHSTLVTLFKLLGYKVHVLLDQTAQ 249
Query: 349 EILELMHSVSK-EDHSKRSSFICVLLSHGEEGKIFGTNGPV-DLKKLTSFFRGDCCRTLT 522
E+ E + + ++ H S I LLSHG EG I+G +G + L+++ F C L
Sbjct: 250 EMKEKLQNFAQLPAHRVTDSCIVALLSHGVEGGIYGVDGKLLQLQEVFRLFDNASCPNLQ 309
Query: 523 GKPKLFIIQACRGTELDCGIETDSG--------------TEDDMACQKIPVEADFLYAYS 660
KPK+F IQACRG E D G++ G +++++ ++P +D + Y+
Sbjct: 310 NKPKMFFIQACRGDETDRGVDQQDGKNHTGSSECEESDASKEELLKTRLPTRSDMICGYA 369
Query: 661 TAPGYYSWR 687
G + R
Sbjct: 370 CLRGTAAMR 378
Score = 34.3 bits (77), Expect(2) = 2e-22
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 681 LANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCI 860
+ N+K GSW+I++L + A + +L +VN + E E ++ + FH K++
Sbjct: 377 MRNTKRGSWYIEALTQVFSERACDTHVADMLVKVNALIK-EREGYAPGTEFHRCKEMSEY 435
Query: 861 VSMLTKNSIFLSP 899
S L ++ ++L P
Sbjct: 436 CSTLCRH-LYLFP 447
>ref|XP_853064.1| PREDICTED: similar to Caspase-14 precursor (CASP-14) [Canis
familiaris].
Length = 257
Score = 82.8 bits (203), Expect = 5e-16
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 9/153 (5%)
Frame = +1
Query: 256 RSGTDVDAANLRETFTNLKYEVRNKNDLT----REEILELMHSVSKEDHSKRSSFICVLL 423
R G++ D L F L +E K D T +EE+ + ++ D +F+ VL+
Sbjct: 44 REGSEADLDALERMFQQLGFESTMKRDPTAQQFQEELDKFQQAMDARDDFISCAFV-VLM 102
Query: 424 SHGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGT 600
+HG EG++ G +G V+L+ L CR L KPK++I+QACRG + D G ET SG
Sbjct: 103 AHGLEGRLKGEDGEMVELEDLFKVLNNKNCRALRAKPKVYIVQACRGEQRDPG-ETVSGD 161
Query: 601 EDDMAC----QKIPVEADFLYAYSTAPGYYSWR 687
+ M Q IP D L+ YST GY ++R
Sbjct: 162 DIVMITKDNPQTIPTYTDILHVYSTVEGYIAYR 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,182,141
Number of extensions: 915480
Number of successful extensions: 2013
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1989
Number of HSP's successfully gapped: 22
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999296.1| caspase-3 precursor [Sus scrofa]. 417 e-117
Alignment gi|XP_003129304.2| PREDICTED: caspase-6-like [Sus scrofa]. 108 3e-35
Alignment gi|NP_001026949.2| caspase-8 [Sus scrofa]. 127 8e-35
Alignment gi|NP_001155112.1| caspase-10 [Sus scrofa]. 106 2e-27
Alignment gi|XP_003127667.1| PREDICTED: caspase-9-like isoform 2 [Sus scr... 118 4e-27
Alignment gi|XP_003127666.1| PREDICTED: caspase-9-like isoform 1 [Sus scr... 118 4e-27
Alignment gi|XP_003359654.1| PREDICTED: caspase-8-like [Sus scrofa]. 100 8e-27
Alignment gi|XP_003134619.1| PREDICTED: caspase-2-like isoform 1 [Sus scr... 91 3e-23
Alignment gi|XP_003123478.1| PREDICTED: caspase-14-like [Sus scrofa]. 80 2e-15
Alignment gi|NP_001032224.1| caspase-15 [Sus scrofa]. 74 1e-13
>ref|NP_999296.1| caspase-3 precursor [Sus scrofa].
Length = 277
Score = 417 bits (1073), Expect = e-117
Identities = 203/207 (98%), Positives = 204/207 (98%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M N K SVDSKSIKTLETKILHGSKS+DSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG
Sbjct: 1 MENNKTSVDSKSIKTLETKILHGSKSMDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS
Sbjct: 61 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED
Sbjct: 121 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
DMACQKIPVEADFLYAYSTAPGYYSWR
Sbjct: 181 DMACQKIPVEADFLYAYSTAPGYYSWR 207
Score = 129 bits (323), Expect = 3e-30
Identities = 65/77 (84%), Positives = 66/77 (85%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W NSKDGSWFIQSLCAALKQY HKLELMHILTRVN KVAVEFESFSTDSTFHA
Sbjct: 203 YYSW----RNSKDGSWFIQSLCAALKQYVHKLELMHILTRVNRKVAVEFESFSTDSTFHA 258
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPCIVSMLTK F
Sbjct: 259 KKQIPCIVSMLTKELYF 275
>ref|XP_003129304.2| PREDICTED: caspase-6-like [Sus scrofa].
Length = 248
Score = 108 bits (269), Expect(2) = 3e-35
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 13/143 (9%)
Frame = +1
Query: 298 FTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLK 477
F++L +EV+ NDL EE+L +H S H F+CV LSHGE I+ + ++++
Sbjct: 34 FSDLGFEVKCFNDLRAEELLLKIHEASTASHVDADCFLCVFLSHGEGNHIYAYDAKIEIQ 93
Query: 478 KLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGI--------ETDS-----GTEDDMAC 618
LT F+GD C++L GKPK+FIIQACRG + D + +TD D +
Sbjct: 94 TLTGLFKGDKCQSLVGKPKIFIIQACRGNQHDVPVLPLDVVDHQTDKLDANLTQVDAASV 153
Query: 619 QKIPVEADFLYAYSTAPGYYSWR 687
+P ADFL YS A GYYS R
Sbjct: 154 YTLPAGADFLMCYSVAEGYYSHR 176
Score = 58.5 bits (140), Expect(2) = 3e-35
Identities = 31/70 (44%), Positives = 39/70 (55%)
Frame = +3
Query: 696 DGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
+GSW+IQ LC L ++ LE +LT VN KV+ F D KKQ+PC SMLT
Sbjct: 180 NGSWYIQDLCEMLGKFGSSLEFTELLTLVNRKVSQRRVDFCKDPDAIGKKQVPCFASMLT 239
Query: 876 KNSIFLSPKN 905
K F PK+
Sbjct: 240 KKLHFF-PKS 248
>ref|NP_001026949.2| caspase-8 [Sus scrofa].
