Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539961.2| PREDICTED: similar to indoleamine 2,3-dioxygena... 546 e-156
Alignment gi|XP_532793.1| PREDICTED: similar to Indoleamine 2,3-dioxygena... 277 1e-74
>ref|XP_539961.2| PREDICTED: similar to indoleamine 2,3-dioxygenase [Canis familiaris].
Length = 423
Score = 546 bits (1408), Expect = e-156
Identities = 271/329 (82%), Positives = 295/329 (89%)
Frame = +1
Query: 58 SSSPGVDTSDKIMEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWMEIAS 237
+S VDTS+KIMEP SQNLKTTP L+L RFHISE+YGFLLPNPLKELPD +RPWMEIA+
Sbjct: 5 NSDFSVDTSNKIMEPPSQNLKTTPLLSLRRFHISEDYGFLLPNPLKELPDQFRPWMEIAN 64
Query: 238 KLPHLIDTHQLRAQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKEVLP 417
+LPHLI++ QL+A+VNKMPLL+CQ L Y+EQ LAHL+LSFITMGYVWQEG+TQPKEVLP
Sbjct: 65 ELPHLIESRQLQARVNKMPLLSCQGLKSYREQRLAHLVLSFITMGYVWQEGQTQPKEVLP 124
Query: 418 RNLALPFVEVSRNLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIRGFI 597
RNLALPFVEVSRNLGLPPIL HADLVL NW RNPE+ LEIRNLD IVS PGGES+RGFI
Sbjct: 125 RNLALPFVEVSRNLGLPPILAHADLVLTNWTTRNPERSLEIRNLDIIVSLPGGESLRGFI 184
Query: 598 LVTVLVEKAAVPGIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYVDPD 777
LVTVLVEKAAVPGI ALVQAVNA+L+ + LL+ALQ+L LSIQDITR LGQMH+YVDPD
Sbjct: 185 LVTVLVEKAAVPGIMALVQAVNAILQHRDNSLLRALQQLRLSIQDITRTLGQMHNYVDPD 244
Query: 778 IFYAVIRIFLSGWKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRHSKE 957
IFYAVIRIFLSGWKDNPAMP GL YEGVS EPL YSGGSAAQSTVLHAFDEFLGI HSKE
Sbjct: 245 IFYAVIRIFLSGWKDNPAMPVGLTYEGVSTEPLKYSGGSAAQSTVLHAFDEFLGICHSKE 304
Query: 958 SADFLHRMRDYMPPSHKAFHREIHLAPSL 1044
SADFLHRMR+YMPPSHKAF EIH APSL
Sbjct: 305 SADFLHRMREYMPPSHKAFIEEIHSAPSL 333
>ref|XP_532793.1| PREDICTED: similar to Indoleamine 2,3-dioxygenase (IDO)
(Indoleamine-pyrrole 2,3-dioxygenase) [Canis familiaris].
Length = 407
Score = 277 bits (708), Expect = 1e-74
Identities = 138/320 (43%), Positives = 201/320 (62%), Gaps = 3/320 (0%)
Frame = +1
Query: 94 MEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLR 273
ME L +P E++HI EE GF LPNPL++LP Y W+ IA LP LI ++LR
Sbjct: 1 MEDDGILLMESPQRIFEKYHIDEEMGFALPNPLEKLPPPYDEWISIAKNLPELIKKNELR 60
Query: 274 AQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSR 453
+V+++ +L+ L+G+K Q LA L L +ITM YVW +G+ ++VLP+N+A+P+ E+S
Sbjct: 61 KKVDELKILSIDGLSGHKLQRLARLALGYITMAYVWNQGDGDVRKVLPQNIAIPYCELSE 120
Query: 454 NLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVP 633
LGLPPILV+AD VLANW ++P P+ N+D + FPGG+ +GF LV++LVE AA
Sbjct: 121 KLGLPPILVYADCVLANWKKKDPNGPMTYENMDILFWFPGGDCSKGFFLVSLLVELAAAS 180
Query: 634 GIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSG 813
IK + + A+ L +AL + + + ++H +VDP F+ V+RI+LSG
Sbjct: 181 AIKVIPNLLKAVKNQDEVTLKKALHYIASCLHRAHKEFEEVHKHVDPSTFFKVLRIYLSG 240
Query: 814 WKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRH---SKESADFLHRMR 984
WK N +P GL YEG E P ++GGSAAQS++ FD LGI+ + +A+FL MR
Sbjct: 241 WKGNSKLPEGLKYEGFWENPKEFAGGSAAQSSIFQCFDILLGIQQCSGEEFAAEFLQEMR 300
Query: 985 DYMPPSHKAFHREIHLAPSL 1044
+YMPP+H+ F + PS+
Sbjct: 301 NYMPPAHRDFLLLLKSGPSV 320
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,238,059
Number of extensions: 1638232
Number of successful extensions: 6212
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6195
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014426
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095336.1| indoleamine 2,3-dioxygenase 1 [Bos taurus]. 284 8e-77
>ref|NP_001095336.1| indoleamine 2,3-dioxygenase 1 [Bos taurus].
