Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541419.2| PREDICTED: similar to glycoprotein VI (platelet... 126 4e-29
Alignment gi|XP_854161.1| PREDICTED: similar to leukocyte immunoglobulin-... 114 2e-25
Alignment gi|XP_854148.1| PREDICTED: similar to natural cytotoxicity trig... 112 4e-25
Alignment gi|XP_541425.2| PREDICTED: similar to leukocyte immunoglobulin-... 107 2e-23
Alignment gi|XP_538173.2| PREDICTED: similar to immunoglobulin superfamil... 83 3e-16
Alignment gi|XP_854156.1| PREDICTED: similar to leukocyte immunoglobulin-... 74 2e-13
Alignment gi|XP_541430.2| PREDICTED: similar to immunoglobulin superfamil... 71 1e-12
Alignment gi|XP_854206.1| PREDICTED: similar to Leukocyte immunoglobulin-... 69 5e-12
Alignment gi|XP_541429.2| PREDICTED: similar to osteoclast-associated rec... 64 3e-10
Alignment gi|XP_541424.2| PREDICTED: similar to leukocyte-associated Ig-l... 57 2e-08
>ref|XP_541419.2| PREDICTED: similar to glycoprotein VI (platelet) [Canis
familiaris].
Length = 352
Score = 126 bits (316), Expect = 4e-29
Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G GQ Q Q G L P + ALP SL P K VTI C+GP + YR+ ++ S + Q+R
Sbjct: 27 GLCLGQVVQAQLGTLPKPSLQALPSSLAPLKTQVTIRCQGPPDVDLYRLEKLRSRKYQDR 86
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
+ E S G Y CSY+ G WSP SN L LV T Y KPSLS+ V+ G
Sbjct: 87 PVLFIKTMEES--FAGCYRCSYQNGTLWSPPSNQLELVATGVYAKPSLSAQPSLAVSQGG 144
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQ---AIFLLSQVSSVQAGTYRC 627
+V L+C SK +F+ F L ++E + P + A+ A F ++ V+ +G YRC
Sbjct: 145 DVTLRCQSKYSFDQFAL--------YKEGDTEPHKQSAEQYWANFPITAVTVAHSGIYRC 196
Query: 628 CGVFNQGPFLWSQPSNQVQLQVKEAT--------DPDATESEHPTA 741
++ P+LWS PS+ ++L V + +P ++ +E P A
Sbjct: 197 YSFSSKFPYLWSAPSDPLELVVTGTSVTPGLLSREPPSSVTEFPEA 242
>ref|XP_854161.1| PREDICTED: similar to leukocyte immunoglobulin-like receptor,
subfamily B (with TM and ITIM domains), member 3 [Canis
familiaris].
Length = 662
Score = 114 bits (284), Expect = 2e-25
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Frame = +1
Query: 40 AGRPGPRIMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGP 219
AG IM+ G G Q G L P I A PGS++P + VT+ C+G
Sbjct: 104 AGTETGDIMTPILTALLCLGLSVGSRDSVQAGTLPKPTIWAEPGSVIPMETSVTLWCKGS 163
Query: 220 KQAEAYRITRVGSPEPQEREA-----NTVAFP--ELSPDLVGPYHCSYKIGEDWSPLSNL 378
+A+ Y + + G PE E + + FP +++ G YHC Y+ WS S+
Sbjct: 164 LKAQKYVLYKDGYPETWEEQKPLEPKDKAKFPITDMTSVYAGRYHCYYESPTGWSEPSDQ 223
Query: 379 LYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKN-NGSHTFQEQSSTP 555
L LV+T + KPSLS + +V SG NV LQC S F FIL++ G ++ S
Sbjct: 224 LELVVTGMHSKPSLSVLPSPIVPSGGNVTLQCGSWRGFNRFILMREVEGQPSWTRDSQRA 283
Query: 556 QGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
QA+F + V T+RC G ++ P +WS PS+ ++L V
Sbjct: 284 PSGEFQALFPVGPVIPSLMWTFRCHGFYSNTPQVWSLPSDPLELLV 329
Score = 75.1 bits (183), Expect = 9e-14
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 13/200 (6%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVA------ 294
G S P ++ LP +VP VT+ C + + + R +P + A
Sbjct: 230 GMHSKPSLSVLPSPIVPSGGNVTLQCGSWRGFNRFILMREVEGQPSWTRDSQRAPSGEFQ 289
Query: 295 --FP--ELSPDLVGPYHCS---YKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
FP + P L+ + C + WS S+ L L+++ KPSL + G VV SG
Sbjct: 290 ALFPVGPVIPSLMWTFRCHGFYSNTPQVWSLPSDPLELLVSGVLGKPSLLTQQGPVVTSG 349
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
+N+ LQC S V+++ F L K S Q Q + A F LS V S + G Y C G
Sbjct: 350 QNLTLQCLSDVSYDRFALFKEGTSDLLQLHGRQTQAGFSGADFSLSPVKSSRGGQYTCYG 409
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
N WS PS+ + + V
Sbjct: 410 GHNLSS-QWSAPSDPLDILV 428
Score = 69.7 bits (169), Expect = 4e-12
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 12/200 (6%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE------PQEREANTV 291
+G L P + G +V Q +T+ C + + + + G+ + Q + +
Sbjct: 330 SGVLGKPSLLTQQGPVVTSGQNLTLQCLSDVSYDRFALFKEGTSDLLQLHGRQTQAGFSG 389
Query: 292 AFPELSP---DLVGPYHC--SYKIGEDWSPLSNLLYLVMT-EAYEKPSLSSMTGTVVASG 453
A LSP G Y C + + WS S+ L +++T + PSL G VA G
Sbjct: 390 ADFSLSPVKSSRGGQYTCYGGHNLSSQWSAPSDPLDILVTGQLSYTPSLRVHPGPTVAPG 449
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
ENV L C S N + F+L K+ + S + +A F +S V+ GTYRC G
Sbjct: 450 ENVTLLCQSLSNVDTFLLSKDGAADASLRLRSKYRAGKYEAEFSMSPVTPAHGGTYRCYG 509
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
P+L S PS V++ V
Sbjct: 510 SIKTSPYLLSYPSVPVEILV 529
>ref|XP_854148.1| PREDICTED: similar to natural cytotoxicity triggering receptor 1
[Canis familiaris].
Length = 316
Score = 112 bits (281), Expect = 4e-25
Identities = 83/232 (35%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVG------S 258
G Y Q T Q LS P+I P ++P PV I C+G +A Y++ G S
Sbjct: 12 GLYLSQTTSTQKQILSKPIIWVKPNFMIPKGMPVLIWCQGTPEAIEYQLHLEGHLYAQQS 71
Query: 259 PEPQEREANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMT 432
P+ ER NTV F P+++ G Y C Y+I E WS S+ L LV+T Y+ P+LS
Sbjct: 72 PKQLERR-NTVMFRIPKMTLLTAGQYRCFYRIKELWSKPSDPLDLVVTGMYDTPTLSVHP 130
Query: 433 GTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGR--GAQAIFLLSQVSSV 606
G V SG+NV C F L+K + +SS PQ R Q F + V++
Sbjct: 131 GNKVISGKNVTFSCRLDTATNKFFLLK-------EGRSSHPQHRYGNIQVEFPIGPVTTA 183
Query: 607 QAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEAT-DPDATESEHPTARPPTQT 759
GTYRC G +N WS PS V+L V E D +EH + P T
Sbjct: 184 HRGTYRCFGSYNN--HAWSFPSKPVKLLVTEGVGDTSLVPTEHTSFSEPWDT 233
>ref|XP_541425.2| PREDICTED: similar to leukocyte immunoglobulin-like receptor,
subfamily B (with TM and ITIM domains), member 6 [Canis
familiaris].
Length = 552
Score = 107 bits (266), Expect = 2e-23
Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 7/201 (3%)
Frame = +1
Query: 121 QEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAY-----RITRVGSPEPQEREAN 285
Q Q G L P I A PG + VT+ C+ QA+AY R++R E +
Sbjct: 25 QAQAGTLPKPSIWADPGLMATKGSSVTLWCQTSLQADAYYLFKERVSRYFYMEISQDSKT 84
Query: 286 TVAFP--ELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGEN 459
++ +S G Y C+Y+I + WS S+LL LV+T + P+LS+ G VVASG N
Sbjct: 85 KASYSIESMSAHEAGRYQCAYQIRKSWSQRSDLLTLVVTGVFGAPTLSANPGPVVASGVN 144
Query: 460 VKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
+ L C S+ + +F L+K G+ Q T +A+F + V++ GTYRC
Sbjct: 145 MSLSCSSRYPWYSFHLLKEQGADVPQHLDLTILRERYRALFPVGPVNTSHGGTYRCYISE 204
Query: 640 NQGPFLWSQPSNQVQLQVKEA 702
P+ WS PS+ + LQV A
Sbjct: 205 QSYPYSWSHPSDPLHLQVTGA 225
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 11/198 (5%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPELSP 312
G P + A PGSLV + +T+ CR + + +T+ P + + P+
Sbjct: 224 GAYREPSLMAQPGSLVHSGENLTLQCRSEAGFDRFALTKDEELRPAQHLDGQPS-PDFPL 282
Query: 313 DLV-----GPYHC--SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
D V G Y C + + WS S L +++T Y KPSLS+ G V+ GENV LQ
Sbjct: 283 DPVSRTHGGRYRCYSGHNLSSTWSAPSAPLDILITGIYPKPSLSAQPGPSVSWGENVTLQ 342
Query: 472 CFSKVNFEAFILIKNNG----SHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
C S++ F F L K H + ++ P + F L+ V+S GTYRC
Sbjct: 343 CRSEIWFNTFHLSKEGSLAPPQHLHLQDTAIPY----EVNFTLNPVTSDHQGTYRCYSSH 398
Query: 640 NQGPFLWSQPSNQVQLQV 693
N P+L S PS+ ++L V
Sbjct: 399 NSSPYLLSSPSDSLELLV 416
Score = 68.6 bits (166), Expect = 9e-12
Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 14/201 (6%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRV-GSPEPQE------REANTV 291
G P ++A PG +V +++ C ++ + + G+ PQ RE
Sbjct: 124 GVFGAPTLSANPGPVVASGVNMSLSCSSRYPWYSFHLLKEQGADVPQHLDLTILRERYRA 183
Query: 292 AFP--ELSPDLVGPYHC-----SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVAS 450
FP ++ G Y C SY WS S+ L+L +T AY +PSL + G++V S
Sbjct: 184 LFPVGPVNTSHGGTYRCYISEQSYPYS--WSHPSDPLHLQVTGAYREPSLMAQPGSLVHS 241
Query: 451 GENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCC 630
GEN+ LQC S+ F+ F L K+ Q P F L VS G YRC
Sbjct: 242 GENLTLQCRSEAGFDRFALTKDEELRPAQHLDGQP-----SPDFPLDPVSRTHGGRYRCY 296
Query: 631 GVFNQGPFLWSQPSNQVQLQV 693
N WS PS + + +
Sbjct: 297 SGHNLSS-TWSAPSAPLDILI 316
>ref|XP_538173.2| PREDICTED: similar to immunoglobulin superfamily, member 1 isoform 1
[Canis familiaris].
Length = 1336
Score = 83.2 bits (204), Expect = 3e-16
Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITR---VGSPEPQEREANTVAFP--ELSP 312
P + A P S+VP Q VT+ C+GP Y + + S + +N AFP +S
Sbjct: 971 PWLFAEPSSVVPMGQNVTLWCQGPVHGVGYILHKERETTSVQLWGSTSNDGAFPITNISG 1030
Query: 313 DLVGPYHCSYKIGEDW-SPL----SNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCF 477
+G Y C Y DW SP+ SN L L++T KPSL + G +VA GEN+ QC
Sbjct: 1031 ANIGRYSCCYH--PDWTSPIKIQPSNTLELIVTGLLPKPSLLAQPGPIVAPGENMTFQCQ 1088
Query: 478 SKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFL 657
++ F+L+K ++QS + G +A F + V +G Y C + PF
Sbjct: 1089 GELPDSTFVLLKEGTQQPLEQQSPS----GYRADFWMPAVRGDDSGVYSCVYYLDSAPFA 1144
Query: 658 WSQPSNQVQLQVKE 699
S S+ +++ V +
Sbjct: 1145 ASNHSDFLEIWVTD 1158
Score = 69.7 bits (169), Expect = 4e-12
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANT-----VAF 297
G L P + A PG +V P + +T C+G + + + G+ +P E+++ +
Sbjct: 1062 GLLPKPSLLAQPGPIVAPGENMTFQCQGELPDSTFVLLKEGTQQPLEQQSPSGYRADFWM 1121
Query: 298 PELSPDLVGPYHCSYKIGEDWSPL-----SNLLYLVMTEAYEKPSLSSMTGTVVASGENV 462
P + D G Y C Y + D +P S+ L + +T+ KPSLS+ T+ G+++
Sbjct: 1122 PAVRGDDSGVYSCVYYL--DSAPFAASNHSDFLEIWVTDKPPKPSLSAWPSTMFKLGKDI 1179
Query: 463 KLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFN 642
LQC + F+L H +E PQ F+++ V G Y C
Sbjct: 1180 TLQCRGPLPGVEFVL-----EHDGEE---APQQFSEDGDFVINNVEGKGIGNYSCSYRLQ 1231
Query: 643 QGPFLWSQPSNQVQL 687
P +WS+PS+ ++L
Sbjct: 1232 AYPDIWSEPSDALEL 1246
Score = 59.3 bits (142), Expect = 5e-09
Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSP---------EPQEREANTVAFP 300
P +V P VT C P+Q ++ + + GS P A+ +
Sbjct: 779 PFFKTWASPVVTPGARVTFNCSTPQQHMSFILYKDGSEIASSDRSWASPGASAAHFLIIS 838
Query: 301 ELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFS 480
+ D G Y C Y WS S+ + LV+TE Y KP+L + G VV G+NV L+C
Sbjct: 839 VGTGD-GGNYSCRYYDFAIWSEPSDPVELVVTEFYPKPTLLAHPGPVVLPGKNVTLRCQG 897
Query: 481 KVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRC 627
F L++ Q QS++ G A FLL V + +G Y C
Sbjct: 898 AFQGMRFALLQEGTQVPLQFQSTS----GNSADFLLHTVRAEDSGNYSC 942
Score = 56.2 bits (134), Expect = 5e-08
Identities = 61/210 (29%), Positives = 87/210 (41%), Gaps = 11/210 (5%)
Frame = +1
Query: 139 LSPPLITALPGSLVPPK-QPVTILCRGPKQAEAYRITRVGSPEPQE------REANTVAF 297
L P+I+A P P + Q + I C+G + + + G EP + REA
Sbjct: 683 LPKPVISASP----PIRGQKLQIRCKGWLAGMEFVLYKEGVQEPVQQLHAVGREA-FFTI 737
Query: 298 PELSPDLVGPYHC---SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+ G Y C + K WS S+ + LV+ E Y KP + VV G V
Sbjct: 738 QRMEDKDEGNYSCRTHTEKRPFKWSEPSDPMELVIKEMYPKPFFKTWASPVVTPGARVTF 797
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C + +FIL K+ ++S G A A FL+ V + G Y C
Sbjct: 798 NCSTPQQHMSFILYKDGSEIASSDRSWASPGASA-AHFLIISVGTGDGGNYSC----RYY 852
Query: 649 PF-LWSQPSNQVQLQVKEATDPDATESEHP 735
F +WS+PS+ V+L V E P T HP
Sbjct: 853 DFAIWSEPSDPVELVVTEFY-PKPTLLAHP 881
Score = 55.1 bits (131), Expect = 1e-07
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 6/178 (3%)
Frame = +1
Query: 184 PKQPVTILCRGPK-QAEAYRITRVGSPEPQEREANT---VAFP--ELSPDLVGPYHCSYK 345
P + +T+ CR P + + + + G+ R A+ AFP L+ G YHC
Sbjct: 604 PWKNLTLWCRSPSGSTKEFVLLKDGTGWIATRPASEQVRAAFPLGALTQSHTGSYHCHSW 663
Query: 346 IGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGS 525
S S L LV T+ KP +S+ + G+ ++++C + F+L K
Sbjct: 664 EEMAVSEPSEALELVGTDILPKPVISA---SPPIRGQKLQIRCKGWLAGMEFVLYKEGVQ 720
Query: 526 HTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKE 699
Q+ + G +A F + ++ G Y C + PF WS+PS+ ++L +KE
Sbjct: 721 EPVQQLHAV----GREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPSDPMELVIKE 774
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 7/177 (3%)
Frame = +1
Query: 184 PKQPVTILCRGPKQAEAYRI-----TRVGSPEPQEREANTVAFP--ELSPDLVGPYHCSY 342
P + +T+ C+ P + + + T++ P + V+FP L+ G Y C Y
Sbjct: 50 PWENITLWCKSPSRISSKFLLLKDKTQMTWIRPSSKTFQ-VSFPIGALTKSNAGLYRCCY 108
Query: 343 KIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNG 522
WS S +L L KP T +G NV + C + F+L K
Sbjct: 109 WKETGWSEPSKVLELEAPGQLPKPIFWIQAETYPLTGCNVNILCHGWLQDLVFMLFKEGY 168
Query: 523 SHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ Q T G AIF ++ ++ G Y C P LWS+PSN ++L V
Sbjct: 169 AEPVDYQIPT----GTVAIFSIANMTPESEGVYICRTHIQMLPTLWSEPSNPLKLIV 221
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Frame = +1
Query: 196 VTILCRGPKQAEAYRITRVGSPEPQEREANT-----VAFPELSPDLVGPYHCSYKIG--- 351
V ILC G Q + + + G EP + + T + ++P+ G Y C I
Sbjct: 148 VNILCHGWLQDLVFMLFKEGYAEPVDYQIPTGTVAIFSIANMTPESEGVYICRTHIQMLP 207
Query: 352 EDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIK 513
WS SN L L++ Y KP+L++ G ++A GE++ L+C + + F LI+
Sbjct: 208 TLWSEPSNPLKLIVAGLYPKPTLTAYPGPIMAPGESLNLRCQAPIYGMTFALIR 261
>ref|XP_854156.1| PREDICTED: similar to leukocyte immunoglobulin-like receptor,
subfamily B (with TM and ITIM domains), member 6 [Canis
familiaris].
