Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852183.1| PREDICTED: similar to nucleotide binding protei... 467 e-132
Alignment gi|XP_865094.1| PREDICTED: similar to nucleotide binding protei... 466 e-131
Alignment gi|XP_865131.1| PREDICTED: similar to nucleotide binding protei... 456 e-128
Alignment gi|XP_865174.1| PREDICTED: similar to nucleotide binding protei... 456 e-128
Alignment gi|XP_865151.1| PREDICTED: similar to nucleotide binding protei... 446 e-125
Alignment gi|XP_865112.1| PREDICTED: similar to nucleotide binding protei... 372 e-103
Alignment gi|XP_536975.1| PREDICTED: similar to Nucleotide-binding protei... 279 3e-75
Alignment gi|XP_863623.1| PREDICTED: similar to Nucleotide-binding protei... 255 5e-68
Alignment gi|XP_863598.1| PREDICTED: similar to Nucleotide-binding protei... 223 3e-58
Alignment gi|XP_851681.1| PREDICTED: similar to Protein C14orf127 homolog... 176 4e-44
>ref|XP_852183.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 1 [Canis familiaris].
Length = 271
Score = 467 bits (1202), Expect = e-132
Identities = 230/270 (85%), Positives = 241/270 (89%)
Frame = +1
Query: 37 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR 216
M AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALALRH GKKVG+LDVDLCGPSIPR
Sbjct: 1 MGTAAGPGNLAGVRHILLVLSGKGGVGKSTISAELALALRHAGKKVGILDVDLCGPSIPR 60
Query: 217 MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 396
MLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVWRGPKKNALIKQFVSD
Sbjct: 61 MLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKNALIKQFVSD 120
Query: 397 VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV 576
VAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQAVSVGDVRRELTFCRK
Sbjct: 121 VAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQAVSVGDVRRELTFCRKT 180
Query: 577 GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR 756
GL+V+G+VENMSGFVCPHCAECT+VFS+GGGEELA GVPFLGSVPLDPEL SLEEGR
Sbjct: 181 GLQVLGVVENMSGFVCPHCAECTNVFSQGGGEELATLAGVPFLGSVPLDPELCGSLEEGR 240
Query: 757 DLARGFPDSPAFPVLSSIAQRILDETPVGL 846
D R FP S AFP L SIAQ++L + P L
Sbjct: 241 DFIRDFPKSSAFPALFSIAQKVLSQAPARL 270
>ref|XP_865094.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 2 [Canis familiaris].
Length = 322
Score = 466 bits (1199), Expect = e-131
Identities = 230/273 (84%), Positives = 241/273 (88%)
Frame = +1
Query: 28 PVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPS 207
P AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALALRH GKKVG+LDVDLCGPS
Sbjct: 49 PRSTPAAPGPGNLAGVRHILLVLSGKGGVGKSTISAELALALRHAGKKVGILDVDLCGPS 108
Query: 208 IPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQF 387
IPRMLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVWRGPKKNALIKQF
Sbjct: 109 IPRMLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKNALIKQF 168
Query: 388 VSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFC 567
VSDVAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQAVSVGDVRRELTFC
Sbjct: 169 VSDVAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQAVSVGDVRRELTFC 228
Query: 568 RKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLE 747
RK GL+V+G+VENMSGFVCPHCAECT+VFS+GGGEELA GVPFLGSVPLDPEL SLE
Sbjct: 229 RKTGLQVLGVVENMSGFVCPHCAECTNVFSQGGGEELATLAGVPFLGSVPLDPELCGSLE 288
Query: 748 EGRDLARGFPDSPAFPVLSSIAQRILDETPVGL 846
EGRD R FP S AFP L SIAQ++L + P L
Sbjct: 289 EGRDFIRDFPKSSAFPALFSIAQKVLSQAPARL 321
>ref|XP_865131.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 4 [Canis familiaris].
Length = 336
Score = 456 bits (1174), Expect = e-128
Identities = 230/287 (80%), Positives = 241/287 (83%), Gaps = 14/287 (4%)
Frame = +1
Query: 28 PVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKV----------- 174
P AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALALRH GKKV
Sbjct: 49 PRSTPAAPGPGNLAGVRHILLVLSGKGGVGKSTISAELALALRHAGKKVSPPPSHRGPQP 108
Query: 175 ---GLLDVDLCGPSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAV 345
G+LDVDLCGPSIPRMLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAV
Sbjct: 109 LPVGILDVDLCGPSIPRMLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAV 168
Query: 346 VWRGPKKNALIKQFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQ 525
VWRGPKKNALIKQFVSDVAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQ
Sbjct: 169 VWRGPKKNALIKQFVSDVAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQ 228
Query: 526 AVSVGDVRRELTFCRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFL 705
AVSVGDVRRELTFCRK GL+V+G+VENMSGFVCPHCAECT+VFS+GGGEELA GVPFL
Sbjct: 229 AVSVGDVRRELTFCRKTGLQVLGVVENMSGFVCPHCAECTNVFSQGGGEELATLAGVPFL 288
Query: 706 GSVPLDPELARSLEEGRDLARGFPDSPAFPVLSSIAQRILDETPVGL 846
GSVPLDPEL SLEEGRD R FP S AFP L SIAQ++L + P L
Sbjct: 289 GSVPLDPELCGSLEEGRDFIRDFPKSSAFPALFSIAQKVLSQAPARL 335
>ref|XP_865174.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 6 [Canis familiaris].