Length = 406
Score = 284 bits (727), Expect = 8e-77
Identities = 137/307 (44%), Positives = 199/307 (64%), Gaps = 6/307 (1%)
Frame = +1
Query: 142 ERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQFLTG 321
+ +HI E+ GF LP PL++LP Y W+ IA LP LI +QLR +V K+ LN L G
Sbjct: 17 KEYHIDEDVGFALPYPLEDLPHPYDAWISIARNLPELIKNNQLRVEVEKLATLNINGLRG 76
Query: 322 YKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHADLVLA 501
++ Q LAHL+L +ITM YVW +G+ ++VLP N+A+P+ ++S LGLPPIL++AD VLA
Sbjct: 77 HRAQRLAHLVLGYITMAYVWGQGDGDIRKVLPSNIAVPYCKLSEKLGLPPILLYADCVLA 136
Query: 502 NWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNALLKPS 681
NW ++ P+ N+D + SFPGG+ +GF LV++LVE AA IK + +A+ +
Sbjct: 137 NWKKKDLNGPMTYENMDILFSFPGGDCGKGFFLVSLLVEIAAASAIKVIPSIFDAVQRKD 196
Query: 682 PDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLVYEGV 861
D L +AL ++ S+ Q+H YVDP++F+ V+RI+LSGWK NP + GL+YEG+
Sbjct: 197 SDTLQKALLEISSSLHKALEVFSQIHKYVDPNLFFNVLRIYLSGWKGNPLLSEGLLYEGI 256
Query: 862 SEEPLGYSGGSAAQSTVLHAFDEFLGIRHS------KESADFLHRMRDYMPPSHKAFHRE 1023
+ P ++GGSAAQS++ FD LGI+HS +A+FL MR YMPP+H +F
Sbjct: 257 WDTPKKFAGGSAAQSSIFQCFDVLLGIQHSIGGVPADSAAEFLQEMRTYMPPAHHSFLLS 316
Query: 1024 IHLAPSL 1044
+ PS+
Sbjct: 317 LKSKPSV 323
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,130,998
Number of extensions: 1588704
Number of successful extensions: 6431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6390
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134258.2| PREDICTED: indoleamine 2,3-dioxygenase 2-lik... 668 0.0
Alignment gi|XP_003134261.2| PREDICTED: indoleamine 2,3-dioxygenase 1-lik... 296 1e-80
Alignment gi|XP_003134257.2| PREDICTED: indoleamine 2,3-dioxygenase 1-lik... 273 9e-74
>ref|XP_003134258.2| PREDICTED: indoleamine 2,3-dioxygenase 2-like [Sus scrofa].
