Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039661.1| HMG box-containing protein 1 [Bos taurus]. 651 0.0
>ref|NP_001039661.1| HMG box-containing protein 1 [Bos taurus].
Length = 512
Score = 651 bits (1680), Expect = 0.0
Identities = 307/329 (93%), Positives = 317/329 (96%)
Frame = +2
Query: 41 MVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 220
MVWEVK+NQMP+AVQKLLLVMDKR G++DSL+LLQC E LPSSPGYNSCDEHMELDDLP
Sbjct: 1 MVWEVKSNQMPDAVQKLLLVMDKRAPGVSDSLQLLQCKETLPSSPGYNSCDEHMELDDLP 60
Query: 221 ELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELANIATS 400
ELQAVQSD T SAIYQLSSDVSHQEYPRPSWNQNTS+ISENTYRENEVDWLTELANIATS
Sbjct: 61 ELQAVQSDPTPSAIYQLSSDVSHQEYPRPSWNQNTSEISENTYRENEVDWLTELANIATS 120
Query: 401 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWKEETPVRHERA 580
PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPV+SSK EP FPHH WKE+TPVRHERA
Sbjct: 121 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVASSKGEPAFPHH-WKEQTPVRHERA 179
Query: 581 NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVEDFARTE 760
NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQ+VEDFARTE
Sbjct: 180 NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQNVEDFARTE 239
Query: 761 GCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP 940
GCDNEEDLQMGTHK YGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP
Sbjct: 240 GCDNEEDLQMGTHKDYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP 299
Query: 941 FYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
FYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 300 FYVKNKGWSSFYPSLTVVQHGIPCCEIHI 328
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,266,757
Number of extensions: 1127072
Number of successful extensions: 3329
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3328
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014357
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857700.1| PREDICTED: similar to HMG-box transcription fac... 684 0.0
Alignment gi|XP_848983.1| PREDICTED: similar to HMG-box transcription fac... 684 0.0
Alignment gi|XP_857504.1| PREDICTED: similar to HMG-box transcription fac... 684 0.0
Alignment gi|XP_857742.1| PREDICTED: similar to HMG-box transcription fac... 665 0.0
Alignment gi|XP_857461.1| PREDICTED: similar to HMG-box transcription fac... 179 5e-45
>ref|XP_857700.1| PREDICTED: similar to HMG-box transcription factor 1 isoform 7 [Canis
familiaris].
Length = 470
Score = 684 bits (1764), Expect = 0.0
Identities = 326/339 (96%), Positives = 328/339 (96%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLS HHNMVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSGHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSD TQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTY ENEVDW
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYGENEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK 550
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEP FP HWK
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPAFP-QHWK 179
Query: 551 EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 730
EET V HERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW
Sbjct: 180 EETAVGHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 239
Query: 731 QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 910
QDVEDFARTEGCDNEEDLQ+GTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL
Sbjct: 240 QDVEDFARTEGCDNEEDLQVGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 299
Query: 911 LTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 300 LTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHI 338
>ref|XP_848983.1| PREDICTED: similar to HMG-box transcription factor 1 isoform 2 [Canis
familiaris].
Length = 522
Score = 684 bits (1764), Expect = 0.0
Identities = 326/339 (96%), Positives = 328/339 (96%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLS HHNMVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSGHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSD TQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTY ENEVDW
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYGENEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK 550
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEP FP HWK
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPAFP-QHWK 179
Query: 551 EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 730
EET V HERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW
Sbjct: 180 EETAVGHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 239
Query: 731 QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 910
QDVEDFARTEGCDNEEDLQ+GTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL
Sbjct: 240 QDVEDFARTEGCDNEEDLQVGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 299
Query: 911 LTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 300 LTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHI 338
>ref|XP_857504.1| PREDICTED: similar to HMG-box transcription factor 1 isoform 4 [Canis
familiaris].
Length = 522
Score = 684 bits (1764), Expect = 0.0
Identities = 326/339 (96%), Positives = 328/339 (96%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLS HHNMVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSGHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSD TQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTY ENEVDW
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYGENEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK 550
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEP FP HWK
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPAFP-QHWK 179
Query: 551 EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 730
EET V HERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW
Sbjct: 180 EETAVGHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 239
Query: 731 QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 910
QDVEDFARTEGCDNEEDLQ+GTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL
Sbjct: 240 QDVEDFARTEGCDNEEDLQVGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 299
Query: 911 LTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 300 LTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHI 338
>ref|XP_857742.1| PREDICTED: similar to HMG-box transcription factor 1 isoform 8 [Canis
familiaris].
