Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685835.1| PREDICTED: UBX domain protein 10-like [Bos t... 345 4e-95
Alignment gi|XP_581276.4| PREDICTED: UBX domain protein 10 [Bos taurus]. 345 4e-95
>ref|XP_002685835.1| PREDICTED: UBX domain protein 10-like [Bos taurus].
Length = 301
Score = 345 bits (884), Expect = 4e-95
Identities = 179/278 (64%), Positives = 207/278 (74%), Gaps = 1/278 (0%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPE-VX 246
MATEAPVNIAPPECS STA D F WQ DSLNMHV RPKSAKGRTRP L + G E
Sbjct: 1 MATEAPVNIAPPECSPVGSTATDSFPWQPDSLNMHVTRPKSAKGRTRPRLHKRLGMEGCS 60
Query: 247 XXXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPS 426
KPGACTP SP+Q AP EIPELLQQ P G SSSLNKYPVLPS
Sbjct: 61 GRAPASLPPAIPCESPSSHKPGACTPGSPDQGAPGEIPELLQQAPFGVSSSLNKYPVLPS 120
Query: 427 IKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPK 606
I R++L +GALET +KK +LQ SS Q L +E T++M +D +A+ CS ER+ +++ +
Sbjct: 121 INRRTLEEGALETVAKKAGSLQLSSAQALSQEEACTMKMGEKDPQAQTCSPERRVLVRTE 180
Query: 607 KQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHC 786
+Q+S GDLEEPSDQEPRLLLA+RSPSGRRFVRHFRP D LQTVV VAEHKNKA YRHC
Sbjct: 181 RQTSSRVGDLEEPSDQEPRLLLAIRSPSGRRFVRHFRPADALQTVVAVAEHKNKAAYRHC 240
Query: 787 SIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDRE 900
SIETM VPRRRFSDL+KSLQ+CGI ++S LGI++E+ E
Sbjct: 241 SIETMGVPRRRFSDLSKSLQDCGIPNKSVLGISQEEGE 278
>ref|XP_581276.4| PREDICTED: UBX domain protein 10 [Bos taurus].
Length = 301
Score = 345 bits (884), Expect = 4e-95
Identities = 179/278 (64%), Positives = 207/278 (74%), Gaps = 1/278 (0%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPE-VX 246
MATEAPVNIAPPECS STA D F WQ DSLNMHV RPKSAKGRTRP L + G E
Sbjct: 1 MATEAPVNIAPPECSPVGSTATDSFPWQPDSLNMHVTRPKSAKGRTRPRLHKRLGMEGCS 60
Query: 247 XXXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPS 426
KPGACTP SP+Q AP EIPELLQQ P G SSSLNKYPVLPS
Sbjct: 61 GRAPASLPPAIPCESPSSHKPGACTPGSPDQGAPGEIPELLQQAPFGVSSSLNKYPVLPS 120
Query: 427 IKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPK 606
I R++L +GALET +KK +LQ SS Q L +E T++M +D +A+ CS ER+ +++ +
Sbjct: 121 INRRTLEEGALETVAKKAGSLQLSSAQALSQEEACTMKMGEKDPQAQTCSPERRVLVRTE 180
Query: 607 KQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHC 786
+Q+S GDLEEPSDQEPRLLLA+RSPSGRRFVRHFRP D LQTVV VAEHKNKA YRHC
Sbjct: 181 RQTSSRVGDLEEPSDQEPRLLLAIRSPSGRRFVRHFRPADALQTVVAVAEHKNKAAYRHC 240
Query: 787 SIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDRE 900
SIETM VPRRRFSDL+KSLQ+CGI ++S LGI++E+ E
Sbjct: 241 SIETMGVPRRRFSDLSKSLQDCGIPNKSVLGISQEEGE 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,765,237
Number of extensions: 1416525
Number of successful extensions: 7168
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7132
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014360
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544521.1| PREDICTED: similar to UBX domain containing 3 [... 331 5e-91
>ref|XP_544521.1| PREDICTED: similar to UBX domain containing 3 [Canis familiaris].
