Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685665.1| PREDICTED: tubulointerstitial nephritis anti... 556 e-158
Alignment gi|XP_887401.3| PREDICTED: tubulointerstitial nephritis antigen... 556 e-158
Alignment gi|NP_001030279.1| tubulointerstitial nephritis antigen [Bos ta... 264 8e-71
Alignment gi|NP_776456.1| cathepsin B precursor [Bos taurus]. 77 3e-14
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 54 2e-07
Alignment gi|NP_001192237.1| von Willebrand factor [Bos taurus]. 49 5e-06
>ref|XP_002685665.1| PREDICTED: tubulointerstitial nephritis antigen-like 1-like [Bos
taurus].
Length = 534
Score = 556 bits (1432), Expect = e-158
Identities = 252/300 (84%), Positives = 258/300 (86%), Gaps = 2/300 (0%)
Frame = +1
Query: 85 GGTMWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HLRGIRDAGGRYCQEQDLCC 258
GGTMWR PLG H RGIRDAGGRYCQEQDLCC
Sbjct: 63 GGTMWRRPLGLLLLLLLLLAGELGVGARRGRRRRELAPALHRRGIRDAGGRYCQEQDLCC 122
Query: 259 RGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVL 438
RGRADDCALPYLG TCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMH+GRIYPVL
Sbjct: 123 RGRADDCALPYLGVTCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHKGRIYPVL 182
Query: 439 GTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIR 618
GTYWDNCNRCTC EK +WECDQEPCLVD DMI+AIN G+YGWRAGNHSAFWGMTLDEGIR
Sbjct: 183 GTYWDNCNRCTCHEKERWECDQEPCLVDEDMIEAINHGDYGWRAGNHSAFWGMTLDEGIR 242
Query: 619 YRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTA 798
YRLGT+RPSS VANMNEIHTVLGPGEVLPR FEASEKWPNLIHDPLDQGNCAGSWAFSTA
Sbjct: 243 YRLGTVRPSSFVANMNEIHTVLGPGEVLPRTFEASEKWPNLIHDPLDQGNCAGSWAFSTA 302
Query: 799 AVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCYPF 978
AVASDRVSIHSLGHM+PVLSPQNLLSCDTHNQQGC GRLDGAWWFLRR GVVSDHCYPF
Sbjct: 303 AVASDRVSIHSLGHMSPVLSPQNLLSCDTHNQQGCRGGRLDGAWWFLRRRGVVSDHCYPF 362
>ref|XP_887401.3| PREDICTED: tubulointerstitial nephritis antigen-like 1 isoform 2
[Bos taurus].
Length = 534
Score = 556 bits (1432), Expect = e-158
Identities = 252/300 (84%), Positives = 258/300 (86%), Gaps = 2/300 (0%)
Frame = +1
Query: 85 GGTMWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HLRGIRDAGGRYCQEQDLCC 258
GGTMWR PLG H RGIRDAGGRYCQEQDLCC
Sbjct: 63 GGTMWRRPLGLLLLLLLLLAGELGVGARRGRRRRELAPALHRRGIRDAGGRYCQEQDLCC 122
Query: 259 RGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVL 438
RGRADDCALPYLG TCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMH+GRIYPVL
Sbjct: 123 RGRADDCALPYLGVTCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHKGRIYPVL 182
Query: 439 GTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIR 618
GTYWDNCNRCTC EK +WECDQEPCLVD DMI+AIN G+YGWRAGNHSAFWGMTLDEGIR
Sbjct: 183 GTYWDNCNRCTCHEKERWECDQEPCLVDEDMIEAINHGDYGWRAGNHSAFWGMTLDEGIR 242
Query: 619 YRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTA 798
YRLGT+RPSS VANMNEIHTVLGPGEVLPR FEASEKWPNLIHDPLDQGNCAGSWAFSTA
Sbjct: 243 YRLGTVRPSSFVANMNEIHTVLGPGEVLPRTFEASEKWPNLIHDPLDQGNCAGSWAFSTA 302
Query: 799 AVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCYPF 978
AVASDRVSIHSLGHM+PVLSPQNLLSCDTHNQQGC GRLDGAWWFLRR GVVSDHCYPF
Sbjct: 303 AVASDRVSIHSLGHMSPVLSPQNLLSCDTHNQQGCRGGRLDGAWWFLRRRGVVSDHCYPF 362
>ref|NP_001030279.1| tubulointerstitial nephritis antigen [Bos taurus].
Length = 476
Score = 264 bits (675), Expect = 8e-71
Identities = 130/258 (50%), Positives = 162/258 (62%), Gaps = 8/258 (3%)
Frame = +1
Query: 226 GRYCQEQDLCCRGRADDCALPYL--GATCYCDLFCNRTVSDCCPDFWDFCL---GVPP-- 384
G+YC+ CC R D C + A CYCD FC R SDCCPD+ FC G PP
Sbjct: 54 GQYCRRFG-CCADRDDGCVTQFYEADALCYCDKFCERENSDCCPDYKSFCREEKGWPPRT 112
Query: 385 -PFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYG 561
P+ P +GC G+ Y +NCN CTC + QW+C Q CLV P +I+ +N+G+YG
Sbjct: 113 KPWSP-EGCHRDGQHYEEGSVIKENCNSCTCSGQ-QWKCSQHVCLVQPGLIEHVNKGDYG 170
Query: 562 WRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNL 741
W A N+S FWGMTL+EG +YRLGT+ PS + +MNE+ L LP F AS KWP
Sbjct: 171 WTAQNYSQFWGMTLEEGFKYRLGTLPPSPLLLSMNEVTASLTKTTDLPEFFIASYKWPGW 230
Query: 742 IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLD 921
H PLDQ NCA SWAFSTA+VA+DR++I S G T LSPQNL+SC + GC SG +D
Sbjct: 231 THGPLDQKNCAASWAFSTASVAADRIAIQSQGRYTANLSPQNLISCCAKKRHGCNSGSVD 290
Query: 922 GAWWFLRRXGVVSDHCYP 975
AWW+LR+ G+VS CYP
Sbjct: 291 RAWWYLRKRGLVSHACYP 308
>ref|NP_776456.1| cathepsin B precursor [Bos taurus].
