Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536829.2| PREDICTED: similar to sulfatase modifying facto... 508 e-144
Alignment gi|XP_541796.2| PREDICTED: similar to sulfatase modifying facto... 243 2e-64
>ref|XP_536829.2| PREDICTED: similar to sulfatase modifying factor 2 [Canis
familiaris].
Length = 404
Score = 508 bits (1309), Expect = e-144
Identities = 232/257 (90%), Positives = 245/257 (95%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQ T MVQLPGGRFQMGTNSPDGR+GEGPVREVTVKPFAID+FPVTNKDFR+FVREKKY
Sbjct: 127 NGQATSMVQLPGGRFQMGTNSPDGRNGEGPVREVTVKPFAIDVFPVTNKDFREFVREKKY 186
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAE FGWSFVFE+ V +ELR+K THQM+S+LWWLPVERAFWRQPAGP SGI+ERLE P
Sbjct: 187 RTEAEMFGWSFVFEEFVANELRNKVTHQMESVLWWLPVERAFWRQPAGPNSGIQERLELP 246
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
V+HVSWNDARAYCAW+GKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG
Sbjct: 247 VLHVSWNDARAYCAWKGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 306
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTAS Y +ADQDMRVLRGASWIDTADG
Sbjct: 307 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASLYPSADQDMRVLRGASWIDTADG 366
Query: 837 FANHRARVTTRMGHTPD 887
ANH ARVTTRMG+TPD
Sbjct: 367 SANHLARVTTRMGNTPD 383
>ref|XP_541796.2| PREDICTED: similar to sulfatase modifying factor 1 [Canis
familiaris].
Length = 374
Score = 243 bits (620), Expect = 2e-64
Identities = 122/270 (45%), Positives = 165/270 (61%), Gaps = 17/270 (6%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P +DGE P R V++ F +D + V+N DF FV Y TE
Sbjct: 89 TKMVLIPAGVFTMGTDDPQIKQDGEAPARRVSIDAFYMDAYEVSNADFEKFVNSTGYLTE 148
Query: 306 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 485
AE FG SFVFE ++ +++++ + + WWLPV+ A WR P GP S R + PV+H
Sbjct: 149 AEKFGDSFVFEGMLSEQVKTDIQQAVAAAPWWLPVKGANWRHPEGPDSTTLHRPDHPVLH 208
Query: 486 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 656
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 209 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 268
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA-------------SPYQAADQDMR 797
+ EDGF G +PV+AFPP N YGLY+++GNVWEWT+ +P R
Sbjct: 269 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNVWEWTSDWWTVHHSVEKTHNPKGPPSGKDR 327
Query: 798 VLRGASWIDTADGFANHRARVTTRMGHTPD 887
V +G S++ +R R R +TPD
Sbjct: 328 VKKGGSYM--CHKSYCYRYRCAARSQNTPD 355
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,812,070
Number of extensions: 1466271
Number of successful extensions: 6738
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6661
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 194
Effective length of database: 15,474,232
Effective search space: 3002001008
Effective search space used: 3002001008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014427
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos ... 523 e-148
Alignment gi|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos ... 244 1e-64
Alignment gi|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like... 73 4e-13
>ref|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos taurus].
Length = 301
Score = 523 bits (1346), Expect = e-148
Identities = 241/257 (93%), Positives = 250/257 (97%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQT MVQLPGGRFQMGT+SPDGRDGEGPVREVTVKPFAIDIFPVTNKDFR+FVREKKY
Sbjct: 24 NGQTVNMVQLPGGRFQMGTDSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFREFVREKKY 83
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAE FGWSFVFEDLV DELR+KAT +MQSLLWWLPVERAFWRQPAGPGSGIRE+LEFP
Sbjct: 84 RTEAEVFGWSFVFEDLVSDELRNKATQRMQSLLWWLPVERAFWRQPAGPGSGIREKLEFP 143
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGN+FQPNRTNLWQGKFPKG
Sbjct: 144 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNKFQPNRTNLWQGKFPKG 203
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFPPQN+YGLYDL+GNVWEWTAS YQAADQDMRVLRGASWIDTADG
Sbjct: 204 DKAEDGFHGVSPVNAFPPQNDYGLYDLVGNVWEWTASQYQAADQDMRVLRGASWIDTADG 263
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 264 SANHRARVTTRMGNTPD 280
>ref|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos taurus].