Length = 486
Score = 127 bits (320), Expect(2) = 8e-35
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 17/202 (8%)
Frame = +1
Query: 133 GSKSVDSGISLDVSYKMDYPEMGLCIIINN-------KNFDKNTGMACRSGTDVDAANLR 291
G + DS S + Y+M G C+I NN KN + + R+GTD+DAA L
Sbjct: 220 GEQDSDSEAS-EAVYRMKSKPRGYCLIFNNYDFSVARKNIARLHNIKDRNGTDLDAAALS 278
Query: 292 ETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PV 468
+TF++L +EVR D+T +EI +++ DH+ + F+C +LSHG++G I+G++G
Sbjct: 279 KTFSDLHFEVRPYKDVTAKEICDVLEYYRNLDHNDKDCFVCCILSHGDKGIIYGSDGREA 338
Query: 469 DLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGI-------ETDSGTEDDMACQK- 624
+ LTS+F G C +L GKPK+F IQAC+G + GI +T++ E D + QK
Sbjct: 339 PIYDLTSYFTGSKCPSLLGKPKIFFIQACQGDKYQKGIAIETDSEQTEAYLEMDSSLQKR 398
Query: 625 -IPVEADFLYAYSTAPGYYSWR 687
IP EADFL +T S+R
Sbjct: 399 YIPDEADFLLGMATVNNCVSYR 420
Score = 37.7 bits (86), Expect(2) = 8e-35
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
++ +G+W+IQSLC +LK+ + E ++ ILT+VN FE + D + KQ+P
Sbjct: 421 STMEGTWYIQSLCQSLKERCPRGEDILTILTKVN------FEVSNKDDKKNMGKQMPQPT 474
Query: 864 SMLTKNSIF 890
L K F
Sbjct: 475 FTLRKKLFF 483
>ref|NP_001155112.1| caspase-10 [Sus scrofa].
Length = 520
Score = 106 bits (265), Expect(2) = 2e-27
Identities = 64/178 (35%), Positives = 96/178 (53%), Gaps = 7/178 (3%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
Y+MD G C+++NN F T M+ R GT DA LR F L + V D+T+ +
Sbjct: 270 YRMDRNHRGFCVVVNNHRF---TSMSERPGTHKDAECLRRVFEWLGFSVHVYVDVTKVHL 326
Query: 355 LELMHSV-SKEDHSKRSSFICVLLSHGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGK 528
++++ S H+ F+ +L+HGE G I+ ++G + ++++ S F C L K
Sbjct: 327 MQVLQKYQSHPGHADGDCFVFCVLTHGEFGAIYSSDGDLIPIREILSHFTAQQCPGLAHK 386
Query: 529 PKLFIIQACRGTEL--DCGIETDSGTED---DMACQKIPVEADFLYAYSTAPGYYSWR 687
PKLF IQAC+G E+ IE D+ + + IPVEADFL +T PGY S+R
Sbjct: 387 PKLFFIQACQGEEIQPSVSIEADAVNPELKAPLLKDSIPVEADFLLGLATVPGYVSFR 444
Score = 33.9 bits (76), Expect(2) = 2e-27
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 693 KDGSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSM 869
K+GSW+IQSL LK + E ++ ILT VN V+ + + +KKQ+P
Sbjct: 447 KEGSWYIQSLYNHLKDLVPRREDILSILTAVNNDVSRQVDKRG------SKKQMPQPAFT 500
Query: 870 LTKNSIFL 893
L K S L
Sbjct: 501 LRKKSYSL 508
>ref|XP_003127667.1| PREDICTED: caspase-9-like isoform 2 [Sus scrofa].
Length = 438
Score = 118 bits (296), Expect = 4e-27
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 32/220 (14%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF +G+ R+G+++D ++ F L + V K +LT
Sbjct: 173 DLAYVLNADPCGHCLIINNVNFCHESGLRKRTGSNIDCERMQRRFHLLHFVVDVKCNLTA 232
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + +++ DH + V+LSHG + G ++GT+G PV ++K+ + F G
Sbjct: 233 KQMVQALVELARRDHGALDCCVVVVLSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNG 292
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G E S + +D
Sbjct: 293 TSCPSLGGKPKLFFIQACGGEQKDHGFEVASPSPEDRTADSNPEPDAAPFQEGPGAVDQP 352
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
A +P +D L +YST PG+ SWR D S S +++
Sbjct: 353 DAVSSLPTPSDILVSYSTFPGFVSWR----DTTSGSWYIE 388
>ref|XP_003127666.1| PREDICTED: caspase-9-like isoform 1 [Sus scrofa].
Length = 438
Score = 118 bits (296), Expect = 4e-27
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 32/220 (14%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y ++ G C+IINN NF +G+ R+G+++D ++ F L + V K +LT
Sbjct: 173 DLAYVLNADPCGHCLIINNVNFCHESGLRKRTGSNIDCERMQRRFHLLHFVVDVKCNLTA 232
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
+++++ + +++ DH + V+LSHG + G ++GT+G PV ++K+ + F G
Sbjct: 233 KQMVQALVELARRDHGALDCCVVVVLSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNG 292
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIETDSGTEDDM----------------------- 612
C +L GKPKLF IQAC G + D G E S + +D
Sbjct: 293 TSCPSLGGKPKLFFIQACGGEQKDHGFEVASPSPEDRTADSNPEPDAAPFQEGPGAVDQP 352
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
A +P +D L +YST PG+ SWR D S S +++
Sbjct: 353 DAVSSLPTPSDILVSYSTFPGFVSWR----DTTSGSWYIE 388
>ref|XP_003359654.1| PREDICTED: caspase-8-like [Sus scrofa].
Length = 361
Score = 100 bits (250), Expect(2) = 8e-27
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 10/146 (6%)
Frame = +1
Query: 280 ANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTN 459
A L +TF++L +EVR D+T + I +++ DH+ + F+C +LSHG++G I+G++
Sbjct: 150 AALSKTFSDLHFEVRPYKDVTAKGICDVLEYYRNLDHNDKDCFVCCILSHGDKGIIYGSD 209
Query: 460 G-PVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGI-------ETDSGTEDDMA 615
G + LTS+F G C +L GKPK+F IQAC+G + GI +T++ E D +
Sbjct: 210 GREAPIYDLTSYFTGSKCPSLLGKPKIFFIQACQGDKYQKGIAIETDSEQTEAYLEMDSS 269
Query: 616 CQK--IPVEADFLYAYSTAPGYYSWR 687
QK IP EADFL +T S+R
Sbjct: 270 LQKRYIPDEADFLLGMATVNNCVSYR 295
Score = 37.7 bits (86), Expect(2) = 8e-27
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHKLE-LMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
++ +G+W+IQSLC +LK+ + E ++ ILT+VN FE + D + KQ+P
Sbjct: 296 STMEGTWYIQSLCQSLKERCPRGEDILTILTKVN------FEVSNKDDKKNMGKQMPQPT 349
Query: 864 SMLTKNSIF 890
L K F
Sbjct: 350 FTLRKKLFF 358
>ref|XP_003134619.1| PREDICTED: caspase-2-like isoform 1 [Sus scrofa].