Length = 195
Score = 74.3 bits (181), Expect = 2e-13
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA-------NTV 291
G L P I PGS++P K P TI C+G +A+ + + G +R+ +
Sbjct: 37 GTLPTPTIWTKPGSVIPLKTPATICCKGSLKAQECHLHKEGHSGTWDRQKALESKDKDKF 96
Query: 292 AFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ ++ G YHC Y+ DWS S+ L LV+T + KPSLS++ VV SG ++ LQ
Sbjct: 97 SITHITGVYAGRYHCYYESTTDWSEPSDPLELVVTGLHGKPSLSALPSPVVPSGGDMTLQ 156
Query: 472 C 474
C
Sbjct: 157 C 157
>ref|XP_541430.2| PREDICTED: similar to immunoglobulin superfamily, member 1 isoform
1 [Canis familiaris].
Length = 252
Score = 71.2 bits (173), Expect = 1e-12
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 12/200 (6%)
Frame = +1
Query: 139 LSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSP-EPQEREANTVAFPE---- 303
L P + A P ++PPK VT+ C + + + + S E + A+T E
Sbjct: 6 LPKPFLNAWPSWIMPPKSNVTLQCHTSTKNVNFVLRKGRSILESLQSLASTEGVAEFHLN 65
Query: 304 -LSPDLVGPYHCSY---KIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
L GPY C Y ++ + S S++L L++T + KPSL + VV +GE V LQ
Sbjct: 66 DLKTRNAGPYTCEYYRRELPQINSQPSDILLLLVTGEFPKPSLQAHQRGVVTAGETVTLQ 125
Query: 472 CFSKVNF---EAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFN 642
C N F L+K + + Q G + F L V+ AG Y C
Sbjct: 126 CQRPDNIFMPIKFALLKAGAAEPIRVQDPA----GKETDFSLRSVTVSDAGNYSCVYFQI 181
Query: 643 QGPFLWSQPSNQVQLQVKEA 702
PFL SQPSN +++Q + A
Sbjct: 182 GAPFLTSQPSNFLEIQPEPA 201
>ref|XP_854206.1| PREDICTED: similar to Leukocyte immunoglobulin-like receptor
subfamily B member 3 precursor (Leukocyte
immunoglobulin-like receptor 3) (LIR-3)
(Immunoglobulin-like transcript 5) (ILT-5) (Monocyte
inhibitory receptor HL9) (CD85a antigen) [Canis
familiaris].
Length = 881
Score = 69.3 bits (168), Expect = 5e-12
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Frame = +1
Query: 319 VGPYH-----C--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASGENVKLQC 474
VGP+H C + + WS S L +++ + PSL G VA GENV L C
Sbjct: 628 VGPFHRGRYTCYGGHNLSSQWSASSGPLDILVAGQFPYTPSLQVQPGPTVAPGENVTLLC 687
Query: 475 FSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPF 654
S + + F+L K ++ S QA F +S V+S GTYRC G FN P+
Sbjct: 688 QSLSSVDIFLLSKEGAANPPLRLRSKYSSGLYQAEFSMSPVTSAHRGTYRCYGSFNTSPY 747
Query: 655 LWSQPSNQVQLQV 693
L S PS V++ V
Sbjct: 748 LLSHPSVPVKILV 760
Score = 67.0 bits (162), Expect = 3e-11
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 11/207 (5%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPELSP 312
G P ++A PGSLV +T+ C + + +T+ P + + P+
Sbjct: 274 GAYREPSLSAQPGSLVHSGDNLTLQCHSEAGFDRFALTKDEELRPAQHLDGQPS-PDFPL 332
Query: 313 DLV-----GPYHC--SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
D V G Y C + + WS S L +++T V+ GENV LQ
Sbjct: 333 DPVSRTHGGRYRCYSGHNLSSTWSAPSAPLDILIT---------------VSWGENVTLQ 377
Query: 472 CFSKVNFEAFILIKNNG----SHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
C S++ F F L K H + ++ P + F L+ V+S GTYRC
Sbjct: 378 CRSEIWFNTFHLSKEGSLAPPQHLHLQDTAIPY----EVNFTLNPVTSDHQGTYRCYSSH 433
Query: 640 NQGPFLWSQPSNQVQLQVKEATDPDAT 720
N P+L S PS+ ++L V + D T
Sbjct: 434 NSSPYLLSSPSDSLELLVSASNSQDYT 460
Score = 65.5 bits (158), Expect = 7e-11
Identities = 45/129 (34%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Frame = +1
Query: 322 GPYHC-----SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKV 486
G Y C SY WS S+ L+L +T AY +PSLS+ G++V SG+N+ LQC S+
Sbjct: 246 GTYRCYISQQSYPYS--WSHPSDPLHLQVTGAYREPSLSAQPGSLVHSGDNLTLQCHSEA 303
Query: 487 NFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQ 666
F+ F L K+ Q P F L VS G YRC N WS
Sbjct: 304 GFDRFALTKDEELRPAQHLDGQP-----SPDFPLDPVSRTHGGRYRCYSGHNLSS-TWSA 357
Query: 667 PSNQVQLQV 693
PS + + +
Sbjct: 358 PSAPLDILI 366
Score = 59.7 bits (143), Expect = 4e-09
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 376 LLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSS-- 549
L L+ + KPSLS + ++V SG NV LQC S F F+L+K F ++S
Sbjct: 514 LTVLLCLGMHSKPSLSVLPSSIVPSGGNVTLQCVSWTGFHRFVLMKEGQRQLFWTRNSQQ 573
Query: 550 TPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKE 699
P R A+F + V T+RC G ++ P WS PS+ ++L + +
Sbjct: 574 APSMR-FWALFPVGPVIPSLMWTFRCYGYYSNTPQEWSLPSDPLELLISD 622
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Frame = +1
Query: 385 LVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIK-NNGSHTFQEQSSTPQG 561
L+++ + KP+LS++ VV SG NV LQC + F F+L+K G ++ + S
Sbjct: 51 LLVSGFHGKPNLSALPSPVVPSGGNVTLQCGLQTGFHRFVLMKEGEGQPSWTQDSQRAPS 110
Query: 562 RGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATDP 711
Q +F + V ++RC G ++ +WS S+ ++L + A+DP
Sbjct: 111 EVFQGLFPVGPVDPSLKWSFRCYGYYSNTLQVWSFSSDPLEL-LDSASDP 159
>ref|XP_541429.2| PREDICTED: similar to osteoclast-associated receptor isoform 1
[Canis familiaris].
Length = 294
Score = 63.5 bits (153), Expect = 3e-10
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQ-----EREANTVAFPELSP 312
P + A P ++V P VT+ C+ P+ A + + + G P E E++P
Sbjct: 21 PWLEAQPAAIVTPGVNVTLRCQAPQLAWRFALFKSGEITPVLYRDVSMELAEFFLEEVTP 80
Query: 313 DLVGPYHCSYK-IGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFS 480
G YHC Y+ +G D WS S+ L L++T+ +PSL ++ G VVA NV L+C
Sbjct: 81 AQGGSYHCCYRSLGWDLGIWSHPSDTLELLVTDQLPRPSLVALPGPVVAPDANVSLRCAG 140
Query: 481 KVNFEAFILIK 513
++ +F L +
Sbjct: 141 RLRGMSFALYR 151
>ref|XP_541424.2| PREDICTED: similar to leukocyte-associated Ig-like receptor 1
isoform b precursor [Canis familiaris].
Length = 235
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 139 LSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSP------EPQEREANTVAFP 300
L P I A P S +P QPVTI+C+GP AE +R+ + GS PQ P
Sbjct: 14 LPSPSIWAQPSSEIPRGQPVTIVCQGPAGAETFRLEKEGSALHKDVRNPQHETQARFPIP 73
Query: 301 ELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMT 396
+ D Y C Y WS S L LV+T
Sbjct: 74 AVGEDTARRYRCLYNKDGTWSDRSKELQLVVT 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,670,038
Number of extensions: 1368793
Number of successful extensions: 5501
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5461
Number of HSP's successfully gapped: 26
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014407
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695461.1| PREDICTED: leukocyte immunoglobulin-like rec... 265 3e-74
Alignment gi|XP_002684701.1| PREDICTED: leukocyte immunoglobulin-like rec... 258 4e-69
Alignment gi|XP_875834.4| PREDICTED: leukocyte immunoglobulin-like recept... 132 6e-31
Alignment gi|XP_002695463.1| PREDICTED: glycoprotein VI (platelet)-like [... 130 2e-30
Alignment gi|XP_002684481.1| PREDICTED: leukocyte immunoglobulin-like rec... 128 9e-30
Alignment gi|XP_002695482.1| PREDICTED: leukocyte immunoglobulin-like rec... 126 3e-29
Alignment gi|XP_001787228.2| PREDICTED: leukocyte immunoglobulin-like rec... 125 7e-29
Alignment gi|XP_002684478.1| PREDICTED: immunoglobulin-like transcript 8-... 124 1e-28
Alignment gi|XP_002684031.1| PREDICTED: immunoglobulin-like transcript 8-... 123 2e-28
Alignment gi|XP_583568.5| PREDICTED: leukocyte immunoglobulin-like recept... 123 2e-28
>ref|XP_002695461.1| PREDICTED: leukocyte immunoglobulin-like receptor, subfamily A
(with TM domain), member 2-like, partial [Bos taurus].
Length = 315
Score = 265 bits (678), Expect(2) = 3e-74
Identities = 144/267 (53%), Positives = 173/267 (64%), Gaps = 10/267 (3%)
Frame = +1
Query: 145 PPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQ-------EREANTVAFPE 303
PP ITALPGS VP K PVT+LC+GPK +E YRI+RVGSPEP R+ N + F E
Sbjct: 2 PPRITALPGSTVPCKSPVTLLCQGPKPSEGYRISRVGSPEPMYEEEQITSRKTNALNFTE 61
Query: 304 LSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSK 483
++ D G YHCSY+ G WS S+ L LVMT AY+KPSLSS+ GTVVA GE VKLQCFSK
Sbjct: 62 VTTDKTGLYHCSYQRGGRWSQFSDPLQLVMTGAYDKPSLSSVVGTVVAPGETVKLQCFSK 121
Query: 484 VNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWS 663
N++ FIL K +G Q QSS P G Q IFLL+ VSS QAGTYRC G F+ P++WS
Sbjct: 122 FNYDVFILTKEDGDPITQNQSSVPHDGGRQTIFLLNPVSSTQAGTYRCYGAFHDNPYVWS 181
Query: 664 QPSNQVQLQVKEATD-PDATESEHPTARPPTQTSKEKRLGLLIGAPVASG--XXXXXXXX 834
QPS+ +QLQV+ TD P +T+ TA + S++ RLG+ IG PVA G
Sbjct: 182 QPSDPLQLQVEGTTDSPSSTQPRCSTAPSGNRASQDIRLGIWIGVPVAVGLLLLVFLIFL 241
Query: 835 XXXXXRKARNNAASKERRPEAAGPXGG 915
RKA+NNA KER PEAAG G
Sbjct: 242 ILYCLRKAKNNAERKERHPEAAGWVNG 268
Score = 32.3 bits (72), Expect(2) = 3e-74
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 914 GQASEAPDPQESHYWQLNCSVP 979
GQASEA DPQ+ Y Q+ C VP
Sbjct: 268 GQASEAADPQDVTYSQVTCHVP 289
>ref|XP_002684701.1| PREDICTED: leukocyte immunoglobulin-like receptor, subfamily A
(with TM domain), member 2-like [Bos taurus].
Length = 302
Score = 258 bits (660), Expect = 4e-69
Identities = 137/246 (55%), Positives = 162/246 (65%), Gaps = 9/246 (3%)
Frame = +1
Query: 28 SRSPAG-RPGPRIMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTI 204
SR+ AG +P IMS G Q+T Q GNL PP I ALPGS VP K PVT+
Sbjct: 55 SRAEAGGQPERGIMSMVPPSLLCLGLCLSQSTWAQKGNLPPPHIIALPGSTVPAKSPVTL 114
Query: 205 LCRGPKQAEAYRITRVGSPEPQERE-------ANTVAFPELSPDLVGPYHCSYKIGEDWS 363
LC+GPKQAE YRI+RVGSPEP ++E N ++ E++ D G YHCSY+ G WS
Sbjct: 115 LCQGPKQAEGYRISRVGSPEPMDKEEEIAPRKTNALSIAEVTTDKTGLYHCSYQRGGRWS 174
Query: 364 PLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQ 543
S+ L LVMT AY KPSLSSM GTVVA GE VKLQCFSK+N + FIL K +G H Q Q
Sbjct: 175 QFSDPLQLVMTGAYSKPSLSSMAGTVVAPGETVKLQCFSKINHDVFILTKEDGDHVTQNQ 234
Query: 544 SSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATD-PDAT 720
S PQG G Q IFLL+ VSS QAGTYRC G F+ P++WSQPS+ +QLQV+ TD P T
Sbjct: 235 SCIPQGGGCQTIFLLNPVSSTQAGTYRCYGAFHNNPYVWSQPSDPLQLQVEGTTDSPSTT 294
Query: 721 ESEHPT 738
+ H T
Sbjct: 295 QHRHST 300
>ref|XP_875834.4| PREDICTED: leukocyte immunoglobulin-like receptor, subfamily B,
member 5-like isoform 2 [Bos taurus].
Length = 331
Score = 132 bits (331), Expect = 6e-31
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Frame = +1
Query: 109 GQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANT 288
G TQ Q G L P I A PGS+V PVTI C+GP A+ + + + G+P +R+
Sbjct: 16 GLRTQVQAGTLPKPTIWAEPGSVVFWGSPVTIWCQGPPGAQEFHLDKEGNPVSWDRQKPL 75
Query: 289 -------VAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVA 447
+ + D G Y C Y+ WS S+ L LV+T Y KPSLS++ VV
Sbjct: 76 EPGDKAKFSIQNMGQDHAGSYQCYYRTRTGWSERSDPLQLVVTRPYGKPSLSALPSPVVM 135
Query: 448 SGENVKLQCFSKVNFEAFILIKNNGSHTF--QEQSSTPQGRGAQAIFLLSQVSSVQAGTY 621
SG NV LQC S+ F +F+L K +F + TP G+ QA+F + V+ T+
Sbjct: 136 SGGNVTLQCGSRRGFNSFLLTKEGEDESFWGLDGERTPDGQ-TQALFPVGPVTPGHRWTF 194
Query: 622 RCCGVFNQGPFLWSQPSNQVQLQVK-EATDPDATESEHPTARPPTQTSKEK 771
RC + P +WS PSN ++L V E TD E P RP S+++
Sbjct: 195 RCYSFYRHSPRVWSSPSNPLELLVSGERTDTFLLSKEGPADRPLRLRSQDQ 245
Score = 49.7 bits (117), Expect = 4e-06
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP-------QEREANTVAFPEL 306
P ++ALP +V VT+ C + ++ +T+ G E + + T A +
Sbjct: 124 PSLSALPSPVVMSGGNVTLQCGSRRGFNSFLLTKEGEDESFWGLDGERTPDGQTQALFPV 183
Query: 307 SPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKV 486
P V P G W+ Y + PS ++ SGE
Sbjct: 184 GP--VTP-------GHRWTFRCYSFYRHSPRVWSSPSNPL---ELLVSGERT-------- 223
Query: 487 NFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQ 666
+ F+L K + S Q QA F LS V+S GTYRC G + P+L SQ
Sbjct: 224 --DTFLLSKEGPADRPLRLRSQDQDGRYQAEFSLSPVTSAHGGTYRCYGSLSTDPYLLSQ 281
Query: 667 PSNQVQLQVKEATDPDAT 720
PS + L V + T + T
Sbjct: 282 PSEPLALVVADYTVQNLT 299
>ref|XP_002695463.1| PREDICTED: glycoprotein VI (platelet)-like [Bos taurus].
Length = 261
Score = 130 bits (327), Expect = 2e-30
Identities = 84/221 (38%), Positives = 116/221 (52%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G+ + G LS P + ALP SLVP +PVTI C+GP AE YR+ ++ S ++
Sbjct: 12 GLCLGRVIRVPEGPLSEPSLQALPSSLVPLGRPVTIRCQGPPDAELYRLEKLKSGRYFDQ 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
+ + D G Y CSY+IG WSP S+ L LV T KPSLS+ T V +G
Sbjct: 72 AE--IFISAMERDQAGRYRCSYQIGMRWSPPSSQLELVATGTSPKPSLSAQPSTAVPAGV 129
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGV 636
V L+C S+ F+ F L K + F+ TP+ R +A F + V++ +G YRC
Sbjct: 130 TVTLRCQSQYGFDQFALYKEGDTRPFK----TPE-RWYRADFPIVTVTAAHSGIYRCYSF 184
Query: 637 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQT 759
+ P+LWS PS+ ++L V T T S PT P T T
Sbjct: 185 SSAYPYLWSAPSDPLKLVV---TGTSVTPSWPPTEPPSTVT 222
>ref|XP_002684481.1| PREDICTED: leukocyte immunoglobulin-like receptor B2-like [Bos
taurus].