Length = 335
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLP 705
+++ +N+ N W+AG++ F+ + L ++ G I + + VLP
Sbjct: 29 ELVNFVNKQNTTWKAGHN--FYNVDLSY-VKKLCGAILGGPKLPQRD----AFAADVVLP 81
Query: 706 RAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLS- 876
+F+A E+WPN I + DQG+C WAF SDR+ IHS G + +S +++L+
Sbjct: 82 ESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTC 141
Query: 877 CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
C GC G GAW F + G+VS Y
Sbjct: 142 CGGECGDGCNGGFPSGAWNFWTKKGLVSGGLY 173
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 53.9 bits (128), Expect = 2e-07
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIR--PSSSVANMNEIHTVLGPGEV 699
D +KAIN W A + + +TL E IR G R P A + E+
Sbjct: 173 DFVKAINAIQKSWTAAPYMEYETLTLKEMIRRGGGHSRRIPRPKPAPIT--------AEI 224
Query: 700 LPRAFEASEKWP-------NLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS 858
+ W N + +QG+C ++F++ + R+ I + TP+LS
Sbjct: 225 QKKILHLPTSWDWRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILS 284
Query: 859 PQNLLSCDTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
PQ ++SC + QGC G A + + G+V + C+P+
Sbjct: 285 PQEVVSCSQY-AQGCEGGFPYLIAGKYAQDFGLVEEDCFPY 324
>ref|NP_001192237.1| von Willebrand factor [Bos taurus].
Length = 2809
Score = 49.3 bits (116), Expect = 5e-06
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = +1
Query: 229 RYCQEQDLCCR--GRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQ 402
R C E + C C L YL +T D C+ T + C PD +
Sbjct: 2383 RCCDEYECACNCTNSTVSCPLGYLASTITND--CSCTTTTCLPD---------------K 2425
Query: 403 GCMHRGRIYPVLGTYW-DNCNRCTCQEKGQ-------WECDQEPC 513
C+HRG IYPV G +W + C+ CTC + +C Q+PC
Sbjct: 2426 VCVHRGTIYPV-GQFWEEGCDTCTCTDLEDAVMGLRVAQCSQKPC 2469
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,778,366
Number of extensions: 1522897
Number of successful extensions: 6536
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6497
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014354
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris]. 573 e-164
Alignment gi|XP_538969.2| PREDICTED: similar to tubulointerstitial nephri... 270 2e-72
Alignment gi|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein... 69 5e-12
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 53 5e-07
Alignment gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr... 51 1e-06
>ref|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris].
Length = 550
Score = 573 bits (1477), Expect = e-164
Identities = 258/301 (85%), Positives = 262/301 (87%)
Frame = +1
Query: 76 PSPGGTMWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLRGIRDAGGRYCQEQDLC 255
PSPGGTMWRCPLG HLRGIRDAGGRYCQEQDLC
Sbjct: 78 PSPGGTMWRCPLGLLLLLLLAGESALGARRGRGRRELAPGLHLRGIRDAGGRYCQEQDLC 137
Query: 256 CRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPV 435
CRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGC H RIYPV
Sbjct: 138 CRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCTHGSRIYPV 197
Query: 436 LGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGI 615
LGTYWDNCNRCTCQE+G+WECDQEPCLVD DMI AINQGNYGWRAGNHSAFWGMTLDEGI
Sbjct: 198 LGTYWDNCNRCTCQEQGRWECDQEPCLVDQDMINAINQGNYGWRAGNHSAFWGMTLDEGI 257
Query: 616 RYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFST 795
RYRLGTIRPSSSV NMNEIHTVL PGEVLP AFEA+EKWPNLIH+PLDQGNCAGSWAFST
Sbjct: 258 RYRLGTIRPSSSVTNMNEIHTVLRPGEVLPTAFEAAEKWPNLIHEPLDQGNCAGSWAFST 317
Query: 796 AAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCYP 975
AAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGC GRLDGAWWFLRR GVVSDHCYP
Sbjct: 318 AAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCRGGRLDGAWWFLRRRGVVSDHCYP 377
Query: 976 F 978
F
Sbjct: 378 F 378
>ref|XP_538969.2| PREDICTED: similar to tubulointerstitial nephritis antigen [Canis
familiaris].