Length = 452
Score = 90.5 bits (223), Expect(2) = 3e-23
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Frame = +1
Query: 169 VSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTRE 348
++Y++ GL ++++N +F + RSG DVD + L F L Y+V D T +
Sbjct: 190 LAYRLQSRPRGLALVLSNVHFTGEKDLEFRSGGDVDHSTLVALFKLLGYQVHVLLDQTAQ 249
Query: 349 EILELMHSVSK-EDHSKRSSFICVLLSHGEEGKIFGTNGPV-DLKKLTSFFRGDCCRTLT 522
E+ E + ++ H S I LLSHG EG ++G +G + L+++ F C +L
Sbjct: 250 EMQEKLQDFAQLPTHRVTDSCIVALLSHGVEGGVYGVDGKLLQLQEVFQLFDNANCPSLQ 309
Query: 523 GKPKLFIIQACRGTELDCGI---------------ETDSGTEDDMACQKIPVEADFLYAY 657
KPK+F IQACRG E D G+ E+D+G E ++ ++P +D + Y
Sbjct: 310 NKPKMFFIQACRGDETDRGVDQQDGKNHARSPECEESDAGKE-ELLKMRLPTRSDMICGY 368
Query: 658 STAPGYYSWR 687
+ G + R
Sbjct: 369 ACLRGTAAMR 378
Score = 36.2 bits (82), Expect(2) = 3e-23
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 681 LANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCI 860
+ N+K GSW+I++L + A + + +L RVN + E E ++ + FH K++
Sbjct: 377 MRNTKRGSWYIEALTQVFSERACDMHVADMLVRVNALIK-EREGYAPGTEFHRCKEMSEY 435
Query: 861 VSMLTKNSIFLSP 899
S L + ++L P
Sbjct: 436 CSTLCRR-LYLFP 447
>ref|XP_003123478.1| PREDICTED: caspase-14-like [Sus scrofa].
Length = 242
Score = 79.7 bits (195), Expect = 2e-15
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Frame = +1
Query: 256 RSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC---VLLS 426
R G+ D L F L++E K D T ++ E + + ++ C VL++
Sbjct: 29 REGSQADLDALESMFQQLRFESTMKKDPTAQQFYEELEKFQQAIDAREDFVSCAFVVLMA 88
Query: 427 HGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
HG EG++ G +G VDL+ L CR L +PK++I+QACRG + D G G E
Sbjct: 89 HGLEGRLKGEDGKMVDLEDLFQVLNNKNCRGLRARPKVYIVQACRGEQRDPG--EPIGGE 146
Query: 604 DDMACQK-----IPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
D + K IP D L+ YST GY ++R + S+F+Q
Sbjct: 147 DLVMIAKSSPETIPTYTDTLHVYSTVEGYIAYRHDQ----EGSYFIQ 189
>ref|NP_001032224.1| caspase-15 [Sus scrofa].
Length = 368
Score = 74.3 bits (181), Expect = 1e-13
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Frame = +1
Query: 256 RSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC---VLLS 426
R G + D + E +E D + E+LE + S + + C L+S
Sbjct: 155 RPGAEQDIQWMEEWLDQCHFERTLCIDPNKMELLEKIRSFRDGLNEIKDGVGCCLVTLMS 214
Query: 427 HGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSG-- 597
HGEEG + NG V L+ + F C L KPK+FIIQACRG D G+ETD
Sbjct: 215 HGEEGFLKMNNGEKVSLEGIFEMFNNKNCPALHEKPKIFIIQACRGERRDIGVETDDEPM 274
Query: 598 TEDDMACQKIPVEADFLYAYSTAPGYYSWRIPRT 699
DD++ +++P +D+ Y T + + R P T
Sbjct: 275 DSDDVSEKRLPTFSDYFIIYPTRAAHVALRDPHT 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,861,023
Number of extensions: 566578
Number of successful extensions: 1305
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1281
Number of HSP's successfully gapped: 20
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033940.1| caspase-3 [Mus musculus]. 365 e-101
Alignment gi|NP_031637.1| caspase-7 precursor [Mus musculus]. 212 3e-55
Alignment gi|NP_033941.3| caspase-6 precursor [Mus musculus]. 138 1e-44
Alignment gi|NP_001073595.1| caspase-8 precursor [Mus musculus]. 128 6e-30
Alignment gi|NP_033942.1| caspase-8 precursor [Mus musculus]. 128 6e-30
Alignment gi|NP_056548.2| caspase-9 [Mus musculus]. 124 9e-29
Alignment gi|NP_031636.1| caspase-2 [Mus musculus]. 92 4e-23
Alignment gi|NP_033939.1| caspase-14 precursor [Mus musculus]. 82 6e-16
Alignment gi|NP_033938.3| caspase-12 precursor [Mus musculus]. 79 4e-15
Alignment gi|NP_033937.2| caspase-1 [Mus musculus]. 66 1e-12
>ref|NP_033940.1| caspase-3 [Mus musculus].
Length = 277
Score = 365 bits (938), Expect = e-101
Identities = 175/207 (84%), Positives = 190/207 (91%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M N K SVDSKSI E K +HGSKSVDSGI LD SYKMDYPEMG+CIIINNKNF K+TG
Sbjct: 1 MENNKTSVDSKSINNFEVKTIHGSKSVDSGIYLDSSYKMDYPEMGICIIINNKNFHKSTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
M+ RSGTDVDAANLRETF LKY+VRNKNDLTRE+ILELM SVSKEDHSKRSSF+CV+LS
Sbjct: 61 MSSRSGTDVDAANLRETFMGLKYQVRNKNDLTREDILELMDSVSKEDHSKRSSFVCVILS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HG+EG I+GTNGPV+LKKLTSFFRGD CR+LTGKPKLFIIQACRGTELDCGIETDSGT++
Sbjct: 121 HGDEGVIYGTNGPVELKKLTSFFRGDYCRSLTGKPKLFIIQACRGTELDCGIETDSGTDE 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
+MACQKIPVEADFLYAYSTAPGYYSWR
Sbjct: 181 EMACQKIPVEADFLYAYSTAPGYYSWR 207
Score = 119 bits (298), Expect = 4e-27
Identities = 60/77 (77%), Positives = 62/77 (80%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W NSKDGSWFIQSLC+ LK YAHKLE MHILTRVN KVA EFESFS DSTFHA
Sbjct: 203 YYSW----RNSKDGSWFIQSLCSMLKLYAHKLEFMHILTRVNRKVATEFESFSLDSTFHA 258
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPCIVSMLTK F
Sbjct: 259 KKQIPCIVSMLTKELYF 275
>ref|NP_031637.1| caspase-7 precursor [Mus musculus].