Length = 323
Score = 456 bits (1172), Expect = e-128
Identities = 227/274 (82%), Positives = 239/274 (87%), Gaps = 1/274 (0%)
Frame = +1
Query: 28 PVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRH-TGKKVGLLDVDLCGP 204
P AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALALRH +VG+LDVDLCGP
Sbjct: 49 PRSTPAAPGPGNLAGVRHILLVLSGKGGVGKSTISAELALALRHPASSQVGILDVDLCGP 108
Query: 205 SIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQ 384
SIPRMLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVWRGPKKNALIKQ
Sbjct: 109 SIPRMLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKNALIKQ 168
Query: 385 FVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTF 564
FVSDVAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQAVSVGDVRRELTF
Sbjct: 169 FVSDVAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQAVSVGDVRRELTF 228
Query: 565 CRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSL 744
CRK GL+V+G+VENMSGFVCPHCAECT+VFS+GGGEELA GVPFLGSVPLDPEL SL
Sbjct: 229 CRKTGLQVLGVVENMSGFVCPHCAECTNVFSQGGGEELATLAGVPFLGSVPLDPELCGSL 288
Query: 745 EEGRDLARGFPDSPAFPVLSSIAQRILDETPVGL 846
EEGRD R FP S AFP L SIAQ++L + P L
Sbjct: 289 EEGRDFIRDFPKSSAFPALFSIAQKVLSQAPARL 322
>ref|XP_865151.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 5 [Canis familiaris].
Length = 334
Score = 446 bits (1146), Expect = e-125
Identities = 225/285 (78%), Positives = 237/285 (83%), Gaps = 12/285 (4%)
Frame = +1
Query: 28 PVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL------------RHTGKK 171
P AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALAL +
Sbjct: 49 PRSTPAAPGPGNLAGVRHILLVLSGKGGVGKSTISAELALALPSARLAAPARRGHPASSQ 108
Query: 172 VGLLDVDLCGPSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVW 351
VG+LDVDLCGPSIPRMLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVW
Sbjct: 109 VGILDVDLCGPSIPRMLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAVVW 168
Query: 352 RGPKKNALIKQFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAV 531
RGPKKNALIKQFVSDVAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQAV
Sbjct: 169 RGPKKNALIKQFVSDVAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQAV 228
Query: 532 SVGDVRRELTFCRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGS 711
SVGDVRRELTFCRK GL+V+G+VENMSGFVCPHCAECT+VFS+GGGEELA GVPFLGS
Sbjct: 229 SVGDVRRELTFCRKTGLQVLGVVENMSGFVCPHCAECTNVFSQGGGEELATLAGVPFLGS 288
Query: 712 VPLDPELARSLEEGRDLARGFPDSPAFPVLSSIAQRILDETPVGL 846
VPLDPEL SLEEGRD R FP S AFP L SIAQ++L + P L
Sbjct: 289 VPLDPELCGSLEEGRDFIRDFPKSSAFPALFSIAQKVLSQAPARL 333
>ref|XP_865112.1| PREDICTED: similar to nucleotide binding protein 2 (predicted)
isoform 3 [Canis familiaris].
Length = 291
Score = 372 bits (954), Expect = e-103
Identities = 190/242 (78%), Positives = 197/242 (81%), Gaps = 11/242 (4%)
Frame = +1
Query: 28 PVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPS 207
P AA PGNLAGVRHI+LVLSGKGGVGKSTIS ELALALRH GKKVG+LDVDLCGPS
Sbjct: 49 PRSTPAAPGPGNLAGVRHILLVLSGKGGVGKSTISAELALALRHAGKKVGILDVDLCGPS 108
Query: 208 IPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQF 387
IPRMLR QGRAVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVWRGPKKNALIKQF
Sbjct: 109 IPRMLRAQGRAVHQCDGGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKNALIKQF 168
Query: 388 VSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFC 567
VSDVAWG LDYLVVDTPPGTSDEHMA VDALRPY PLGALVVTTPQAVSVGDVRRELTFC
Sbjct: 169 VSDVAWGQLDYLVVDTPPGTSDEHMATVDALRPYSPLGALVVTTPQAVSVGDVRRELTFC 228
Query: 568 RKVGLRVIGLVENMSGFVCPHCA-----------ECTHVFSRGGGEELARHTGVPFLGSV 714
RK GL+V+G+VENMSGFVCPHCA C + G AR GV F
Sbjct: 229 RKTGLQVLGVVENMSGFVCPHCAVSHEDLAGWGQACHGPGGQPGTHPRARGGGVSFRPRA 288
Query: 715 PL 720
PL
Sbjct: 289 PL 290
>ref|XP_536975.1| PREDICTED: similar to Nucleotide-binding protein 1 (NBP 1) isoform
1 [Canis familiaris].
Length = 320
Score = 279 bits (713), Expect = 3e-75
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 3/253 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L +V LLD+D+CGPSIP+++ ++G VHQ
Sbjct: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQVHQ 112
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PVFV+ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG +DYL+V
Sbjct: 113 SGSGWSPVFVEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIV 170
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++AV L GA+++TTPQ VS+ DVR+E+ FC KV L +IG+VENM
Sbjct: 171 DTPPGTSDEHLSAVQYLSSTHIDGAVIITTPQEVSLQDVRKEINFCHKVKLPIIGVVENM 230
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
SGF+CP C + + +F + GG E + ++ +P LG VPLDP + +S ++G+ PDS
Sbjct: 231 SGFICPKCKKESQIFPPTTGGAEVMCQNLKIPLLGKVPLDPHIGKSCDKGQSFLIDAPDS 290
Query: 784 PAFPVLSSIAQRI 822
PA SI QRI
Sbjct: 291 PATLAYRSIIQRI 303
>ref|XP_863623.1| PREDICTED: similar to Nucleotide-binding protein 1 (NBP 1) isoform
3 [Canis familiaris].