Length = 476
Score = 270 bits (689), Expect = 2e-72
Identities = 131/257 (50%), Positives = 163/257 (63%), Gaps = 7/257 (2%)
Frame = +1
Query: 226 GRYCQEQDLCCRGRADDCALPYL--GATCYCDLFCNRTVSDCCPDFWDFCLGV---PPPF 390
G+YC+ CC R DDC + A CYCD FC R SDCCPD+ FC PP
Sbjct: 54 GQYCRSFG-CCEDRDDDCVTHFYEANALCYCDNFCERENSDCCPDYKSFCHEEKEWPPHI 112
Query: 391 PPI--QGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGW 564
P +GC G++Y +NCN CTC + QW+C Q CLV P++I+ +N+G+YGW
Sbjct: 113 KPWDPEGCFRDGQLYEEGSVIKENCNSCTCSGQ-QWKCSQLVCLVQPELIEHVNKGDYGW 171
Query: 565 RAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLI 744
A N+S FWGMTL+EG +YRLGT+ PS + +MNE+ L LP F AS KWP
Sbjct: 172 TAQNYSQFWGMTLEEGFKYRLGTLPPSPMLLSMNEMTASLPATTDLPEFFIASYKWPGWT 231
Query: 745 HDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDG 924
H PLDQ NCA SWAFSTA+VA+DR++I S G T LSPQNL+SC N+ GC SG +D
Sbjct: 232 HGPLDQKNCAASWAFSTASVAADRIAIQSNGRYTANLSPQNLISCCAKNRHGCNSGSIDR 291
Query: 925 AWWFLRRXGVVSDHCYP 975
AWWFLR+ G+VS CYP
Sbjct: 292 AWWFLRKRGLVSHACYP 308
>ref|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein [Canis familiaris].
Length = 420
Score = 69.3 bits (168), Expect = 5e-12
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRL-GTIRPSSSVANMNEIHTVLGPGEVL 702
+++ +N+ N W+AG++ +D RL GT + + L +L
Sbjct: 110 ELVDYVNKRNTTWKAGHNFH----NVDPSYLRRLCGTFLGGPKLPQRVQFAKNL----IL 161
Query: 703 PRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLS 876
P +F+A E+WPN I + DQG+C WAF SDR+ I + GH+ +S +++L+
Sbjct: 162 PESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRTNGHVNVEVSAEDMLT 221
Query: 877 -CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
C GC G AW F + G+VS Y
Sbjct: 222 CCGDQCGDGCNGGFPAEAWNFWTKQGLVSGGLY 254
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 52.8 bits (125), Expect = 5e-07
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMN-EIHTVLGPGEVL 702
+ +KAIN W A + + +TL + + G P + EIH + L
Sbjct: 172 EFVKAINTIQKSWTATRYIEYETLTLRDMMTRVGGRKIPRPKPTPLTAEIHEEISR---L 228
Query: 703 PRAFE-ASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC 879
P +++ + + N + +Q +C +AF++ A+ R+ I + TP+LSPQ ++SC
Sbjct: 229 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQEIVSC 288
Query: 880 DTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
+ QGC G A + + G+V + C+P+
Sbjct: 289 SQY-AQGCEGGFPYLIAGKYAQDFGLVEEACFPY 321
>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I)
(DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl
transferase), partial [Canis familiaris].
Length = 481
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMN-EIHTVLGPGEVL 702
+ +KAIN W A + + +TL + +R G P + EIH + L
Sbjct: 194 EFVKAINTIQKSWTATRYIEYETLTLRDMMRRAGGRKIPRPKPTPLTAEIHEEISR---L 250
Query: 703 PRAFE-ASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC 879
P +++ + + N + +Q +C +AF++ + R+ I + TP+LSPQ ++SC
Sbjct: 251 PTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTVMLEARIRILTNNTQTPILSPQEIVSC 310
Query: 880 DTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
+ QGC G A + + G+V + C+ +
Sbjct: 311 SQY-AQGCEGGFPYLIAGKYAQDFGLVDEACFSY 343
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,422,097
Number of extensions: 1541692
Number of successful extensions: 6944
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6898
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127800.2| PREDICTED: tubulointerstitial nephritis anti... 413 e-116
Alignment gi|XP_001927698.3| PREDICTED: tubulointerstitial nephritis anti... 266 2e-71
Alignment gi|XP_003127815.2| PREDICTED: ornithine decarboxylase-like [Sus... 175 3e-44
Alignment gi|NP_001090927.1| cathepsin B precursor [Sus scrofa]. 74 1e-13
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 54 1e-07
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 49 3e-06
>ref|XP_003127800.2| PREDICTED: tubulointerstitial nephritis antigen [Sus scrofa].
Length = 362
Score = 413 bits (1061), Expect = e-116
Identities = 187/190 (98%), Positives = 187/190 (98%)
Frame = +1
Query: 409 MHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAF 588
MHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAF
Sbjct: 1 MHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAF 60
Query: 589 WGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGN 768
WGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGN
Sbjct: 61 WGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGN 120
Query: 769 CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRX 948
CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGC GRLDGAWWFLRR
Sbjct: 121 CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCQGGRLDGAWWFLRRR 180
Query: 949 GVVSDHCYPF 978
GVVSDHCYPF
Sbjct: 181 GVVSDHCYPF 190
>ref|XP_001927698.3| PREDICTED: tubulointerstitial nephritis antigen [Sus scrofa].