Length = 303
Score = 212 bits (540), Expect = 3e-55
Identities = 109/188 (57%), Positives = 132/188 (70%), Gaps = 3/188 (1%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
Y+MD+ +MG CIIINNKNFDK TGM R+GTD DA L + F NL +EV ND + ++
Sbjct: 60 YRMDFQKMGKCIIINNKNFDKATGMDVRNGTDKDAGALFKCFQNLGFEVTVHNDCSCAKM 119
Query: 355 LELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPK 534
+L+ S+EDHS + F CVLLSHGEE I+G +G +K LT+ FRGD C+TL KPK
Sbjct: 120 QDLLRKASEEDHSNSACFACVLLSHGEEDLIYGKDGVTPIKDLTAHFRGDRCKTLLEKPK 179
Query: 535 LFIIQACRGTELDCGIETDSGTEDDMAC---QKIPVEADFLYAYSTAPGYYSWRIPRTDP 705
LF IQACRGTELD GI+ DSG +D+ KIPVEADFL+AYST PGYYSWR +P
Sbjct: 180 LFFIQACRGTELDDGIQADSGPINDIDANPRNKIPVEADFLFAYSTVPGYYSWR----NP 235
Query: 706 GSSSHFVQ 729
G S FVQ
Sbjct: 236 GKGSWFVQ 243
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/77 (53%), Positives = 51/77 (66%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W N GSWF+Q+LC+ L ++ LE+M ILTRVN +VA FES S D F+
Sbjct: 229 YYSW----RNPGKGSWFVQALCSILNEHGKDLEIMQILTRVNDRVARHFESQSDDPRFNE 284
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPC+VSMLTK F
Sbjct: 285 KKQIPCMVSMLTKELYF 301
>ref|NP_033941.3| caspase-6 precursor [Mus musculus].
Length = 276
Score = 138 bits (348), Expect(2) = 1e-44
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 12/183 (6%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
YKMD+ G+ +I N++ F + + R GT+ D NL F++L +EV+ NDL EE+
Sbjct: 20 YKMDHKRRGVALIFNHERFFWHLTLPERRGTNADRDNLTRRFSDLGFEVKCFNDLRAEEL 79
Query: 355 LELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPK 534
L +H VS H FICV LSHGE ++ + ++++ LT F+GD C++L GKPK
Sbjct: 80 LLKIHEVSTSSHIDADCFICVFLSHGEGNHVYAYDAKIEIQTLTGLFKGDKCQSLVGKPK 139
Query: 535 LFIIQACRGTELDCGI-----------ETDSGTEDDMA-CQKIPVEADFLYAYSTAPGYY 678
+FIIQACRG++ D + + D+ T+ D A +P ADFL YS A GYY
Sbjct: 140 IFIIQACRGSQHDVPVVPLDMVDHQTDKLDNVTQVDAASVYTLPAGADFLMCYSVAEGYY 199
Query: 679 SWR 687
S R
Sbjct: 200 SHR 202
Score = 60.1 bits (144), Expect(2) = 1e-44
Identities = 30/65 (46%), Positives = 36/65 (55%)
Frame = +3
Query: 696 DGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
+GSW+IQ LC L +Y LE +LT VN KV+ F D KKQ+PC SMLT
Sbjct: 206 NGSWYIQDLCEMLARYGSSLEFTELLTLVNRKVSQRRVDFCKDPDAIGKKQVPCFASMLT 265
Query: 876 KNSIF 890
K F
Sbjct: 266 KKLHF 270
>ref|NP_001073595.1| caspase-8 precursor [Mus musculus].
Length = 480
Score = 128 bits (322), Expect = 6e-30
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 17/231 (7%)
Frame = +1
Query: 88 VDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG------- 246
+D S+K E + +S S D Y+M G C+IINN +F K
Sbjct: 200 LDEMSLKMAELCDSPREQDSESRTS-DKVYQMKNKPRGYCLIINNHDFSKAREDITQLRK 258
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
M R GTD D L +TF L +E+ + +D T EI E++ DH + FIC +LS
Sbjct: 259 MKDRKGTDCDKEALSKTFKELHFEIVSYDDCTANEIHEILEGYQSADHKNKDCFICCILS 318
Query: 427 HGEEGKIFGTNG-PVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
HG++G ++GT+G + LTS+F G C +L+GKPK+F IQAC+G+ G+ ++G E
Sbjct: 319 HGDKGVVYGTDGKEASIYDLTSYFTGSKCPSLSGKPKIFFIQACQGSNFQKGVPDEAGFE 378
Query: 604 D-------DMACQK--IPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
D + K IP EADFL +T S+R DP + + ++Q
Sbjct: 379 QQNHTLEVDSSSHKNYIPDEADFLLGMATVKNCVSYR----DPVNGTWYIQ 425
>ref|NP_033942.1| caspase-8 precursor [Mus musculus].
Length = 480
Score = 128 bits (322), Expect = 6e-30
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 17/231 (7%)
Frame = +1
Query: 88 VDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG------- 246
+D S+K E + +S S D Y+M G C+IINN +F K
Sbjct: 200 LDEMSLKMAELCDSPREQDSESRTS-DKVYQMKNKPRGYCLIINNHDFSKAREDITQLRK 258
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
M R GTD D L +TF L +E+ + +D T EI E++ DH + FIC +LS
Sbjct: 259 MKDRKGTDCDKEALSKTFKELHFEIVSYDDCTANEIHEILEGYQSADHKNKDCFICCILS 318
Query: 427 HGEEGKIFGTNG-PVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
HG++G ++GT+G + LTS+F G C +L+GKPK+F IQAC+G+ G+ ++G E
Sbjct: 319 HGDKGVVYGTDGKEASIYDLTSYFTGSKCPSLSGKPKIFFIQACQGSNFQKGVPDEAGFE 378
Query: 604 D-------DMACQK--IPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
D + K IP EADFL +T S+R DP + + ++Q
Sbjct: 379 QQNHTLEVDSSSHKNYIPDEADFLLGMATVKNCVSYR----DPVNGTWYIQ 425
>ref|NP_056548.2| caspase-9 [Mus musculus].