Length = 309
Score = 255 bits (651), Expect = 5e-68
Identities = 131/253 (51%), Positives = 172/253 (67%), Gaps = 3/253 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L +V LLD+D+CGPSIP+++ ++G
Sbjct: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQ--- 109
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
FV+ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG +DYL+V
Sbjct: 110 --------FVEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIV 159
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++AV L GA+++TTPQ VS+ DVR+E+ FC KV L +IG+VENM
Sbjct: 160 DTPPGTSDEHLSAVQYLSSTHIDGAVIITTPQEVSLQDVRKEINFCHKVKLPIIGVVENM 219
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
SGF+CP C + + +F + GG E + ++ +P LG VPLDP + +S ++G+ PDS
Sbjct: 220 SGFICPKCKKESQIFPPTTGGAEVMCQNLKIPLLGKVPLDPHIGKSCDKGQSFLIDAPDS 279
Query: 784 PAFPVLSSIAQRI 822
PA SI QRI
Sbjct: 280 PATLAYRSIIQRI 292
>ref|XP_863598.1| PREDICTED: similar to Nucleotide-binding protein 1 (NBP 1) isoform
2 [Canis familiaris].
Length = 218
Score = 223 bits (567), Expect = 3e-58
Identities = 107/201 (53%), Positives = 141/201 (70%), Gaps = 2/201 (0%)
Frame = +1
Query: 226 VQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAW 405
++G VHQ GW PVFV+ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV W
Sbjct: 3 LEGEQVHQSGSGWSPVFVEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDW 60
Query: 406 GPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLR 585
G +DYL+VDTPPGTSDEH++AV L GA+++TTPQ VS+ DVR+E+ FC KV L
Sbjct: 61 GEVDYLIVDTPPGTSDEHLSAVQYLSSTHIDGAVIITTPQEVSLQDVRKEINFCHKVKLP 120
Query: 586 VIGLVENMSGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRD 759
+IG+VENMSGF+CP C + + +F + GG E + ++ +P LG VPLDP + +S ++G+
Sbjct: 121 IIGVVENMSGFICPKCKKESQIFPPTTGGAEVMCQNLKIPLLGKVPLDPHIGKSCDKGQS 180
Query: 760 LARGFPDSPAFPVLSSIAQRI 822
PDSPA SI QRI
Sbjct: 181 FLIDAPDSPATLAYRSIIQRI 201
>ref|XP_851681.1| PREDICTED: similar to Protein C14orf127 homolog [Canis familiaris].
Length = 424
Score = 176 bits (445), Expect = 4e-44
Identities = 99/243 (40%), Positives = 145/243 (59%), Gaps = 3/243 (1%)
Frame = +1
Query: 64 LAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLDVDLCGPSIPRMLRVQGR 237
+ GV+ +I+V SGKGGVGKST + LAL L + K VGLLDVD+ GPSIP+M+ ++G
Sbjct: 119 IEGVKQVIVVASGKGGVGKSTTAVNLALGLAANDSSKAVGLLDVDVYGPSIPKMMNLKGN 178
Query: 238 AVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLD 417
+ P+ GI+ MS+GFL+E+ VVWRG + I++ + V WGPLD
Sbjct: 179 PELSQNNLMRPLL---NYGIACMSMGFLIEET-APVVWRGLMVMSAIEKLLRQVDWGPLD 234
Query: 418 YLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGDVRRELTFCRKVGLRVIG 594
YLVVDTPPGT D ++ + P+ GA++V+TPQ +++ D + RKV + V+G
Sbjct: 235 YLVVDTPPGTGDVQLSISQNI----PISGAVIVSTPQDIALVDAHKGAEMFRKVHVPVLG 290
Query: 595 LVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGF 774
L++NMS F CP C TH+F G LA+ + LG +PL + + + G+ +
Sbjct: 291 LIQNMSVFQCPKCKHRTHIFGADGARRLAQTLDLDILGDIPLHLNIRETSDTGQPIVFSQ 350
Query: 775 PDS 783
P+S
Sbjct: 351 PES 353
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,398,588
Number of extensions: 1159359
Number of successful extensions: 5813
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5786
Number of HSP's successfully gapped: 10
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014403
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029677.1| cytosolic Fe-S cluster assembly factor NUBP2... 493 e-140
Alignment gi|NP_001068763.1| cytosolic Fe-S cluster assembly factor NUBP1... 277 9e-75
Alignment gi|NP_001179971.1| nucleotide-binding protein-like [Bos taurus]. 175 6e-44
Alignment gi|XP_002696747.1| PREDICTED: nucleotide binding protein-like [... 175 6e-44
>ref|NP_001029677.1| cytosolic Fe-S cluster assembly factor NUBP2 [Bos taurus].
Length = 271
Score = 493 bits (1270), Expect = e-140
Identities = 241/270 (89%), Positives = 254/270 (94%)
Frame = +1
Query: 37 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR 216
MEAAAEPGNLAGVRHI+LVLSGKGGVGKSTISTELALALRH GKKVG+LDVDLCGPSIPR
Sbjct: 1 MEAAAEPGNLAGVRHIVLVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPR 60
Query: 217 MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 396
MLR QGRAVHQ D GW+PVFVD+EQ ISLMSVGFLLE+PDEAVVWRGPKKNALIKQFVSD
Sbjct: 61 MLRAQGRAVHQGDSGWVPVFVDREQSISLMSVGFLLEQPDEAVVWRGPKKNALIKQFVSD 120
Query: 397 VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV 576
VAWG LDYL+VDTPPGTSDEHMA VDALRP+ PLGALVVTTPQAVSVGDVRRELTFCRKV
Sbjct: 121 VAWGQLDYLLVDTPPGTSDEHMAVVDALRPHSPLGALVVTTPQAVSVGDVRRELTFCRKV 180
Query: 577 GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR 756
GLRVIGLVENMSGFVCPHC+ECT+VFS+GGGEELARH GVPFLGSVPLDPEL RSLE+GR
Sbjct: 181 GLRVIGLVENMSGFVCPHCSECTNVFSKGGGEELARHAGVPFLGSVPLDPELTRSLEDGR 240
Query: 757 DLARGFPDSPAFPVLSSIAQRILDETPVGL 846
D + FPDSPAFP LSSIAQ+IL ETP GL
Sbjct: 241 DFIQDFPDSPAFPALSSIAQKILSETPAGL 270
>ref|NP_001068763.1| cytosolic Fe-S cluster assembly factor NUBP1 [Bos taurus].