Length = 505
Score = 668 bits (1723), Expect = 0.0
Identities = 330/332 (99%), Positives = 330/332 (99%)
Frame = +1
Query: 49 CLLSSSPGVDTSDKIMEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWME 228
CLLSSSPGVDTSDKIMEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWME
Sbjct: 84 CLLSSSPGVDTSDKIMEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWME 143
Query: 229 IASKLPHLIDTHQLRAQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKE 408
IASKLPHLIDTHQLRAQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKE
Sbjct: 144 IASKLPHLIDTHQLRAQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKE 203
Query: 409 VLPRNLALPFVEVSRNLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIR 588
VLPRNLALPFVEVSRNLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIR
Sbjct: 204 VLPRNLALPFVEVSRNLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIR 263
Query: 589 GFILVTVLVEKAAVPGIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYV 768
GFILVTVLVEKAAVPGIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYV
Sbjct: 264 GFILVTVLVEKAAVPGIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYV 323
Query: 769 DPDIFYAVIRIFLSGWKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRH 948
DPDIFYAVIRIFLSGWKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRH
Sbjct: 324 DPDIFYAVIRIFLSGWKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRH 383
Query: 949 SKESADFLHRMRDYMPPSHKAFHREIHLAPSL 1044
SKESADFLHRMRDYMPPSHKAF EIHLAPSL
Sbjct: 384 SKESADFLHRMRDYMPPSHKAFIEEIHLAPSL 415
>ref|XP_003134261.2| PREDICTED: indoleamine 2,3-dioxygenase 1-like [Sus scrofa].
Length = 399
Score = 296 bits (759), Expect = 1e-80
Identities = 145/304 (47%), Positives = 200/304 (65%), Gaps = 3/304 (0%)
Frame = +1
Query: 142 ERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQFLTG 321
E +HI E GF LPNPL+ELP Y W+ IA LP LI QLRA+V K+ L+ L G
Sbjct: 9 EEYHIDENLGFALPNPLEELPHPYDAWIAIAKNLPELIKNGQLRAEVEKLATLSIDGLQG 68
Query: 322 YKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHADLVLA 501
+K Q LAHL+L +ITM YVW +G+ ++VLPRN+A+P+ ++S LGLPPILV+AD VLA
Sbjct: 69 HKMQRLAHLVLGYITMAYVWGQGDEDIRKVLPRNIAIPYCKLSGKLGLPPILVYADCVLA 128
Query: 502 NWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNALLKPS 681
NW ++P P+ +N+D + SFPGG+ +GF LV++LVE AA IK + NA+
Sbjct: 129 NWKKKDPSGPMTYKNMDILFSFPGGDCGKGFFLVSLLVEIAAASAIKVIPTLFNAIQCED 188
Query: 682 PDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLVYEGV 861
D L +AL +T S+ Q+H+YVDP +F+ V+RI+LSGWK NP + GL+YEGV
Sbjct: 189 LDALQKALLDITSSLHKALEVFHQIHEYVDPKLFFNVLRIYLSGWKGNPLLSEGLLYEGV 248
Query: 862 SEEPLGYSGGSAAQSTVLHAFDEFLGIRHS---KESADFLHRMRDYMPPSHKAFHREIHL 1032
+ P ++GGSAAQS++ FD LG++H+ +A FL MR YMPP+H+ F +
Sbjct: 249 WDTPKKFAGGSAAQSSIFQCFDVLLGVQHTVGGGSAAGFLQEMRTYMPPAHRNFLHSLES 308
Query: 1033 APSL 1044
PS+
Sbjct: 309 GPSV 312
>ref|XP_003134257.2| PREDICTED: indoleamine 2,3-dioxygenase 1-like [Sus scrofa].