Length = 374
Score = 244 bits (622), Expect = 1e-64
Identities = 121/270 (44%), Positives = 169/270 (62%), Gaps = 17/270 (6%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 89 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 148
Query: 306 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 485
AE FG SFVFE ++ ++++S + + WWLPV+ A WR P GP S + R + PV+H
Sbjct: 149 AEKFGDSFVFEGMLSEQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVLHRPDHPVLH 208
Query: 486 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 656
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 209 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 268
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 797
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + +A++ + R
Sbjct: 269 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTVHHSAEETINPKGPPSGKDR 327
Query: 798 VLRGASWIDTADGFANHRARVTTRMGHTPD 887
V +G S++ +R R R +TPD
Sbjct: 328 VKKGGSYM--CHKSYCYRYRCAARSQNTPD 355
>ref|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like, partial [Bos taurus].
Length = 173
Score = 72.8 bits (177), Expect = 4e-13
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 89 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 148
Query: 306 AEAFGWSFVFEDLVPDELRS 365
AE FG SFVFE ++ ++++S
Sbjct: 149 AEKFGDSFVFEGMLSEQVKS 168
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,914,077
Number of extensions: 1414824
Number of successful extensions: 6230
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6183
Number of HSP's successfully gapped: 3
Length of query: 296
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,306,398
Effective search space: 2775441212
Effective search space used: 2775441212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like... 550 e-157
Alignment gi|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like... 505 e-143
Alignment gi|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like... 246 2e-65
Alignment gi|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like... 212 2e-55
>ref|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Sus
scrofa].
Length = 301
Score = 550 bits (1417), Expect = e-157
Identities = 255/257 (99%), Positives = 256/257 (99%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 24 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 83
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP
Sbjct: 84 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 143
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG
Sbjct: 144 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 203
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG
Sbjct: 204 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 263
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 264 SANHRARVTTRMGNTPD 280
>ref|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Sus
scrofa].
Length = 286
Score = 505 bits (1301), Expect = e-143
Identities = 240/257 (93%), Positives = 241/257 (93%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 24 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 83
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAEAFGWSFVFEDLVPDELRSKATHQMQ PAGPGSGIRERLEFP
Sbjct: 84 RTEAEAFGWSFVFEDLVPDELRSKATHQMQ---------------PAGPGSGIRERLEFP 128
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG
Sbjct: 129 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 188
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG
Sbjct: 189 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 248
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 249 SANHRARVTTRMGNTPD 265
>ref|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like isoform 1 [Sus
scrofa].
Length = 374
Score = 246 bits (627), Expect = 2e-65
Identities = 123/270 (45%), Positives = 169/270 (62%), Gaps = 17/270 (6%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 89 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 148
Query: 306 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 485
AE FG SFVFE ++ D+++S + + WWLPV+ A WR P GP S + R + PV+H
Sbjct: 149 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 208
Query: 486 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 656
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 209 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 268
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 797
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 269 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 327
Query: 798 VLRGASWIDTADGFANHRARVTTRMGHTPD 887
V +G S++ +R R R +TPD
Sbjct: 328 VKKGGSYM--CHKSYCYRYRCAARSQNTPD 355
>ref|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like isoform 2 [Sus
scrofa].
Length = 349
Score = 212 bits (540), Expect = 2e-55
Identities = 113/270 (41%), Positives = 152/270 (56%), Gaps = 17/270 (6%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 89 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 148
Query: 306 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 485
A W WLPV+ A WR P GP S + R + PV+H
Sbjct: 149 VAAAPW-------------------------WLPVKGANWRHPEGPDSTVVHRPDHPVLH 183
Query: 486 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 656
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 184 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 243
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 797
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 244 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 302
Query: 798 VLRGASWIDTADGFANHRARVTTRMGHTPD 887
V +G S++ +R R R +TPD
Sbjct: 303 VKKGGSYM--CHKSYCYRYRCAARSQNTPD 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,135,719
Number of extensions: 921703
Number of successful extensions: 4184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4127
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,904,026
Effective search space: 1762997148
Effective search space used: 1762997148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like... 473 e-133
Alignment gi|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus mus... 473 e-133
Alignment gi|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like... 338 3e-93
Alignment gi|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like... 338 3e-93
Alignment gi|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus mus... 250 9e-67
>ref|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Mus
musculus].