Length = 320
Score = 277 bits (709), Expect = 9e-75
Identities = 140/269 (52%), Positives = 184/269 (68%), Gaps = 9/269 (3%)
Frame = +1
Query: 43 AAAEPG------NLAGVRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCG 201
AAA+P + V+H ILVLSGKGGVGKST S LA L +V LLD+D+CG
Sbjct: 37 AAADPAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICG 96
Query: 202 PSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIK 381
PSIP+++ ++G VHQ GW PVF++ G+ MSVGFLL PD+AV+WRGPKKN +IK
Sbjct: 97 PSIPKIMGLEGEQVHQSGSGWSPVFLEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIK 154
Query: 382 QFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELT 561
QF+ DV WG +DYL+VDTPPGTSDEH++ V L GA+++TTPQ VS+ DVR+E++
Sbjct: 155 QFLRDVDWGEVDYLIVDTPPGTSDEHLSVVQYLTAAHIDGAVIITTPQEVSLQDVRKEIS 214
Query: 562 FCRKVGLRVIGLVENMSGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELA 735
FC KV L +IG+VENMSGF+CP C + + +F + GG E + + +P LG VPLDP +
Sbjct: 215 FCHKVKLPIIGVVENMSGFICPKCQKESQIFPPTTGGAEAMCQDLKIPLLGKVPLDPRIG 274
Query: 736 RSLEEGRDLARGFPDSPAFPVLSSIAQRI 822
+S ++G+ PDSPA SI QRI
Sbjct: 275 KSCDKGQSFLVEAPDSPATVAYRSIIQRI 303
>ref|NP_001179971.1| nucleotide-binding protein-like [Bos taurus].
Length = 331
Score = 175 bits (443), Expect = 6e-44
Identities = 104/278 (37%), Positives = 152/278 (54%), Gaps = 3/278 (1%)
Frame = +1
Query: 13 KTRGKPVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLD 186
K R + + + GV+ +I+V SGKGGVGKST + LALAL + K VGLLD
Sbjct: 46 KQRRSQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLD 105
Query: 187 VDLCGPSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKK 366
VD+ GPSIP+M+ ++G P+ GI+ MS+GFL+E+ +VWRG
Sbjct: 106 VDVYGPSIPKMMNLKGNPELSQSNLMRPLL---NYGIACMSMGFLVEET-APLVWRGLMV 161
Query: 367 NALIKQFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGD 543
+ I++ + V WG LDYLVVD PPGT D ++ + P+ GA++V+TPQ +++ D
Sbjct: 162 MSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNI----PISGAVIVSTPQDIALMD 217
Query: 544 VRRELTFCRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLD 723
+ RKV + V+GLV+NMS F CP C TH+F G LAR + LG +PL
Sbjct: 218 AHKGAEMFRKVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARRLARTLDLDILGDIPLH 277
Query: 724 PELARSLEEGRDLARGFPDSPAFPVLSSIAQRILDETP 837
+ + + G+ + P+S IA ++ P
Sbjct: 278 LNIREASDTGQPIVFSQPESDEAKAYLRIATEVVRRLP 315
>ref|XP_002696747.1| PREDICTED: nucleotide binding protein-like [Bos taurus].
Length = 331
Score = 175 bits (443), Expect = 6e-44
Identities = 104/278 (37%), Positives = 152/278 (54%), Gaps = 3/278 (1%)
Frame = +1
Query: 13 KTRGKPVRMEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLD 186
K R + + + GV+ +I+V SGKGGVGKST + LALAL + K VGLLD
Sbjct: 46 KQRRSQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLD 105
Query: 187 VDLCGPSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKK 366
VD+ GPSIP+M+ ++G P+ GI+ MS+GFL+E+ +VWRG
Sbjct: 106 VDVYGPSIPKMMNLKGNPELSQSNLMRPLL---NYGIACMSMGFLVEET-APLVWRGLMV 161
Query: 367 NALIKQFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGD 543
+ I++ + V WG LDYLVVD PPGT D ++ + P+ GA++V+TPQ +++ D
Sbjct: 162 MSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNI----PISGAVIVSTPQDIALMD 217
Query: 544 VRRELTFCRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLD 723
+ RKV + V+GLV+NMS F CP C TH+F G LAR + LG +PL
Sbjct: 218 AHKGAEMFRKVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARRLARTLDLDILGDIPLH 277
Query: 724 PELARSLEEGRDLARGFPDSPAFPVLSSIAQRILDETP 837
+ + + G+ + P+S IA ++ P
Sbjct: 278 LNIREASDTGQPIVFSQPESDEAKAYLRIATEVVRRLP 315
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,716,507
Number of extensions: 1122876
Number of successful extensions: 5756
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5715
Number of HSP's successfully gapped: 4
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124761.1| PREDICTED: cytosolic Fe-S cluster assembly f... 547 e-156
Alignment gi|XP_003354661.1| PREDICTED: cytosolic Fe-S cluster assembly f... 276 2e-74
Alignment gi|NP_001230311.1| nucleotide binding protein 1 [Sus scrofa]. 276 2e-74
Alignment gi|XP_001925166.2| PREDICTED: iron-sulfur protein NUBPL [Sus sc... 175 4e-44
Alignment gi|XP_003361597.1| PREDICTED: hypothetical protein LOC100624361... 165 3e-41
>ref|XP_003124761.1| PREDICTED: cytosolic Fe-S cluster assembly factor NUBP2-like [Sus
scrofa].