Length = 476
Score = 266 bits (679), Expect = 2e-71
Identities = 128/259 (49%), Positives = 160/259 (61%), Gaps = 9/259 (3%)
Frame = +1
Query: 226 GRYCQEQDLCCRGRADDCALPYL--GATCYCDLFCNRTVSDCCPDFWDFCLG-------V 378
G+YC+ CC R D C P+ A CYCD FC R SDCCPD+ FC
Sbjct: 54 GQYCRSFG-CCEDRDDSCVTPFYEANAVCYCDKFCERENSDCCPDYQSFCREEKEWRPHT 112
Query: 379 PPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNY 558
P +P +GC G+ Y +NCN CTC + QW C Q CLV P +I+ +N+G++
Sbjct: 113 KPWYP--EGCHRDGQHYEEGSVIKENCNSCTCSGQ-QWNCSQHVCLVQPGLIEHVNEGDF 169
Query: 559 GWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPN 738
GW A N+S FWGMTL+EG +YRLGT+ PS + +MNE+ L LP F AS KWP
Sbjct: 170 GWTAQNYSQFWGMTLEEGFKYRLGTLPPSPLLLSMNEVTASLPETTDLPEFFVASYKWPG 229
Query: 739 LIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRL 918
H PLDQ NCA SWAFSTA+VA+DR++I S G T LSPQNL+SC N+ GC SG +
Sbjct: 230 WTHGPLDQKNCAASWAFSTASVAADRIAIQSEGRYTANLSPQNLISCCAKNRHGCNSGSI 289
Query: 919 DGAWWFLRRXGVVSDHCYP 975
D AWW+LR+ G+VS CYP
Sbjct: 290 DRAWWYLRKRGLVSHACYP 308
>ref|XP_003127815.2| PREDICTED: ornithine decarboxylase-like [Sus scrofa].
Length = 577
Score = 175 bits (444), Expect = 3e-44
Identities = 77/106 (72%), Positives = 77/106 (72%)
Frame = +1
Query: 85 GGTMWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLRGIRDAGGRYCQEQDLCCRG 264
GGTMWRCPLG HLRGIRDAGGRYCQEQDLCC G
Sbjct: 469 GGTMWRCPLGLLLLLLLAGELALGARRGRGRRELAPALHLRGIRDAGGRYCQEQDLCCHG 528
Query: 265 RADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQ 402
RADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQ
Sbjct: 529 RADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQ 574
Score = 71.6 bits (174), Expect = 6e-13
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +1
Query: 469 TCQEKGQWECDQEPCLVDPDMIKAINQGNYGWR 567
TCQEKGQWECDQEPCLVDPDMIKAINQG WR
Sbjct: 442 TCQEKGQWECDQEPCLVDPDMIKAINQGGTMWR 474
>ref|NP_001090927.1| cathepsin B precursor [Sus scrofa].
Length = 335
Score = 73.9 bits (180), Expect = 1e-13
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLP 705
+++ IN+ N W AG++ F+ + L ++ GT + +LP
Sbjct: 29 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQ----RAAFAADMILP 81
Query: 706 RAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLS- 876
++F+A E+WPN I + DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 82 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTC 141
Query: 877 CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
C GC G GAW F + G+VS Y
Sbjct: 142 CGDECGDGCNGGFPSGAWNFWTKKGLVSGGLY 173
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 53.9 bits (128), Expect = 1e-07
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDE------GIRYRLGTIRPSSSVANMNE--IHTV 681
D +KAIN W A + + +TL E G RL +P+ A + E +H
Sbjct: 173 DFVKAINGIQKSWTATAYMEYETLTLKEMTQRGGGYNQRLPRPKPAPITAEIQEKSLH-- 230
Query: 682 LGPGEVLPRAFE-ASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLS 858
LP +++ + + N + +Q +C ++F++ + R+ I + TP+LS
Sbjct: 231 ------LPASWDWRNVRGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILS 284
Query: 859 PQNLLSCDTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
PQ ++SC + QGC G A + + G+V + C+P+
Sbjct: 285 PQEVVSCSQY-AQGCAGGFPYLIAGKYAQDFGLVEEACFPY 324
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 49.3 bits (116), Expect = 3e-06
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
Frame = +1
Query: 532 IKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRA 711
I A N GN+ ++ G + F M+ DE IR++ P + A GP P +
Sbjct: 65 INAHNAGNHTFKLGLNQ-FSDMSFDE-IRHKYLWSEPQNCSATKGNYLRGTGP---YPPS 119
Query: 712 FEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTH 888
+ +K N + +QG+C W FST V+I + G M L+ Q L+ C
Sbjct: 120 MDWRKKG-NFVSPVKNQGSCGSCWTFSTTGALESAVAI-ATGKMLS-LAEQQLVDCAQNF 176
Query: 889 NQQGCPSGRLDGAWWFLR-RXGVVSDHCYPF 978
N GC G A+ ++R G++ + YP+
Sbjct: 177 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,810,950
Number of extensions: 1011206
Number of successful extensions: 4217
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4181
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161805.1| tubulointerstitial nephritis antigen-like pr... 543 e-155
Alignment gi|NP_075965.2| tubulointerstitial nephritis antigen-like precu... 543 e-155
Alignment gi|NP_036163.3| tubulointerstitial nephritis antigen [Mus muscu... 265 3e-71
Alignment gi|NP_031824.1| cathepsin B preproprotein [Mus musculus]. 73 4e-13
Alignment gi|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus muscu... 51 2e-06
>ref|NP_001161805.1| tubulointerstitial nephritis antigen-like precursor [Mus musculus].