Length = 284
Score = 331 bits (849), Expect = 5e-91
Identities = 170/284 (59%), Positives = 205/284 (72%), Gaps = 4/284 (1%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPE--- 240
MATEAPVNIA PE S S A DGF W+ DS MHV RPKSAKGR RP +PQGP+
Sbjct: 1 MATEAPVNIAAPERSPVGSPAADGFAWRPDSAKMHVPRPKSAKGRPRPRPHKPQGPQGAQ 60
Query: 241 -VXXXXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPV 417
Q+PGAC P+SPNQ APDEIPELLQQ+P+G+SSSLNKY V
Sbjct: 61 LCSPRAPATLPPAVPCESPSSQRPGACAPRSPNQGAPDEIPELLQQVPMGASSSLNKYRV 120
Query: 418 LPSIKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVM 597
LPSI RK+L +G+++ + K +LQ SS+Q LY +ETGT++ S ED+R R CS ER ++
Sbjct: 121 LPSINRKTLEEGSVDAVATKAGSLQLSSIQALYREETGTMKASEEDSRVRACSPERTVIV 180
Query: 598 QPKKQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATY 777
+ ++Q S A DLEEPSD E RLLLA+RSPSGRRFV HFRPTD LQTVV VAE N+ATY
Sbjct: 181 RTRRQMSSRARDLEEPSDGEARLLLAIRSPSGRRFVHHFRPTDALQTVVAVAERNNQATY 240
Query: 778 RHCSIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
HCS+ETMEVPRRRFSDL++SLQEC I H+S LGI++E+ + P
Sbjct: 241 HHCSVETMEVPRRRFSDLSRSLQECKIPHKSVLGISQEEEDREP 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,543,474
Number of extensions: 1451378
Number of successful extensions: 7178
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7136
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127719.1| PREDICTED: UBX domain-containing protein 10-... 521 e-148
Alignment gi|XP_003127718.1| PREDICTED: UBX domain-containing protein 10-... 521 e-148
Alignment gi|XP_003127717.1| PREDICTED: UBX domain-containing protein 10-... 521 e-148
>ref|XP_003127719.1| PREDICTED: UBX domain-containing protein 10-like isoform 3 [Sus
scrofa].
Length = 280
Score = 521 bits (1342), Expect = e-148
Identities = 261/280 (93%), Positives = 261/280 (93%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVXX 249
MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEV
Sbjct: 1 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVCS 60
Query: 250 XXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 429
QKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI
Sbjct: 61 SRAPSPPPAIPCESPSSQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 120
Query: 430 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 609
KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK
Sbjct: 121 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 180
Query: 610 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 789
QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS
Sbjct: 181 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 240
Query: 790 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP
Sbjct: 241 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 280
>ref|XP_003127718.1| PREDICTED: UBX domain-containing protein 10-like isoform 2 [Sus
scrofa].
Length = 280
Score = 521 bits (1342), Expect = e-148
Identities = 261/280 (93%), Positives = 261/280 (93%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVXX 249
MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEV
Sbjct: 1 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVCS 60
Query: 250 XXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 429
QKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI
Sbjct: 61 SRAPSPPPAIPCESPSSQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 120
Query: 430 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 609
KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK
Sbjct: 121 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 180
Query: 610 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 789
QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS
Sbjct: 181 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 240
Query: 790 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP
Sbjct: 241 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 280
>ref|XP_003127717.1| PREDICTED: UBX domain-containing protein 10-like isoform 1 [Sus
scrofa].