Length = 454
Score = 124 bits (312), Expect = 9e-29
Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 32/220 (14%)
Frame = +1
Query: 166 DVSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTR 345
D++Y +D G C+IINN NF ++G+ R+G+++D L F L++ V KNDLT
Sbjct: 188 DMAYTLDSDPCGHCLIINNVNFCPSSGLGTRTGSNLDRDKLEHRFRWLRFMVEVKNDLTA 247
Query: 346 EEILELMHSVSKEDHSKRSSFICVLLSHGEE-------GKIFGTNG-PVDLKKLTSFFRG 501
++++ + ++ +H F+ V+LSHG + G ++GT+G V ++K+ + F G
Sbjct: 248 KKMVTALMEMAHRNHRALDCFVVVILSHGCQASHLQFPGAVYGTDGCSVSIEKIVNIFNG 307
Query: 502 DCCRTLTGKPKLFIIQACRGTELDCGIET----------DSGTEDDM------------- 612
C +L GKPKLF IQAC G + D G E DS +E D
Sbjct: 308 SGCPSLGGKPKLFFIQACGGEQKDHGFEVACTSSQGRTLDSDSEPDAVPYQEGPRPLDQL 367
Query: 613 -ACQKIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
A +P +D L +YST PG+ SWR D S S +++
Sbjct: 368 DAVSSLPTPSDILVSYSTFPGFVSWR----DKKSGSWYIE 403
>ref|NP_031636.1| caspase-2 [Mus musculus].
Length = 452
Score = 92.0 bits (227), Expect(2) = 4e-23
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Frame = +1
Query: 169 VSYKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTRE 348
++Y++ GL ++++N +F + RSG DVD L F L Y V +D T +
Sbjct: 190 LAYRLQSQPRGLALVLSNVHFTGEKDLEFRSGGDVDHTTLVTLFKLLGYNVHVLHDQTAQ 249
Query: 349 EILELMHSVSK-EDHSKRSSFICVLLSHGEEGKIFGTNGPV-DLKKLTSFFRGDCCRTLT 522
E+ E + + ++ H S + LLSHG EG I+G +G + L+++ F C +L
Sbjct: 250 EMQEKLQNFAQLPAHRVTDSCVVALLSHGVEGGIYGVDGKLLQLQEVFRLFDNANCPSLQ 309
Query: 523 GKPKLFIIQACRGTELDCGI---------------ETDSGTEDDMACQKIPVEADFLYAY 657
KPK+F IQACRG E D G+ E+D+G E+ M ++P +D + Y
Sbjct: 310 NKPKMFFIQACRGDETDRGVDQQDGKNHTQSPGCEESDAGKEELMK-MRLPTRSDMICGY 368
Query: 658 STAPGYYSWR 687
+ G + R
Sbjct: 369 ACLKGNAAMR 378
Score = 34.7 bits (78), Expect(2) = 4e-23
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 681 LANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCI 860
+ N+K GSW+I++L + A + + +L +VN + E E ++ + FH K++
Sbjct: 377 MRNTKRGSWYIEALTQVFSERACDMHVADMLVKVNALIK-EREGYAPGTEFHRCKEMSEY 435
Query: 861 VSMLTKNSIFLSP 899
S L + ++L P
Sbjct: 436 CSTLCQ-QLYLFP 447
>ref|NP_033939.1| caspase-14 precursor [Mus musculus].
Length = 257
Score = 82.0 bits (201), Expect = 6e-16
Identities = 57/162 (35%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Frame = +1
Query: 256 RSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFIC---VLLS 426
R G++VD L F LK+E K D T ++ LE + + + C VL++
Sbjct: 33 REGSEVDMEALERMFRYLKFESTMKRDPTAQQFLEELDEFQQTIDNWEEPVSCAFVVLMA 92
Query: 427 HGEEGKIFGTNGP-VDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
HGEEG + G + V L+ L C+ L GKPK++IIQACRG D G E E
Sbjct: 93 HGEEGLLKGEDEKMVRLEDLFEVLNNKNCKALRGKPKVYIIQACRGEHRDPGEELRGNEE 152
Query: 604 ---------DDMAC-----QKIPVEADFLYAYSTAPGYYSWR 687
D++A Q IP D L+ YST GY S+R
Sbjct: 153 LGGDEELGGDEVAVLKNNPQSIPTYTDTLHIYSTVEGYLSYR 194
>ref|NP_033938.3| caspase-12 precursor [Mus musculus].
Length = 419
Score = 79.3 bits (194), Expect = 4e-15
Identities = 64/187 (34%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Frame = +1
Query: 202 LCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI-LELMHSVS 378
L +II NK FD + R D D N++E NL Y V K +LT +E+ ELM
Sbjct: 177 LALIICNKKFDY---LFDRDNADTDILNMQELLENLGYSVVLKENLTAQEMETELMQFAG 233
Query: 379 KEDHSKRSSFICVLLSHGEEGKIFGTNG----PVDLKKLTSF--FRGDCCRTLTGKPKLF 540
+ +H S V +SHG I G P L T F F CR+L KPK+
Sbjct: 234 RPEHQSSDSTFLVFMSHGILEGICGVKHRNKKPDVLHDDTIFKIFNNSNCRSLRNKPKIL 293
Query: 541 IIQACRG-------TELDCGIET-DSGTEDDMACQ------KIPVEADFLYAYSTAPGYY 678
I+QACRG + GI T D+ E ++C+ K VE DF+ S+ P
Sbjct: 294 IMQACRGRYNGTIWVSTNKGIATADTDEERVLSCKWNNSITKAHVETDFIAFKSSTPHNI 353
Query: 679 SWRIPRT 699
SW++ +T
Sbjct: 354 SWKVGKT 360
>ref|NP_033937.2| caspase-1 [Mus musculus].