Length = 466
Score = 543 bits (1399), Expect = e-155
Identities = 237/260 (91%), Positives = 249/260 (95%)
Frame = +1
Query: 199 HLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGV 378
HLRGIRDAGGRYCQEQD+CCRGRAD+CALPYLGATCYCDLFCNRTVSDCCPDFWDFCLG+
Sbjct: 35 HLRGIRDAGGRYCQEQDMCCRGRADECALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGI 94
Query: 379 PPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNY 558
PPPFPP+QGCMH GRIYPV GTYWDNCNRCTC E G WECDQEPCLVDPDMIKAIN+GNY
Sbjct: 95 PPPFPPVQGCMHGGRIYPVFGTYWDNCNRCTCHEGGHWECDQEPCLVDPDMIKAINRGNY 154
Query: 559 GWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPN 738
GW+AGNHSAFWGMTLDEGIRYRLGTIRPSS+V NMNEI+TVLG GEVLP AFEASEKWPN
Sbjct: 155 GWQAGNHSAFWGMTLDEGIRYRLGTIRPSSTVMNMNEIYTVLGQGEVLPTAFEASEKWPN 214
Query: 739 LIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRL 918
LIH+PLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTP+LSPQNLLSCDTH+QQGC GRL
Sbjct: 215 LIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQQGCRGGRL 274
Query: 919 DGAWWFLRRXGVVSDHCYPF 978
DGAWWFLRR GVVSD+CYPF
Sbjct: 275 DGAWWFLRRRGVVSDNCYPF 294
>ref|NP_075965.2| tubulointerstitial nephritis antigen-like precursor [Mus musculus].
Length = 466
Score = 543 bits (1399), Expect = e-155
Identities = 237/260 (91%), Positives = 249/260 (95%)
Frame = +1
Query: 199 HLRGIRDAGGRYCQEQDLCCRGRADDCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGV 378
HLRGIRDAGGRYCQEQD+CCRGRAD+CALPYLGATCYCDLFCNRTVSDCCPDFWDFCLG+
Sbjct: 35 HLRGIRDAGGRYCQEQDMCCRGRADECALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGI 94
Query: 379 PPPFPPIQGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNY 558
PPPFPP+QGCMH GRIYPV GTYWDNCNRCTC E G WECDQEPCLVDPDMIKAIN+GNY
Sbjct: 95 PPPFPPVQGCMHGGRIYPVFGTYWDNCNRCTCHEGGHWECDQEPCLVDPDMIKAINRGNY 154
Query: 559 GWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPN 738
GW+AGNHSAFWGMTLDEGIRYRLGTIRPSS+V NMNEI+TVLG GEVLP AFEASEKWPN
Sbjct: 155 GWQAGNHSAFWGMTLDEGIRYRLGTIRPSSTVMNMNEIYTVLGQGEVLPTAFEASEKWPN 214
Query: 739 LIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRL 918
LIH+PLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTP+LSPQNLLSCDTH+QQGC GRL
Sbjct: 215 LIHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQQGCRGGRL 274
Query: 919 DGAWWFLRRXGVVSDHCYPF 978
DGAWWFLRR GVVSD+CYPF
Sbjct: 275 DGAWWFLRRRGVVSDNCYPF 294
>ref|NP_036163.3| tubulointerstitial nephritis antigen [Mus musculus].
Length = 475
Score = 265 bits (678), Expect = 3e-71
Identities = 129/257 (50%), Positives = 158/257 (61%), Gaps = 7/257 (2%)
Frame = +1
Query: 226 GRYCQEQDLCCRGRADDCALPYL--GATCYCDLFCNRTVSDCCPDFWDFCLGVP--PPFP 393
G YC+ CC R D C + A CYCD FC R SDCCPD+ FC PPF
Sbjct: 53 GEYCRRFG-CCEARDDTCVTQFYEANALCYCDSFCERDTSDCCPDYKSFCHEEKEEPPFQ 111
Query: 394 PI---QGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGW 564
+GC + Y +NCN CTC + QW+C Q CLV P++I IN+G+YGW
Sbjct: 112 QPSDPEGCFRDSQHYEEGSVVKENCNSCTCSGQ-QWKCSQHVCLVHPELIDHINKGDYGW 170
Query: 565 RAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLI 744
A N+S FWGMTL+EG ++RLGT+ PS + +MNE+ P LP F AS KWP
Sbjct: 171 TAQNYSQFWGMTLEEGFKFRLGTLPPSPMLLSMNEMTASFPPRADLPEIFIASYKWPGWT 230
Query: 745 HDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDG 924
H PLDQ NCA SWAFSTA+VA+DR++I S G T LSPQNL+SC N+ GC SG +D
Sbjct: 231 HGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDR 290
Query: 925 AWWFLRRXGVVSDHCYP 975
AWWFLR+ G+VS CYP
Sbjct: 291 AWWFLRKRGLVSHACYP 307
>ref|NP_031824.1| cathepsin B preproprotein [Mus musculus].
Length = 339
Score = 72.8 bits (177), Expect = 4e-13
Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLP 705
D+I IN+ N W+AG + F+ + + ++ GT+ + G LP
Sbjct: 29 DLINYINKQNTTWQAGRN--FYNVDISY-LKKLCGTVLGGPKLPG----RVAFGEDIDLP 81
Query: 706 RAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLS- 876
F+A E+W N I DQG+C WAF SDR IH+ G + +S ++LL+
Sbjct: 82 ETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTC 141
Query: 877 CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
C GC G GAW F + G+VS Y
Sbjct: 142 CGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVY 173
>ref|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus musculus].