Length = 271
Score = 547 bits (1410), Expect = e-156
Identities = 271/271 (100%), Positives = 271/271 (100%)
Frame = +1
Query: 37 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR 216
MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR
Sbjct: 1 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR 60
Query: 217 MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 396
MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD
Sbjct: 61 MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 120
Query: 397 VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV 576
VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV
Sbjct: 121 VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV 180
Query: 577 GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR 756
GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR
Sbjct: 181 GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR 240
Query: 757 DLARGFPDSPAFPVLSSIAQRILDETPVGLR 849
DLARGFPDSPAFPVLSSIAQRILDETPVGLR
Sbjct: 241 DLARGFPDSPAFPVLSSIAQRILDETPVGLR 271
>ref|XP_003354661.1| PREDICTED: cytosolic Fe-S cluster assembly factor NUBP1-like,
partial [Sus scrofa].
Length = 278
Score = 276 bits (705), Expect = 2e-74
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 3/253 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L +V LLD+D+CGPSIP+++ ++G VHQ
Sbjct: 11 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQVHQ 70
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PVF++ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG LDYL+V
Sbjct: 71 SGSGWSPVFLEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGELDYLIV 128
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++AV L GA+++TTPQ VS+ DVR+E++FC KV L +IG+VENM
Sbjct: 129 DTPPGTSDEHLSAVQYLAGAHIDGAVLITTPQEVSLQDVRKEISFCHKVKLPIIGVVENM 188
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
S F+CP C + + +F + GG E + + +P LG VPLDP +A+S ++G+ PDS
Sbjct: 189 SSFLCPRCQKESQIFPPTTGGAEVMCQDLKIPLLGKVPLDPRIAKSCDKGQSFLVEAPDS 248
Query: 784 PAFPVLSSIAQRI 822
PA SI QRI
Sbjct: 249 PATLAYRSIIQRI 261
>ref|NP_001230311.1| nucleotide binding protein 1 [Sus scrofa].
Length = 320
Score = 276 bits (705), Expect = 2e-74
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 3/253 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L +V LLD+D+CGPSIP+++ ++G VHQ
Sbjct: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQVHQ 112
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PVF++ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG LDYL+V
Sbjct: 113 SGSGWSPVFLEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGELDYLIV 170
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++AV L GA+++TTPQ VS+ DVR+E++FC KV L +IG+VENM
Sbjct: 171 DTPPGTSDEHLSAVQYLAGAHIDGAVLITTPQEVSLQDVRKEISFCHKVKLPIIGVVENM 230
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
S F+CP C + + +F + GG E + + +P LG VPLDP +A+S ++G+ PDS
Sbjct: 231 SSFLCPRCQKESQIFPPTTGGAEVMCQDLKIPLLGKVPLDPRIAKSCDKGQSFLVEAPDS 290
Query: 784 PAFPVLSSIAQRI 822
PA SI QRI
Sbjct: 291 PATLAYRSIIQRI 303
>ref|XP_001925166.2| PREDICTED: iron-sulfur protein NUBPL [Sus scrofa].
Length = 319
Score = 175 bits (443), Expect = 4e-44
Identities = 102/261 (39%), Positives = 148/261 (56%), Gaps = 3/261 (1%)
Frame = +1
Query: 64 LAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLDVDLCGPSIPRMLRVQGR 237
+ GV+ +I+V SGKGGVGKST + LALAL + K +GLLDVD+ GPSIP+M+ ++G
Sbjct: 63 IEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSIPKMMNLKGN 122
Query: 238 AVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLD 417
P+ GI+ MS+GFL+E+ VVWRG + I++ + V WG LD
Sbjct: 123 PELSQSNLMRPLL---NYGIACMSMGFLVEET-APVVWRGLMVMSAIEKLLRQVDWGQLD 178
Query: 418 YLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGDVRRELTFCRKVGLRVIG 594
YLVVD PPGT D ++ + P+ GA++V+TPQ +++ D + RKV + V+G
Sbjct: 179 YLVVDMPPGTGDVQLSVSQNI----PISGAVIVSTPQDIALMDAHKGAEMFRKVHVPVLG 234
Query: 595 LVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGF 774
LV+NMS F CP C TH+F G LAR + LG +PL + + + G+ +
Sbjct: 235 LVQNMSVFQCPKCKHKTHIFGADGARRLARTLDLDVLGDIPLHLNIREASDTGQPIVFSQ 294
Query: 775 PDSPAFPVLSSIAQRILDETP 837
P+S IA ++ P
Sbjct: 295 PESDEAKAYLRIATEVVRRLP 315
>ref|XP_003361597.1| PREDICTED: hypothetical protein LOC100624361 [Sus scrofa].
Length = 431
Score = 165 bits (418), Expect = 3e-41
Identities = 98/216 (45%), Positives = 128/216 (59%), Gaps = 1/216 (0%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L +V LLD+D+CGPSIP+++ ++G V
Sbjct: 50 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQVALLDIDICGPSIPKIMGLEGEQVMA 109
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PVF++ G+ MSVGFLL PD+AV+WRGPKKN L+ FVS Y V
Sbjct: 110 SXXGWSPVFLEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGLLLCFVS--------YCV- 158
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
P S H++AV L GA ++ +PQ VS+ DVR+E++FC KV L +IG+VENM
Sbjct: 159 -RPRAESHPHLSAVQYLAGAHIDGAXLLESPQEVSLQDVRKEISFCHKVKLPIIGVVENM 217
Query: 610 SGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVP 717
F + GG E + + +P LG P
Sbjct: 218 XIFPP----------TTGGAEVMCQDLKIPLLGKAP 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,444,495
Number of extensions: 729615
Number of successful extensions: 3847
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3809
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036086.1| cytosolic Fe-S cluster assembly factor NUBP2 [M... 449 e-126
Alignment gi|NP_036085.1| cytosolic Fe-S cluster assembly factor NUBP1 [M... 280 1e-75
Alignment gi|NP_084036.2| iron-sulfur protein NUBPL [Mus musculus]. 172 3e-43
>ref|NP_036086.1| cytosolic Fe-S cluster assembly factor NUBP2 [Mus musculus].