Length = 643
Score = 128 bits (321), Expect = 9e-30
Identities = 82/233 (35%), Positives = 112/233 (48%), Gaps = 9/233 (3%)
Frame = +1
Query: 22 SASRSPAGRPGPRIMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVT 201
S S G G M+ G G TQ Q G L P I A P S+VP PVT
Sbjct: 75 SPPSSQTGLQGRDAMAPVLPALLCLGLSVGLRTQVQAGTLPKPTIWAEPRSVVPWGSPVT 134
Query: 202 ILCRGPKQAEAYRITRVGSPEPQEREANT-------VAFPELSPDLVGPYHCSYKIGEDW 360
I C+GP A+ + + + G+P +RE + + D G Y C Y+ W
Sbjct: 135 IWCQGPPGAQEFHLDKEGNPVFWDREKPPGPGDKARFSIQHMIEDHAGSYQCYYRTRTGW 194
Query: 361 SPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTF-- 534
S S+ L LV+T Y KPSLS++ VV SG NV LQC S+ F +F+L K +F
Sbjct: 195 SERSDPLQLVVTRPYGKPSLSALPSPVVMSGGNVTLQCGSRRGFNSFLLTKEGEDESFWG 254
Query: 535 QEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ TP G+ QA+F + V+ T+RC + P +WS PSN ++L V
Sbjct: 255 LDGERTPDGQ-TQALFPVGPVTPGHRWTFRCYSFYRHSPRVWSSPSNPLELLV 306
Score = 81.3 bits (199), Expect = 1e-15
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Frame = +1
Query: 145 PPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE----PQEREANTVAFPELSP 312
P L+T G ++ +Q +T+ CR + +++VG + P +R ++ +
Sbjct: 313 PSLLTP-QGPVITSEQNLTLQCRSDVGYTRFALSKVGGQDLPQRPAQRPQGGLSQADFPL 371
Query: 313 DLVGPYHCS-------YKIGEDWS-PLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
VG H + + WS P L LV ++PSLS G VA GE V L
Sbjct: 372 GPVGTIHRGQYRRYGGHGLSSKWSAPSETLELLVAGWLRDRPSLSVRPGPTVAPGETVTL 431
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S+ + F+L K +H S Q QA F LS V+S GTYRC G +
Sbjct: 432 LCQSRERTDTFLLSKEGAAHRPLRLRSQDQDGRYQAEFSLSPVTSAHGGTYRCYGSLSTD 491
Query: 649 PFLWSQPSNQVQLQV 693
P+L SQPS + L V
Sbjct: 492 PYLLSQPSEPLTLVV 506
Score = 69.3 bits (168), Expect = 5e-12
Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 16/198 (8%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP-------QEREANTVAFPEL 306
P ++ALP +V VT+ C + ++ +T+ G E + + T A +
Sbjct: 212 PSLSALPSPVVMSGGNVTLQCGSRRGFNSFLLTKEGEDESFWGLDGERTPDGQTQALFPV 271
Query: 307 SPDLVGP---------YHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGEN 459
P G Y S ++ WS SN L L++ KPSL + G V+ S +N
Sbjct: 272 GPVTPGHRWTFRCYSFYRHSPRV---WSSPSNPLELLVPGLSGKPSLLTPQGPVITSEQN 328
Query: 460 VKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
+ LQC S V + F L K G Q + PQG +QA F L V ++ G YR G
Sbjct: 329 LTLQCRSDVGYTRFALSKVGGQDLPQRPAQRPQGGLSQADFPLGPVGTIHRGQYRRYGGH 388
Query: 640 NQGPFLWSQPSNQVQLQV 693
WS PS ++L V
Sbjct: 389 GLSS-KWSAPSETLELLV 405
>ref|XP_002695482.1| PREDICTED: leukocyte immunoglobulin-like receptor B2-like [Bos
taurus].
Length = 599
Score = 126 bits (316), Expect = 3e-29
Identities = 81/228 (35%), Positives = 115/228 (50%), Gaps = 11/228 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G TQ Q G L P I A P S+VP PVTI C+GP A+ + + + G+P +R
Sbjct: 12 GLSVGLRTQVQAGTLPKPTIWAEPRSVVPWGSPVTIWCQGPPGAQEFHLDKEGNPVFWDR 71
Query: 277 EANT-------VAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
E + + D G Y C Y+ WS S+ L LV+T Y KPSLS++
Sbjct: 72 EKPPGPGDKARFSIQHMIEDHAGSYRCYYRTRTGWSERSDPLELVVTGPYIKPSLSALPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ--EQSSTPQGRGAQAIFLLSQVSSVQ 609
VV SG NV LQC S+ F F+L K + + + +P G+ QA+F + V+
Sbjct: 132 PVVMSGGNVTLQCGSRQGFNRFLLTKEGEDESSRALDGQRSPDGQ-TQALFPVGPVTPGH 190
Query: 610 AGTYRCCGVFNQGPFLWSQPSNQVQLQV--KEATDPDATESEHPTARP 747
T+RC G + Q P +WS PS+ ++L V +E+ P + PT P
Sbjct: 191 RWTFRCYGFYRQSPRVWSAPSDPLELLVSGEESHRPSLSVRPGPTVAP 238
Score = 88.6 bits (218), Expect = 8e-18
Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE----PQEREANTVAFPELSPD 315
P ++ PG V P + VT+ CR + +++VG + P +R ++ +
Sbjct: 226 PSLSVRPGPTVAPGETVTLQCRSDVGYTRFALSKVGGQDLPQRPAQRPQGGLSQADFPLG 285
Query: 316 LVGPYHCS-------YKIGEDWSPLSNLLYLVMT--EAYEKPSLSSMTGTVVASGENVKL 468
VG H + + WS S L L++ E ++PSLS G VA GE V L
Sbjct: 286 PVGTIHRGQYRRYGGHGLSSKWSAPSETLELLVAGEEPADRPSLSVRPGPTVAPGETVTL 345
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S+ + F+L K +H S Q QA F LS V+S GTYRC G +
Sbjct: 346 LCQSRERTDTFLLSKEGAAHRPLRLRSQDQDGRYQAEFSLSPVTSAHGGTYRCYGSLSTD 405
Query: 649 PFLWSQPSNQVQLQV 693
P+L SQPS + L V
Sbjct: 406 PYLLSQPSEPLTLVV 420
Score = 71.2 bits (173), Expect = 1e-12
Identities = 70/225 (31%), Positives = 93/225 (41%), Gaps = 25/225 (11%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPELSPD---- 315
P ++ALP +V VT+ C + + +T+ G E E++ + SPD
Sbjct: 124 PSLSALPSPVVMSGGNVTLQCGSRQGFNRFLLTKEG-----EDESSRALDGQRSPDGQTQ 178
Query: 316 ---LVGP--------------YHCSYKIGEDWS-PLSNLLYLVMTEAYEKPSLSSMTGTV 441
VGP Y S ++ WS P L LV E +PSLS G
Sbjct: 179 ALFPVGPVTPGHRWTFRCYGFYRQSPRV---WSAPSDPLELLVSGEESHRPSLSVRPGPT 235
Query: 442 VASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTY 621
VA GE V LQC S V + F L K G Q + PQG +QA F L V ++ G Y
Sbjct: 236 VAPGETVTLQCRSDVGYTRFALSKVGGQDLPQRPAQRPQGGLSQADFPLGPVGTIHRGQY 295
Query: 622 RCCGVFNQGPFLWSQPSNQVQLQV---KEATDPDATESEHPTARP 747
R G WS PS ++L V + A P + PT P
Sbjct: 296 RRYGGHGLSS-KWSAPSETLELLVAGEEPADRPSLSVRPGPTVAP 339
>ref|XP_001787228.2| PREDICTED: leukocyte immunoglobulin-like receptor, subfamily B,
member 5-like [Bos taurus].
Length = 550
Score = 125 bits (313), Expect = 7e-29
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 14/235 (5%)
Frame = +1
Query: 37 PAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTIL 207
P+ +PGP+ M+ G G TQ Q G L P I A PGS+V PVTI
Sbjct: 65 PSSQPGPQGRDAMAPALPALLCLGLSVGLRTQVQAGTLPKPTIWAEPGSVVSWGSPVTIW 124
Query: 208 CRGPKQAEAYRITRVGSP---------EPQEREANTVAFPELSPDLVGPYHCSYKIGEDW 360
C+GP A+ + + + G+P EP ++ ++ + + D G Y C Y W
Sbjct: 125 CQGPPGAQEFHLDKEGNPVSWDRQKPLEPGDKARFSIHY--MGQDHAGSYQCYYGTRTGW 182
Query: 361 SPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ- 537
S S+ L LV+T Y KPSLS++ VV SG NV LQC S+ F F+L K + +
Sbjct: 183 SERSDPLELVVTGPYGKPSLSALPSLVVTSGRNVTLQCGSRWGFNRFLLTKEGEDESSRA 242
Query: 538 -EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKE 699
+ TP G+ QA+F + V+ T+RC G++ +WS PS+ ++L + +
Sbjct: 243 LDGQRTPDGQ-TQALFPVGPVTPGHRWTFRCYGIYRDTHRVWSAPSDPLELLISD 296
>ref|XP_002684478.1| PREDICTED: immunoglobulin-like transcript 8-like [Bos taurus].
Length = 581
Score = 124 bits (312), Expect = 1e-28
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 13/237 (5%)
Frame = +1
Query: 22 SASRSPAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQ 192
+++ SP+ +PGP+ M+ G G TQ Q L P I A PGS+VP
Sbjct: 98 TSAESPSSQPGPQGGDAMAPALPTLLCLGLSVGLRTQVQAETLPKPTIWAEPGSVVPRGS 157
Query: 193 PVTILCRGPKQAEAYRITRVGSPEPQEREANT-------VAFPELSPDLVGPYHCSYKIG 351
VTI C+G +A+ + + + G+P+ +R+ + + D G Y C Y
Sbjct: 158 SVTIWCQGSPRAQEFHLDKEGNPDLWDRQKPPGPGDKARFSIHYMRDDHAGSYRCYYGTR 217
Query: 352 EDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIK---NNG 522
WS S+ L LV+T Y KPSLS++ VV SG NV LQC S F F+L K +
Sbjct: 218 TGWSERSDPLQLVVTGPYGKPSLSALPSPVVMSGGNVTLQCASSQGFNRFLLTKEGEDES 277
Query: 523 SHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
S T Q TP G+ QA+F + V+ T+RC G + P +WS PS+ ++L V
Sbjct: 278 SRTLDGQ-QTPDGQ-TQALFPVGPVTPGHRWTFRCYGFYRHTPRVWSAPSDPLELLV 332
Score = 78.2 bits (191), Expect = 1e-14
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP-------QEREANTV 291
G P ++ALP +V VT+ C + + +T+ G E Q + T
Sbjct: 233 GPYGKPSLSALPSPVVMSGGNVTLQCASSQGFNRFLLTKEGEDESSRTLDGQQTPDGQTQ 292
Query: 292 AFPELSPDLVGP------YHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
A + P G Y WS S+ L L+++ KPSL + G V+ SG
Sbjct: 293 ALFPVGPVTPGHRWTFRCYGFYRHTPRVWSAPSDPLELLVSGLSWKPSLLTPQGPVITSG 352
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
+N+ LQC S V + F L K G Q PQG +QA F L +V ++ G YRC G
Sbjct: 353 QNLTLQCHSDVGYTRFALSKEGGQDLPQHPGWRPQGGLSQADFPLGRVGTIHGGQYRCYG 412
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
WS PS ++L V
Sbjct: 413 GHGLSS-EWSAPSEPLELLV 431
Score = 75.1 bits (183), Expect = 9e-14
Identities = 50/127 (39%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Frame = +1
Query: 322 GPYHC--SYKIGEDWS-PLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNF 492
G Y C + + +WS P L LV + PSLS G VA GENV L C S
Sbjct: 406 GQYRCYGGHGLSSEWSAPSEPLELLVAGWLRDSPSLSVQLGPSVAPGENVTLLCQSGERT 465
Query: 493 EAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPS 672
+ F+L K +H S Q QA F LS V+S GTYRC G + P+L SQPS
Sbjct: 466 DTFLLSKEGAAHRPLRLRSQSQDGRYQAEFSLSPVTSAHGGTYRCYGSLSTDPYLLSQPS 525
Query: 673 NQVQLQV 693
+ L V
Sbjct: 526 EPLALVV 532
>ref|XP_002684031.1| PREDICTED: immunoglobulin-like transcript 8-like, partial [Bos
taurus].
Length = 480
Score = 123 bits (309), Expect = 2e-28
Identities = 82/233 (35%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Frame = +1
Query: 34 SPAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTI 204
SP+ +PGP+ M+ G G TQ Q L P I A PGS+VP VTI
Sbjct: 1 SPSSQPGPQGGDAMAPALPTLLCLGLSVGLRTQVQAETLPKPTIWAEPGSVVPRGSSVTI 60
Query: 205 LCRGPKQAEAYRITRVGSPEPQEREANT-------VAFPELSPDLVGPYHCSYKIGEDWS 363
C+G +A+ + + + G+P+ +R+ + + D G Y C Y WS
Sbjct: 61 WCQGSPRAQEFHLDKEGNPDLWDRQKPPGPGDKARFSIHYMRDDHAGSYRCYYGTRTGWS 120
Query: 364 PLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIK---NNGSHTF 534
S+ L LV+T Y KPSLS++ VV SG NV LQC S F F+L K + S T
Sbjct: 121 ERSDPLQLVVTGPYGKPSLSALPSPVVMSGGNVTLQCASSQGFNRFLLTKEGEDESSRTL 180
Query: 535 QEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
Q TP G+ QA+F + V+ T+RC G + P +WS PS+ ++L V
Sbjct: 181 DGQ-QTPDGQ-TQALFPVGPVTPGHRWTFRCYGFYRHTPRVWSAPSDPLELLV 231
Score = 78.2 bits (191), Expect = 1e-14
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 13/200 (6%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP-------QEREANTV 291
G P ++ALP +V VT+ C + + +T+ G E Q + T
Sbjct: 132 GPYGKPSLSALPSPVVMSGGNVTLQCASSQGFNRFLLTKEGEDESSRTLDGQQTPDGQTQ 191
Query: 292 AFPELSPDLVGP------YHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
A + P G Y WS S+ L L+++ KPSL + G V+ SG
Sbjct: 192 ALFPVGPVTPGHRWTFRCYGFYRHTPRVWSAPSDPLELLVSGLSWKPSLLTPQGPVITSG 251
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
+N+ LQC S V + F L K G Q PQG +QA F L +V ++ G YRC G
Sbjct: 252 QNLTLQCHSDVGYTRFALSKEGGQDLPQHPGWRPQGGLSQADFPLGRVGTIHGGQYRCYG 311
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
WS PS ++L V
Sbjct: 312 GHGLSS-EWSAPSEPLELLV 330
Score = 75.1 bits (183), Expect = 9e-14
Identities = 50/127 (39%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Frame = +1
Query: 322 GPYHC--SYKIGEDWS-PLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNF 492
G Y C + + +WS P L LV + PSLS G VA GENV L C S
Sbjct: 305 GQYRCYGGHGLSSEWSAPSEPLELLVAGWLRDSPSLSVQLGPSVAPGENVTLLCQSGERT 364
Query: 493 EAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPS 672
+ F+L K +H S Q QA F LS V+S GTYRC G + P+L SQPS
Sbjct: 365 DTFLLSKEGAAHRPLRLRSQSQDGRYQAEFSLSPVTSAHGGTYRCYGSLSTDPYLLSQPS 424
Query: 673 NQVQLQV 693
+ L V
Sbjct: 425 EPLALVV 431
>ref|XP_583568.5| PREDICTED: leukocyte immunoglobulin-like receptor, subfamily B,
member 5-like [Bos taurus].