Length = 308
Score = 473 bits (1216), Expect = e-133
Identities = 219/257 (85%), Positives = 233/257 (90%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
+ Q MV LPGGRF MGT++PDGRDGEGP REVTVKPFAIDIFPVTNKDFR+FVREKKY
Sbjct: 32 HAQDPAMVHLPGGRFLMGTDAPDGRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKY 91
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
+TEAEAFGWSFVFED V ELR K + M ++ WW PV +AFWRQPAGPGSGIRE+LE P
Sbjct: 92 QTEAEAFGWSFVFEDFVSPELR-KQENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELP 150
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
VVHVSWNDA AYCAWRG+RLPTEEEWEFAARGGLKGQVYPWGN+FQPNRTNLWQGKFPKG
Sbjct: 151 VVHVSWNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQPNRTNLWQGKFPKG 210
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHG+SPVNAFPPQNNYGLYDLMGNVWEWTAS YQ A QDMRVLRGASWIDTADG
Sbjct: 211 DKAEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTYQPAGQDMRVLRGASWIDTADG 270
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 271 SANHRARVTTRMGNTPD 287
>ref|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus musculus].
Length = 308
Score = 473 bits (1216), Expect = e-133
Identities = 219/257 (85%), Positives = 233/257 (90%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
+ Q MV LPGGRF MGT++PDGRDGEGP REVTVKPFAIDIFPVTNKDFR+FVREKKY
Sbjct: 32 HAQDPAMVHLPGGRFLMGTDAPDGRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKY 91
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
+TEAEAFGWSFVFED V ELR K + M ++ WW PV +AFWRQPAGPGSGIRE+LE P
Sbjct: 92 QTEAEAFGWSFVFEDFVSPELR-KQENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELP 150
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
VVHVSWNDA AYCAWRG+RLPTEEEWEFAARGGLKGQVYPWGN+FQPNRTNLWQGKFPKG
Sbjct: 151 VVHVSWNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQPNRTNLWQGKFPKG 210
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHG+SPVNAFPPQNNYGLYDLMGNVWEWTAS YQ A QDMRVLRGASWIDTADG
Sbjct: 211 DKAEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTYQPAGQDMRVLRGASWIDTADG 270
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 271 SANHRARVTTRMGNTPD 287
>ref|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Mus
musculus].
Length = 190
Score = 338 bits (867), Expect = 3e-93
Identities = 151/169 (89%), Positives = 159/169 (94%)
Frame = +3
Query: 381 MQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVSWNDARAYCAWRGKRLPTEEEWEF 560
M ++ WW PV +AFWRQPAGPGSGIRE+LE PVVHVSWNDA AYCAWRG+RLPTEEEWEF
Sbjct: 1 MPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEF 60
Query: 561 AARGGLKGQVYPWGNQFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPPQNNYGLYDLM 740
AARGGLKGQVYPWGN+FQPNRTNLWQGKFPKGDKAEDGFHG+SPVNAFPPQNNYGLYDLM
Sbjct: 61 AARGGLKGQVYPWGNRFQPNRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDLM 120
Query: 741 GNVWEWTASPYQAADQDMRVLRGASWIDTADGFANHRARVTTRMGHTPD 887
GNVWEWTAS YQ A QDMRVLRGASWIDTADG ANHRARVTTRMG+TPD
Sbjct: 121 GNVWEWTASTYQPAGQDMRVLRGASWIDTADGSANHRARVTTRMGNTPD 169
>ref|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like isoform 3 [Mus
musculus].