Length = 275
Score = 449 bits (1154), Expect = e-126
Identities = 221/267 (82%), Positives = 239/267 (89%), Gaps = 4/267 (1%)
Frame = +1
Query: 37 MEAAA----EPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGP 204
MEAAA EPGNLAGVRHIILVLSGKGGVGKSTISTELALALRH GKKVG+LDVDLCGP
Sbjct: 1 MEAAAGERAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGP 60
Query: 205 SIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQ 384
SIP MLR QG+AVHQCD GW+PVFVDQEQ ISLMSVGFLLE PDEAVVWRGPKK+ALIKQ
Sbjct: 61 SIPHMLRAQGKAVHQCDNGWVPVFVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQ 120
Query: 385 FVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTF 564
FVSDVAWG LDYLVVDTPPGTSDEHMA ++ALRPY PLGALVVTTPQAVS+GDVRRELTF
Sbjct: 121 FVSDVAWGQLDYLVVDTPPGTSDEHMATMEALRPYRPLGALVVTTPQAVSIGDVRRELTF 180
Query: 565 CRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSL 744
C+K GL+VIG++ENMSGF CPHCAECT+VFS G GEELAR GVPFLGSVPLD +L RSL
Sbjct: 181 CKKTGLQVIGVIENMSGFTCPHCAECTNVFSSGSGEELARLAGVPFLGSVPLDSQLTRSL 240
Query: 745 EEGRDLARGFPDSPAFPVLSSIAQRIL 825
EEGRD + FP S A+ L+SIAQR++
Sbjct: 241 EEGRDFIQEFPKSTAYSALTSIAQRVV 267
>ref|NP_036085.1| cytosolic Fe-S cluster assembly factor NUBP1 [Mus musculus].
Length = 320
Score = 280 bits (716), Expect = 1e-75
Identities = 138/255 (54%), Positives = 180/255 (70%), Gaps = 3/255 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHTGK-KVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
VRH +LVLSGKGGVGKST S LA L G +V LLD+D+CGPSIP+++ ++G VHQ
Sbjct: 53 VRHKLLVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDICGPSIPKIMGLEGEQVHQ 112
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PV+VD G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG +DYL+V
Sbjct: 113 SGSGWSPVYVDDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDVDYLIV 170
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++ V L GA+++TTPQ V++ DVR+E++FC KV L +IG+VENM
Sbjct: 171 DTPPGTSDEHLSVVQYLAAAHIDGAVILTTPQEVALQDVRKEISFCHKVKLPIIGVVENM 230
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
SGF+CP C + + +F + GG E + + +P LG VPLDP + +S ++G+ PDS
Sbjct: 231 SGFICPKCKKESQIFPPTTGGAEAMCQDLRIPLLGKVPLDPHIGKSCDKGQSFFVEAPDS 290
Query: 784 PAFPVLSSIAQRILD 828
PA SI QRI D
Sbjct: 291 PATAAYRSIIQRIRD 305
>ref|NP_084036.2| iron-sulfur protein NUBPL [Mus musculus].
Length = 319
Score = 172 bits (437), Expect = 3e-43
Identities = 102/257 (39%), Positives = 148/257 (57%), Gaps = 3/257 (1%)
Frame = +1
Query: 64 LAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLDVDLCGPSIPRMLRVQGR 237
+ GVR +I+V SGKGGVGKST + LALAL + K VGLLDVD+ GPSIP+M+ ++G
Sbjct: 63 IEGVREVIVVASGKGGVGKSTTAVNLALALAANDSSKAVGLLDVDVYGPSIPKMMNLRGN 122
Query: 238 AVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLD 417
+ P+ GI+ MS+GFL+E+ +VWRG + I++ + V WG LD
Sbjct: 123 PELSPNNLMRPLL---NYGIACMSMGFLVEET-APLVWRGLMVMSAIEKLLRQVDWGQLD 178
Query: 418 YLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGDVRRELTFCRKVGLRVIG 594
YLVVD PPGT D ++ + P+ GA++V+TPQ +++ D + RKV + V+G
Sbjct: 179 YLVVDMPPGTGDVQLSVSQNI----PISGAVIVSTPQDIALMDAHKGAEMFRKVNVPVLG 234
Query: 595 LVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGF 774
LV+NMS F CP C TH+F G +LA+ + LG VPL + + + G+ +
Sbjct: 235 LVQNMSVFQCPKCKHKTHIFGADGARKLAQTLDLDVLGDVPLHLSIREASDMGQPVVFSQ 294
Query: 775 PDSPAFPVLSSIAQRIL 825
P S IA ++
Sbjct: 295 PGSDEAKAYLHIASEVV 311
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,059,694
Number of extensions: 917159
Number of successful extensions: 4346
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4328
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036357.1| cytosolic Fe-S cluster assembly factor NUBP2 [H... 472 e-133
Alignment gi|NP_002475.2| cytosolic Fe-S cluster assembly factor NUBP1 [H... 273 2e-73
Alignment gi|NP_079428.2| iron-sulfur protein NUBPL isoform 1 precursor [... 177 1e-44
Alignment gi|NP_001188502.1| iron-sulfur protein NUBPL isoform 2 [Homo sa... 145 4e-35
Alignment gi|NP_001188503.1| iron-sulfur protein NUBPL isoform 3 [Homo sa... 80 4e-15
>ref|NP_036357.1| cytosolic Fe-S cluster assembly factor NUBP2 [Homo sapiens].