Length = 1212
Score = 123 bits (309), Expect = 2e-28
Identities = 79/234 (33%), Positives = 114/234 (48%), Gaps = 15/234 (6%)
Frame = +1
Query: 37 PAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTIL 207
P+ +PGP+ M+ G G TQ Q G L P I PGS+VP PVTI
Sbjct: 18 PSSQPGPQGGDAMASTLLALLCLGLSVGLRTQVQAGTLPKPTIWVEPGSVVPSGTPVTIW 77
Query: 208 CRGPKQAEAYRITRVGSPEPQEREANT-------VAFPELSPDLVGPYHCSYKIGEDWSP 366
C+G +A+ + + + G+ P +R+ +A P+++ G Y C Y WS
Sbjct: 78 CQGSPRAQVFHLDKEGTSVPWDRQKPPGPRDKAQLAIPQMTEQHAGSYQCYYSTPTGWSE 137
Query: 367 LSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQS 546
S+ L LV+T +Y KPSLS++ VV G +V LQC S F F+L K E S
Sbjct: 138 GSDRLELVVTGSYSKPSLSALPSPVVTLGGSVTLQCGSHQGFNRFLLTKEGE----DESS 193
Query: 547 STPQGRGA-----QAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
T G+ A QA+F + V+ +RC G + P +WS PS+ ++L V
Sbjct: 194 RTLDGQRAPNWQTQALFSVGPVTPGHRWMFRCYGFYRDTPQVWSAPSDPLELLV 247
Score = 87.0 bits (214), Expect = 2e-17
Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE------PQEREANTVAFPELS 309
P ++ PG V P + VT+LC+ ++ + + + + G+ Q++ A LS
Sbjct: 355 PSLSVRPGPTVAPGENVTLLCQSGERTDTFLLFKEGTAHRPLRLHSQDQAGRYQAEFSLS 414
Query: 310 PDLV---GPYHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
P G Y C + D S S L LV++ Y KPSLS+++ VV SG NV LQ
Sbjct: 415 PVTSAHGGTYRCYGSLSTDPYLLSQPSEPLVLVVSGPYIKPSLSALSSPVVMSGGNVTLQ 474
Query: 472 CFSKVNFEAFILIKNNGSHTFQ---EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFN 642
C S+ F F+L K G F + +P G+ QA+F + V+ T+RC G +
Sbjct: 475 CGSRQGFNRFLLTK-EGEDEFSRALDGQRSPDGQ-TQALFPVGPVTPGHRWTFRCYGFYR 532
Query: 643 QGPFLWSQPSNQVQLQV 693
P +WS PS+ ++L V
Sbjct: 533 HNPQVWSAPSDPLELLV 549
Score = 84.7 bits (208), Expect = 1e-16
Identities = 71/221 (32%), Positives = 98/221 (44%), Gaps = 16/221 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQ-----EREANTVAF 297
G+ S P ++ALP +V VT+ C + + +T+ G E +R N
Sbjct: 148 GSYSKPSLSALPSPVVTLGGSVTLQCGSHQGFNRFLLTKEGEDESSRTLDGQRAPNWQTQ 207
Query: 298 PELSPDLVGPYHC----SYKIGED----WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
S V P H Y D WS S+ L L+++ KPSL + G V+ SG
Sbjct: 208 ALFSVGPVTPGHRWMFRCYGFYRDTPQVWSAPSDPLELLVSGLSGKPSLLTSQGPVITSG 267
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
+N+ LQC S V++ F L K G Q + PQ +QA F L VS+VQ G YRC G
Sbjct: 268 QNLTLQCRSDVSYARFALFKEGGQDLPQRPARRPQEGLSQADFPLGPVSTVQGGRYRCYG 327
Query: 634 VFNQGPFLWSQPSNQVQLQV---KEATDPDATESEHPTARP 747
WS PS ++L V + A P + PT P
Sbjct: 328 GHGLSS-EWSVPSETLELLVAGEEPADRPSLSVRPGPTVAP 367
Score = 84.0 bits (206), Expect = 2e-16
Identities = 64/196 (32%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Frame = +1
Query: 145 PPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA-------NTVAFP- 300
P L+T+ G ++ Q +T+ CR + + + G + +R A + FP
Sbjct: 254 PSLLTS-QGPVITSGQNLTLQCRSDVSYARFALFKEGGQDLPQRPARRPQEGLSQADFPL 312
Query: 301 -ELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMT--EAYEKPSLSSMTGTVVASGENVK 465
+S G Y C + + +WS S L L++ E ++PSLS G VA GENV
Sbjct: 313 GPVSTVQGGRYRCYGGHGLSSEWSVPSETLELLVAGEEPADRPSLSVRPGPTVAPGENVT 372
Query: 466 LQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
L C S + F+L K +H S Q QA F LS V+S GTYRC G +
Sbjct: 373 LLCQSGERTDTFLLFKEGTAHRPLRLHSQDQAGRYQAEFSLSPVTSAHGGTYRCYGSLST 432
Query: 646 GPFLWSQPSNQVQLQV 693
P+L SQPS + L V
Sbjct: 433 DPYLLSQPSEPLVLVV 448
Score = 74.7 bits (182), Expect = 1e-13
Identities = 78/283 (27%), Positives = 112/283 (39%), Gaps = 26/283 (9%)
Frame = +1
Query: 142 SPPLITALPG-----SLVPPKQPV-------TILCRGPKQAEAYRITRVGSPEPQEREAN 285
S PL +PG SL+ P+ PV T+ CR + +++ G + +R A
Sbjct: 542 SDPLELLVPGLSGKPSLLSPQGPVVTSGQNLTLQCRSDIGYTRFALSKEGGQDLPQRPAQ 601
Query: 286 T-------VAFPELSPDLV--GPYHC--SYKIGEDWSPLSNLLYLVMT---EAYEKPSLS 423
FP D G Y C + + +WS S L L++ A + PSLS
Sbjct: 602 RPQRGLYQADFPLGPVDTFHRGQYRCYGGHGLSSEWSAPSEPLELLVAGEEPAGQLPSLS 661
Query: 424 SMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSS 603
VA GENV L C S + F+L K + S Q QA F LS V+S
Sbjct: 662 VRPHPSVAPGENVTLLCQSGERTDTFLLSKEGPADRPLRLRSQDQDGRYQAEFSLSPVTS 721
Query: 604 VQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGL 783
GTYRC G + P+L SQPS + L V A + +A+P + + L
Sbjct: 722 AHGGTYRCYGSLSTDPYLLSQPSEPLALVVS-----GAYRAPSLSAQPSPVVAAGGSVSL 776
Query: 784 LIGAPVASGXXXXXXXXXXXXXRKARNNAASKERRPEAAGPXG 912
+ + A G R + + + R +A P G
Sbjct: 777 MCSSQYAVGTLHLLKEGGPDPLRHKTSRSYGNQGREQAVFPVG 819
Score = 72.0 bits (175), Expect = 7e-13
Identities = 65/213 (30%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVA--FP--ELSPD 315
P ++A P SLV +T+ CR ++ +T+ P R + FP +S
Sbjct: 860 PSLSAQPSSLVLAGDNLTLQCRSEAGFGSFTLTKDEGLSPPLRLEGQQSPDFPLGRVSRA 919
Query: 316 LVGPYHC-----SYKIGEDWSPLSNLLY----------------------LVMTEAYEKP 414
G Y C SY +PL L+ LV+T + KP
Sbjct: 920 HGGRYRCYSGHNSYVWSAPSAPLDILIAGEAPLSWSRSRLSAQGAGRGSALVVTGMHRKP 979
Query: 415 SLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQ 594
SLS+ G V GENV LQC S+V + F L K Q QA F L
Sbjct: 980 SLSARPGASVPQGENVTLQCRSEVRSDTFHLSKEGSLAAPQHLRLQDPAPPVQANFTLRA 1039
Query: 595 VSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
V+S +GTYRC + P L S PS+ ++LQV
Sbjct: 1040 VTSAHSGTYRCYSSHSTAPHLLSLPSDPLELQV 1072
Score = 69.7 bits (169), Expect = 4e-12
Identities = 64/223 (28%), Positives = 91/223 (40%), Gaps = 17/223 (7%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE-------PQEREANT 288
+G P ++AL +V VT+ C + + +T+ G E + + T
Sbjct: 449 SGPYIKPSLSALSSPVVMSGGNVTLQCGSRQGFNRFLLTKEGEDEFSRALDGQRSPDGQT 508
Query: 289 VAFPELSPDLVG---PYHCS--YKIGED-WSPLSNLLYLVMTEAYEKPSLSSMTGTVVAS 450
A + P G + C Y+ WS S+ L L++ KPSL S G VV S
Sbjct: 509 QALFPVGPVTPGHRWTFRCYGFYRHNPQVWSAPSDPLELLVPGLSGKPSLLSPQGPVVTS 568
Query: 451 GENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCC 630
G+N+ LQC S + + F L K G Q + PQ QA F L V + G YRC
Sbjct: 569 GQNLTLQCRSDIGYTRFALSKEGGQDLPQRPAQRPQRGLYQADFPLGPVDTFHRGQYRCY 628
Query: 631 GVFNQGPFLWSQPSNQVQLQVKEATD----PDATESEHPTARP 747
G WS PS ++L V P + HP+ P
Sbjct: 629 GGHGLSS-EWSAPSEPLELLVAGEEPAGQLPSLSVRPHPSVAP 670
Score = 65.5 bits (158), Expect = 7e-11
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 15/203 (7%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP-----------QER 276
+G P ++A P +V V+++C + + G P+P Q R
Sbjct: 752 SGAYRAPSLSAQPSPVVAAGGSVSLMCSSQYAVGTLHLLKEGGPDPLRHKTSRSYGNQGR 811
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVA 447
E ++ G Y C WS S+ L+L +T PSLS+ ++V
Sbjct: 812 EQAVFPVGPVTTSHGGTYRCYDAPSTQPYLWSRPSDPLHLQVTGLSRAPSLSAQPSSLVL 871
Query: 448 SGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQA-IFLLSQVSSVQAGTYR 624
+G+N+ LQC S+ F +F L K+ G S + G Q+ F L +VS G YR
Sbjct: 872 AGDNLTLQCRSEAGFGSFTLTKDEG------LSPPLRLEGQQSPDFPLGRVSRAHGGRYR 925
Query: 625 CCGVFNQGPFLWSQPSNQVQLQV 693
C N ++WS PS + + +
Sbjct: 926 CYSGHNS--YVWSAPSAPLDILI 946
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,882,424
Number of extensions: 1329592
Number of successful extensions: 5449
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 5276
Number of HSP's successfully gapped: 135
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230801.1| leukocyte immunoglobulin-like receptor subfa... 517 e-147
Alignment gi|NP_001230802.1| leukocyte immunoglobulin-like receptor subfa... 516 e-147
Alignment gi|XP_003127512.1| PREDICTED: leukocyte immunoglobulin-like rec... 489 e-139
Alignment gi|XP_003127485.2| PREDICTED: leukocyte immunoglobulin-like rec... 214 6e-56
Alignment gi|XP_003127513.2| PREDICTED: platelet glycoprotein VI-like [Su... 133 1e-31
Alignment gi|XP_003356107.1| PREDICTED: platelet glycoprotein VI, partial... 132 3e-31
Alignment gi|XP_003356109.1| PREDICTED: leukocyte immunoglobulin-like rec... 127 9e-30
Alignment gi|XP_003356106.1| PREDICTED: leukocyte immunoglobulin-like rec... 127 9e-30
Alignment gi|XP_003356099.1| PREDICTED: leukocyte immunoglobulin-like rec... 122 3e-28
Alignment gi|XP_003134223.1| PREDICTED: leukocyte immunoglobulin-like rec... 115 3e-26
>ref|NP_001230801.1| leukocyte immunoglobulin-like receptor subfamily B member 3-like
isoform 1 [Sus scrofa].
Length = 337
Score = 517 bits (1332), Expect = e-147
Identities = 257/273 (94%), Positives = 257/273 (94%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER
Sbjct: 12 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE
Sbjct: 72 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 131
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGV 636
NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSS QAGTYRCCGV
Sbjct: 132 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSAQAGTYRCCGV 191
Query: 637 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGXX 816
FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASG
Sbjct: 192 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGLL 251
Query: 817 XXXXXXXXXXXRKARNNAASKERRPEAAGPXGG 915
RKARNNAASKERRPEAAGP G
Sbjct: 252 LLVLLLLVCCCRKARNNAASKERRPEAAGPTEG 284
>ref|NP_001230802.1| leukocyte immunoglobulin-like receptor subfamily B member 3-like
isoform 2 [Sus scrofa].
Length = 331
Score = 516 bits (1328), Expect = e-147
Identities = 260/293 (88%), Positives = 263/293 (89%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER
Sbjct: 12 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE
Sbjct: 72 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 131
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGV 636
NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQ RGAQAIFLLS VSSVQAGTYRCCGV
Sbjct: 132 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQDRGAQAIFLLSHVSSVQAGTYRCCGV 191
Query: 637 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGXX 816
FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASG
Sbjct: 192 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGLL 251
Query: 817 XXXXXXXXXXXRKARNNAASKERRPEAAGPXGGTGL*STRPAGKSLLAAELQC 975
RKARNNAASKERRPEAAGP G S P + + +L C
Sbjct: 252 LLVLLLLVCCCRKARNNAASKERRPEAAGPTEGQA--SEAPDPQEVTYCQLTC 302
>ref|XP_003127512.1| PREDICTED: leukocyte immunoglobulin-like receptor subfamily A
member 5-like [Sus scrofa].
Length = 347
Score = 489 bits (1260), Expect = e-139
Identities = 246/276 (89%), Positives = 249/276 (90%), Gaps = 4/276 (1%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER
Sbjct: 12 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE
Sbjct: 72 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 131
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGV 636
NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSS QAGTYRCCGV
Sbjct: 132 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSAQAGTYRCCGV 191
Query: 637 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGXX 816
FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASG
Sbjct: 192 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGLL 251
Query: 817 XXXXXXXXXXXRKARNNAA----SKERRPEAAGPXG 912
RKARN+ + + RR A G
Sbjct: 252 LLVLLLLVCCCRKARNSRSLGRMGRPRRDPRANSTG 287
>ref|XP_003127485.2| PREDICTED: leukocyte immunoglobulin-like receptor subfamily B
member 3-like [Sus scrofa].
Length = 155
Score = 214 bits (545), Expect = 6e-56
Identities = 110/141 (78%), Positives = 116/141 (82%), Gaps = 8/141 (5%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER
Sbjct: 12 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTE------AYEKPSLSSMTGT 438
EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTE A E S+ G
Sbjct: 72 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEPAAWNPATETRVRLSLAGL 131
Query: 439 V--VASGENVKLQCFSKVNFE 495
V + G + + C K +F+
Sbjct: 132 VLLILVGLSAEAWCSRKRSFK 152
>ref|XP_003127513.2| PREDICTED: platelet glycoprotein VI-like [Sus scrofa].
Length = 460
Score = 133 bits (335), Expect = 1e-31
Identities = 83/227 (36%), Positives = 119/227 (52%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G GQ T Q G L P + ALP SLVP + VT+ C+GP + YR+ + S + ++
Sbjct: 12 GLCLGQVTHAQTGALPKPSLQALPSSLVPLGKLVTVRCQGPPDVDLYRLEELRSGKYFDQ 71
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
++ P + G Y CSY+ G WSP SN L LV T + KPSLS+ T V+ GE
Sbjct: 72 AV--LSIPVMEQRFAGRYRCSYQNGTLWSPASNTLELVATGVFNKPSLSAQPSTAVSPGE 129
Query: 457 NVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGV 636
+V L+C S+ F+ F L K S S TP+ R +A F ++ V++ +GTYRC
Sbjct: 130 DVTLRCQSQYGFDQFALYKEGDS----GPSKTPE-RWYRADFPITTVTAAHSGTYRCYSF 184
Query: 637 FNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRL 777
+ P+LWS PS+ ++L V T T + P P T + + L
Sbjct: 185 SSGLPYLWSAPSDPLELVV---TGTSVTTTRLPPEPPSTVKGRPQTL 228
>ref|XP_003356107.1| PREDICTED: platelet glycoprotein VI, partial [Sus scrofa].
Length = 270
Score = 132 bits (332), Expect = 3e-31
Identities = 81/215 (37%), Positives = 115/215 (53%)
Frame = +1
Query: 109 GQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANT 288
GQ T Q G L P + ALP SLVP + VT+ C+GP + YR+ + S + ++
Sbjct: 4 GQVTHAQTGALPKPSLQALPSSLVPLGKLVTVRCQGPPDVDLYRLEELRSGKYFDQAV-- 61
Query: 289 VAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
++ P + G Y CSY+ G WSP SN L LV T + KPSLS+ T V+ GE+V L
Sbjct: 62 LSIPVMEQRFAGRYRCSYQNGTLWSPASNTLELVATGVFNKPSLSAQPSTAVSPGEDVTL 121
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
+C S+ F+ F L K S S TP+ R +A F ++ V++ +GTYRC +
Sbjct: 122 RCQSQYGFDQFALYKEGDS----GPSKTPE-RWYRADFPITTVTAAHSGTYRCYSFSSGL 176
Query: 649 PFLWSQPSNQVQLQVKEATDPDATESEHPTARPPT 753
P+LWS PS+ ++L V T T + P P T
Sbjct: 177 PYLWSAPSDPLELVV---TGTSVTTTRLPPEPPST 208
>ref|XP_003356109.1| PREDICTED: leukocyte immunoglobulin-like receptor subfamily A
member 6 [Sus scrofa].
Length = 377
Score = 127 bits (319), Expect = 9e-30
Identities = 87/230 (37%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Frame = +1
Query: 37 PAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTIL 207
PA +PGPR M+ G G TQ Q G L P + A PG LV PVTI
Sbjct: 25 PAAQPGPRGGDAMTPTLPALLCLGLSVGLGTQVQAGTLPKPTLWAEPGPLVTWYSPVTIW 84
Query: 208 CRGPKQAEAYRITRVGSPEPQER----EANTVA---FPELSPDLVGPYHCSYKIGEDWSP 366
C+G A+ + + GSP P R EA A P ++ D G Y C Y S
Sbjct: 85 CQGTLGAQEFLLYTEGSPTPWYRLSPLEAGDKAKFSIPYMTQDYAGRYRCYYISPTGRSE 144
Query: 367 LSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQE-Q 543
S+ L LV+T AYEKP+LS++ VVASG NV LQC S ++ FIL K +F
Sbjct: 145 PSDALELVVTGAYEKPALSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSFWTLD 204
Query: 544 SSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ R +A+F + V+ GT+RC G F P +WS PS+ ++L V
Sbjct: 205 TQRYPNRQTRALFPMGPVTPSHRGTFRCYGSFRDKPQVWSPPSDPLELLV 254
Score = 58.2 bits (139), Expect = 7e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE----------PQEREA 282
G P ++ALP +V VT+ C + + +T+ G + P +
Sbjct: 155 GAYEKPALSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSFWTLDTQRYPNRQTR 214
Query: 283 NTVAFPELSPDLVGPYHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
++P G + C + WSP S+ L L+++ KPSL + G VVASG
Sbjct: 215 ALFPMGPVTPSHRGTFRCYGSFRDKPQVWSPPSDPLELLVSGGSGKPSLLTPQGPVVASG 274
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLL 588
+++ LQC S ++++ F L K Q + PQ +QA F L
Sbjct: 275 QSLTLQCRSAISYDRFALAKEGARVLRQCPAWQPQAGLSQAHFPL 319
>ref|XP_003356106.1| PREDICTED: leukocyte immunoglobulin-like receptor subfamily A
member 6-like [Sus scrofa].
Length = 377
Score = 127 bits (319), Expect = 9e-30
Identities = 87/230 (37%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Frame = +1
Query: 37 PAGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTIL 207
PA +PGPR M+ G G TQ Q G L P + A PG LV PVTI
Sbjct: 25 PAAQPGPRGGDAMTPTLPALLCLGLSVGLGTQVQAGTLPKPTLWAEPGPLVTWYSPVTIW 84
Query: 208 CRGPKQAEAYRITRVGSPEPQER----EANTVA---FPELSPDLVGPYHCSYKIGEDWSP 366
C+G A+ + + GSP P R EA A P ++ D G Y C Y S
Sbjct: 85 CQGTLGAQEFLLYTEGSPTPWYRLSPLEAGDKAKFSIPYMTQDYAGRYRCYYISPTGRSE 144
Query: 367 LSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQE-Q 543
S+ L LV+T AYEKP+LS++ VVASG NV LQC S ++ FIL K +F
Sbjct: 145 PSDALELVVTGAYEKPALSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSFWTLD 204
Query: 544 SSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ R +A+F + V+ GT+RC G F P +WS PS+ ++L V
Sbjct: 205 TQRYPNRQTRALFPMGPVTPSHRGTFRCYGSFRDKPQVWSPPSDPLELLV 254
Score = 58.2 bits (139), Expect = 7e-09
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE----------PQEREA 282
G P ++ALP +V VT+ C + + +T+ G + P +
Sbjct: 155 GAYEKPALSALPSPVVASGGNVTLQCGSGHGYDRFILTKEGEHKSFWTLDTQRYPNRQTR 214
Query: 283 NTVAFPELSPDLVGPYHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
++P G + C + WSP S+ L L+++ KPSL + G VVASG
Sbjct: 215 ALFPMGPVTPSHRGTFRCYGSFRDKPQVWSPPSDPLELLVSGGSGKPSLLTPQGPVVASG 274
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLL 588
+++ LQC S ++++ F L K Q + PQ +QA F L
Sbjct: 275 QSLTLQCRSAISYDRFALAKEGARVLRQCPAWQPQAGLSQAHFPL 319
>ref|XP_003356099.1| PREDICTED: leukocyte immunoglobulin-like receptor subfamily B
member 3-like [Sus scrofa].