Length = 190
Score = 338 bits (867), Expect = 3e-93
Identities = 151/169 (89%), Positives = 159/169 (94%)
Frame = +3
Query: 381 MQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVSWNDARAYCAWRGKRLPTEEEWEF 560
M ++ WW PV +AFWRQPAGPGSGIRE+LE PVVHVSWNDA AYCAWRG+RLPTEEEWEF
Sbjct: 1 MPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEF 60
Query: 561 AARGGLKGQVYPWGNQFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPPQNNYGLYDLM 740
AARGGLKGQVYPWGN+FQPNRTNLWQGKFPKGDKAEDGFHG+SPVNAFPPQNNYGLYDLM
Sbjct: 61 AARGGLKGQVYPWGNRFQPNRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDLM 120
Query: 741 GNVWEWTASPYQAADQDMRVLRGASWIDTADGFANHRARVTTRMGHTPD 887
GNVWEWTAS YQ A QDMRVLRGASWIDTADG ANHRARVTTRMG+TPD
Sbjct: 121 GNVWEWTASTYQPAGQDMRVLRGASWIDTADGSANHRARVTTRMGNTPD 169
>ref|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus musculus].
Length = 372
Score = 250 bits (639), Expect = 9e-67
Identities = 127/270 (47%), Positives = 165/270 (61%), Gaps = 17/270 (6%)
Frame = +3
Query: 129 TGMVQLPGGRFQMGTNSPDGR-DGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 305
T MV +P G F MGT+ P R DGE P R VTV F +D + V+N DF FV Y TE
Sbjct: 87 TKMVPIPAGVFTMGTDDPQIRQDGEAPARRVTVDGFYMDAYEVSNADFEKFVNSTGYLTE 146
Query: 306 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 485
AE FG SFVFE ++ +++++ + + WWLPV+ A WR P GP S I R PV+H
Sbjct: 147 AEKFGDSFVFEGMLSEQVKTHIHQAVAAAPWWLPVKGANWRHPEGPDSSILHRSNHPVLH 206
Query: 486 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 656
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQGKFP
Sbjct: 207 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGKFPVS 266
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA-------------SPYQAADQDMR 797
+ EDGF G +PV+AFPP N YGLY+++GNVWEWT+ +P R
Sbjct: 267 NTGEDGFQGTAPVDAFPP-NGYGLYNIVGNVWEWTSDWWTVHHSVEETFNPKGPTSGKDR 325
Query: 798 VLRGASWIDTADGFANHRARVTTRMGHTPD 887
V +G S++ +R R R +TPD
Sbjct: 326 VKKGGSYM--CHKSYCYRYRCAARSQNTPD 353
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,939,613
Number of extensions: 1174674
Number of successful extensions: 4933
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4870
Number of HSP's successfully gapped: 5
Length of query: 296
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 195
Effective length of database: 12,583,923
Effective search space: 2453864985
Effective search space used: 2453864985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056226.2| sulfatase-modifying factor 2 isoform b precurso... 507 e-144
Alignment gi|NP_001035934.2| sulfatase-modifying factor 2 isoform c precu... 464 e-131
Alignment gi|NP_001123541.1| sulfatase-modifying factor 2 isoform e precu... 400 e-112
Alignment gi|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo... 388 e-108
Alignment gi|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precurso... 242 3e-64
Alignment gi|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precu... 242 4e-64
Alignment gi|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precu... 211 7e-55
Alignment gi|NP_001035935.2| sulfatase-modifying factor 2 isoform d precu... 174 1e-43
>ref|NP_056226.2| sulfatase-modifying factor 2 isoform b precursor [Homo sapiens].
Length = 320
Score = 507 bits (1305), Expect = e-144
Identities = 234/257 (91%), Positives = 242/257 (94%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQ T MVQL GGRF MGTNSPD RDGEGPVRE TVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 43 NGQATSMVQLQGGRFLMGTNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKY 102
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAE FGWSFVFED V DELR+KAT M+S+LWWLPVE+AFWRQPAGPGSGIRERLE P
Sbjct: 103 RTEAEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHP 162
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
V+HVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGN FQPNRTNLWQGKFPKG
Sbjct: 163 VLHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKG 222
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFP QNNYGLYDL+GNVWEWTASPYQAA+QDMRVLRGASWIDTADG
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRGASWIDTADG 282
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 283 SANHRARVTTRMGNTPD 299
>ref|NP_001035934.2| sulfatase-modifying factor 2 isoform c precursor [Homo sapiens].