Length = 271
Score = 472 bits (1214), Expect = e-133
Identities = 232/270 (85%), Positives = 244/270 (90%)
Frame = +1
Query: 37 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHTGKKVGLLDVDLCGPSIPR 216
MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRH GKKVG+LDVDLCGPSIPR
Sbjct: 1 MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPR 60
Query: 217 MLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 396
ML QGRAVHQCDRGW PVF+D+EQ ISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD
Sbjct: 61 MLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSD 120
Query: 397 VAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKV 576
VAWG LDYLVVDTPPGTSDEHMA ++ALRPY PLGALVVTTPQAVSVGDVRRELTFCRK
Sbjct: 121 VAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKT 180
Query: 577 GLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGR 756
GLRV+G+VENMSGF CPHC ECT VFSRGGGEELA+ GVPFLGSVPLDP L R+LEEG
Sbjct: 181 GLRVMGIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGH 240
Query: 757 DLARGFPDSPAFPVLSSIAQRILDETPVGL 846
D + FP SPAF L+SIAQ+ILD TP L
Sbjct: 241 DFIQEFPGSPAFAALTSIAQKILDATPACL 270
>ref|NP_002475.2| cytosolic Fe-S cluster assembly factor NUBP1 [Homo sapiens].
Length = 320
Score = 273 bits (698), Expect = 2e-73
Identities = 136/253 (53%), Positives = 178/253 (70%), Gaps = 3/253 (1%)
Frame = +1
Query: 73 VRHIILVLSGKGGVGKSTISTELALALRHT-GKKVGLLDVDLCGPSIPRMLRVQGRAVHQ 249
V+H ILVLSGKGGVGKST S LA L ++ LLD+D+CGPSIP+++ ++G VHQ
Sbjct: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQ 112
Query: 250 CDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLDYLVV 429
GW PV+V+ G+ MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WG +DYL+V
Sbjct: 113 SGSGWSPVYVEDNLGV--MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIV 170
Query: 430 DTPPGTSDEHMAAVDALRPYGPLGALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENM 609
DTPPGTSDEH++ V L GA+++TTPQ VS+ DVR+E+ FCRKV L +IG+VENM
Sbjct: 171 DTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENM 230
Query: 610 SGFVCPHCAECTHVF--SRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDS 783
SGF+CP C + + +F + GG E + + VP LG VPLDP + ++ ++G+ PDS
Sbjct: 231 SGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDS 290
Query: 784 PAFPVLSSIAQRI 822
PA SI QRI
Sbjct: 291 PATLAYRSIIQRI 303
>ref|NP_079428.2| iron-sulfur protein NUBPL isoform 1 precursor [Homo sapiens].
Length = 319
Score = 177 bits (449), Expect = 1e-44
Identities = 101/261 (38%), Positives = 151/261 (57%), Gaps = 3/261 (1%)
Frame = +1
Query: 64 LAGVRHIILVLSGKGGVGKSTISTELALAL--RHTGKKVGLLDVDLCGPSIPRMLRVQGR 237
+ GV+ +I+V SGKGGVGKST + LALAL + K +GLLDVD+ GPS+P+M+ ++G
Sbjct: 63 IEGVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMNLKGN 122
Query: 238 AVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGPLD 417
P+ GI+ MS+GFL+E+ E VVWRG + I++ + V WG LD
Sbjct: 123 PELSQSNLMRPLL---NYGIACMSMGFLVEE-SEPVVWRGLMVMSAIEKLLRQVDWGQLD 178
Query: 418 YLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGDVRRELTFCRKVGLRVIG 594
YLVVD PPGT D ++ + P+ GA++V+TPQ +++ D + R+V + V+G
Sbjct: 179 YLVVDMPPGTGDVQLSVSQNI----PITGAVIVSTPQDIALMDAHKGAEMFRRVHVPVLG 234
Query: 595 LVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGF 774
LV+NMS F CP C TH+F G +LA+ G+ LG +PL + + + G+ +
Sbjct: 235 LVQNMSVFQCPKCKHKTHIFGADGARKLAQTLGLEVLGDIPLHLNIREASDTGQPIVFSQ 294
Query: 775 PDSPAFPVLSSIAQRILDETP 837
P+S IA ++ P
Sbjct: 295 PESDEAKAYLRIAVEVVRRLP 315
>ref|NP_001188502.1| iron-sulfur protein NUBPL isoform 2 [Homo sapiens].
Length = 223
Score = 145 bits (367), Expect = 4e-35
Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%)
Frame = +1
Query: 166 KKVGLLDVDLCGPSIPRMLRVQGRAVHQCDRGWLPVFVDQEQGISLMSVGFLLEKPDEAV 345
K +GLLDVD+ GPS+P+M+ ++G P+ GI+ MS+GFL+E+ E V
Sbjct: 3 KAIGLLDVDVYGPSVPKMMNLKGNPELSQSNLMRPLL---NYGIACMSMGFLVEE-SEPV 58
Query: 346 VWRGPKKNALIKQFVSDVAWGPLDYLVVDTPPGTSDEHMAAVDALRPYGPL-GALVVTTP 522
VWRG + I++ + V WG LDYLVVD PPGT D ++ + P+ GA++V+TP
Sbjct: 59 VWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNI----PITGAVIVSTP 114
Query: 523 QAVSVGDVRRELTFCRKVGLRVIGLVENMSGFVCPHCAECTHVFSRGGGEELARHTGVPF 702
Q +++ D + R+V + V+GLV+NMS F CP C TH+F G +LA+ G+
Sbjct: 115 QDIALMDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQTLGLEV 174
Query: 703 LGSVPLDPELARSLEEGRDLARGFPDSPAFPVLSSIAQRILDETP 837
LG +PL + + + G+ + P+S IA ++ P
Sbjct: 175 LGDIPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRLP 219
>ref|NP_001188503.1| iron-sulfur protein NUBPL isoform 3 [Homo sapiens].