Length = 402
Score = 66.2 bits (160), Expect(2) = 1e-12
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = +1
Query: 202 LCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEIL-ELMHSVS 378
L +II N F ++ R G VD ++ +L Y V+ K +LT E++ E+ +
Sbjct: 163 LALIICNTEFQH---LSPRVGAQVDLREMKLLLEDLGYTVKVKENLTALEMVKEVKEFAA 219
Query: 379 KEDHSKRSSFICVLLSHGEEGKIFGT---NGPVDLKKLTSFFRGDC---CRTLTGKPKLF 540
+H S V +SHG + I GT N D+ K+ + F+ C +L KPK+
Sbjct: 220 CPEHKTSDSTFLVFMSHGIQEGICGTTYSNEVSDILKVDTIFQMMNTLKCPSLKDKPKVI 279
Query: 541 IIQACRGTELDCGIETDSGTE-----------DDMACQKIPVEADFLYAYSTAPGYYSWR 687
IIQACRG + + DS + +D +K +E DF+ S+ P SWR
Sbjct: 280 IIQACRGEKQGVVLLKDSVRDSEEDFLTDAIFEDDGIKKAHIEKDFIAFCSSTPDNVSWR 339
Query: 688 IP 693
P
Sbjct: 340 HP 341
Score = 25.0 bits (53), Expect(2) = 1e-12
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLELMHILTRV 782
GS FI+SL +K+YA +L I +V
Sbjct: 344 GSLFIESLIKHMKEYAWSCDLEDIFRKV 371
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,549,985
Number of extensions: 793043
Number of successful extensions: 1856
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1831
Number of HSP's successfully gapped: 17
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116786.1| caspase-3 preproprotein [Homo sapiens]. 376 e-104
Alignment gi|NP_004337.2| caspase-3 preproprotein [Homo sapiens]. 376 e-104
Alignment gi|NP_203124.1| caspase-7 isoform delta [Homo sapiens]. 204 1e-52
Alignment gi|NP_203125.1| caspase-7 isoform alpha [Homo sapiens]. 204 1e-52
Alignment gi|NP_001218.1| caspase-7 isoform alpha precursor [Homo sapiens]. 204 1e-52
Alignment gi|NP_001217.2| caspase-6 isoform alpha preproprotein [Homo sap... 136 2e-44
Alignment gi|NP_001073594.1| caspase-8 isoform G precursor [Homo sapiens]. 123 9e-33
Alignment gi|NP_001219.2| caspase-8 isoform A precursor [Homo sapiens]. 123 9e-33
Alignment gi|NP_203519.1| caspase-8 isoform B precursor [Homo sapiens]. 123 9e-33
Alignment gi|NP_001073593.1| caspase-8 isoform C precursor [Homo sapiens]. 123 9e-33
>ref|NP_116786.1| caspase-3 preproprotein [Homo sapiens].
Length = 277
Score = 376 bits (966), Expect = e-104
Identities = 182/207 (87%), Positives = 193/207 (93%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M NT+NSVDSKSIK LE KI+HGS+S+DSGISLD SYKMDYPEMGLCIIINNKNF K+TG
Sbjct: 1 MENTENSVDSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
M RSGTDVDAANLRETF NLKYEVRNKNDLTREEI+ELM VSKEDHSKRSSF+CVLLS
Sbjct: 61 MTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HGEEG IFGTNGPVDLKK+T+FFRGD CR+LTGKPKLFIIQACRGTELDCGIETDSG +D
Sbjct: 121 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVDD 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
DMAC KIPVEADFLYAYSTAPGYYSWR
Sbjct: 181 DMACHKIPVEADFLYAYSTAPGYYSWR 207
Score = 118 bits (295), Expect = 1e-26
Identities = 60/77 (77%), Positives = 62/77 (80%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W NSKDGSWFIQSLCA LKQYA KLE MHILTRVN KVA EFESFS D+TFHA
Sbjct: 203 YYSW----RNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHA 258
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPCIVSMLTK F
Sbjct: 259 KKQIPCIVSMLTKELYF 275
>ref|NP_004337.2| caspase-3 preproprotein [Homo sapiens].
Length = 277
Score = 376 bits (966), Expect = e-104
Identities = 182/207 (87%), Positives = 193/207 (93%)
Frame = +1
Query: 67 MANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNTG 246
M NT+NSVDSKSIK LE KI+HGS+S+DSGISLD SYKMDYPEMGLCIIINNKNF K+TG
Sbjct: 1 MENTENSVDSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTG 60
Query: 247 MACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLS 426
M RSGTDVDAANLRETF NLKYEVRNKNDLTREEI+ELM VSKEDHSKRSSF+CVLLS
Sbjct: 61 MTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 120
Query: 427 HGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED 606
HGEEG IFGTNGPVDLKK+T+FFRGD CR+LTGKPKLFIIQACRGTELDCGIETDSG +D
Sbjct: 121 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVDD 180
Query: 607 DMACQKIPVEADFLYAYSTAPGYYSWR 687
DMAC KIPVEADFLYAYSTAPGYYSWR
Sbjct: 181 DMACHKIPVEADFLYAYSTAPGYYSWR 207
Score = 118 bits (295), Expect = 1e-26
Identities = 60/77 (77%), Positives = 62/77 (80%)
Frame = +3
Query: 660 YSAWLLFLANSKDGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHA 839
Y +W NSKDGSWFIQSLCA LKQYA KLE MHILTRVN KVA EFESFS D+TFHA
Sbjct: 203 YYSW----RNSKDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHA 258
Query: 840 KKQIPCIVSMLTKNSIF 890
KKQIPCIVSMLTK F
Sbjct: 259 KKQIPCIVSMLTKELYF 275
>ref|NP_203124.1| caspase-7 isoform delta [Homo sapiens].
Length = 336
Score = 204 bits (518), Expect = 1e-52
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Frame = +1
Query: 64 LMANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNT 243
L + K +V +SIKT ++ Y M++ ++G CIIINNKNFDK T
Sbjct: 68 LFSKKKKNVTMRSIKTTRDRVP------------TYQYNMNFEKLGKCIIINNKNFDKVT 115
Query: 244 GMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLL 423
GM R+GTD DA L + F +L ++V ND + ++ +L+ S+EDH+ + F C+LL
Sbjct: 116 GMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILL 175
Query: 424 SHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
SHGEE I+G +G +K LT+ FRGD C+TL KPKLF IQACRGTELD GI+ DSG
Sbjct: 176 SHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPI 235
Query: 604 DDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
+D KIPVEADFL+AYST PGYYSWR PG S FVQ
Sbjct: 236 NDTDANPRYKIPVEADFLFAYSTVPGYYSWR----SPGRGSWFVQ 276
Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/64 (60%), Positives = 48/64 (75%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLTK 878
GSWF+Q+LC+ L+++ LE+M ILTRVN +VA FES S D FH KKQIPC+VSMLTK
Sbjct: 271 GSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTK 330
Query: 879 NSIF 890
F
Sbjct: 331 ELYF 334
>ref|NP_203125.1| caspase-7 isoform alpha [Homo sapiens].