Length = 462
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIR-PSSSVANMNEIHTVLGPGEVL 702
+ +KAIN W A + + M+L + IR + R P A M + E+
Sbjct: 173 NFVKAINTVQKSWTATAYKEYEKMSLRDLIRRSGHSQRIPRPKPAPMTD--------EIQ 224
Query: 703 PRAFEASEKWP-------NLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSP 861
+ E W N + +Q +C ++F++ + R+ I + TP+LSP
Sbjct: 225 QQILNLPESWDWRNVQGVNYVSPVRNQESCGSCYSFASMGMLEARIRILTNNSQTPILSP 284
Query: 862 QNLLSCDTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
Q ++SC + QGC G A + + GVV + C+P+
Sbjct: 285 QEVVSCSPY-AQGCDGGFPYLIAGKYAQDFGVVEESCFPY 323
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,939,399
Number of extensions: 1235158
Number of successful extensions: 4894
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4834
Number of HSP's successfully gapped: 5
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071447.1| tubulointerstitial nephritis antigen-like isofo... 557 e-159
Alignment gi|NP_001191343.1| tubulointerstitial nephritis antigen-like is... 477 e-135
Alignment gi|NP_001191344.1| tubulointerstitial nephritis antigen-like is... 387 e-108
Alignment gi|NP_055279.3| tubulointerstitial nephritis antigen [Homo sapi... 260 1e-69
Alignment gi|NP_680093.1| cathepsin B preproprotein [Homo sapiens]. 70 2e-12
Alignment gi|NP_680092.1| cathepsin B preproprotein [Homo sapiens]. 70 2e-12
Alignment gi|NP_680091.1| cathepsin B preproprotein [Homo sapiens]. 70 2e-12
Alignment gi|NP_680090.1| cathepsin B preproprotein [Homo sapiens]. 70 2e-12
Alignment gi|NP_001899.1| cathepsin B preproprotein [Homo sapiens]. 70 2e-12
Alignment gi|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein ... 51 1e-06
>ref|NP_071447.1| tubulointerstitial nephritis antigen-like isoform 1 precursor [Homo
sapiens].
Length = 467
Score = 557 bits (1436), Expect = e-159
Identities = 251/295 (85%), Positives = 256/295 (86%)
Frame = +1
Query: 94 MWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLRGIRDAGGRYCQEQDLCCRGRAD 273
MWRCPLG HLRGIRDAGGRYCQEQDLCCRGRAD
Sbjct: 1 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD 60
Query: 274 DCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWD 453
DCALPYLGA CYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMH GRIYPVLGTYWD
Sbjct: 61 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD 120
Query: 454 NCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGT 633
NCNRCTCQE QW+CDQEPCLVDPDMIKAINQGNYGW+AGNHSAFWGMTLDEGIRYRLGT
Sbjct: 121 NCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGT 180
Query: 634 IRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASD 813
IRPSSSV NM+EI+TVL PGEVLP AFEASEKWPNLIH+PLDQGNCAGSWAFSTAAVASD
Sbjct: 181 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD 240
Query: 814 RVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCYPF 978
RVSIHSLGHMTPVLSPQNLLSCDTH QQGC GRLDGAWWFLRR GVVSDHCYPF
Sbjct: 241 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPF 295
>ref|NP_001191343.1| tubulointerstitial nephritis antigen-like isoform 2 precursor [Homo
sapiens].
Length = 436
Score = 477 bits (1228), Expect = e-135
Identities = 223/295 (75%), Positives = 227/295 (76%)
Frame = +1
Query: 94 MWRCPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLRGIRDAGGRYCQEQDLCCRGRAD 273
MWRCPLG HLRGIRDAGGRYCQEQDLCCRGRAD
Sbjct: 1 MWRCPLGLLLLLPLAGHLALGAQQGRGRRELAPGLHLRGIRDAGGRYCQEQDLCCRGRAD 60
Query: 274 DCALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHRGRIYPVLGTYWD 453
DCALPYLGA CYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMH GRIYPVLGTYWD
Sbjct: 61 DCALPYLGAICYCDLFCNRTVSDCCPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWD 120
Query: 454 NCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGT 633
NCNRC W+AGNHSAFWGMTLDEGIRYRLGT
Sbjct: 121 NCNRC-------------------------------WQAGNHSAFWGMTLDEGIRYRLGT 149
Query: 634 IRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGNCAGSWAFSTAAVASD 813
IRPSSSV NM+EI+TVL PGEVLP AFEASEKWPNLIH+PLDQGNCAGSWAFSTAAVASD
Sbjct: 150 IRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGNCAGSWAFSTAAVASD 209
Query: 814 RVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCYPF 978
RVSIHSLGHMTPVLSPQNLLSCDTH QQGC GRLDGAWWFLRR GVVSDHCYPF
Sbjct: 210 RVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGVVSDHCYPF 264
>ref|NP_001191344.1| tubulointerstitial nephritis antigen-like isoform 3 [Homo sapiens].
Length = 362
Score = 387 bits (995), Expect = e-108
Identities = 175/190 (92%), Positives = 180/190 (94%)
Frame = +1
Query: 409 MHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGWRAGNHSAF 588
MH GRIYPVLGTYWDNCNRCTCQE QW+CDQEPCLVDPDMIKAINQGNYGW+AGNHSAF
Sbjct: 1 MHGGRIYPVLGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAF 60
Query: 589 WGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLIHDPLDQGN 768
WGMTLDEGIRYRLGTIRPSSSV NM+EI+TVL PGEVLP AFEASEKWPNLIH+PLDQGN
Sbjct: 61 WGMTLDEGIRYRLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPNLIHEPLDQGN 120
Query: 769 CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDGAWWFLRRX 948
CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTH QQGC GRLDGAWWFLRR
Sbjct: 121 CAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRR 180
Query: 949 GVVSDHCYPF 978
GVVSDHCYPF
Sbjct: 181 GVVSDHCYPF 190
>ref|NP_055279.3| tubulointerstitial nephritis antigen [Homo sapiens].