Length = 136
Score = 79.7 bits (195), Expect = 4e-15
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
Frame = +1
Query: 436 PPGTSDEHMAAVDALRPYGPL-GALVVTTPQAVSVGDVRRELTFCRKVGLRVIGLVENMS 612
PPGT D ++ + P+ GA++V+TPQ +++ D + R+V + V+GLV+NMS
Sbjct: 2 PPGTGDVQLSVSQNI----PITGAVIVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNMS 57
Query: 613 GFVCPHCAECTHVFSRGGGEELARHTGVPFLGSVPLDPELARSLEEGRDLARGFPDSPAF 792
F CP C TH+F G +LA+ G+ LG +PL + + + G+ + P+S
Sbjct: 58 VFQCPKCKHKTHIFGADGARKLAQTLGLEVLGDIPLHLNIREASDTGQPIVFSQPESDEA 117
Query: 793 PVLSSIAQRILDETP 837
IA ++ P
Sbjct: 118 KAYLRIAVEVVRRLP 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,383,835
Number of extensions: 1120060
Number of successful extensions: 5372
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5343
Number of HSP's successfully gapped: 5
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014403
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 460 e-127
>Sscrofa_Chr03
|| Length = 144787322
Score = 460 bits (232), Expect = e-127
Identities = 253/256 (98%), Gaps = 3/256 (1%)
Strand = Plus / Plus
Query: 706 ggctccgtgcccctggatcctgagctcgccaggagcctggaggagggccgcgacttggcg 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41633103 ggctccgtgcccctggatcctgagctcgccaggagcctggaggagggccgcgacttggcg 41633162
Query: 766 cgcggcttcccggacagccctgccttccccgtgctctcctccatcgcgcagaggatcctc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41633163 cgcggcttcccggacagccctgccttccccgtgctctcctccatcgcgcagaggatcctc 41633222
Query: 826 gacgagacccccgttgggctccgctgaccgaggcagccacgctgttgggcccgcct-cca 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 41633223 gacgagacccccgttgggctccgctgaccgaggcagccacgctgttgggcccgcctccca 41633282
Query: 885 ggacacatttctgatggcccagcggtggctcaactctgaagctgc-gacagtacgccgtg 943
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 41633283 ggacacatttctgatggcccagcggtggctcaactctg-agctgcggacagtacgccgtg 41633341
Query: 944 gttctgccctgtcggc 959
||||||||||||||||
Sbjct: 41633342 gttctgccctgtcggc 41633357
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 170 aggtggggctcctcgacgtggacctgtgcggccccagcatcccccgcatgctccgggtgc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41631521 aggtggggctcctcgacgtggacctgtgcggccccagcatcccccgcatgctccgggtgc 41631580
Query: 230 agggcagggccgtgcatcagtgcgacaggggctggttgccggtcttcgtggaccaggagc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41631581 agggcagggccgtgcatcagtgcgacaggggctggttgccggtcttcgtggaccaggagc 41631640
Query: 290 agggcatctccctcatgtcagtgggcttcctgctggagaagccggacgaggccgtggtgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41631641 agggcatctccctcatgtcagtgggcttcctgctggagaagccggacgaggccgtggtgt 41631700
Query: 350 ggagaggccccaagaagaacg 370
|||||||||||||||||||||
Sbjct: 41631701 ggagaggccccaagaagaacg 41631721
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 370 gcgctgataaagcagtttgtgtctgacgtggcctgggggccgctggactatctggttgtg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41632167 gcgctgataaagcagtttgtgtctgacgtggcctgggggccgctggactatctggttgtg 41632226
Query: 430 gacacgccccctgggacctcggatgagcacatggccgccgtggacgccttgcgcccctac 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41632227 gacacgccccctgggacctcggatgagcacatggccgccgtggacgccttgcgcccctac 41632286
Query: 490 ggccccctgggggccctcgtggtcaccacgccccagg 526
|||||||||||||||||||||||||||||||||||||
Sbjct: 41632287 ggccccctgggggccctcgtggtcaccacgccccagg 41632323
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 52 gagcctggaaacctggccggcgtccggcacatcatccttgtcctctcaggaaaggggggt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41631322 gagcctggaaacctggccggcgtccggcacatcatccttgtcctctcaggaaaggggggt 41631381
Query: 112 gtcgggaaaagcaccatctccacggagctggccctggccctgcgccacacgggcaagaag 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41631382 gtcgggaaaagcaccatctccacggagctggccctggccctgcgccacacgggcaagaag 41631441
Query: 172 gtg 174
|||
Sbjct: 41631442 gtg 41631444
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 522 ccaggccgtgtctgtgggggacgtgagacgggagctgaccttctgtaggaaggtggggct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41632452 ccaggccgtgtctgtgggggacgtgagacgggagctgaccttctgtaggaaggtggggct 41632511
Query: 582 gcgggtcatcgggctcgtggagaacatgagcggcttcgtctgcccacactgcgccg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41632512 gcgggtcatcgggctcgtggagaacatgagcggcttcgtctgcccacactgcgccg 41632567
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 637 gagtgcacccacgtcttctcccggggaggcggagaggagctggccagacacaccggagtg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41632661 gagtgcacccacgtcttctcccggggaggcggagaggagctggccagacacaccggagtg 41632720
Query: 697 cccttcctggg 707
|||||||||||
Sbjct: 41632721 cccttcctggg 41632731
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1 ggaagcggaaggaagacgcgcggcaaaccggtcaggatggaggcggcggctg 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41627437 ggaagcggaaggaagacgcgcggcaaaccggtcaggatggaggcggcggctg 41627488
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,564,911
Number of extensions: 118
Number of successful extensions: 118
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 7
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)