Length = 403
Score = 273 bits (699), Expect = 9e-74
Identities = 140/304 (46%), Positives = 194/304 (63%), Gaps = 6/304 (1%)
Frame = +1
Query: 151 HISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQFLTGYKE 330
H ++ FLL +ELP Y W+ IA LP LI QLRA+V K+ L+ L G+K
Sbjct: 15 HWPKQVLFLLSQ--EELPHPYDAWIAIAKNLPELIKNGQLRAEVEKLATLSIDGLQGHKM 72
Query: 331 QHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHADLVLANWA 510
Q LAHL+L +ITM YVW +G+ ++VLPRN+A+P+ ++S LGLPPILV+AD VLANW
Sbjct: 73 QRLAHLVLGYITMAYVWGQGDEDIRKVLPRNIAIPYCKLSGKLGLPPILVYADCVLANWK 132
Query: 511 ARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNALLKPSPDC 690
++P P+ +N+D + SFPGG+ +GF LV++LVE AA IK + NA+ D
Sbjct: 133 KKDPSGPMTYKNMDILFSFPGGDCGKGFFLVSLLVEIAAASAIKVIPTLFNAIQCEDLDA 192
Query: 691 LLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLVYEGVSEE 870
L +AL +T S+ Q+H+YVDP +F+ V+RI+LSGWK NP + GL+YEGV +
Sbjct: 193 LQKALLDITSSLHKALEVFHQIHEYVDPKLFFNVLRIYLSGWKGNPLLSEGLLYEGVWDT 252
Query: 871 PLGYSGGSAAQSTVLHAFDEFLGIRH------SKESADFLHRMRDYMPPSHKAFHREIHL 1032
P ++GGSAAQS++ FD LGI+H S +A FL MR YMPP+H+ F +
Sbjct: 253 PKKFAGGSAAQSSIFQCFDVLLGIQHTVGGVPSGSAAGFLQEMRTYMPPAHRNFLHSLES 312
Query: 1033 APSL 1044
PS+
Sbjct: 313 GPSV 316
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,049,398
Number of extensions: 1026316
Number of successful extensions: 4080
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4026
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666061.2| indoleamine 2,3-dioxygenase 2 [Mus musculus]. 491 e-139
Alignment gi|NP_032350.1| indoleamine 2,3-dioxygenase 1 [Mus musculus]. 290 1e-78
>ref|NP_666061.2| indoleamine 2,3-dioxygenase 2 [Mus musculus].
Length = 398
Score = 491 bits (1265), Expect = e-139
Identities = 236/305 (77%), Positives = 269/305 (88%)
Frame = +1
Query: 130 PLTLERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQ 309
PL+L R+HISEEYGFLLPNPL+ LPDHY+PWMEIA +LPHLI+ QLRA V +MPLL+C+
Sbjct: 6 PLSLGRYHISEEYGFLLPNPLEALPDHYKPWMEIALRLPHLIENRQLRAHVYRMPLLDCR 65
Query: 310 FLTGYKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHAD 489
FL Y+EQ LAH+ L+ ITMG+VWQEGE QP++VLPR+LA+PFVEVSRNLGLPPILVH+D
Sbjct: 66 FLKSYREQRLAHMALAAITMGFVWQEGEGQPQKVLPRSLAIPFVEVSRNLGLPPILVHSD 125
Query: 490 LVLANWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNAL 669
LVL NW RNPE PLEI NL+ I+SFPGGES+RGFILVTVLVEKAAVPG+KALVQ + A+
Sbjct: 126 LVLTNWTKRNPEGPLEISNLETIISFPGGESLRGFILVTVLVEKAAVPGLKALVQGMEAI 185
Query: 670 LKPSPDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLV 849
+ S D LL+ALQ+L LSIQDITRAL QMHDYVDPDIFY+VIRIFLSGWKDNPAMP GLV
Sbjct: 186 RQHSQDTLLEALQQLRLSIQDITRALAQMHDYVDPDIFYSVIRIFLSGWKDNPAMPVGLV 245
Query: 850 YEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRHSKESADFLHRMRDYMPPSHKAFHREIH 1029
YEGV+ EPL YSGGSAAQS+VLHAFDEFLGI H KES FLHRMRDYMPPSHKAF ++H
Sbjct: 246 YEGVATEPLKYSGGSAAQSSVLHAFDEFLGIEHCKESVGFLHRMRDYMPPSHKAFLEDLH 305
Query: 1030 LAPSL 1044
+APSL
Sbjct: 306 VAPSL 310
>ref|NP_032350.1| indoleamine 2,3-dioxygenase 1 [Mus musculus].