Length = 476
Score = 260 bits (665), Expect = 1e-69
Identities = 126/257 (49%), Positives = 161/257 (62%), Gaps = 7/257 (2%)
Frame = +1
Query: 226 GRYCQEQDLCCRGRADDCALPYLGAT--CYCDLFCNRTVSDCCPDFWDFCLGV---PPPF 390
G+YC+ CC R D C + A CYCD FC+R SDCCPD+ FC PP
Sbjct: 54 GQYCRNFG-CCEDRDDGCVTEFYAANALCYCDKFCDRENSDCCPDYKSFCREEKEWPPHT 112
Query: 391 PPI--QGCMHRGRIYPVLGTYWDNCNRCTCQEKGQWECDQEPCLVDPDMIKAINQGNYGW 564
P +GC G+ Y +NCN CTC + QW+C Q CLV ++I+ +N+G+YGW
Sbjct: 113 QPWYPEGCFKDGQHYEEGSVIKENCNSCTCSGQ-QWKCSQHVCLVRSELIEQVNKGDYGW 171
Query: 565 RAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLPRAFEASEKWPNLI 744
A N+S FWGMTL++G ++RLGT+ PS + +MNE+ L LP F AS KWP
Sbjct: 172 TAQNYSQFWGMTLEDGFKFRLGTLPPSPMLLSMNEMTASLPATTDLPEFFVASYKWPGWT 231
Query: 745 HDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHNQQGCPSGRLDG 924
H PLDQ NCA SWAFSTA+VA+DR++I S G T LSPQNL+SC N+ GC SG +D
Sbjct: 232 HGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDR 291
Query: 925 AWWFLRRXGVVSDHCYP 975
AWW+LR+ G+VS CYP
Sbjct: 292 AWWYLRKRGLVSHACYP 308
>ref|NP_680093.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 70.5 bits (171), Expect = 2e-12
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYR---LGTIRPSSSVANMNEIHTVLGPGE 696
+++ +N+ N W+AG++ F+ + + R LG +P V ++
Sbjct: 29 ELVNYVNKRNTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK------- 79
Query: 697 VLPRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 870
LP +F+A E+WP I + DQG+C WAF SDR+ IH+ H++ +S ++L
Sbjct: 80 -LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 138
Query: 871 LS-CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
L+ C + GC G AW F R G+VS Y
Sbjct: 139 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY 173
>ref|NP_680092.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 70.5 bits (171), Expect = 2e-12
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYR---LGTIRPSSSVANMNEIHTVLGPGE 696
+++ +N+ N W+AG++ F+ + + R LG +P V ++
Sbjct: 29 ELVNYVNKRNTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK------- 79
Query: 697 VLPRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 870
LP +F+A E+WP I + DQG+C WAF SDR+ IH+ H++ +S ++L
Sbjct: 80 -LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 138
Query: 871 LS-CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
L+ C + GC G AW F R G+VS Y
Sbjct: 139 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY 173
>ref|NP_680091.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 70.5 bits (171), Expect = 2e-12
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYR---LGTIRPSSSVANMNEIHTVLGPGE 696
+++ +N+ N W+AG++ F+ + + R LG +P V ++
Sbjct: 29 ELVNYVNKRNTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK------- 79
Query: 697 VLPRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 870
LP +F+A E+WP I + DQG+C WAF SDR+ IH+ H++ +S ++L
Sbjct: 80 -LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 138
Query: 871 LS-CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
L+ C + GC G AW F R G+VS Y
Sbjct: 139 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY 173
>ref|NP_680090.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 70.5 bits (171), Expect = 2e-12
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYR---LGTIRPSSSVANMNEIHTVLGPGE 696
+++ +N+ N W+AG++ F+ + + R LG +P V ++
Sbjct: 29 ELVNYVNKRNTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK------- 79
Query: 697 VLPRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 870
LP +F+A E+WP I + DQG+C WAF SDR+ IH+ H++ +S ++L
Sbjct: 80 -LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 138
Query: 871 LS-CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
L+ C + GC G AW F R G+VS Y
Sbjct: 139 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY 173
>ref|NP_001899.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 70.5 bits (171), Expect = 2e-12
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 526 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYR---LGTIRPSSSVANMNEIHTVLGPGE 696
+++ +N+ N W+AG++ F+ + + R LG +P V ++
Sbjct: 29 ELVNYVNKRNTTWQAGHN--FYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK------- 79
Query: 697 VLPRAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 870
LP +F+A E+WP I + DQG+C WAF SDR+ IH+ H++ +S ++L
Sbjct: 80 -LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 138
Query: 871 LS-CDTHNQQGCPSGRLDGAWWFLRRXGVVSDHCY 972
L+ C + GC G AW F R G+VS Y
Sbjct: 139 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLY 173
>ref|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein [Homo sapiens].