Length = 578
Score = 122 bits (306), Expect = 3e-28
Identities = 80/200 (40%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Frame = +1
Query: 121 QEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA-----N 285
Q Q G L P I A PG +VP PVT+ C+G QAE YR+ +VG E EA N
Sbjct: 25 QVQAGVLPKPSIRADPGPIVPKGSPVTLWCQGSPQAEVYRLYKVGDSGLWEDEATQDSRN 84
Query: 286 TVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGEN 459
T F LS G Y C+Y WS S+ L LV+T Y PSLS+ VVASG N
Sbjct: 85 TARFHFESLSSRHAGRYQCAYHSRNSWSGRSDPLALVVTGLYRAPSLSAHPNPVVASGGN 144
Query: 460 VKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGA--QAIFLLSQVSSVQAGTYRCCG 633
V L C S+ L+K G+ + + G +A+F L V++ GTYRC
Sbjct: 145 VSLSCSSQFWSGTLHLLKEGGAEPPRRSTWRKFGNSGRREALFPLGPVNASHGGTYRCYD 204
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
+ P+LWSQPS+ + LQV
Sbjct: 205 SPSSDPYLWSQPSDPLHLQV 224
Score = 87.8 bits (216), Expect = 8e-18
Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 6/225 (2%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITR-VGSPEPQEREA-NTVAFP--ELSPD 315
P ++A PGSLV +T+ CR + +T+ GS P + ++ FP +S
Sbjct: 231 PSLSAQPGSLVLLGDRLTLQCRSDAGFGRFALTKDEGSTPPLRLDGQHSPDFPLGRVSHT 290
Query: 316 LVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVN 489
G Y C ++ + + WS S L +++ Y KPSLS+ GT V+ GENV LQC S++
Sbjct: 291 RGGRYRCYAAHNLSDAWSAPSAPLDILIAGMYRKPSLSAHPGTSVSWGENVTLQCLSEIV 350
Query: 490 FEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQP 669
+ F L K Q QA F LS ++S TYRC + P++ S P
Sbjct: 351 LDTFHLFKEGSLAPAQNLRLQDMVAPLQANFTLSPMTSAHNETYRCYTSQSTSPYVLSNP 410
Query: 670 SNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVA 804
S+ +QL + ++ ES Q L LLIG VA
Sbjct: 411 SDPLQLLISGGSEDGLMES-------GLQRGLPWYLSLLIGVSVA 448
Score = 64.7 bits (156), Expect = 7e-11
Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 17/199 (8%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA---------NTVAFP 300
P ++A P +V V++ C + + + G EP R FP
Sbjct: 129 PSLSAHPNPVVASGGNVSLSCSSQFWSGTLHLLKEGGAEPPRRSTWRKFGNSGRREALFP 188
Query: 301 --ELSPDLVGPYHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVK 465
++ G Y C D WS S+ L+L +T Y +PSLS+ G++V G+ +
Sbjct: 189 LGPVNASHGGTYRCYDSPSSDPYLWSQPSDPLHLQVTGVYREPSLSAQPGSLVLLGDRLT 248
Query: 466 LQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGR---GAQAIFLLSQVSSVQAGTYRCCGV 636
LQC S F F L K+ G STP R F L +VS + G YRC
Sbjct: 249 LQCRSDAGFGRFALTKDEG--------STPPLRLDGQHSPDFPLGRVSHTRGGRYRCYAA 300
Query: 637 FNQGPFLWSQPSNQVQLQV 693
N WS PS + + +
Sbjct: 301 HNLSD-AWSAPSAPLDILI 318
>ref|XP_003134223.1| PREDICTED: leukocyte immunoglobulin-like receptor subfamily B
member 3-like [Sus scrofa].
Length = 761
Score = 115 bits (289), Expect = 3e-26
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Frame = +1
Query: 40 AGRPGPR---IMSXXXXXXXXXGFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILC 210
+ +PGPR M+ G G TQ Q G L P + A PG LV PVTI C
Sbjct: 68 SAQPGPRGGDAMTPTLPGLLCLGLSVGLGTQVQAGTLPKPTLWAEPGPLVTWGSPVTIWC 127
Query: 211 RGPKQAEAYRITRVGSPEPQEREANTVAFPE-------LSPDLVGPYHCSYKIGEDWSPL 369
+G A+ + + + G P P +R+ A + ++ G Y C Y S
Sbjct: 128 QGALWAQEFHLVKEGIPTPWDRQTPREAGDKAKFSIQYMTQVYAGRYRCYYISPTGRSEP 187
Query: 370 SNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ---E 540
S+ L LV+T A EKP+LS++ VVASG NV LQC S ++ FIL K G H +
Sbjct: 188 SDTLELVVTGASEKPALSALPSPVVASGGNVTLQCGSWHRYDRFILTK-EGEHKSSWTLD 246
Query: 541 QSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
P G+ +A+F + V+ GT+RC G F P +WS PS+ ++L V
Sbjct: 247 TQRRPDGQ-TRALFPVGPVTPSHRGTFRCYGYFRDKPQVWSHPSDPLELLV 296
Score = 85.9 bits (211), Expect = 3e-17
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 12/237 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA-------NT 288
+G+ P + G ++ Q +T+ CR + + + + G + Q+ A +
Sbjct: 297 SGDSGKPSLLIPQGHVMATGQSLTLQCRSAISYDRFALAKEGPQDLQQSPAWQPLAGLSQ 356
Query: 289 VAFP--ELSPDLVGPYHC--SYKIGEDWS-PLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
FP ++S G Y C + + WS P L LV +S G VA+G
Sbjct: 357 AHFPLGQVSSHPGGRYRCYGGHNLSSLWSAPSDPLDILVAGRLIGTAYISVQPGPSVAAG 416
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
+NV L C S V + F+L K +H S PQ QA F + V+S GTYRC G
Sbjct: 417 QNVTLLCRSWVPMDTFLLSKEGAAHPPLRLRSQPQAGQNQAQFSMGPVTSAHGGTYRCYG 476
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVA 804
+ P+L SQPS ++L V ++ + PT P+ L LLIG VA
Sbjct: 477 SLTRDPYLLSQPSQPLELVVSGSSGAPSP----PTGPIPSSPGLPWYLSLLIGVSVA 529
Score = 74.3 bits (181), Expect = 9e-14
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS------------PEPQER 276
G P ++ALP +V VT+ C + + + +T+ G P+ Q R
Sbjct: 197 GASEKPALSALPSPVVASGGNVTLQCGSWHRYDRFILTKEGEHKSSWTLDTQRRPDGQTR 256
Query: 277 EANTVAFPELSPDLVGPYHCSYKIGED----WSPLSNLLYLVMTEAYEKPSLSSMTGTVV 444
V ++P G + C Y D WS S+ L L+++ KPSL G V+
Sbjct: 257 ALFPVG--PVTPSHRGTFRC-YGYFRDKPQVWSHPSDPLELLVSGDSGKPSLLIPQGHVM 313
Query: 445 ASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYR 624
A+G+++ LQC S ++++ F L K Q + P +QA F L QVSS G YR
Sbjct: 314 ATGQSLTLQCRSAISYDRFALAKEGPQDLQQSPAWQPLAGLSQAHFPLGQVSSHPGGRYR 373
Query: 625 CCGVFNQGPFLWSQPSNQVQLQV 693
C G N LWS PS+ + + V
Sbjct: 374 CYGGHNLSS-LWSAPSDPLDILV 395
Score = 50.4 bits (119), Expect = 1e-06
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Frame = +1
Query: 211 RGPKQAEAYRITRVGSPEPQEREANTVAFPELSPDLVGPYHCSY---KIGEDWSP-LSNL 378
RGP+ + A + P P +T A SP + P H + + G+ +P L L
Sbjct: 27 RGPRLSSAMCLGPRADPGPPSNTGDTGAQRPPSPGALAPPHSAQPGPRGGDAMTPTLPGL 86
Query: 379 LYL---------VMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHT 531
L L V KP+L + G +V G V + C + + F L+K
Sbjct: 87 LCLGLSVGLGTQVQAGTLPKPTLWAEPGPLVTWGSPVTIWCQGALWAQEFHLVKEGIPTP 146
Query: 532 FQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATDP 711
+ Q TP+ G +A F + ++ V AG YRC + G S+PS+ ++L V A++
Sbjct: 147 WDRQ--TPREAGDKAKFSIQYMTQVYAGRYRCYYISPTGR---SEPSDTLELVVTGASEK 201
Query: 712 DA 717
A
Sbjct: 202 PA 203
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,700,063
Number of extensions: 859706
Number of successful extensions: 3524
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3423
Number of HSP's successfully gapped: 74
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156486.1| platelet glycoprotein VI precursor [Mus musc... 122 6e-28
Alignment gi|NP_038560.1| leukocyte immunoglobulin-like receptor subfamil... 113 2e-25
Alignment gi|NP_001074708.2| leukocyte immunoglobulin-like receptor [Mus ... 112 3e-25
Alignment gi|NP_032173.1| mast cell surface glycoprotein Gp49A precursor ... 110 2e-24
Alignment gi|NP_035218.1| paired-Ig-like receptor A11 [Mus musculus]. 106 3e-23
Alignment gi|NP_035217.1| paired-Ig-like receptor A1 [Mus musculus]. 103 2e-22
Alignment gi|NP_032874.1| paired-Ig-like receptor A6 isoform a [Mus muscu... 100 1e-21
Alignment gi|NP_035223.1| paired-Ig-like receptor A6 isoform b [Mus muscu... 100 1e-21
Alignment gi|NP_001160144.1| predicted gene 14548 [Mus musculus]. 100 1e-21
Alignment gi|NP_035219.2| paired-Ig-like receptor A2 [Mus musculus]. 100 2e-21
>ref|NP_001156486.1| platelet glycoprotein VI precursor [Mus musculus].
Length = 313
Score = 122 bits (305), Expect = 6e-28
Identities = 76/225 (33%), Positives = 115/225 (51%)
Frame = +1
Query: 112 QNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV 291
Q Q Q+G L P + A P SLVP Q V + C+GP + YR+ ++ PE E + + +
Sbjct: 17 QVIQTQSGPLPKPSLQAQPSSLVPLGQSVILRCQGPPDVDLYRLEKL-KPEKYE-DQDFL 74
Query: 292 AFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
P + G Y CSY+ G WS S+ L L+ T Y KPSLS+ + V G +V L+
Sbjct: 75 FIPTMERSNAGRYRCSYQNGSHWSLPSDQLELIATGVYAKPSLSAHPSSAVPQGRDVTLK 134
Query: 472 CFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGP 651
C S +F+ F+L K + +++ + +A F + V++ +GTYRC + P
Sbjct: 135 CQSPYSFDEFVLYKEGDTGSYKRPE-----KWYRANFPIITVTAAHSGTYRCYSFSSSSP 189
Query: 652 FLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLL 786
+LWS PS+ + L V T AT S+ PT T +R +L
Sbjct: 190 YLWSAPSDPLVLVV---TGLSATPSQVPTEESFPVTESSRRPSIL 231
>ref|NP_038560.1| leukocyte immunoglobulin-like receptor subfamily B member 4
precursor [Mus musculus].
Length = 335
Score = 113 bits (283), Expect = 2e-25
Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 9/238 (3%)
Frame = +1
Query: 118 TQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA----- 282
T Q G+L P+I A PGS++ V C+G +A+ Y + + S P + +
Sbjct: 19 TAVQAGHLPKPIIWAEPGSVIAAYTSVITWCQGSWEAQYYHLYKEKSVNPWDTQVPLETR 78
Query: 283 NTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
N F P ++ G Y C Y+ +S S+ + LVMT AYE PSLS + V SG
Sbjct: 79 NKAKFNIPSMTTSYAGIYKCYYESAAGFSEHSDAMELVMTGAYENPSLSVYPSSNVTSGV 138
Query: 457 NVKLQCFSKVNFEAFILIKNNGSH--TFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCC 630
++ C S + F FILI+ G H ++ S + + A F+L V+ GT+RC
Sbjct: 139 SISFSCSSSIVFGRFILIQ-EGKHGLSWTLDSQHQANQPSYATFVLDAVTPNHNGTFRCY 197
Query: 631 GVFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVA 804
G F P +WS+PSN + L + E D +T PT+ E +LIG V+
Sbjct: 198 GYFRNEPQVWSKPSNSLDLMISETKDQSST---------PTEDGLETYQKILIGVLVS 246
>ref|NP_001074708.2| leukocyte immunoglobulin-like receptor [Mus musculus].
Length = 295
Score = 112 bits (281), Expect = 3e-25
Identities = 72/214 (33%), Positives = 95/214 (44%), Gaps = 9/214 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQE- 273
G GQ T GN P ++ PG +V + VTI C A YR+ + G P P
Sbjct: 12 GLNLGQETSMSEGNPHKPTLSVQPGLVVAKGKQVTISCEVTTGAREYRLYKEGGPHPWRT 71
Query: 274 ----REANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
+ N F P + G Y C YK WS S+ L L +T Y KPSLS+
Sbjct: 72 RNTPKTTNKAQFLIPSIEQRSGGIYRCYYKTPTGWSEHSDPLELAVTGLYSKPSLSTQPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGS--HTFQEQSSTPQGRGAQAIFLLSQVSSVQ 609
VV SGE V LQC S + F F+L K QE Q +F + V+ Q
Sbjct: 132 NVVNSGETVTLQCVSTLGFNRFVLTKEGEQKWSLIQESEFINSTGQFQGLFTVGPVTPSQ 191
Query: 610 AGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATDP 711
+RC G P +WS+PS+ +++ V EA P
Sbjct: 192 RWIFRCYGYHVNSPQVWSEPSDLLEIHVSEADQP 225
>ref|NP_032173.1| mast cell surface glycoprotein Gp49A precursor [Mus musculus].
Length = 303
Score = 110 bits (274), Expect = 2e-24
Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 9/238 (3%)
Frame = +1
Query: 118 TQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA----- 282
T Q G+L P+I A PGS++ V I C G +A+ Y + + S P + E
Sbjct: 19 TAVQAGHLPKPIIWAEPGSVIAAYTSVIIWCWGSWEAQYYYLDKEKSVNPWDTEVPLENR 78
Query: 283 NTVAFPE--LSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGE 456
N F ++ G Y+C YK +S S+ + LVMT AYE PSLS + V SG
Sbjct: 79 NKTKFKIRFMTASYAGIYNCYYKSAAGFSEHSDAMELVMTGAYENPSLSVYPSSNVTSGV 138
Query: 457 NVKLQCFSKVNFEAFILIKNNGSH--TFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCC 630
++ +C S F FILI+ G H ++ S + A F+L V+ GT+RC
Sbjct: 139 SISFKCSSSTLFGRFILIQ-EGKHGLSWTLDSQHQANQPTHATFVLDAVAPNHNGTFRCY 197
Query: 631 GVFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVA 804
G F P +WS+PSN + L + E + T PT+ E +LIG V+
Sbjct: 198 GFFRNEPQVWSKPSNSLDLMISETKEQSCT---------PTEDGLETYQKILIGVLVS 246
>ref|NP_035218.1| paired-Ig-like receptor A11 [Mus musculus].
Length = 680
Score = 106 bits (264), Expect = 3e-23
Identities = 69/200 (34%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQ-----EREANTVA 294
+GNL P I A PGS++ K+ +TI C+G AE Y + GS + Q ++ N
Sbjct: 220 SGNLQKPTIKAEPGSVIASKRAMTIWCQGNLDAEVYFLHNEGSQKTQSTQTLQQPGNKGR 279
Query: 295 F--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
F P ++ G Y C WS S+ L LV+T YE KP LS + VV +G N+
Sbjct: 280 FFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEHYKPRLSVLPSPVVTAGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNN---GSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
L C S +++ FIL K + G+ E S+ R +A+F++ + GT+RC G
Sbjct: 340 TLHCASDFHYDKFILTKEDKKFGNSLDTEHISS--SRQYRALFIIGPTTPTHTGTFRCYG 397
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
F P LWS PS+ Q+ +
Sbjct: 398 YFKNAPQLWSVPSDLQQILI 417
Score = 85.9 bits (211), Expect = 4e-17
Identities = 63/196 (32%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V + VT LC A Y + + G + +++ AN F
Sbjct: 24 GSLPKPILRVQPHSVVSRRTKVTFLCEETIGANEYHLYKDGKLYKTVTKNKQKPANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY ++ S S+ L LV+T Y PSLS+ VV SG V LQ
Sbjct: 84 SLSNVDLSNAGQYRCSYNTQDESSGYSDPLELVVTGDYWTPSLSAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHT--FQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
C S N FIL Q+ R A+F + V+ Q +RC
Sbjct: 144 CESWHNNHRFILTVEGPQKLSWMQDSQYNNSTRKYHALFSVGPVTPNQRWIFRCYSYDRN 203
Query: 646 GPFLWSQPSNQVQLQV 693
P++WS PS V+L V
Sbjct: 204 RPYVWSPPSESVELLV 219
Score = 73.2 bits (178), Expect = 3e-13
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV------ 291
+G P + G ++ P +T+ C + + + +VG + + +
Sbjct: 418 SGLSKKPSLLTHQGHILDPGMTLTLQCFSDINYDRFALHKVGGADIMQHSSQQTDTGFSV 477
Query: 292 ---AFPELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASG 453
+S G Y C ++ + +WS S L +++T PSLS V SG
Sbjct: 478 ANFTLGYVSSSTGGQYRCYGAHNLSSEWSASSEPLDILITGQLPLTPSLSVKPNHTVHSG 537
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E V L C+S + + FIL K + S + +QA F +S V+S +GTYRC G
Sbjct: 538 ETVSLLCWSMDSVDTFILSKEGSAQQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYG 597
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQ 756
+ +L S S V+L V E + + P PT+
Sbjct: 598 AQDSSFYLLSSASAPVELTVSETIESSTWSPKRPIPPIPTE 638
Score = 63.2 bits (152), Expect = 3e-10
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITR----VGSPEPQEREANTVAFPEL--- 306
P ++ LP +V +T+ C + + +T+ G+ E +++ + L
Sbjct: 323 PRLSVLPSPVVTAGGNMTLHCASDFHYDKFILTKEDKKFGNSLDTEHISSSRQYRALFII 382
Query: 307 ---SPDLVGPYHCS---YKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+P G + C + WS S+L ++++ +KPSL + G ++ G + L
Sbjct: 383 GPTTPTHTGTFRCYGYFKNAPQLWSVPSDLQQILISGLSKKPSLLTHQGHILDPGMTLTL 442
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
QCFS +N++ F L K G+ Q S + A F L VSS G YRC G N
Sbjct: 443 QCFSDINYDRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSSTGGQYRCYGAHNLS 502
Query: 649 PFLWSQPSNQVQLQV 693
WS S + + +
Sbjct: 503 S-EWSASSEPLDILI 516
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/112 (32%), Positives = 59/112 (52%)
Frame = +1
Query: 358 WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ 537
WSP S + L+++ +KP++ + G+V+AS + + C ++ E + L N GS Q
Sbjct: 208 WSPPSESVELLVSGNLQKPTIKAEPGSVIASKRAMTIWCQGNLDAEVYFL-HNEGSQKTQ 266
Query: 538 EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ T Q G + F + V+ AG YRC + G WSQPS+ ++L V
Sbjct: 267 -STQTLQQPGNKGRFFIPSVTQQHAGQYRCYCYSSAG---WSQPSDTLELVV 314
>ref|NP_035217.1| paired-Ig-like receptor A1 [Mus musculus].