Length = 407
Score = 290 bits (742), Expect = 1e-78
Identities = 146/303 (48%), Positives = 201/303 (66%), Gaps = 3/303 (0%)
Frame = +1
Query: 139 LERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQFLT 318
LE HI E+ GF LP+PL ELPD Y PW+ +A LP LI+ QLR +V K+P L+ L
Sbjct: 16 LEDHHIDEDVGFALPHPLVELPDAYSPWVLVARNLPVLIENGQLREEVEKLPTLSTDGLR 75
Query: 319 GYKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHADLVL 498
G++ Q LAHL L +ITM YVW G+ ++VLPRN+A+P+ E+S LGLPPIL +AD VL
Sbjct: 76 GHRLQRLAHLALGYITMAYVWNRGDDDVRKVLPRNIAVPYCELSEKLGLPPILSYADCVL 135
Query: 499 ANWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNALLKP 678
ANW ++P P+ N+D + SFPGG+ +GF LV++LVE AA P IKA+ +A+ +
Sbjct: 136 ANWKKKDPNGPMTYENMDILFSFPGGDCDKGFFLVSLLVEIAASPAIKAIPTVSSAVERQ 195
Query: 679 SPDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLVYEG 858
L +AL + S++ +M D+VDPD F+ V+RI+LSGWK + +P GL+YEG
Sbjct: 196 DLKALEKALHDIATSLEKAKEIFKRMRDFVDPDTFFHVLRIYLSGWKCSSKLPEGLLYEG 255
Query: 859 VSEEPLGYSGGSAAQSTVLHAFDEFLGIRH--SKES-ADFLHRMRDYMPPSHKAFHREIH 1029
V + P +SGGSA QS++ + D LGI+H KES A+FL MR+YMPP+H+ F +
Sbjct: 256 VWDTPKMFSGGSAGQSSIFQSLDVLLGIKHEAGKESPAEFLQEMREYMPPAHRNFLFFLE 315
Query: 1030 LAP 1038
AP
Sbjct: 316 SAP 318
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,677,844
Number of extensions: 1339349
Number of successful extensions: 5197
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5169
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_919270.2| indoleamine 2,3-dioxygenase 2 [Homo sapiens]. 533 e-152
Alignment gi|NP_002155.1| indoleamine 2,3-dioxygenase 1 [Homo sapiens]. 280 2e-75
>ref|NP_919270.2| indoleamine 2,3-dioxygenase 2 [Homo sapiens].
Length = 420
Score = 533 bits (1374), Expect = e-152
Identities = 259/323 (80%), Positives = 288/323 (89%)
Frame = +1
Query: 76 DTSDKIMEPQSQNLKTTPPLTLERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLI 255
DTS+KIMEP N+KT PL+LE +HISEEYGFLLP+ LKELPDHYRPWMEIA+KLP LI
Sbjct: 8 DTSNKIMEPHRPNVKTAVPLSLESYHISEEYGFLLPDSLKELPDHYRPWMEIANKLPQLI 67
Query: 256 DTHQLRAQVNKMPLLNCQFLTGYKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALP 435
D HQL+A V+KMPLL+CQFL G++EQ LAHL+LSF+TMGYVWQEGE QP EVLPRNLALP
Sbjct: 68 DAHQLQAHVDKMPLLSCQFLKGHREQRLAHLVLSFLTMGYVWQEGEAQPAEVLPRNLALP 127
Query: 436 FVEVSRNLGLPPILVHADLVLANWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLV 615
FVEVSRNLGLPPILVH+DLVL NW ++P+ LEI NL+ I+SFPGGES+ GFILVT LV
Sbjct: 128 FVEVSRNLGLPPILVHSDLVLTNWTKKDPDGFLEIGNLETIISFPGGESLHGFILVTALV 187
Query: 616 EKAAVPGIKALVQAVNALLKPSPDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVI 795
EK AVPGIKALVQA NA+L+P+ + LLQALQRL LSIQDIT+ LGQMHDYVDPDIFYA I
Sbjct: 188 EKEAVPGIKALVQATNAILQPNQEALLQALQRLRLSIQDITKTLGQMHDYVDPDIFYAGI 247
Query: 796 RIFLSGWKDNPAMPAGLVYEGVSEEPLGYSGGSAAQSTVLHAFDEFLGIRHSKESADFLH 975
RIFLSGWKDNPAMPAGL+YEGVS+EPL YSGGSAAQSTVLHAFDEFLGIRHSKES DFL+
Sbjct: 248 RIFLSGWKDNPAMPAGLMYEGVSQEPLKYSGGSAAQSTVLHAFDEFLGIRHSKESGDFLY 307
Query: 976 RMRDYMPPSHKAFHREIHLAPSL 1044
RMRDYMPPSHKAF +IH APSL
Sbjct: 308 RMRDYMPPSHKAFIEDIHSAPSL 330
>ref|NP_002155.1| indoleamine 2,3-dioxygenase 1 [Homo sapiens].