Length = 512
Score = 665 bits (1716), Expect = 0.0
Identities = 317/329 (96%), Positives = 319/329 (96%)
Frame = +2
Query: 41 MVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 220
MVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
Sbjct: 1 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 60
Query: 221 ELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELANIATS 400
ELQAVQSD TQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTY ENEVDWLTELANIATS
Sbjct: 61 ELQAVQSDPTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYGENEVDWLTELANIATS 120
Query: 401 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWKEETPVRHERA 580
PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEP FP H WKEET V HERA
Sbjct: 121 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPAFPQH-WKEETAVGHERA 179
Query: 581 NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVEDFARTE 760
NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVEDFARTE
Sbjct: 180 NSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVEDFARTE 239
Query: 761 GCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP 940
GCDNEEDLQ+GTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP
Sbjct: 240 GCDNEEDLQVGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDHP 299
Query: 941 FYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
FYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 300 FYVKNKGWSSFYPSLTVVQHGIPCCEIHI 328
>ref|XP_857461.1| PREDICTED: similar to HMG-box transcription factor 1 isoform 3
[Canis familiaris].
Length = 119
Score = 179 bits (453), Expect = 5e-45
Identities = 87/91 (95%), Positives = 88/91 (96%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLS HHNMVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSGHHNMVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDV 283
DEHMELDDLPELQAVQSD TQSAIYQLSSD+
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDM 91
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +3
Query: 735 MWKILPEPKAVIMRKISRWALTRAMVLMV 821
M KIL EPKAVIMRKIS+WALTRAMVLMV
Sbjct: 91 MLKILLEPKAVIMRKISKWALTRAMVLMV 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,005,108
Number of extensions: 1155823
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3129
Number of HSP's successfully gapped: 6
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130311.1| PREDICTED: HMG box-containing protein 1 isof... 713 0.0
Alignment gi|XP_003357556.1| PREDICTED: HMG box-containing protein 1 isof... 704 0.0
>ref|XP_003130311.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Sus scrofa].
Length = 523
Score = 713 bits (1840), Expect = 0.0
Identities = 336/339 (99%), Positives = 337/339 (99%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW
Sbjct: 61 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK 550
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWK 180
Query: 551 EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 730
EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW
Sbjct: 181 EETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEW 240
Query: 731 QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 910
QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL
Sbjct: 241 QDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGL 300
Query: 911 LTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 301 LTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHV 339
>ref|XP_003357556.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Sus scrofa].
Length = 541
Score = 704 bits (1816), Expect = 0.0
Identities = 331/334 (99%), Positives = 332/334 (99%)
Frame = +2
Query: 26 SEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHME 205
SEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHME
Sbjct: 24 SEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHME 83
Query: 206 LDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELA 385
LDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELA
Sbjct: 84 LDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELA 143
Query: 386 NIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWKEETPV 565
NIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWKEETPV
Sbjct: 144 NIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSKSEPGFPHHHWKEETPV 203
Query: 566 RHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVED 745
RHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVED
Sbjct: 204 RHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVED 263
Query: 746 FARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVEC 925
FARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVEC
Sbjct: 264 FARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVEC 323
Query: 926 KLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
KLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 324 KLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHV 357
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,458,784
Number of extensions: 714572
Number of successful extensions: 1947
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1947
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_818774.2| HMG box-containing protein 1 isoform 2 [Mus mus... 668 0.0
Alignment gi|NP_694878.2| HMG box-containing protein 1 isoform 1 [Mus mus... 668 0.0
>ref|NP_818774.2| HMG box-containing protein 1 isoform 2 [Mus musculus].
Length = 474
Score = 668 bits (1723), Expect = 0.0
Identities = 317/340 (93%), Positives = 324/340 (95%), Gaps = 1/340 (0%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKR GM+DSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRAPGMSDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSD TQSAIYQLSSDVSHQEYPR SW+QNTSDI ENT+RE+EVDW
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDVSHQEYPRSSWSQNTSDIPENTHREDEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS-KSEPGFPHHHW 547
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS KS P FPH HW
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSGPAFPHDHW 180
Query: 548 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKE 727
KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPST WHCFLKGTRLCFHK SNKE
Sbjct: 181 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTIWHCFLKGTRLCFHKESNKE 240
Query: 728 WQDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG 907
WQDVEDFAR CDNEE++QMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
Sbjct: 241 WQDVEDFARAASCDNEEEIQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG 300
Query: 908 LLTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LLTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 301 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHI 340
>ref|NP_694878.2| HMG box-containing protein 1 isoform 1 [Mus musculus].