Length = 463
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Frame = +1
Query: 520 DPDMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIR--PSSSVANMNEIHTVLGPG 693
D + +KAIN W A + + +TL + IR G R P A +
Sbjct: 171 DHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLT--------A 222
Query: 694 EVLPRAFEASEKWP-------NLIHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPV 852
E+ + W N + +Q +C ++F++ + R+ I + TP+
Sbjct: 223 EIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPI 282
Query: 853 LSPQNLLSCDTHNQQGCPSG-RLDGAWWFLRRXGVVSDHCYPF 978
LSPQ ++SC + QGC G A + + G+V + C+P+
Sbjct: 283 LSPQEVVSCSQY-AQGCEGGFPYLIAGKYAQDFGLVEEACFPY 324
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,455,072
Number of extensions: 1502900
Number of successful extensions: 6602
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6533
Number of HSP's successfully gapped: 10
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014354
(980 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 523 e-146
>Sscrofa_Chr06
|| Length = 157765593
Score = 523 bits (264), Expect = e-146
Identities = 267/268 (99%)
Strand = Plus / Plus
Query: 137 ctggcgagttggccctgggtgcccggcggggtcgtgggcgccgggagcttgcaccggctc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81807443 ctggcgagttggccctgggtgcccggcggggtcgtgggcgccgggagcttgcaccggctc 81807502
Query: 197 tgcacctgcggggcatccgggatgcgggtggccggtactgccaggagcaggacctgtgct 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81807503 tgcacctgcggggcatccgggatgcgggtggccggtactgccaggagcaggacctgtgct 81807562
Query: 257 gccgtggccgtgccgatgactgcgccctgccctacctgggtgctacctgttactgtgacc 316
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81807563 gccatggccgtgccgatgactgcgccctgccctacctgggtgctacctgttactgtgacc 81807622
Query: 317 tcttctgcaaccgcaccgtctccgactgctgccctgacttctgggacttctgcctcggcg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81807623 tcttctgcaaccgcaccgtctccgactgctgccctgacttctgggacttctgcctcggcg 81807682
Query: 377 tgccacccccttttccccccatccaagg 404
||||||||||||||||||||||||||||
Sbjct: 81807683 tgccacccccttttccccccatccaagg 81807710
Score = 285 bits (144), Expect = 2e-74
Identities = 152/155 (98%)
Strand = Plus / Plus
Query: 797 cagctgtggcgtcagatcgagtctcaatccattctctggggcacatgacacctgtcctat 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81818455 cagctgtggcgtcagatcgagtctcaatccattctctggggcacatgacacctgtcctat 81818514
Query: 857 cgccccagaacctgctgtcttgtgacacgcacaaccagcagggttgcccaagtgggcgtt 916
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 81818515 cgccccagaacctgctgtcttgtgacacgcacaaccagcagggttgccaaggtgggcgtt 81818574
Query: 917 tggatggtgcctggtggttcctgcgacgacnaggg 951
|||||||||||||||||||||||||||||| ||||
Sbjct: 81818575 tggatggtgcctggtggttcctgcgacgacgaggg 81818609
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 676 acagtactgggcccaggggaggtgctgcccagagccttcgaggcctctgagaagtggccc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81818249 acagtactgggcccaggggaggtgctgcccagagccttcgaggcctctgagaagtggccc 81818308
Query: 736 aacctgatccacgaccctctggatcaaggcaactgtgcaggctcctgggccttctccaca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81818309 aacctgatccacgaccctctggatcaaggcaactgtgcaggctcctgggccttctccaca 81818368
Query: 796 gcag 799
||||
Sbjct: 81818369 gcag 81818372
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 560 ggtggcgggctgggaaccacagtgccttctggggcatgaccctggatgagggcattcgat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81817047 ggtggcgggctgggaaccacagtgccttctggggcatgaccctggatgagggcattcgat 81817106
Query: 620 accgcctgggcaccatccgcccatcttcctccgtcgccaatatgaatgagattcat 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81817107 accgcctgggcaccatccgcccatcttcctccgtcgccaatatgaatgagattcat 81817162
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 467 gcacctgccaggagaaagggcagtgggagtgtgaccaggagccatgcctggtggacccag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81816762 gcacctgccaggagaaagggcagtgggagtgtgaccaggagccatgcctggtggacccag 81816821
Query: 527 acatgatcaaggccatcaaccaaggcaactatgggt 562
||||||||||||||||||||||||||||||||||||
Sbjct: 81816822 acatgatcaaggccatcaaccaaggcaactatgggt 81816857
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 acttgactttgagtgtccggcggtcgctggagccgggaggcggaggcaagtgaggcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81806778 acttgactttgagtgtccggcggtcgctggagccgggaggcggaggcaagtgaggcagcc 81806837
Query: 61 gggctcagcccacacccctcaccagg 86
||||||||||||||||||||||||||
Sbjct: 81806838 gggctcagcccacacccctcaccagg 81806863
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 402 aggatgtatgcacaggggtcgcatctatccagtcttgggaacctactgggacaactgtaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81808657 aggatgtatgcacaggggtcgcatctatccagtcttgggaacctactgggacaactgtaa 81808716
Query: 462 ccggtg 467
||||||
Sbjct: 81808717 ccggtg 81808722
Score = 89.7 bits (45), Expect = 3e-15
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 17 ccggcggtcgctggagccgggaggcggaggcaagtgaggcagccgggctcagcccacacc 76
||||||| ||| || |||||||||||||||| | ||||||||||||| |||||||||||
Sbjct: 81806538 ccggcggncgcnggngccgggaggcggaggcnngcgaggcagccgggcncagcccacacc 81806597
Query: 77 cctcaccagg 86
|| |||||||
Sbjct: 81806598 ccncaccagg 81806607
Score = 61.9 bits (31), Expect = 6e-07
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 950 gggtggtgtctgaccactgctacccattctc 980
|||||||||||||||||||||||||||||||
Sbjct: 81818709 gggtggtgtctgaccactgctacccattctc 81818739
Score = 58.0 bits (29), Expect = 9e-06
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 82 ccaggaggcaccatgtggcgatgtccact 110
|||||||||||||||||||||||||||||
Sbjct: 81807388 ccaggaggcaccatgtggcgatgtccact 81807416
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,125,066
Number of extensions: 132
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 10
Length of query: 980
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 959
Effective length of database: 2,808,413,156
Effective search space: 2693268216604
Effective search space used: 2693268216604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)