Length = 280
Score = 521 bits (1342), Expect = e-148
Identities = 261/280 (93%), Positives = 261/280 (93%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVXX 249
MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEV
Sbjct: 1 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVCS 60
Query: 250 XXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 429
QKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI
Sbjct: 61 SRAPSPPPAIPCESPSSQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 120
Query: 430 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 609
KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK
Sbjct: 121 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 180
Query: 610 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 789
QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS
Sbjct: 181 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 240
Query: 790 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP
Sbjct: 241 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,296,852
Number of extensions: 915726
Number of successful extensions: 4704
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4667
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848786.1| UBX domain-containing protein 10 [Mus musculus]. 333 2e-91
>ref|NP_848786.1| UBX domain-containing protein 10 [Mus musculus].
Length = 277
Score = 333 bits (853), Expect = 2e-91
Identities = 175/282 (62%), Positives = 211/282 (74%), Gaps = 2/282 (0%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGP-EVX 246
MA EAPVN APPE ST VSTA D WQ SL MHVIRPKSAKGR RP+L RPQG +
Sbjct: 1 MAIEAPVNFAPPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGS 60
Query: 247 XXXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELL-QQMPIGSSSSLNKYPVLP 423
QKPG C S +Q APDE+PELL QQ P ++SSLN+YPVLP
Sbjct: 61 PSALSSSPPPRSSGSPSNQKPGVCATVSTSQGAPDEMPELLLQQAPTRTASSLNRYPVLP 120
Query: 424 SIKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQP 603
SI R+SL GA++T + KTS+LQ SS+Q LY +++ S ED+R + C+LE+KF+++
Sbjct: 121 SINRRSLEVGAVDTVASKTSSLQLSSVQALYQEDS-----SQEDSRTQVCALEKKFIIRT 175
Query: 604 KKQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRH 783
K+QSS A ++EEPSD+EPRLLLAVRSPSG+RFVR+FRP+DDLQTV+ VAE KNKATY+H
Sbjct: 176 KRQSSSRASNIEEPSDEEPRLLLAVRSPSGQRFVRYFRPSDDLQTVLEVAEQKNKATYQH 235
Query: 784 CSIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
CSIETMEVPRRRFSDLTKSLQECGI H+S LGI++E+ E WP
Sbjct: 236 CSIETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEAWP 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,553,634
Number of extensions: 1169396
Number of successful extensions: 5464
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5428
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689589.1| UBX domain-containing protein 10 [Homo sapiens]. 395 e-110
>ref|NP_689589.1| UBX domain-containing protein 10 [Homo sapiens].
Length = 280
Score = 395 bits (1016), Expect = e-110
Identities = 197/280 (70%), Positives = 225/280 (80%)
Frame = +1
Query: 70 MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVXX 249
MATEAPVNIAPPECST VSTAVD +WQ +SLNMH+IRPKSAKGRTRPSL + QG EV
Sbjct: 1 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA 60
Query: 250 XXXXXXXXXXXXXXXXXQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSI 429
QKPGAC PKSPNQ A DEIPEL QQ+P G+SSSLNKYPVLPSI
Sbjct: 61 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI 120
Query: 430 KRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKK 609
RK+L + A+ET +KK S+LQ SS++ LY ETGT++ S ED+RAR C++ERKF+++ KK
Sbjct: 121 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK 180
Query: 610 QSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCS 789
Q S AG+LEEPSDQEPRLLLAVRSP+G+RFVRHFRPTDDLQT+V VAE KNK +YRHCS
Sbjct: 181 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS 240
Query: 790 IETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP 909
IETMEVPRRRFSDLTKSLQEC I H+S LGI+ ED EGWP
Sbjct: 241 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,634,215
Number of extensions: 1419746
Number of successful extensions: 6808