Length = 303
Score = 204 bits (518), Expect = 1e-52
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Frame = +1
Query: 64 LMANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNT 243
L + K +V +SIKT ++ Y M++ ++G CIIINNKNFDK T
Sbjct: 35 LFSKKKKNVTMRSIKTTRDRVP------------TYQYNMNFEKLGKCIIINNKNFDKVT 82
Query: 244 GMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLL 423
GM R+GTD DA L + F +L ++V ND + ++ +L+ S+EDH+ + F C+LL
Sbjct: 83 GMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILL 142
Query: 424 SHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
SHGEE I+G +G +K LT+ FRGD C+TL KPKLF IQACRGTELD GI+ DSG
Sbjct: 143 SHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPI 202
Query: 604 DDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
+D KIPVEADFL+AYST PGYYSWR PG S FVQ
Sbjct: 203 NDTDANPRYKIPVEADFLFAYSTVPGYYSWR----SPGRGSWFVQ 243
Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/64 (60%), Positives = 48/64 (75%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLTK 878
GSWF+Q+LC+ L+++ LE+M ILTRVN +VA FES S D FH KKQIPC+VSMLTK
Sbjct: 238 GSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTK 297
Query: 879 NSIF 890
F
Sbjct: 298 ELYF 301
>ref|NP_001218.1| caspase-7 isoform alpha precursor [Homo sapiens].
Length = 303
Score = 204 bits (518), Expect = 1e-52
Identities = 110/225 (48%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Frame = +1
Query: 64 LMANTKNSVDSKSIKTLETKILHGSKSVDSGISLDVSYKMDYPEMGLCIIINNKNFDKNT 243
L + K +V +SIKT ++ Y M++ ++G CIIINNKNFDK T
Sbjct: 35 LFSKKKKNVTMRSIKTTRDRVP------------TYQYNMNFEKLGKCIIINNKNFDKVT 82
Query: 244 GMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEILELMHSVSKEDHSKRSSFICVLL 423
GM R+GTD DA L + F +L ++V ND + ++ +L+ S+EDH+ + F C+LL
Sbjct: 83 GMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILL 142
Query: 424 SHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTE 603
SHGEE I+G +G +K LT+ FRGD C+TL KPKLF IQACRGTELD GI+ DSG
Sbjct: 143 SHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPI 202
Query: 604 DDMACQ---KIPVEADFLYAYSTAPGYYSWRIPRTDPGSSSHFVQ 729
+D KIPVEADFL+AYST PGYYSWR PG S FVQ
Sbjct: 203 NDTDANPRYKIPVEADFLFAYSTVPGYYSWR----SPGRGSWFVQ 243
Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/64 (60%), Positives = 48/64 (75%)
Frame = +3
Query: 699 GSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLTK 878
GSWF+Q+LC+ L+++ LE+M ILTRVN +VA FES S D FH KKQIPC+VSMLTK
Sbjct: 238 GSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTK 297
Query: 879 NSIF 890
F
Sbjct: 298 ELYF 301
>ref|NP_001217.2| caspase-6 isoform alpha preproprotein [Homo sapiens].
Length = 293
Score = 136 bits (342), Expect(2) = 2e-44
Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 13/184 (7%)
Frame = +1
Query: 175 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 354
YKMD+ G+ +I N++ F + + R GT D NL F++L +EV+ NDL EE+
Sbjct: 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEEL 96
Query: 355 LELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNGPVDLKKLTSFFRGDCCRTLTGKPK 534
L +H VS H+ F+CV LSHGE I+ + ++++ LT F+GD C +L GKPK
Sbjct: 97 LLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPK 156
Query: 535 LFIIQACRGTELDCGI----ETDSGTE---------DDMACQKIPVEADFLYAYSTAPGY 675
+FIIQACRG + D + D+ TE D + +P ADFL YS A GY
Sbjct: 157 IFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGY 216
Query: 676 YSWR 687
YS R
Sbjct: 217 YSHR 220
Score = 62.0 bits (149), Expect(2) = 2e-44
Identities = 31/70 (44%), Positives = 38/70 (54%)
Frame = +3
Query: 696 DGSWFIQSLCAALKQYAHKLELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIVSMLT 875
+GSW+IQ LC L +Y LE +LT VN KV+ F D + KKQ+PC SMLT
Sbjct: 224 NGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLT 283
Query: 876 KNSIFLSPKN 905
K F N
Sbjct: 284 KKLHFFPKSN 293
>ref|NP_001073594.1| caspase-8 isoform G precursor [Homo sapiens].
Length = 538
Score = 123 bits (308), Expect(2) = 9e-33
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Frame = +1
Query: 160 SLDVSYKMDYPEMGLCIIINNKNFDKNT-------GMACRSGTDVDAANLRETFTNLKYE 318
+LD Y+M G C+IINN NF K + R+GT +DA L TF L +E
Sbjct: 280 TLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE 339
Query: 319 VRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PVDLKKLTSFF 495
++ +D T E+I E++ DHS FIC +LSHG++G I+GT+G + +LTS F
Sbjct: 340 IKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 399
Query: 496 RGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED------DMACQK---IPVEADFL 648
G C +L GKPK+F IQAC+G GI ++ +E+ D++ + IP EADFL
Sbjct: 400 TGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFL 459
Query: 649 YAYSTAPGYYSWRIP 693
+T S+R P
Sbjct: 460 LGMATVNNCVSYRNP 474
Score = 36.2 bits (82), Expect(2) = 9e-33
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHK-LELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC +L++ + +++ ILT VN +E + D + KQ+P
Sbjct: 473 NPAEGTWYIQSLCQSLRERCPRGDDILTILTEVN------YEVSNKDDKKNMGKQMPQPT 526
Query: 864 SMLTKNSIFLS 896
L K +F S
Sbjct: 527 FTLRKKLVFPS 537
>ref|NP_001219.2| caspase-8 isoform A precursor [Homo sapiens].
Length = 496
Score = 123 bits (308), Expect(2) = 9e-33
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Frame = +1
Query: 160 SLDVSYKMDYPEMGLCIIINNKNFDKNT-------GMACRSGTDVDAANLRETFTNLKYE 318
+LD Y+M G C+IINN NF K + R+GT +DA L TF L +E
Sbjct: 238 TLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE 297
Query: 319 VRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PVDLKKLTSFF 495
++ +D T E+I E++ DHS FIC +LSHG++G I+GT+G + +LTS F
Sbjct: 298 IKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 357
Query: 496 RGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED------DMACQK---IPVEADFL 648
G C +L GKPK+F IQAC+G GI ++ +E+ D++ + IP EADFL
Sbjct: 358 TGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFL 417
Query: 649 YAYSTAPGYYSWRIP 693
+T S+R P
Sbjct: 418 LGMATVNNCVSYRNP 432
Score = 36.2 bits (82), Expect(2) = 9e-33
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHK-LELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC +L++ + +++ ILT VN +E + D + KQ+P
Sbjct: 431 NPAEGTWYIQSLCQSLRERCPRGDDILTILTEVN------YEVSNKDDKKNMGKQMPQPT 484
Query: 864 SMLTKNSIFLS 896
L K +F S
Sbjct: 485 FTLRKKLVFPS 495
>ref|NP_203519.1| caspase-8 isoform B precursor [Homo sapiens].