Length = 403
Score = 280 bits (715), Expect = 2e-75
Identities = 140/304 (46%), Positives = 195/304 (64%), Gaps = 3/304 (0%)
Frame = +1
Query: 142 ERFHISEEYGFLLPNPLKELPDHYRPWMEIASKLPHLIDTHQLRAQVNKMPLLNCQFLTG 321
+ +HI EE GF LPNP + LPD Y WM IA LP LI++ QLR +V K+ +L+ LT
Sbjct: 13 KEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTD 72
Query: 322 YKEQHLAHLILSFITMGYVWQEGETQPKEVLPRNLALPFVEVSRNLGLPPILVHADLVLA 501
+K Q LA L+L ITM YVW +G ++VLPRN+A+P+ ++S+ L LPPILV+AD VLA
Sbjct: 73 HKSQRLARLVLGCITMAYVWGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLA 132
Query: 502 NWAARNPEKPLEIRNLDPIVSFPGGESIRGFILVTVLVEKAAVPGIKALVQAVNALLKPS 681
NW ++P KPL N+D + SF G+ +GF LV++LVE AA IK + A+
Sbjct: 133 NWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVEIAAASAIKVIPTVFKAMQMQE 192
Query: 682 PDCLLQALQRLTLSIQDITRALGQMHDYVDPDIFYAVIRIFLSGWKDNPAMPAGLVYEGV 861
D LL+AL + ++ + Q+HD+V+P F++V+RI+LSGWK NP + GLVYEG
Sbjct: 193 RDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEGF 252
Query: 862 SEEPLGYSGGSAAQSTVLHAFDEFLGIRHSK---ESADFLHRMRDYMPPSHKAFHREIHL 1032
E+P ++GGSA QS+V FD LGI+ + +A FL MR YMPP+H+ F +
Sbjct: 253 WEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLES 312
Query: 1033 APSL 1044
PS+
Sbjct: 313 NPSV 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,352,821
Number of extensions: 1612268
Number of successful extensions: 6227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6198
Number of HSP's successfully gapped: 2
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014426
(1050 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 381 e-103
>Sscrofa_Chr17
|| Length = 69701581
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 1 ccatttgaaaactcctttaacctggccttttgatacatttggagcagttgtctccttagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10896989 ccatttgaaaactcctttaacctggccttttgatacatttggagcagttgtctccttagc 10896930
Query: 61 agcagccccggtgtggatacttcagacaaaattatggagccacagagtcagaatttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10896929 agcagccccggtgtggatacttcagacaaaattatggagccacagagtcagaatttgaag 10896870
Query: 121 acaacccctccactgactttagaaagatttcacatttctgaagagtatggctttcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10896869 acaacccctccactgactttagaaagatttcacatttctgaagagtatggctttcttctt 10896810
Query: 181 ccaaatcctctg 192
||||||||||||
Sbjct: 10896809 ccaaatcctctg 10896798
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 812 ggtggaaggataacccagcaatgcctgcggggttggtgtatgagggcgtttctgaagagc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10833691 ggtggaaggataacccagcaatgcctgcggggttggtgtatgagggcgtttctgaagagc 10833632
Query: 872 ctctgggatattctggtggcagcgctgctcagagcaccgtgctccatgcctttgatgaat 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10833631 ctctgggatattctggtggcagcgctgctcagagcaccgtgctccatgcctttgatgaat 10833572
Query: 932 tcttagggattcgtcatagcaaggagagtg 961
||||||||||||||||||||||||||||||
Sbjct: 10833571 tcttagggattcgtcatagcaaggagagtg 10833542
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 287 agatgcccctcttgaactgccagttcctcacgggttacaaggagcagcacctggcccacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10870524 agatgcccctcttgaactgccagttcctcacgggttacaaggagcagcacctggcccacc 10870465