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6763
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014360
(963 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1723 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1723 bits (869), Expect = 0.0
Identities = 902/913 (98%), Gaps = 2/913 (0%)
Strand = Plus / Plus
Query: 53 aggggtcttgagaagcaatggccacagaagcccctgtgaacatagnnnnnnnngaatgca 112
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 72653611 aggggtcttgagaagcaatggccacagaagcccctgtgaacatagccccccccgaatgca 72653670
Query: 113 gcactgcagtcagcacagcagttgacggcttcctttggcagcgggactcgctcaacatgc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653671 gcactgcagtcagcacagcagttgacggcttcctttggcagcgggactcgctcaacatgc 72653730
Query: 173 atgtcataaggcccaagtccgccaagggccgcacccggcccagtctgcccagaccccagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653731 atgtcataaggcccaagtccgccaagggccgcacccggcccagtctgcccagaccccagg 72653790
Query: 233 gcccggaggtgtgctccagccgtgcgccgtctccgcctccagccattccctgtgagtcac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653791 gcccggaggtgtgctccagccgtgcgccgtctccgcctccagccattccctgtgagtcac 72653850
Query: 293 caagcagccagaaaccaggagcctgcacacccaagtctcccaaccagtgggctcccgatg 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653851 cgagcagccagaaaccaggagcctgcacacccaagtctcccaaccagtgggctcccgatg 72653910
Query: 353 agatcccggagctgctgcagcagatgcccattgggtcctcctcttccctcaataaatacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653911 agatcccggagctgctgcagcagatgcccattgggtcctcctcttccctcaataaatacc 72653970
Query: 413 ccgtcctcccttccatcaagaggaagagcctggcgcagggggccctggaaacaacctcga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72653971 ccgtcctcccttccatcaagaggaagagcctggcgcagggggccctggaaacaacctcga 72654030
Query: 473 aaaagaccagtgccctgcagcggagcagcctccaaggtctttaccccaaggagacaggca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654031 aaaagaccagtgccctgcagcggagcagcctccaaggtctttaccccaaggagacaggca 72654090
Query: 533 ccctgaggatgagcggagaagatgccagagctcggccttgttccctggagaggaagttcg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654091 ccctgaggatgagcggagaagatgccagagctcggccttgttccctggagaggaagttcg 72654150
Query: 593 tgatgcagcccaagaagcaaagctcctatggggctggagatctggaggaaccgtcagatc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654151 tgatgcagcccaagaagcaaagctcctatggggctggagatctggaggaaccgtcagatc 72654210
Query: 653 aagagccaaggctgctgcttgccgtcaggtcaccgtcaggccgcaggttcgttcgccact 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654211 aagagccaaggctgctgcttgccgtcaggtcaccgtcaggccgcaggttcgttcgccact 72654270
Query: 713 tccggccaaccgatgacttgcaaactgtcgtcactgtggccgaacacaagaacaaggcca 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654271 tccggccaaccgatgacttgcaaactgtcgtcactgtggccgaacacaagaacaaggcca 72654330
Query: 773 cttaccgacactgcagcattgaaacgatggaggtgccccggagacgcttctctgacctca 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654331 cttaccgacactgcagcattgaaacgatggaggtgccccggagacgcttctctgacctca 72654390
Query: 833 ccaagtccctgcaggagtgtggaatcgcccacaggtcggcgctgggcatcgcccgggaag 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72654391 ccaagtccctgcaggagtgtggaatcgcccacaggtcggcgctgggcatcgcccgggaag 72654450
Query: 893 acagggagggatggccctgagtccgctgctgccca-ccagggtcctgggtctctgagc-a 950
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 72654451 acagggagggatggccctgagtccgctgctgcccagccagggtcctgggtctctgagcaa 72654510
Query: 951 ggagtatccttgg 963
|||||||||||||
Sbjct: 72654511 ggagtatccttgg 72654523
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 2 agcgggactgaacccagctacggtggcggtggcggatggagcattgctgcgagg 55
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72647736 agcgggactgaacccagctacggtggcggtggcggatggagcattgctgcgagg 72647789
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,349,948
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 3
Length of query: 963
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 942
Effective length of database: 2,808,413,156
Effective search space: 2645525192952
Effective search space used: 2645525192952
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)