Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531756.2| PREDICTED: similar to Periodic tryptophan prote... 410 e-114
>ref|XP_531756.2| PREDICTED: similar to Periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) [Canis familiaris].
Length = 500
Score = 410 bits (1053), Expect = e-114
Identities = 211/289 (73%), Positives = 215/289 (74%)
Frame = +1
Query: 175 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQXXXXXXXXXXXXXXXX 354
MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQ
Sbjct: 1 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSDEEETGDPSED 60
Query: 355 XMQSARTQARPREPLXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPDXXXXXXXXXXXXVY 534
MQSARTQARPREPL GDPD VY
Sbjct: 61 GMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDTETLGESLLGLTVY 120
Query: 535 GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD 714
GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD
Sbjct: 121 GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD 180
Query: 715 ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTXXXXXXXX 894
ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFT
Sbjct: 181 ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKK 240
Query: 895 XXXXXXXDASADGHTDAILDLLWNKLVRNVLGSASADNTVILWDMSLGK 1041
+SA+GHTDA+LDL WNKL+RNVL SASADNTVILWDMSLGK
Sbjct: 241 KKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASADNTVILWDMSLGK 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,491,108
Number of extensions: 847807
Number of successful extensions: 2753
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2751
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014332
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039631.1| periodic tryptophan protein 1 homolog [Bos t... 412 e-115
>ref|NP_001039631.1| periodic tryptophan protein 1 homolog [Bos taurus].
Length = 500
Score = 412 bits (1059), Expect = e-115
Identities = 213/289 (73%), Positives = 216/289 (74%)
Frame = +1
Query: 175 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQXXXXXXXXXXXXXXXX 354
MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQ
Sbjct: 1 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSDEQETGNPSED 60
Query: 355 XMQSARTQARPREPLXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPDXXXXXXXXXXXXVY 534
MQSARTQARPREPL GDPD VY
Sbjct: 61 GMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESLLGLTVY 120
Query: 535 GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD 714
GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD
Sbjct: 121 GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD 180
Query: 715 ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTXXXXXXXX 894
ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFT
Sbjct: 181 ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKK 240
Query: 895 XXXXXXXDASADGHTDAILDLLWNKLVRNVLGSASADNTVILWDMSLGK 1041
++SADGHTDA+LDL WNKLVRNVL SASADNTVILWDMSLGK
Sbjct: 241 KKKKGKKNSSADGHTDAVLDLSWNKLVRNVLASASADNTVILWDMSLGK 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,044,982
Number of extensions: 824546
Number of successful extensions: 2625
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2619
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126124.2| PREDICTED: periodic tryptophan protein 1 hom... 213 1e-55
>ref|XP_003126124.2| PREDICTED: periodic tryptophan protein 1 homolog, partial [Sus
scrofa].
Length = 333
Score = 213 bits (542), Expect = 1e-55
Identities = 105/122 (86%), Positives = 105/122 (86%)
Frame = +1
Query: 676 YNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSL 855
YNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSL
Sbjct: 1 YNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSL 60
Query: 856 EPVFTXXXXXXXXXXXXXXXDASADGHTDAILDLLWNKLVRNVLGSASADNTVILWDMSL 1035
EPVFT DASADGHTDAILDL WNKLVRNVL SASADNTVILWDMSL
Sbjct: 61 EPVFTLGSKLSKKKKKKGKKDASADGHTDAILDLSWNKLVRNVLASASADNTVILWDMSL 120
Query: 1036 GK 1041
GK
Sbjct: 121 GK 122
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,886,609
Number of extensions: 526239
Number of successful extensions: 1691
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1689
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598754.2| periodic tryptophan protein 1 homolog [Mus musc... 370 e-103
>ref|NP_598754.2| periodic tryptophan protein 1 homolog [Mus musculus].