Length = 305
Score = 464 bits (1195), Expect = e-131
Identities = 221/257 (85%), Positives = 227/257 (88%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQ T MVQL GGRF MGTNSPD RDGEGPVRE TVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 43 NGQATSMVQLQGGRFLMGTNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKY 102
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAE FGWSFVFED V DELR+KAT M+ PAGPGSGIRERLE P
Sbjct: 103 RTEAEMFGWSFVFEDFVSDELRNKATQPMK---------------PAGPGSGIRERLEHP 147
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
V+HVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGN FQPNRTNLWQGKFPKG
Sbjct: 148 VLHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKG 207
Query: 657 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADG 836
DKAEDGFHGVSPVNAFP QNNYGLYDL+GNVWEWTASPYQAA+QDMRVLRGASWIDTADG
Sbjct: 208 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRGASWIDTADG 267
Query: 837 FANHRARVTTRMGHTPD 887
ANHRARVTTRMG+TPD
Sbjct: 268 SANHRARVTTRMGNTPD 284
>ref|NP_001123541.1| sulfatase-modifying factor 2 isoform e precursor [Homo sapiens].
Length = 358
Score = 400 bits (1028), Expect = e-112
Identities = 184/203 (90%), Positives = 189/203 (93%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQ T MVQL GGRF MGTNSPD RDGEGPVRE TVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 43 NGQATSMVQLQGGRFLMGTNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKY 102
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFP 476
RTEAE FGWSFVFED V DELR+KAT M+S+LWWLPVE+AFWRQPAGPGSGIRERLE P
Sbjct: 103 RTEAEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHP 162
Query: 477 VVHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKG 656
V+HVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGN FQPNRTNLWQGKFPKG
Sbjct: 163 VLHVSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKG 222
Query: 657 DKAEDGFHGVSPVNAFPPQNNYG 725
DKAEDGFHGVSPVNAFP QNNYG
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYG 245
>ref|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo sapiens].
Length = 213
Score = 388 bits (996), Expect = e-108
Identities = 175/191 (91%), Positives = 183/191 (95%)
Frame = +3
Query: 315 FGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVSW 494
FGWSFVFED V DELR+KAT M+S+LWWLPVE+AFWRQPAGPGSGIRERLE PV+HVSW
Sbjct: 2 FGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSW 61
Query: 495 NDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQPNRTNLWQGKFPKGDKAEDG 674
NDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGN FQPNRTNLWQGKFPKGDKAEDG
Sbjct: 62 NDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDG 121
Query: 675 FHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWIDTADGFANHRA 854
FHGVSPVNAFP QNNYGLYDL+GNVWEWTASPYQAA+QDMRVLRGASWIDTADG ANHRA
Sbjct: 122 FHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRGASWIDTADGSANHRA 181
Query: 855 RVTTRMGHTPD 887
RVTTRMG+TPD
Sbjct: 182 RVTTRMGNTPD 192
>ref|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precursor [Homo sapiens].
Length = 374
Score = 242 bits (618), Expect = 3e-64
Identities = 121/268 (45%), Positives = 163/268 (60%), Gaps = 17/268 (6%)
Frame = +3
Query: 135 MVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTEAE 311
MV +P G F MGT+ P +DGE P R VT+ F +D + V+N +F FV Y TEAE
Sbjct: 91 MVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAE 150
Query: 312 AFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVS 491
FG SFVFE ++ +++++ + + WWLPV+ A WR P GP S I R + PV+HVS
Sbjct: 151 KFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVS 210
Query: 492 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKGDK 662
WNDA AYC W GKRLPTE EWE++ RGGL +++PWGN+ QP + N+WQG+FP +
Sbjct: 211 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 270
Query: 663 AEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA-------------SPYQAADQDMRVL 803
EDGF G +PV+AFPP N YGLY+++GN WEWT+ +P RV
Sbjct: 271 GEDGFQGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVK 329
Query: 804 RGASWIDTADGFANHRARVTTRMGHTPD 887
+G S++ +R R R +TPD
Sbjct: 330 KGGSYM--CHRSYCYRYRCAARSQNTPD 355
>ref|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precursor [Homo sapiens].