Length = 680
Score = 103 bits (257), Expect = 2e-22
Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 12/200 (6%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQ-----EREANTVA 294
+GNL P I A PG ++ K+ +TI C+G AE Y + GS + Q ++ N
Sbjct: 220 SGNLQKPTIKAEPGPVIASKRAMTIWCQGNLDAEVYFLHNEGSQKTQSTQTLQQPGNKGK 279
Query: 295 F--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
F P ++ G Y C WS S+ L LV+T YE KP LS + VV +G N+
Sbjct: 280 FFIPSMTRQHAGQYRCYCYGSAGWSQPSDTLELVVTGIYEHYKPRLSVLPSPVVTAGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNN---GSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
L C S +++ FIL K + G+ E S+ R +A+F++ + GT+RC G
Sbjct: 340 TLHCASDFHYDKFILTKEDKKFGNSLDTEHISS--SRQYRALFIIGPTTPTHTGTFRCYG 397
Query: 634 VFNQGPFLWSQPSNQVQLQV 693
F P LWS PS+ Q+ +
Sbjct: 398 YFKNAPQLWSVPSDLQQILI 417
Score = 77.0 bits (188), Expect = 2e-14
Identities = 63/196 (32%), Positives = 83/196 (42%), Gaps = 9/196 (4%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V VT C A YR+ + G + +++ AN F
Sbjct: 24 GSLPKPILRVQPDSVVSRWTKVTFFCEETIGANEYRLYKDGKLYKTVTKNKQKPANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY S S+ L LV+T Y PSL + VV SG V LQ
Sbjct: 84 SLSNVDLRNAGQYRCSYSTQYKSSGYSDPLELVVTGDYWTPSLLAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHTFQEQSS--TPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
C S N FIL Q S R A+F + V+ Q RC
Sbjct: 144 CESWHNDHKFILTVEGPQKLSWTQDSQYNYSTRKYHALFSVGPVTPNQRWICRCYSYDRN 203
Query: 646 GPFLWSQPSNQVQLQV 693
P++WS PS V+L V
Sbjct: 204 RPYVWSPPSESVELLV 219
Score = 70.5 bits (171), Expect = 2e-12
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV------ 291
+G P + G ++ P +T+ C + + + +VG + + +
Sbjct: 418 SGLSKKPSLLTHQGHILDPGMTLTLQCFSDINYDRFALHKVGGADIMQHSSQQTDTGFSV 477
Query: 292 ---AFPELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASG 453
+S G Y C ++ + +WS S L +++T PSLS V SG
Sbjct: 478 ANFTLGYVSSSTGGQYRCYGAHNLSSEWSASSEPLDILITGQLPLTPSLSVKPNHTVHSG 537
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E V L C+S + + FIL K + + S + +QA F +S V+S +GTYR G
Sbjct: 538 ETVSLLCWSMDSLDTFILSKEGSTQQPLQLKSKSHDQQSQAEFSMSAVTSHLSGTYRSYG 597
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQ 756
+ +L S S V+L V E + + P PT+
Sbjct: 598 AQDSSFYLLSSASAPVELTVSETIESSTWSPKRPIPPIPTE 638
Score = 63.2 bits (152), Expect = 3e-10
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITR----VGSPEPQEREANTVAFPEL--- 306
P ++ LP +V +T+ C + + +T+ G+ E +++ + L
Sbjct: 323 PRLSVLPSPVVTAGGNMTLHCASDFHYDKFILTKEDKKFGNSLDTEHISSSRQYRALFII 382
Query: 307 ---SPDLVGPYHCS---YKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+P G + C + WS S+L ++++ +KPSL + G ++ G + L
Sbjct: 383 GPTTPTHTGTFRCYGYFKNAPQLWSVPSDLQQILISGLSKKPSLLTHQGHILDPGMTLTL 442
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
QCFS +N++ F L K G+ Q S + A F L VSS G YRC G N
Sbjct: 443 QCFSDINYDRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSSTGGQYRCYGAHNLS 502
Query: 649 PFLWSQPSNQVQLQV 693
WS S + + +
Sbjct: 503 S-EWSASSEPLDILI 516
Score = 54.7 bits (130), Expect = 1e-07
Identities = 35/112 (31%), Positives = 58/112 (51%)
Frame = +1
Query: 358 WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ 537
WSP S + L+++ +KP++ + G V+AS + + C ++ E + L N GS Q
Sbjct: 208 WSPPSESVELLVSGNLQKPTIKAEPGPVIASKRAMTIWCQGNLDAEVYFL-HNEGSQKTQ 266
Query: 538 EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ T Q G + F + ++ AG YRC + G WSQPS+ ++L V
Sbjct: 267 -STQTLQQPGNKGKFFIPSMTRQHAGQYRC---YCYGSAGWSQPSDTLELVV 314
>ref|NP_032874.1| paired-Ig-like receptor A6 isoform a [Mus musculus].
Length = 680
Score = 100 bits (250), Expect = 1e-21
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAY-----RITRVGSPEPQEREANTVA 294
+GNL P I A PGS++ K+ +TI C+G AE Y + + S + ++ N
Sbjct: 220 SGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQQPGNKGR 279
Query: 295 F--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
F P ++ G Y C WS S+ L LV+T YE +P LS + VV G N+
Sbjct: 280 FFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEYNEPRLSLLPSPVVRPGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNNGSH-TFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
L C S+ +++ FIL K + + R QA+F++ + GT+RC G +
Sbjct: 340 TLHCASQGHYDKFILTKEDKKFANALDTEHISSSRQYQALFIIGPTTPTHTGTFRCYGYY 399
Query: 640 NQGPFLWSQPSNQVQLQV 693
P LWS PSN Q+ +
Sbjct: 400 KNTPQLWSVPSNLQQILI 417
Score = 84.7 bits (208), Expect = 1e-16
Identities = 64/196 (32%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V + VT C A YR+ + G + ++++AN F
Sbjct: 24 GSLPKPILRVQPDSVVSRRTNVTFFCEETIGANEYRLYKDGKLYKTVTKNKQKQANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY ++ S S+ L LV+T Y PSLS+ VV SG V LQ
Sbjct: 84 SFSNVDLSNAGQYECSYSTQDESSGYSDPLELVVTGHYWTPSLSAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHTFQEQSS--TPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
C S N FIL Q S R A+F + V+ Q RC
Sbjct: 144 CESWHNDHKFILTVEGPQKLSWTQDSQYNYSTRKYHALFSVGPVTPNQRWICRCYSYDRN 203
Query: 646 GPFLWSQPSNQVQLQV 693
P++WS PS V+L V
Sbjct: 204 RPYVWSPPSESVELLV 219
Score = 72.0 bits (175), Expect = 7e-13
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 12/221 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV------ 291
+G P + G ++ P +T+ C + + + +VG + + +
Sbjct: 418 SGLSKKPSLLTHQGHILDPGMTLTLQCFSDMNYDRFALHKVGGADIMQHSSQQTDIGFSV 477
Query: 292 ---AFPELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASG 453
+S G Y C ++ + +WS S L +++T PSLS V SG
Sbjct: 478 ANFTLGYVSSSTGGQYRCYGAHNLSSEWSASSEPLDILITGQLPLTPSLSVQPNHTVHSG 537
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E V L C+S + + FIL K + S + +QA F +S V+S +GTYRC G
Sbjct: 538 ETVSLLCWSMDSVDTFILSKEGSAQQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYG 597
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQ 756
+ +L S S V+L V + + + P PT+
Sbjct: 598 AQDSSFYLLSSASAPVELTVSGTIESSSWPPKRPNPPIPTE 638
Score = 65.5 bits (158), Expect = 6e-11
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPE-------- 303
P ++ LP +V P +T+ C + + +T+ + ++
Sbjct: 323 PRLSLLPSPVVRPGGNMTLHCASQGHYDKFILTKEDKKFANALDTEHISSSRQYQALFII 382
Query: 304 --LSPDLVGPYHCS--YK-IGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+P G + C YK + WS SNL ++++ +KPSL + G ++ G + L
Sbjct: 383 GPTTPTHTGTFRCYGYYKNTPQLWSVPSNLQQILISGLSKKPSLLTHQGHILDPGMTLTL 442
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
QCFS +N++ F L K G+ Q S + A F L VSS G YRC G N
Sbjct: 443 QCFSDMNYDRFALHKVGGADIMQHSSQQTDIGFSVANFTLGYVSSSTGGQYRCYGAHNLS 502
Query: 649 PFLWSQPSNQVQLQV 693
WS S + + +
Sbjct: 503 S-EWSASSEPLDILI 516
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Frame = +1
Query: 358 WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ 537
WSP S + L+++ +KP++ + G+V+ S + + C ++ E + L T
Sbjct: 208 WSPPSESVELLVSGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKT-- 265
Query: 538 EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVK---EATD 708
+ + T Q G + F + V+ AG YRC + G WSQPS+ ++L V E +
Sbjct: 266 QSTQTLQQPGNKGRFFIPSVTQQHAGQYRCYCYSSAG---WSQPSDTLELVVTGIYEYNE 322
Query: 709 PDATESEHPTARP 747
P + P RP
Sbjct: 323 PRLSLLPSPVVRP 335
>ref|NP_035223.1| paired-Ig-like receptor A6 isoform b [Mus musculus].
Length = 564
Score = 100 bits (250), Expect = 1e-21
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAY-----RITRVGSPEPQEREANTVA 294
+GNL P I A PGS++ K+ +TI C+G AE Y + + S + ++ N
Sbjct: 220 SGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQQPGNKGR 279
Query: 295 F--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
F P ++ G Y C WS S+ L LV+T YE +P LS + VV G N+
Sbjct: 280 FFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTVIYEYNEPRLSLLPSPVVRPGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNNGSH-TFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
L C S+ +++ FIL K + + R QA+F++ + GT+RC G +
Sbjct: 340 TLHCASQGHYDKFILTKEDKKFANALDTEHISSSRQYQALFIIGPTTPTHTGTFRCYGYY 399
Query: 640 NQGPFLWSQPSNQVQLQV 693
P LWS PSN Q+ +
Sbjct: 400 KNTPQLWSVPSNLQQILI 417
Score = 84.7 bits (208), Expect = 1e-16
Identities = 64/196 (32%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V + VT C A YR+ + G + ++++AN F
Sbjct: 24 GSLPKPILRVQPDSVVSRRTNVTFFCEETIGANEYRLYKDGKLYKTVTKNKQKQANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY ++ S S+ L LV+T Y PSLS+ VV SG V LQ
Sbjct: 84 SFSNVDLSNAGQYECSYSTQDESSGYSDPLELVVTGHYWTPSLSAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHTFQEQSS--TPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
C S N FIL Q S R A+F + V+ Q RC
Sbjct: 144 CESWHNDHKFILTVEGPQKLSWTQDSQYNYSTRKYHALFSVGPVTPNQRWICRCYSYDRN 203
Query: 646 GPFLWSQPSNQVQLQV 693
P++WS PS V+L V
Sbjct: 204 RPYVWSPPSESVELLV 219
Score = 63.9 bits (154), Expect = 2e-10
Identities = 55/205 (26%), Positives = 87/205 (42%), Gaps = 14/205 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPE-------- 303
P ++ LP +V P +T+ C + + +T+ + ++
Sbjct: 323 PRLSLLPSPVVRPGGNMTLHCASQGHYDKFILTKEDKKFANALDTEHISSSRQYQALFII 382
Query: 304 --LSPDLVGPYHCS--YK-IGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASGENVK 465
+P G + C YK + WS SNL ++++ PSLS V SGE V
Sbjct: 383 GPTTPTHTGTFRCYGYYKNTPQLWSVPSNLQQILISGQLPLTPSLSVQPNHTVHSGETVS 442
Query: 466 LQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
L C+S + + FIL K + S + +QA F +S V+S +GTYRC G +
Sbjct: 443 LLCWSMDSVDTFILSKEGSAQQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYGAQDS 502
Query: 646 GPFLWSQPSNQVQLQVKEATDPDAT 720
+L S S V+L V + D T
Sbjct: 503 SFYLLSSASAPVELTVSATENQDHT 527
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Frame = +1
Query: 358 WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ 537
WSP S + L+++ +KP++ + G+V+ S + + C ++ E + L T
Sbjct: 208 WSPPSESVELLVSGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKT-- 265
Query: 538 EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQVK---EATD 708
+ + T Q G + F + V+ AG YRC + G WSQPS+ ++L V E +
Sbjct: 266 QSTQTLQQPGNKGRFFIPSVTQQHAGQYRCYCYSSAG---WSQPSDTLELVVTVIYEYNE 322
Query: 709 PDATESEHPTARP 747
P + P RP
Sbjct: 323 PRLSLLPSPVVRP 335
>ref|NP_001160144.1| predicted gene 14548 [Mus musculus].
Length = 680
Score = 100 bits (250), Expect = 1e-21
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAY-----RITRVGSPEPQEREANTVA 294
+GNL P I A PGS++ K+ +TI C+G AE Y + + S + ++ N
Sbjct: 220 SGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQQPGNKGK 279
Query: 295 F--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
F P ++ G Y C WS S+ L LV+T YE +P LS + VV +G N+
Sbjct: 280 FFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEYYEPRLSVLPSPVVTAGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNNGSHTFQ-EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
L C S +++ FIL K + T + R +A+F++ + GT+RC G +
Sbjct: 340 TLHCASDFHYDKFILTKEDKKFTSSLDTEHISSSRQYRALFIIGPTTPTHTGTFRCYGYY 399
Query: 640 NQGPFLWSQPSNQVQLQV 693
P LWS PS Q+ +
Sbjct: 400 KNAPQLWSVPSALQQILI 417
Score = 85.9 bits (211), Expect = 4e-17
Identities = 63/196 (32%), Positives = 88/196 (44%), Gaps = 9/196 (4%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V + VT LC A Y + + G + +++ AN F
Sbjct: 24 GSLPKPILRVQPHSVVSRRTKVTFLCEETIGANEYHLYKDGKLYKTVTKNKQKPANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY ++ S S+ L LV+T Y PSLS+ VV SG V LQ
Sbjct: 84 SLSNVDLSNAGQYRCSYNTQDESSGYSDPLELVVTGDYWTPSLSAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHT--FQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQ 645
C S N FIL Q+ R A+F + V+ Q +RC
Sbjct: 144 CESWHNNHRFILTVEGPQKLSWMQDSQYNNSTRKYHALFSVGPVTPNQRWIFRCYSYDRN 203
Query: 646 GPFLWSQPSNQVQLQV 693
P++WS PS V+L V
Sbjct: 204 RPYVWSPPSESVELLV 219
Score = 70.9 bits (172), Expect = 1e-12
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV------ 291
+G P + G ++ P +T+ C + + + +VG + + +
Sbjct: 418 SGLSKKPSLLTHQGHILDPGMTLTLQCYSDINYDRFALHKVGGADIMQHSSQQTDTGFSV 477
Query: 292 ---AFPELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASG 453
+S G Y C ++ + +WS S L +++T PSLS V SG
Sbjct: 478 ANFTLGYVSSSTGGQYRCYGAHNLSSEWSASSEPLDILITGQLPLTPSLSVQPNHTVHSG 537
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E V L C+S + + FIL K + S + +QA F +S V+S +GTYRC G
Sbjct: 538 ETVSLLCWSMDSVDTFILSKEGSAQQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYG 597
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQ 756
+ +L S S V+L V + + P PT+
Sbjct: 598 AQDSSFYLLSSASAPVELTVSGTIESSTWPPKRPIPPIPTE 638
Score = 60.8 bits (146), Expect = 2e-09
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPE-------- 303
P ++ LP +V +T+ C + + +T+ + ++
Sbjct: 323 PRLSVLPSPVVTAGGNMTLHCASDFHYDKFILTKEDKKFTSSLDTEHISSSRQYRALFII 382
Query: 304 --LSPDLVGPYHCS--YKIGED-WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+P G + C YK WS S L ++++ +KPSL + G ++ G + L
Sbjct: 383 GPTTPTHTGTFRCYGYYKNAPQLWSVPSALQQILISGLSKKPSLLTHQGHILDPGMTLTL 442
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
QC+S +N++ F L K G+ Q S + A F L VSS G YRC G N
Sbjct: 443 QCYSDINYDRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSSTGGQYRCYGAHNLS 502
Query: 649 PFLWSQPSNQVQLQV 693
WS S + + +
Sbjct: 503 S-EWSASSEPLDILI 516
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/112 (28%), Positives = 56/112 (50%)
Frame = +1
Query: 358 WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ 537
WSP S + L+++ +KP++ + G+V+ S + + C ++ E + L T
Sbjct: 208 WSPPSESVELLVSGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKT-- 265
Query: 538 EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQPSNQVQLQV 693
+ + T Q G + F + V+ AG YRC + G WSQPS+ ++L V
Sbjct: 266 QSTQTLQQPGNKGKFFIPSVTQQHAGQYRCYCYSSAG---WSQPSDTLELVV 314
>ref|NP_035219.2| paired-Ig-like receptor A2 [Mus musculus].