Length = 501
Score = 370 bits (951), Expect = e-103
Identities = 193/289 (66%), Positives = 204/289 (70%)
Frame = +1
Query: 175 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQXXXXXXXXXXXXXXXX 354
MNRSRQVTCVAWVR GVAKETPDKVELSKEEV RLIAEAK KLQ
Sbjct: 1 MNRSRQVTCVAWVRRGVAKETPDKVELSKEEVNRLIAEAKGKLQEEGGSEEEEAGNPSED 60
Query: 355 XMQSARTQARPREPLXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPDXXXXXXXXXXXXVY 534
MQS TQA PRE L +PD VY
Sbjct: 61 GMQSGPTQAPPRESLEDGDPQDDRTLDDDELAGYDLDNYDEEDNPDAETIGESLLGLTVY 120
Query: 535 GSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHD 714
GSNDQDPYVTLKDTEQYE EDFLIKP+DNLIVCGRAEQ+QCNLEVHVYNQEE+SFYVHHD
Sbjct: 121 GSNDQDPYVTLKDTEQYEHEDFLIKPTDNLIVCGRAEQEQCNLEVHVYNQEEESFYVHHD 180
Query: 715 ILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTXXXXXXXX 894
ILLSAYPLSVEWLNFDPSPD STGNYIAVGNMTPVIEVWDLDIVDSLEPVFT
Sbjct: 181 ILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKK 240
Query: 895 XXXXXXXDASADGHTDAILDLLWNKLVRNVLGSASADNTVILWDMSLGK 1041
+SA+GHTDA+LDL WNK VRNVL SASAD+TV+LWD+S+GK
Sbjct: 241 KKKKGKKSSSAEGHTDAVLDLSWNKTVRNVLASASADSTVVLWDLSVGK 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,693,016
Number of extensions: 710177
Number of successful extensions: 2108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008993.1| periodic tryptophan protein 1 homolog [Homo sap... 405 e-113
>ref|NP_008993.1| periodic tryptophan protein 1 homolog [Homo sapiens].
Length = 501
Score = 405 bits (1041), Expect = e-113
Identities = 211/290 (72%), Positives = 215/290 (74%), Gaps = 1/290 (0%)
Frame = +1
Query: 175 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQXXXXXXXXXXXXXXXX 354
MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQ
Sbjct: 1 MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGGSDEEETGSPSE 60
Query: 355 X-MQSARTQARPREPLXXXXXXXXXXXXXXXXXXXXXXXXXXXGDPDXXXXXXXXXXXXV 531
MQSARTQARPREPL GDPD V
Sbjct: 61 DGMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDAETLGESLLGLTV 120
Query: 532 YGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHH 711
YGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHH
Sbjct: 121 YGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHH 180
Query: 712 DILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTXXXXXXX 891
DILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFT
Sbjct: 181 DILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSK 240
Query: 892 XXXXXXXXDASADGHTDAILDLLWNKLVRNVLGSASADNTVILWDMSLGK 1041
+SA+GHTDA+LDL WNKL+RNVL SASADNTVILWDMSLGK
Sbjct: 241 KKKKKGKKSSSAEGHTDAVLDLSWNKLIRNVLASASADNTVILWDMSLGK 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,917,179
Number of extensions: 840490
Number of successful extensions: 2756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014332
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 488 e-135
>Sscrofa_Chr05
|| Length = 111506441
Score = 488 bits (246), Expect = e-135
Identities = 246/246 (100%)
Strand = Plus / Minus
Query: 3 cacattcggcgcctgagagtgacgtcagacgcgggcgccgacggccctggagccagtgcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517518 cacattcggcgcctgagagtgacgtcagacgcgggcgccgacggccctggagccagtgcc 12517459
Query: 63 ccgcgcctgtgctctgcccaggtgtggtgcggcgcttgtctgaggggcgactgcgggact 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517458 ccgcgcctgtgctctgcccaggtgtggtgcggcgcttgtctgaggggcgactgcgggact 12517399
Query: 123 ctacacccgctgggtccaagtctagcaaaaaggtgtcgctgcgcagaagaccatgaaccg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517398 ctacacccgctgggtccaagtctagcaaaaaggtgtcgctgcgcagaagaccatgaaccg 12517339
Query: 183 cagccgccaggtgacgtgcgtggcctgggtccgctgcggcgtggccaaagagacgccaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12517338 cagccgccaggtgacgtgcgtggcctgggtccgctgcggcgtggccaaagagacgccaga 12517279