Length = 354
Score = 242 bits (617), Expect = 4e-64
Identities = 110/214 (51%), Positives = 146/214 (68%), Gaps = 4/214 (1%)
Frame = +3
Query: 135 MVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTEAE 311
MV +P G F MGT+ P +DGE P R VT+ F +D + V+N +F FV Y TEAE
Sbjct: 91 MVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAE 150
Query: 312 AFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVS 491
FG SFVFE ++ +++++ + + WWLPV+ A WR P GP S I R + PV+HVS
Sbjct: 151 KFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVS 210
Query: 492 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKGDK 662
WNDA AYC W GKRLPTE EWE++ RGGL +++PWGN+ QP + N+WQG+FP +
Sbjct: 211 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 270
Query: 663 AEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA 764
EDGF G +PV+AFPP N YGLY+++GN WEWT+
Sbjct: 271 GEDGFQGTAPVDAFPP-NGYGLYNIVGNAWEWTS 303
>ref|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precursor [Homo sapiens].
Length = 349
Score = 211 bits (537), Expect = 7e-55
Identities = 113/268 (42%), Positives = 146/268 (54%), Gaps = 17/268 (6%)
Frame = +3
Query: 135 MVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTEAE 311
MV +P G F MGT+ P +DGE P R VT+ F +D + V+N +F FV Y TE
Sbjct: 91 MVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEVA 150
Query: 312 AFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVHVS 491
A W WLPV+ A WR P GP S I R + PV+HVS
Sbjct: 151 AAPW-------------------------WLPVKGANWRHPEGPDSTILHRPDHPVLHVS 185
Query: 492 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKGDK 662
WNDA AYC W GKRLPTE EWE++ RGGL +++PWGN+ QP + N+WQG+FP +
Sbjct: 186 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 245
Query: 663 AEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA-------------SPYQAADQDMRVL 803
EDGF G +PV+AFPP N YGLY+++GN WEWT+ +P RV
Sbjct: 246 GEDGFQGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVK 304
Query: 804 RGASWIDTADGFANHRARVTTRMGHTPD 887
+G S++ +R R R +TPD
Sbjct: 305 KGGSYM--CHRSYCYRYRCAARSQNTPD 330
>ref|NP_001035935.2| sulfatase-modifying factor 2 isoform d precursor [Homo sapiens].
Length = 236
Score = 174 bits (441), Expect = 1e-43
Identities = 90/142 (63%), Positives = 101/142 (71%), Gaps = 3/142 (2%)
Frame = +3
Query: 471 FPVVHVSWNDARAYCAWRGKRLPTEEE---WEFAARGGLKGQVYPWGNQFQPNRTNLWQG 641
FPV + + D R K+ TE E W F + ++ + T +G
Sbjct: 86 FPVTNKDFRDFV-----REKKYRTEAEMFGWSFVFEDFVS-------DELRNKATQPMKG 133
Query: 642 KFPKGDKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTASPYQAADQDMRVLRGASWI 821
KFPKGDKAEDGFHGVSPVNAFP QNNYGLYDL+GNVWEWTASPYQAA+QDMRVLRGASWI
Sbjct: 134 KFPKGDKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTASPYQAAEQDMRVLRGASWI 193
Query: 822 DTADGFANHRARVTTRMGHTPD 887
DTADG ANHRARVTTRMG+TPD
Sbjct: 194 DTADGSANHRARVTTRMGNTPD 215
Score = 160 bits (406), Expect = 1e-39
Identities = 77/90 (85%), Positives = 79/90 (87%)
Frame = +3
Query: 117 NGQTTGMVQLPGGRFQMGTNSPDGRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKY 296
NGQ T MVQL GGRF MGTNSPD RDGEGPVRE TVKPFAIDIFPVTNKDFRDFVREKKY
Sbjct: 43 NGQATSMVQLQGGRFLMGTNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKY 102
Query: 297 RTEAEAFGWSFVFEDLVPDELRSKATHQMQ 386
RTEAE FGWSFVFED V DELR+KAT M+
Sbjct: 103 RTEAEMFGWSFVFEDFVSDELRNKATQPMK 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,839,679