Length = 680
Score = 100 bits (249), Expect = 2e-21
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 10/198 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREA-------NT 288
+GNL P I A PGS++ K+ +TI C+G AE Y + S + Q +
Sbjct: 220 SGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQEPGNKGR 279
Query: 289 VAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYE--KPSLSSMTGTVVASGENV 462
P ++ G Y C WS S+ L LV+T YE +P LS + VV +G N+
Sbjct: 280 FFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEYYEPRLSVLPSPVVTAGGNM 339
Query: 463 KLQCFSKVNFEAFILIKNNGSHTFQ-EQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVF 639
L C S +++ FIL K + T + R +A+F++ + GT+RC G +
Sbjct: 340 TLHCASDFHYDKFILTKEDKKFTSSLDTEHISSSRQYRALFIIGPTTPTHTGTFRCYGYY 399
Query: 640 NQGPFLWSQPSNQVQLQV 693
P LWS PS Q+ +
Sbjct: 400 KNAPQLWSVPSALQQILI 417
Score = 85.1 bits (209), Expect = 7e-17
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS-----PEPQEREANTVAF 297
G+L P++ P S+V + VT LC A YR+ + G + +++ AN F
Sbjct: 24 GSLPKPILRVQPDSVVSRRTKVTFLCEETIGANEYRLYKDGKLYKTVTKNKQKPANKAEF 83
Query: 298 PELSPDL--VGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQ 471
+ DL G Y CSY S S+ L LV+TE Y PSLS+ VV SG V LQ
Sbjct: 84 SFSNVDLSNAGQYECSYSTQYKSSGYSDPLKLVVTEDYWTPSLSAQASPVVTSGGYVTLQ 143
Query: 472 CFSKVNFEAFILIKNNGSHTF---QEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFN 642
C S +++ FIL G F Q+ R A+F + V+ Q +RC
Sbjct: 144 CESWPSYDRFILTV-AGPQKFSWTQDSQYNYSTRKNHALFSVGPVTPNQRWIFRCYSYDR 202
Query: 643 QGPFLWSQPSNQVQLQV 693
P+++S PS V+L V
Sbjct: 203 NRPYVFSAPSESVELLV 219
Score = 73.6 bits (179), Expect = 2e-13
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Frame = +1
Query: 130 NGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTV------ 291
+G P + G + P +T+ C + Y + +VG + + +
Sbjct: 418 SGLSKKPSLLTHQGHTLDPGMTLTLQCFSDINYDRYALHKVGRADIMQHSSQQTDTGFSV 477
Query: 292 ---AFPELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMTEAYE-KPSLSSMTGTVVASG 453
+S G Y C ++ + +WS S L +++T PSLS V SG
Sbjct: 478 ANFTLGYVSSSTGGQYRCYGAHNLSSEWSASSEPLDILITGQLPLTPSLSVQPNHTVHSG 537
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E V L C+S + + FIL K + S + +QA F +S V+S +GTYRC G
Sbjct: 538 ETVSLLCWSMDSVDTFILSKEGSAQQPLRLKSKSHDQQSQAEFSMSAVTSHLSGTYRCYG 597
Query: 634 VFNQGPFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQ 756
+ +L S S V+L V E + + P PT+
Sbjct: 598 AQDSSFYLLSSASAPVELTVSETIESSTWSPKRPIPPIPTE 638
Score = 56.6 bits (135), Expect = 3e-08
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 13/195 (6%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPE-------- 303
P ++ LP +V +T+ C + + +T+ + ++
Sbjct: 323 PRLSVLPSPVVTAGGNMTLHCASDFHYDKFILTKEDKKFTSSLDTEHISSSRQYRALFII 382
Query: 304 --LSPDLVGPYHCS--YKIGED-WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKL 468
+P G + C YK WS S L ++++ +KPSL + G + G + L
Sbjct: 383 GPTTPTHTGTFRCYGYYKNAPQLWSVPSALQQILISGLSKKPSLLTHQGHTLDPGMTLTL 442
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
QCFS +N++ + L K + Q S + A F L VSS G YRC G N
Sbjct: 443 QCFSDINYDRYALHKVGRADIMQHSSQQTDTGFSVANFTLGYVSSSTGGQYRCYGAHNLS 502
Query: 649 PFLWSQPSNQVQLQV 693
WS S + + +
Sbjct: 503 S-EWSASSEPLDILI 516
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,941,494
Number of extensions: 1112337
Number of successful extensions: 4345
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4214
Number of HSP's successfully gapped: 98
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077368.1| platelet glycoprotein VI isoform 1 [Homo sap... 130 1e-30
Alignment gi|NP_057447.4| platelet glycoprotein VI isoform 2 [Homo sapien... 130 1e-30
Alignment gi|NP_001074907.1| leukocyte immunoglobulin-like receptor subfa... 127 2e-29
Alignment gi|NP_006838.3| leukocyte immunoglobulin-like receptor subfamil... 127 2e-29
Alignment gi|NP_067073.1| leukocyte immunoglobulin-like receptor subfamil... 122 5e-28
Alignment gi|NP_001074919.1| leukocyte immunoglobulin-like receptor subfa... 122 5e-28
Alignment gi|NP_006855.2| leukocyte immunoglobulin-like receptor subfamil... 122 5e-28
Alignment gi|NP_005865.2| leukocyte immunoglobulin-like receptor subfamil... 118 7e-27
Alignment gi|NP_001074447.1| leukocyte immunoglobulin-like receptor subfa... 118 7e-27
Alignment gi|NP_870994.1| leukocyte immunoglobulin-like receptor subfamil... 118 9e-27
>ref|NP_001077368.1| platelet glycoprotein VI isoform 1 [Homo sapiens].
Length = 620
Score = 130 bits (328), Expect = 1e-30
Identities = 76/207 (36%), Positives = 112/207 (54%)
Frame = +1
Query: 127 QNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPEL 306
Q+G L P + ALP SLVP ++PVT+ C+GP + YR+ ++ S Q++ + P +
Sbjct: 21 QSGPLPKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAV--LFIPAM 78
Query: 307 SPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKV 486
L G Y CSY+ G WS S+ L LV T + KPSLS+ G V+SG +V LQC ++
Sbjct: 79 KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRY 138
Query: 487 NFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQ 666
F+ F L K ++ R +A F + V++ +GTYRC ++ P+LWS
Sbjct: 139 GFDQFALYKEGDPAPYKNPE-----RWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSA 193
Query: 667 PSNQVQLQVKEATDPDATESEHPTARP 747
PS+ ++L V T T S PT P
Sbjct: 194 PSDPLELVV---TGTSVTPSRLPTEPP 217
>ref|NP_057447.4| platelet glycoprotein VI isoform 2 [Homo sapiens].
Length = 339
Score = 130 bits (328), Expect = 1e-30
Identities = 76/207 (36%), Positives = 112/207 (54%)
Frame = +1
Query: 127 QNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQEREANTVAFPEL 306
Q+G L P + ALP SLVP ++PVT+ C+GP + YR+ ++ S Q++ + P +
Sbjct: 21 QSGPLPKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAV--LFIPAM 78
Query: 307 SPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTGTVVASGENVKLQCFSKV 486
L G Y CSY+ G WS S+ L LV T + KPSLS+ G V+SG +V LQC ++
Sbjct: 79 KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRY 138
Query: 487 NFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQGPFLWSQ 666
F+ F L K ++ R +A F + V++ +GTYRC ++ P+LWS
Sbjct: 139 GFDQFALYKEGDPAPYKNPE-----RWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSA 193
Query: 667 PSNQVQLQVKEATDPDATESEHPTARP 747
PS+ ++L V T T S PT P
Sbjct: 194 PSDPLELVV---TGTSVTPSRLPTEPP 217
>ref|NP_001074907.1| leukocyte immunoglobulin-like receptor subfamily B member 4 isoform
2 [Homo sapiens].
Length = 447
Score = 127 bits (318), Expect = 2e-29
Identities = 83/230 (36%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T Q G L P + A PGS++ VTI C+G +A YR+ + SP P +R
Sbjct: 12 GLSLGPRTHMQAGPLPKPTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDR 71
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
+ N F P ++ D G Y C Y+ WS S+ L LVMT AY KP+LS++
Sbjct: 72 QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAG 615
+V SG++V L C S+ + F+LIK +H S + QA F +S V+SV G
Sbjct: 132 PLVTSGKSVTLLCQSRSPMDTFLLIKERAAHPLLHLRSEHGAQQHQAEFPMSPVTSVHGG 191
Query: 616 TYRCCGVFNQGPFLWSQPSNQVQLQVK---EATDPDATESEHPTARPPTQ 756
TYRC +L S PS+ ++L V E P T S A P Q
Sbjct: 192 TYRCFSSHGFSHYLLSHPSDPLELIVSGSLEDPRPSPTRSVSTAAGPEDQ 241
>ref|NP_006838.3| leukocyte immunoglobulin-like receptor subfamily B member 4 isoform
1 [Homo sapiens].
Length = 448
Score = 127 bits (318), Expect = 2e-29
Identities = 83/230 (36%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T Q G L P + A PGS++ VTI C+G +A YR+ + SP P +R
Sbjct: 12 GLSLGPRTHMQAGPLPKPTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDR 71
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
+ N F P ++ D G Y C Y+ WS S+ L LVMT AY KP+LS++
Sbjct: 72 QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAG 615
+V SG++V L C S+ + F+LIK +H S + QA F +S V+SV G
Sbjct: 132 PLVTSGKSVTLLCQSRSPMDTFLLIKERAAHPLLHLRSEHGAQQHQAEFPMSPVTSVHGG 191
Query: 616 TYRCCGVFNQGPFLWSQPSNQVQLQVK---EATDPDATESEHPTARPPTQ 756
TYRC +L S PS+ ++L V E P T S A P Q
Sbjct: 192 TYRCFSSHGFSHYLLSHPSDPLELIVSGSLEDPRPSPTRSVSTAAGPEDQ 241
>ref|NP_067073.1| leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1 [Homo sapiens].
Length = 299
Score = 122 bits (306), Expect = 5e-28
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T Q GNLS + A PGS++ VTI C+G +A+ YR+ + GSPEP +
Sbjct: 30 GLSLGPRTHVQAGNLSKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDT 89
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
+ N F P ++ G Y C Y WS S+ L LV+T Y KP+LS++
Sbjct: 90 QNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS 149
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ---EQSSTPQGRGAQAIFLLSQVSSV 606
VV SGENV LQC S++ F+ FIL + G H + TP G+ QA+F + V+
Sbjct: 150 PVVTSGENVTLQCGSRLRFDRFILTE-EGDHKLSWTLDSQLTPSGQ-FQALFPVGPVTPS 207
Query: 607 QAGTYRCCGVFNQGPFLWSQPSNQVQLQVKEATD---PDATESEHPTA 741
RC G +WS+PS+ +++ V A D P +S+ TA
Sbjct: 208 HRWMLRCYGSRRHILQVWSEPSDLLEIPVSGAADNLSPSQNKSDSGTA 255
>ref|NP_001074919.1| leukocyte immunoglobulin-like receptor subfamily B member 3 isoform
1 [Homo sapiens].
Length = 632
Score = 122 bits (306), Expect = 5e-28
Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 9/206 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T+ Q G P + A PGS++ PVTI C+G ++A+ YR+ + GSPEP +R
Sbjct: 12 GLSLGPRTRVQAGPFPKPTLWAEPGSVISWGSPVTIWCQGSQEAQEYRLHKEGSPEPLDR 71
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
N F P ++ G Y C Y WS S+ L +VMT AY KP+LS++
Sbjct: 72 NNPLEPKNKARFSIPSMTEHHAGRYRCHYYSSAGWSEPSDPLEMVMTGAYSKPTLSALPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQ--GRGAQAIFLLSQVSSVQ 609
VVASG N+ L+C S+ + F+L+K G H + Q RG QA+F + V+
Sbjct: 132 PVVASGGNMTLRCGSQKGYHHFVLMK-EGEHQLPRTLDSQQLHSRGFQALFPVGPVTPSH 190
Query: 610 AGTYRCCGVFNQGPFLWSQPSNQVQL 687
+ C + P++WS PS+ +++
Sbjct: 191 RWRFTCYYYYTNTPWVWSHPSDPLEI 216
Score = 102 bits (254), Expect = 5e-22
Identities = 84/283 (29%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGP---------KQAEAYRITRVGS-PEPQEREANTVAF 297
P + L G ++ P Q +T+ C K+ E + R G P+ +AN
Sbjct: 225 PSLLTLQGPVLAPGQSLTLQCGSDVGYNRFVLYKEGERDFLQRPGQQPQAGLSQANFTLG 284
Query: 298 PELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMT-EAYEKPSLSSMTGTVVASGENVKL 468
P +SP G Y C ++ + +WS S+ L ++M + Y+ SLS+ G VASGENV L
Sbjct: 285 P-VSPSNGGQYRCYGAHNLSSEWSAPSDPLNILMAGQIYDTVSLSAQPGPTVASGENVTL 343
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S F+ F+L K +H S QA F +S V+S AGTYRC G ++
Sbjct: 344 LCQSWWQFDTFLLTKEGAAHPPLRLRSMYGAHKYQAEFPMSPVTSAHAGTYRCYGSYSSN 403
Query: 649 PFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGXXXXXX 828
P L S PS ++L V + S P PP+ + L +LIG VA
Sbjct: 404 PHLLSHPSEPLELVV----SGHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFLL 459
Query: 829 XXXXXXXRKARNNAASKERRPEAAGPXGGTGL*STRPAGKSLL 957
++ + S +R+ + P G T P + LL
Sbjct: 460 LFLLLRRQRHSKHRTSDQRKTDFQRPAGAA---ETEPKDRGLL 499
Score = 75.1 bits (183), Expect = 9e-14
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP----QEREANTVAFP 300
G S P ++ALP +V +T+ C K + + + G + ++ ++ F
Sbjct: 119 GAYSKPTLSALPSPVVASGGNMTLRCGSQKGYHHFVLMKEGEHQLPRTLDSQQLHSRGFQ 178
Query: 301 ELSPDLVGP--------YHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVA 447
L P VGP + C Y WS S+ L ++ + KPSL ++ G V+A
Sbjct: 179 ALFP--VGPVTPSHRWRFTCYYYYTNTPWVWSHPSDPLEILPSGVSRKPSLLTLQGPVLA 236
Query: 448 SGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRC 627
G+++ LQC S V + F+L K Q PQ +QA F L VS G YRC
Sbjct: 237 PGQSLTLQCGSDVGYNRFVLYKEGERDFLQRPGQQPQAGLSQANFTLGPVSPSNGGQYRC 296
Query: 628 CGVFNQGPFLWSQPSNQVQL 687
G N WS PS+ + +
Sbjct: 297 YGAHNLSS-EWSAPSDPLNI 315
>ref|NP_006855.2| leukocyte immunoglobulin-like receptor subfamily B member 3 isoform
2 [Homo sapiens].
Length = 631
Score = 122 bits (306), Expect = 5e-28
Identities = 72/206 (34%), Positives = 108/206 (52%), Gaps = 9/206 (4%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T+ Q G P + A PGS++ PVTI C+G ++A+ YR+ + GSPEP +R
Sbjct: 12 GLSLGPRTRVQAGPFPKPTLWAEPGSVISWGSPVTIWCQGSQEAQEYRLHKEGSPEPLDR 71
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
N F P ++ G Y C Y WS S+ L +VMT AY KP+LS++
Sbjct: 72 NNPLEPKNKARFSIPSMTEHHAGRYRCHYYSSAGWSEPSDPLEMVMTGAYSKPTLSALPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQ--GRGAQAIFLLSQVSSVQ 609
VVASG N+ L+C S+ + F+L+K G H + Q RG QA+F + V+
Sbjct: 132 PVVASGGNMTLRCGSQKGYHHFVLMK-EGEHQLPRTLDSQQLHSRGFQALFPVGPVTPSH 190
Query: 610 AGTYRCCGVFNQGPFLWSQPSNQVQL 687
+ C + P++WS PS+ +++
Sbjct: 191 RWRFTCYYYYTNTPWVWSHPSDPLEI 216
Score = 102 bits (254), Expect = 5e-22
Identities = 84/283 (29%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGP---------KQAEAYRITRVGS-PEPQEREANTVAF 297
P + L G ++ P Q +T+ C K+ E + R G P+ +AN
Sbjct: 225 PSLLTLQGPVLAPGQSLTLQCGSDVGYNRFVLYKEGERDFLQRPGQQPQAGLSQANFTLG 284
Query: 298 PELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMT-EAYEKPSLSSMTGTVVASGENVKL 468
P +SP G Y C ++ + +WS S+ L ++M + Y+ SLS+ G VASGENV L
Sbjct: 285 P-VSPSNGGQYRCYGAHNLSSEWSAPSDPLNILMAGQIYDTVSLSAQPGPTVASGENVTL 343
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S F+ F+L K +H S QA F +S V+S AGTYRC G ++
Sbjct: 344 LCQSWWQFDTFLLTKEGAAHPPLRLRSMYGAHKYQAEFPMSPVTSAHAGTYRCYGSYSSN 403
Query: 649 PFLWSQPSNQVQLQVKEATDPDATESEHPTARPPTQTSKEKRLGLLIGAPVASGXXXXXX 828
P L S PS ++L V + S P PP+ + L +LIG VA
Sbjct: 404 PHLLSHPSEPLELVV----SGHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFLL 459
Query: 829 XXXXXXXRKARNNAASKERRPEAAGPXGGTGL*STRPAGKSLL 957
++ + S +R+ + P G T P + LL
Sbjct: 460 LFLLLRRQRHSKHRTSDQRKTDFQRPAGAA---ETEPKDRGLL 499
Score = 75.1 bits (183), Expect = 9e-14
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEP----QEREANTVAFP 300
G S P ++ALP +V +T+ C K + + + G + ++ ++ F
Sbjct: 119 GAYSKPTLSALPSPVVASGGNMTLRCGSQKGYHHFVLMKEGEHQLPRTLDSQQLHSRGFQ 178
Query: 301 ELSPDLVGP--------YHCSYKIGED---WSPLSNLLYLVMTEAYEKPSLSSMTGTVVA 447
L P VGP + C Y WS S+ L ++ + KPSL ++ G V+A
Sbjct: 179 ALFP--VGPVTPSHRWRFTCYYYYTNTPWVWSHPSDPLEILPSGVSRKPSLLTLQGPVLA 236
Query: 448 SGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRC 627
G+++ LQC S V + F+L K Q PQ +QA F L VS G YRC
Sbjct: 237 PGQSLTLQCGSDVGYNRFVLYKEGERDFLQRPGQQPQAGLSQANFTLGPVSPSNGGQYRC 296
Query: 628 CGVFNQGPFLWSQPSNQVQL 687
G N WS PS+ + +
Sbjct: 297 YGAHNLSS-EWSAPSDPLNI 315
>ref|NP_005865.2| leukocyte immunoglobulin-like receptor subfamily B member 2 isoform
1 [Homo sapiens].