Query: 243 caaggt 248
||||||
Sbjct: 12517278 caaggt 12517273
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 306 agaggaaggcggcagtgatgaggaggagacaggcgatccttcagaggatggcatgcagag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513079 agaggaaggcggcagtgatgaggaggagacaggcgatccttcagaggatggcatgcagag 12513020
Query: 366 cgctcgtacccaggcccgaccacgggagcccctggaggatggtgacccagaggatgacag 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513019 cgctcgtacccaggcccgaccacgggagcccctggaggatggtgacccagaggatgacag 12512960
Query: 426 gacgctggatgatgatgagctggccgagtacgacctagataaatatgatgaggaaggcga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12512959 gacgctggatgatgatgagctggccgagtacgacctagataaatatgatgaggaaggcga 12512900
Query: 486 cccag 490
|||||
Sbjct: 12512899 cccag 12512895
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 673 gtttataatcaggaggaagattctttttacgtacaccatgatatcctgttgtcggcgtac 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12506971 gtttataatcaggaggaagattctttttacgtacaccatgatatcctgttgtcggcgtac 12506912
Query: 733 cctttgagtgtggaatggctgaatttcgatcccagcccagatgattcaactgg 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12506911 cctttgagtgtggaatggctgaatttcgatcccagcccagatgattcaactgg 12506859
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 784 ggaaattacattgctgtgggaaacatgacccctgtcattgaagtgtgggaccttgatata 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12505527 ggaaattacattgctgtgggaaacatgacccctgtcattgaagtgtgggaccttgatata 12505468
Query: 844 gtggactctttagagccagtcttcaccctcggaagtaagctgtc 887
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12505467 gtggactctttagagccagtcttcaccctcggaagtaagctgtc 12505424
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 576 ggaacagtacgaacgtgaagatttcttgattaagccaagtgacaatctcatagtttgtgg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12510875 ggaacagtacgaacgtgaagatttcttgattaagccaagtgacaatctcatagtttgtgg 12510816
Query: 636 cagagctgaacaggaccagtgcaatttagaggtgcatg 673
||||||||||||||||||||||||||||||||||||||
Sbjct: 12510815 cagagctgaacaggaccagtgcaatttagaggtgcatg 12510778
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 488 cagacactgaaactctcggtgaatctctcttgggtcttacagtctacgggagtaatgacc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12511061 cagacactgaaactctcggtgaatctctcttgggtcttacagtctacgggagtaatgacc 12511002
Query: 548 aagatccttacgttactctgaaagatacgg 577
||||||||||||||||||||||||||||||
Sbjct: 12511001 aagatccttacgttactctgaaagatacgg 12510972
Score = 123 bits (62), Expect = 2e-25
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 974 tcagaaatgtgctgggcagtgcatcagctgataacaccgtaatcctgtgggatatgtctc 1033
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12496103 tcagaaatgtgctggcaagtgcatcagctgataacaccgtaatcctgtgggatatgtctc 12496044
Query: 1034 tggggaagcc 1043
||||||||||
Sbjct: 12496043 tggggaagcc 12496034
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 245 aggtagagcttagtaaagaagaagtgaaacgtctcattgctgaagcaaaggaaaaattac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513269 aggtagagcttagtaaagaagaagtgaaacgtctcattgctgaagcaaaggaaaaattac 12513210
Query: 305 a 305
|
Sbjct: 12513209 a 12513209
Score = 99.6 bits (50), Expect = 3e-18
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 916 gatgcctcagcggacggtcacaccgatgctatccttgacctcctctggaataagctggtc 975
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 12504770 gatgcctcagcggacggtcacaccgatgctatccttgacctctcttggaataagctggtc 12504711
Query: 976 ag 977
||
Sbjct: 12504710 ag 12504709
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,164,798
Number of extensions: 106
Number of successful extensions: 106
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 9
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)