Query: 347 tgatcctgagctttatcaccatggggtatgtctggcaggaaggagagacgcagcccaaag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10870464 tgatcctgagctttatcaccatggggtatgtctggcaggaaggagagacgcagcccaaag 10870405
Query: 407 aggt 410
||||
Sbjct: 10870404 aggt 10870401
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 407 aggttctgccaagaaaccttgcccttccctttgtggaggtttccaggaacttggggctcc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10853910 aggttctgccaagaaaccttgcccttccctttgtggaggtttccaggaacttggggctcc 10853969
Query: 467 cccctatcctggttcatgcagacttggtgctggccaactgggctgcaaggaatccggaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10853970 cccctatcctggttcatgcagacttggtgctggccaactgggctgcaaggaatccggaaa 10854029
Query: 527 a 527
|
Sbjct: 10854030 a 10854030
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 641 aggcccttgttcaggcagtgaatgccctcttgaagcccagcccggactgcctgctccaag 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10862422 aggcccttgttcaggcagtgaatgccctcttgaagcccagcccggactgcctgctccaag 10862481
Query: 701 ccctgcagcgactgacactctccatccaggatatcaccagagccttgggacaaatgcacg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10862482 ccctgcagcgactgacactctccatccaggatatcaccagagccttgggacaaatgcacg 10862541
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 540 aaggaacctggaccccattgtctcctttcctgggggagaaagcatccgtggttttatact 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10858676 aaggaacctggaccccattgtctcctttcctgggggagaaagcatccgtggttttatact 10858735
Query: 600 ggtgactgttttggtggagaaagcagcggtacccgggattaagg 643
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10858736 ggtgactgttttggtggagaaagcagcggtacccgggattaagg 10858779
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 192 gaaagaactccccgatcattacaggccctggatggaaattgccagcaaactccctcactt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10878276 gaaagaactccccgatcattacaggccctggatggaaattgccagcaaactccctcactt 10878217
Query: 252 gattgacactcaccagcttcgagctcaagtgaacaag 288
|||||||||||||||||||||||||||||||||||||
Sbjct: 10878216 gattgacactcaccagcttcgagctcaagtgaacaag 10878180
Score = 137 bits (69), Expect = 1e-29
Identities = 83/85 (97%), Gaps = 2/85 (2%)
Strand = Plus / Minus
Query: 961 gcggattttctgcacaggatgagggattacatgcctccctcccacaaggcctttcataga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10830522 gcggattttctgcacaggatgagggattacatgcctccctcccacaaggcc-ttcataga 10830464
Query: 1021 -gaaatccacttggctccttccctg 1044
||||||||||||||||||||||||
Sbjct: 10830463 ggaaatccacttggctccttccctg 10830439
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 760 gattatgtcgatccagacatattttatgcagtcatccgcatcttcctttctgggt 814
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10845714 gattatgtcgatccagacatattttatgcagtcatccgcatcttcctttctgggt 10845768
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,558,751
Number of extensions: 198
Number of successful extensions: 198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 9
Length of query: 1050
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1029
Effective length of database: 2,808,413,156
Effective search space: 2889857137524
Effective search space used: 2889857137524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)