Length = 526
Score = 668 bits (1723), Expect = 0.0
Identities = 317/340 (93%), Positives = 324/340 (95%), Gaps = 1/340 (0%)
Frame = +2
Query: 11 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSC 190
MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKR GM+DSLELLQCNENLPSSPGYNSC
Sbjct: 1 MATGLSEHHNMVWEVKTNQMPNAVQKLLLVMDKRAPGMSDSLELLQCNENLPSSPGYNSC 60
Query: 191 DEHMELDDLPELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDW 370
DEHMELDDLPELQAVQSD TQSAIYQLSSDVSHQEYPR SW+QNTSDI ENT+RE+EVDW
Sbjct: 61 DEHMELDDLPELQAVQSDPTQSAIYQLSSDVSHQEYPRSSWSQNTSDIPENTHREDEVDW 120
Query: 371 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS-KSEPGFPHHHW 547
LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS KS P FPH HW
Sbjct: 121 LTELANIATSPQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSGPAFPHDHW 180
Query: 548 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKE 727
KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPST WHCFLKGTRLCFHK SNKE
Sbjct: 181 KEETPVRHERANSESESGIFCMSSLSDDDDLGWCNSWPSTIWHCFLKGTRLCFHKESNKE 240
Query: 728 WQDVEDFARTEGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG 907
WQDVEDFAR CDNEE++QMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG
Sbjct: 241 WQDVEDFARAASCDNEEEIQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDG 300
Query: 908 LLTVECKLDHPFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
LLTVECKLDHPFYVKNKGWSSFYPSLTVV HGIPCCEI +
Sbjct: 301 LLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEIHI 340
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,355,817
Number of extensions: 995140
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2729
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036389.2| HMG box-containing protein 1 [Homo sapiens]. 665 0.0
>ref|NP_036389.2| HMG box-containing protein 1 [Homo sapiens].
Length = 514
Score = 665 bits (1716), Expect = 0.0
Identities = 314/330 (95%), Positives = 317/330 (96%), Gaps = 1/330 (0%)
Frame = +2
Query: 41 MVWEVKTNQMPNAVQKLLLVMDKRTSGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 220
MVWEVKTNQMPNAVQKLLLVMDKR SGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP
Sbjct: 1 MVWEVKTNQMPNAVQKLLLVMDKRASGMNDSLELLQCNENLPSSPGYNSCDEHMELDDLP 60
Query: 221 ELQAVQSDSTQSAIYQLSSDVSHQEYPRPSWNQNTSDISENTYRENEVDWLTELANIATS 400
ELQAVQSD TQS +YQLSSDVSHQEYPR SWNQNTSDI E TYRENEVDWLTELANIATS
Sbjct: 61 ELQAVQSDPTQSGMYQLSSDVSHQEYPRSSWNQNTSDIPETTYRENEVDWLTELANIATS 120
Query: 401 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS-KSEPGFPHHHWKEETPVRHER 577
PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSS KSEP FPHHHWKEETPVRHER
Sbjct: 121 PQSPLMQCSFYNRSSPVHIIATSKSLHSYARPPPVSSSSKSEPAFPHHHWKEETPVRHER 180
Query: 578 ANSESESGIFCMSSLSDDDDLGWCNSWPSTAWHCFLKGTRLCFHKGSNKEWQDVEDFART 757
ANSESESGIFCMSSLSDDDDLGWCNSWPST WHCFLKGTRLCFHKGSNKEWQDVEDFAR
Sbjct: 181 ANSESESGIFCMSSLSDDDDLGWCNSWPSTVWHCFLKGTRLCFHKGSNKEWQDVEDFARA 240
Query: 758 EGCDNEEDLQMGTHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH 937
EGCDNEEDLQMG HKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH
Sbjct: 241 EGCDNEEDLQMGIHKGYGSDGLKLLSHEESVSFGESVLKLTFDPGTVEDGLLTVECKLDH 300
Query: 938 PFYVKNKGWSSFYPSLTVVXHGIPCCEIQL 1027
PFYVKNKGWSSFYPSLTVV HGIPCCE+ +
Sbjct: 301 PFYVKNKGWSSFYPSLTVVQHGIPCCEVHI 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,494,023
Number of extensions: 1161580
Number of successful extensions: 3380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3370
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014357
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,690,584
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 0
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)