Length = 598
Score = 118 bits (296), Expect = 7e-27
Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 8/207 (3%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITR-------VG 255
G G T Q G + P + A P S++ PVT+ C+G +A+ YR+ R +
Sbjct: 12 GLSLGPRTHVQTGTIPKPTLWAEPDSVITQGSPVTLSCQGSLEAQEYRLYREKKSASWIT 71
Query: 256 SPEPQEREANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
P+ + P ++ + G Y C Y WS LS+ L LVMT AY KP+LS+
Sbjct: 72 RIRPELVKNGQFHIPSITWEHTGRYGCQYYSRARWSELSDPLVLVMTGAYPKPTLSAQPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRG-AQAIFLLSQVSSVQA 612
VV SG V LQC S+V F FIL K Q +S P RG ++AIF + VS +
Sbjct: 132 PVVTSGGRVTLQCESQVAFGGFILCKEGEEEHPQCLNSQPHARGSSRAIFSVGPVSPNRR 191
Query: 613 GTYRCCGVFNQGPFLWSQPSNQVQLQV 693
++RC G P++WS PS+ ++L V
Sbjct: 192 WSHRCYGYDLNSPYVWSSPSDLLELLV 218
Score = 81.3 bits (199), Expect = 1e-15
Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 29/287 (10%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS----------PEPQEREANTVAF 297
P ++ PG +V P + +T+ C + + + + G P+ +AN
Sbjct: 225 PSLSVQPGPVVAPGESLTLQCVSDVGYDRFVLYKEGERDLRQLPGRQPQAGLSQANFTLG 284
Query: 298 PELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMT-EAYEKPSLSSMTGTVVASGENVKL 468
P +S G Y C ++ + + S S+ L +++T + P +S G VASGENV L
Sbjct: 285 P-VSRSYGGQYRCYGAHNLSSECSAPSDPLDILITGQIRGTPFISVQPGPTVASGENVTL 343
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S F F+L K + S + QA F +S V+S AGTYRC G N
Sbjct: 344 LCQSWRQFHTFLLTKAGAADAPLRLRSIHEYPKYQAEFPMSPVTSAHAGTYRCYGSLNSD 403
Query: 649 PFLWSQPSNQVQLQVK--------EATDPDATESEHPTARPPTQTSKE------KRLGLL 786
P+L S PS ++L V T P +T + P +P T T + + LG++
Sbjct: 404 PYLLSHPSEPLELVVSGPSMGSSPPPTGPISTPA-GPEDQPLTPTGSDPQSGLGRHLGVV 462
Query: 787 IGAPVASGXXXXXXXXXXXXXRKARNNA--ASKERRPEAAGPXGGTG 921
IG VA R R S +R+ + P G G
Sbjct: 463 IGILVAVVLLLLLLLLLFLILRHRRQGKHWTSTQRKADFQHPAGAVG 509
Score = 75.5 bits (184), Expect = 7e-14
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE--------PQEREANT 288
G P ++A P +V VT+ C + + + G E P R ++
Sbjct: 119 GAYPKPTLSAQPSPVVTSGGRVTLQCESQVAFGGFILCKEGEEEHPQCLNSQPHARGSSR 178
Query: 289 VAFP--ELSPDLVGPYHC-SYKIGED--WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
F +SP+ + C Y + WS S+LL L++ +KPSLS G VVA G
Sbjct: 179 AIFSVGPVSPNRRWSHRCYGYDLNSPYVWSSPSDLLELLVPGVSKKPSLSVQPGPVVAPG 238
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E++ LQC S V ++ F+L K Q PQ +QA F L VS G YRC G
Sbjct: 239 ESLTLQCVSDVGYDRFVLYKEGERDLRQLPGRQPQAGLSQANFTLGPVSRSYGGQYRCYG 298
Query: 634 VFN 642
N
Sbjct: 299 AHN 301
>ref|NP_001074447.1| leukocyte immunoglobulin-like receptor subfamily B member 2 isoform
2 [Homo sapiens].
Length = 597
Score = 118 bits (296), Expect = 7e-27
Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 8/207 (3%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITR-------VG 255
G G T Q G + P + A P S++ PVT+ C+G +A+ YR+ R +
Sbjct: 12 GLSLGPRTHVQTGTIPKPTLWAEPDSVITQGSPVTLSCQGSLEAQEYRLYREKKSASWIT 71
Query: 256 SPEPQEREANTVAFPELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
P+ + P ++ + G Y C Y WS LS+ L LVMT AY KP+LS+
Sbjct: 72 RIRPELVKNGQFHIPSITWEHTGRYGCQYYSRARWSELSDPLVLVMTGAYPKPTLSAQPS 131
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRG-AQAIFLLSQVSSVQA 612
VV SG V LQC S+V F FIL K Q +S P RG ++AIF + VS +
Sbjct: 132 PVVTSGGRVTLQCESQVAFGGFILCKEGEEEHPQCLNSQPHARGSSRAIFSVGPVSPNRR 191
Query: 613 GTYRCCGVFNQGPFLWSQPSNQVQLQV 693
++RC G P++WS PS+ ++L V
Sbjct: 192 WSHRCYGYDLNSPYVWSSPSDLLELLV 218
Score = 82.0 bits (201), Expect = 7e-16
Identities = 78/285 (27%), Positives = 117/285 (41%), Gaps = 27/285 (9%)
Frame = +1
Query: 148 PLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGS----------PEPQEREANTVAF 297
P ++ PG +V P + +T+ C + + + + G P+ +AN
Sbjct: 225 PSLSVQPGPVVAPGESLTLQCVSDVGYDRFVLYKEGERDLRQLPGRQPQAGLSQANFTLG 284
Query: 298 PELSPDLVGPYHC--SYKIGEDWSPLSNLLYLVMT-EAYEKPSLSSMTGTVVASGENVKL 468
P +S G Y C ++ + + S S+ L +++T + P +S G VASGENV L
Sbjct: 285 P-VSRSYGGQYRCYGAHNLSSECSAPSDPLDILITGQIRGTPFISVQPGPTVASGENVTL 343
Query: 469 QCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCGVFNQG 648
C S F F+L K + S + QA F +S V+S AGTYRC G N
Sbjct: 344 LCQSWRQFHTFLLTKAGAADAPLRLRSIHEYPKYQAEFPMSPVTSAHAGTYRCYGSLNSD 403
Query: 649 PFLWSQPSNQVQLQVK--------EATDPDATESEHPTARPPT----QTSKEKRLGLLIG 792
P+L S PS ++L V T P +T PT Q+ + LG++IG
Sbjct: 404 PYLLSHPSEPLELVVSGPSMGSSPPPTGPISTPGPEDQPLTPTGSDPQSGLGRHLGVVIG 463
Query: 793 APVASGXXXXXXXXXXXXXRKARNNA--ASKERRPEAAGPXGGTG 921
VA R R S +R+ + P G G
Sbjct: 464 ILVAVVLLLLLLLLLFLILRHRRQGKHWTSTQRKADFQHPAGAVG 508
Score = 75.5 bits (184), Expect = 7e-14
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Frame = +1
Query: 133 GNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPE--------PQEREANT 288
G P ++A P +V VT+ C + + + G E P R ++
Sbjct: 119 GAYPKPTLSAQPSPVVTSGGRVTLQCESQVAFGGFILCKEGEEEHPQCLNSQPHARGSSR 178
Query: 289 VAFP--ELSPDLVGPYHC-SYKIGED--WSPLSNLLYLVMTEAYEKPSLSSMTGTVVASG 453
F +SP+ + C Y + WS S+LL L++ +KPSLS G VVA G
Sbjct: 179 AIFSVGPVSPNRRWSHRCYGYDLNSPYVWSSPSDLLELLVPGVSKKPSLSVQPGPVVAPG 238
Query: 454 ENVKLQCFSKVNFEAFILIKNNGSHTFQEQSSTPQGRGAQAIFLLSQVSSVQAGTYRCCG 633
E++ LQC S V ++ F+L K Q PQ +QA F L VS G YRC G
Sbjct: 239 ESLTLQCVSDVGYDRFVLYKEGERDLRQLPGRQPQAGLSQANFTLGPVSRSYGGQYRCYG 298
Query: 634 VFN 642
N
Sbjct: 299 AHN 301
>ref|NP_870994.1| leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
3 [Homo sapiens].
Length = 265
Score = 118 bits (295), Expect = 9e-27
Identities = 79/215 (36%), Positives = 112/215 (52%), Gaps = 12/215 (5%)
Frame = +1
Query: 97 GFYPGQNTQEQNGNLSPPLITALPGSLVPPKQPVTILCRGPKQAEAYRITRVGSPEPQER 276
G G T Q GNLS + A PGS++ VTI C+G +A+ YR+ + GSPEP +
Sbjct: 30 GLSLGPRTHVQAGNLSKATLWAEPGSVISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDT 89
Query: 277 E-----ANTVAF--PELSPDLVGPYHCSYKIGEDWSPLSNLLYLVMTEAYEKPSLSSMTG 435
+ N F P ++ G Y C Y WS S+ L LV+T Y KP+LS++
Sbjct: 90 QNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS 149
Query: 436 TVVASGENVKLQCFSKVNFEAFILIKNNGSHTFQ---EQSSTPQGRGAQAIFLLSQVSSV 606
VV SGENV LQC S++ F+ FIL + G H + TP G+ QA+F + V+
Sbjct: 150 PVVTSGENVTLQCGSRLRFDRFILTE-EGDHKLSWTLDSQLTPSGQ-FQALFPVGPVTPS 207
Query: 607 QAGTYRCCGVFNQGPFLWSQPSNQVQLQV--KEAT 705
RC G +WS+PS+ +++ V +EAT
Sbjct: 208 HRWMLRCYGSRRHILQVWSEPSDLLEIPVSGEEAT 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,832,116
Number of extensions: 1343188
Number of successful extensions: 5502
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 5157
Number of HSP's successfully gapped: 177
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014407
(979 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 585 e-164
>Sscrofa_Chr06
|| Length = 157765593
Score = 585 bits (295), Expect = e-164
Identities = 301/303 (99%)
Strand = Plus / Plus
Query: 395 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139585 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 54139644
Query: 455 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139645 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 54139704
Query: 515 acaatggaagtcacaccttccaggaacaaagctccaccccccagggcagaggagcccagg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139705 acaatggaagtcacaccttccaggaacaaagctccaccccccagggcagaggagcccagg 54139764
Query: 575 ccatcttcctcttgagtcaagtctcctctgtgcaggcagggacctacagatgctgtggtg 634
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 54139765 ccatcttcctcttgagtcaagtctcctctgcacaggcagggacctacagatgctgtggtg 54139824
Query: 635 tcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttcaggtca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139825 tcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttcaggtca 54139884
Query: 695 aag 697
|||
Sbjct: 54139885 aag 54139887
Score = 577 bits (291), Expect = e-162
Identities = 300/303 (99%)
Strand = Plus / Plus
Query: 395 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53769059 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 53769118
Query: 455 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53769119 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 53769178
Query: 515 acaatggaagtcacaccttccaggaacaaagctccaccccccagggcagaggagcccagg 574
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 53769179 acaatggaagtcacaccttccaggaacaaagctccaccccccaggacagaggagcccagg 53769238
Query: 575 ccatcttcctcttgagtcaagtctcctctgtgcaggcagggacctacagatgctgtggtg 634
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 53769239 ctatcttcctcttgagtcacgtctcctctgtgcaggcagggacctacagatgctgtggtg 53769298
Query: 635 tcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttcaggtca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53769299 tcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttcaggtca 53769358
Query: 695 aag 697
|||
Sbjct: 53769359 aag 53769361
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 133 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139075 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 54139134
Query: 193 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139135 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 54139194
Query: 253 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139195 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 54139254
Query: 313 gaccttgtgggcccgtaccactgctcctacaagattggagaggactggtccccgctcagc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54139255 gaccttgtgggcccgtaccactgctcctacaagattggagaggactggtccccgctcagc 54139314
Query: 373 aacctcctgtatctggtgatgacag 397
|||||||||||||||||||||||||
Sbjct: 54139315 aacctcctgtatctggtgatgacag 54139339
Score = 521 bits (263), Expect = e-145
Identities = 293/303 (96%)
Strand = Plus / Plus
Query: 395 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53764100 cagaagcttatgagaaaccctctctctcgagcatgactggcactgtggtggcttcggggg 53764159
Query: 455 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53764160 agaatgtgaaattgcagtgtttctccaaagtaaactttgaagcatttattctcatcaaaa 53764219
Query: 515 acaatggaagtcacaccttccaggaacaaagctccaccccccagggcagaggagcccagg 574
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 53764220 acaatggaagtcacaccttccaggaacaaagctccaccccccaggacagaggagcccagg 53764279
Query: 575 ccatcttcctcttgagtcaagtctcctctgtgcaggcagggacctacagatgctgtggtg 634
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 53764280 ccatcttcctcttgagtcaagtctcctctgcacaggcagggacctacagatgctatggtg 53764339
Query: 635 tcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttcaggtca 694
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 53764340 tcttcaacaaaggcccccatgtgtggtctcagcccagcaaccaagtgtagcttcaggtca 53764399
Query: 695 aag 697
|||
Sbjct: 53764400 aag 53764402
Score = 517 bits (261), Expect = e-144
Identities = 264/265 (99%)
Strand = Plus / Plus
Query: 133 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53768550 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 53768609
Query: 193 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53768610 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 53768669
Query: 253 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53768670 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 53768729
Query: 313 gaccttgtgggcccgtaccactgctcctacaagattggagaggactggtccccgctcagc 372
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 53768730 gaccttgtgggcccgtaccactgttcctacaagattggagaggactggtccccgctcagc 53768789
Query: 373 aacctcctgtatctggtgatgacag 397
|||||||||||||||||||||||||
Sbjct: 53768790 aacctcctgtatctggtgatgacag 53768814
Score = 509 bits (257), Expect = e-142
Identities = 263/265 (99%)
Strand = Plus / Plus
Query: 133 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53763591 ggaaatctctctccaccgcttatcacagctctgcctggatccttggttccaccaaaacag 53763650
Query: 193 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53763651 cctgtgaccatcctgtgccgagggcccaaacaagctgaagcgtacaggataaccagagtg 53763710
Query: 253 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53763711 ggaagtcctgagccccaggaaagagaggccaacacggtggctttcccagagctaagccca 53763770
Query: 313 gaccttgtgggcccgtaccactgctcctacaagattggagaggactggtccccgctcagc 372
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 53763771 gaccttgtgggcccgtaccactgttcctacaagattggagaggactggtccccactcagc 53763830
Query: 373 aacctcctgtatctggtgatgacag 397
|||||||||||||||||||||||||
Sbjct: 53763831 aacctcctgtatctggtgatgacag 53763855
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 739 gccaggcctcccacccaaacctccaaggagaaacgcctaggccttctgattggtgcccca 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53771684 gccaggcctcccacccaaacctccaaggagaaacgcctaggccttctgattggtgcccca 53771743
Query: 799 gtggcctctggtctcctgctcctcgtcttgctcctcctcgtgtgctgttgtcgcaaagcc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53771744 gtggcctctggtctcctgctcctcgtcttgctcctcctcgtgtgctgttgtcgcaaagcc 53771803
Query: 859 agaaaca 865
|||||||
Sbjct: 53771804 agaaaca 53771810
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 739 gccaggcctcccacccaaacctccaaggagaaacgcctaggccttctgattggtgcccca 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54142209 gccaggcctcccacccaaacctccaaggagaaacgcctaggccttctgattggtgcccca 54142268
Query: 799 gtggcctctggtctcctgctcctcgtcttgctcctcctcgtgtgctgttgtcgcaaagcc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54142269 gtggcctctggtctcctgctcctcgtcttgctcctcctcgtgtgctgttgtcgcaaagcc 54142328
Query: 859 agaaaca 865
|||||||
Sbjct: 54142329 agaaaca 54142335
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53763179 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 53763238
Query: 61 atcatgtccctgcttctgcccatgctgctcttcctcgg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 53763239 atcatgtccctgcttctgcccatgctgctcttcctcgg 53763276
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53768138 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 53768197
Query: 61 atcatgtccctgcttctgcccatgctgctcttcctcgg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 53768198 atcatgtccctgcttctgcccatgctgctcttcctcgg 53768235
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54138663 gtcacttccggagaagcctgctcagcatcacggagcccagcaggacggcctggacccagg 54138722
Query: 61 atcatgtccctgcttctgcccatgctgctcttcctcgg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 54138723 atcatgtccctgcttctgcccatgctgctcttcctcgg 54138760
Score = 184 bits (93), Expect = 6e-44
Identities = 120/129 (93%)
Strand = Plus / Plus
Query: 569 cccaggccatcttcctcttgagtcaagtctcctctgtgcaggcagggacctacagatgct 628
||||| ||||||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct: 53767485 cccagcccatcttcctctttaatcaagtctcctccgcacaggcagggacctacagatgct 53767544
Query: 629 gtggtgtcttcaaccaaggccccttcctgtggtctcagcccagcaaccaagtgcagcttc 688
| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 53767545 gcggtgtcttcaaccaaggcccctacgtgtggtctcagcccagcaaccaagtgcagcttc 53767604
Query: 689 aggtcaaag 697
|||||||||
Sbjct: 53767605 aggtcaaag 53767613
Score = 93.7 bits (47), Expect = 2e-16
Identities = 54/55 (98%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 866 atgctgccagcaaagagaggcggccagaggcggctggacccancggagggacagg 920
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 53773385 atgctgccagcaaagagaggcggccagaggcggctggaccca-cggagggacagg 53773438
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 696 agaagctactgatcctgatgccacagagtccgaacatccaactg 739
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53769581 agaagctactgatcctgatgccacagagtccgaacatccaactg 53769624
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 696 agaagctactgatcctgatgccacagagtccgaacatccaactg 739
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54140107 agaagctactgatcctgatgccacagagtccgaacatccaactg 54140150
Score = 79.8 bits (40), Expect = 3e-12
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 917 caggcctctgaagcaccagacccgcaggaaagtca-ctactggcagctgaactgcagtgt 975
|||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||
Sbjct: 53773529 caggcctctgaagcaccagacccgcagg-aagtcacctactgccagctgacctgcagtgt 53773587
Query: 976 cccc 979
||||
Sbjct: 53773588 cccc 53773591
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 97 gggttttatccaggccagaacacgcaggaacagaacgg 134
||||||||||||||||||||||||||||||||||||||
Sbjct: 53763374 gggttttatccaggccagaacacgcaggaacagaacgg 53763411
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 97 gggttttatccaggccagaacacgcaggaacagaacgg 134
||||||||||||||||||||||||||||||||||||||
Sbjct: 53768333 gggttttatccaggccagaacacgcaggaacagaacgg 53768370
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 97 gggttttatccaggccagaacacgcaggaacagaacgg 134
||||||||||||||||||||||||||||||||||||||
Sbjct: 54138858 gggttttatccaggccagaacacgcaggaacagaacgg 54138895
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,516,792
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 19
Length of query: 979
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 958
Effective length of database: 2,808,413,156
Effective search space: 2690459803448
Effective search space used: 2690459803448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)