Length = 479
Score = 123 bits (308), Expect(2) = 9e-33
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Frame = +1
Query: 160 SLDVSYKMDYPEMGLCIIINNKNFDKNT-------GMACRSGTDVDAANLRETFTNLKYE 318
+LD Y+M G C+IINN NF K + R+GT +DA L TF L +E
Sbjct: 221 TLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE 280
Query: 319 VRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PVDLKKLTSFF 495
++ +D T E+I E++ DHS FIC +LSHG++G I+GT+G + +LTS F
Sbjct: 281 IKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 340
Query: 496 RGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED------DMACQK---IPVEADFL 648
G C +L GKPK+F IQAC+G GI ++ +E+ D++ + IP EADFL
Sbjct: 341 TGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFL 400
Query: 649 YAYSTAPGYYSWRIP 693
+T S+R P
Sbjct: 401 LGMATVNNCVSYRNP 415
Score = 36.2 bits (82), Expect(2) = 9e-33
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHK-LELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC +L++ + +++ ILT VN +E + D + KQ+P
Sbjct: 414 NPAEGTWYIQSLCQSLRERCPRGDDILTILTEVN------YEVSNKDDKKNMGKQMPQPT 467
Query: 864 SMLTKNSIFLS 896
L K +F S
Sbjct: 468 FTLRKKLVFPS 478
>ref|NP_001073593.1| caspase-8 isoform C precursor [Homo sapiens].
Length = 464
Score = 123 bits (308), Expect(2) = 9e-33
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Frame = +1
Query: 160 SLDVSYKMDYPEMGLCIIINNKNFDKNT-------GMACRSGTDVDAANLRETFTNLKYE 318
+LD Y+M G C+IINN NF K + R+GT +DA L TF L +E
Sbjct: 206 TLDKVYQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFE 265
Query: 319 VRNKNDLTREEILELMHSVSKEDHSKRSSFICVLLSHGEEGKIFGTNG-PVDLKKLTSFF 495
++ +D T E+I E++ DHS FIC +LSHG++G I+GT+G + +LTS F
Sbjct: 266 IKPHDDCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQF 325
Query: 496 RGDCCRTLTGKPKLFIIQACRGTELDCGIETDSGTED------DMACQK---IPVEADFL 648
G C +L GKPK+F IQAC+G GI ++ +E+ D++ + IP EADFL
Sbjct: 326 TGLKCPSLAGKPKVFFIQACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFL 385
Query: 649 YAYSTAPGYYSWRIP 693
+T S+R P
Sbjct: 386 LGMATVNNCVSYRNP 400
Score = 36.2 bits (82), Expect(2) = 9e-33
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 687 NSKDGSWFIQSLCAALKQYAHK-LELMHILTRVNPKVAVEFESFSTDSTFHAKKQIPCIV 863
N +G+W+IQSLC +L++ + +++ ILT VN +E + D + KQ+P
Sbjct: 399 NPAEGTWYIQSLCQSLRERCPRGDDILTILTEVN------YEVSNKDDKKNMGKQMPQPT 452
Query: 864 SMLTKNSIFLS 896
L K +F S
Sbjct: 453 FTLRKKLVFPS 463
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,668,350
Number of extensions: 914665
Number of successful extensions: 2125
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 2053
Number of HSP's successfully gapped: 59
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014331
(990 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 353 1e-94
>Sscrofa_Chr15
|| Length = 157681621
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 373 gtttctaaagaagaccatagtaaaaggagcagttttatttgcgtgcttctaagccatggt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52298858 gtttctaaagaagaccatagtaaaaggagcagttttatttgcgtgcttctaagccatggt 52298917
Query: 433 gaagaaggaaaaatttttggaacaaatggacctgttgatctgaaaaaattaacaagtttc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52298918 gaagaaggaaaaatttttggaacaaatggacctgttgatctgaaaaaattaacaagtttc 52298977
Query: 493 ttcagaggggactgttgtagaactctaactggcaaacccaaacttttcataattcagg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52298978 ttcagaggggactgttgtagaactctaactggcaaacccaaacttttcataattcagg 52299035
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 244 ggaatggcatgtcgatctggtacagatgtggatgctgcaaatctcagggagaccttcaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52298398 ggaatggcatgtcgatctggtacagatgtggatgctgcaaatctcagggagaccttcaca 52298457
Query: 304 aacttgaaatatgaagtcaggaataaaaatgatcttacacgtgaagaaattttggagtta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52298458 aacttgaaatatgaagtcaggaataaaaatgatcttacacgtgaagaaattttggagtta 52298517
Query: 364 atgcacagtg 373
||||||||||
Sbjct: 52298518 atgcacagtg 52298527
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 120 aaagatcttacatggaagcaaatcagtggactctggaatatccttggatgtcagttacaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52293703 aaagatcttacatggaagcaaatcagtggactctggaatatccttggatgtcagttacaa 52293762
Query: 180 aatggattatcctgaaatgggtttatgtataataattaataataagaactttgataaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52293763 aatggattatcctgaaatgggtttatgtataataattaataataagaactttgataaaaa 52293822
Query: 240 taccgg 245
||||||
Sbjct: 52293823 taccgg 52293828
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 548 aggcctgccgaggcacagaattggactgtgggattgagacggacagtgggactgaagatg 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52299508 aggcctgccgaggcacagaattggactgtgggattgagacggacagtgggactgaagatg 52299567
Query: 608 acatggcgtgtcagaaaataccagttgaggcagacttcttgtatgcatattctacagcgc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52299568 acatggcgtgtcagaaaataccagttgaggcagacttcttgtatgcatattctacagcgc 52299627
Query: 668 ctggt 672
|||||
Sbjct: 52299628 ctggt 52299632
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 51 gttaatacacgtactcatggcgaacactaaaaactcagtggattcaaaatccattaaaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52291074 gttaatacacgtactcatggcgaacactaaaaactcagtggattcaaaatccattaaaac 52291133
Query: 111 tttggagac 119
|||||||||
Sbjct: 52291134 tttggagac 52291142
Score = 75.8 bits (38), Expect = 4e-11
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 135 aagcaaatcagtggactctggaatatccttggatgtcagtta 176
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 52292368 aagcaaatcaatggactctggaatatccttggatgtcagtta 52292409
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,533,532
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 6
Length of query: 990
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 969
Effective length of database: 2,808,413,156
Effective search space: 2721352348164
Effective search space used: 2721352348164
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)