Number of extensions: 1429976
Number of successful extensions: 6134
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6059
Number of HSP's successfully gapped: 9
Length of query: 296
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 194
Effective length of database: 14,934,836
Effective search space: 2897358184
Effective search space used: 2897358184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014427
(888 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 317 6e-84
>Sscrofa_Chr03
|| Length = 144787322
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 113 aggaaatgggcagacgactggcatggtccagctacctggtgggagatttcagatgggaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092633 aggaaatgggcagacgactggcatggtccagctacctggtgggagatttcagatgggaac 17092574
Query: 173 aaattcaccagatggcagagatggtgaaggacctgtccgggaggtgacagtaaaaccctt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092573 aaattcaccagatggcagagatggtgaaggacctgtccgggaggtgacagtaaaaccctt 17092514
Query: 233 tgccattgacatatttcctgtcaccaacaaagatttcagg 272
||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092513 tgccattgacatatttcctgtcaccaacaaagatttcagg 17092474
Score = 301 bits (152), Expect = 3e-79
Identities = 155/156 (99%)
Strand = Plus / Minus
Query: 429 cagcctgcaggtcccggctctggcatccgagagagactggagttcccggtggtacacgtg 488
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 17089965 cagcctgcaggtcccggctctggcatccgagagagactggagttcccagtggtacacgtg 17089906
Query: 489 agctggaatgatgcccgtgcctactgtgcttggcgggggaaacggctgcccactgaggaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17089905 agctggaatgatgcccgtgcctactgtgcttggcgggggaaacggctgcccactgaggaa 17089846
Query: 549 gagtgggagtttgctgcccgtgggggcttgaagggt 584
||||||||||||||||||||||||||||||||||||
Sbjct: 17089845 gagtgggagtttgctgcccgtgggggcttgaagggt 17089810
Score = 276 bits (139), Expect = 2e-71
Identities = 145/147 (98%)
Strand = Plus / Minus
Query: 723 gggctctatgacctcatgggcaacgtgtgggagtggacagcgtcaccgtaccaggctgcc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17085146 gggctctatgacctcatgggcaacgtgtgggagtggacagcgtcaccgtaccaggctgcc 17085087
Query: 783 gaccaggacatgcgtgtcctccggggggcgtcttggatcgacacagccgacggcttcgcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 17085086 gaccaggacatgcgtgtcctccggggggcgtcttggatcgacacagccgacggctccgcc 17085027
Query: 843 aaccaccgggcccgcgtcaccaccagg 869
|| ||||||||||||||||||||||||
Sbjct: 17085026 aatcaccgggcccgcgtcaccaccagg 17085000
Score = 238 bits (120), Expect = 4e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 267 ttcagggactttgtcagggagaagaagtaccggacagaggctgaggcgtttgggtggagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17091128 ttcagggactttgtcagggagaagaagtaccggacagaggctgaggcgtttgggtggagt 17091069
Query: 327 tttgtttttgaggaccttgtgcccgatgagcttagaagcaaagcaacccatcaaatgcag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17091068 tttgtttttgaggaccttgtgcccgatgagcttagaagcaaagcaacccatcaaatgcag 17091009
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 1 agttccgcgtactctgcgcgtggtgattccgggctcgtgtcctcggcatgggtcctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17095303 agttccgcgtactctgcgcgtggtgattccgggctcgtgtcctcggcatgggtcctttgc 17095244
Query: 61 tgtcgccgctgctgaccctgctgtcgctcctctccggtccttggctcgaactagg 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17095243 tgtcgccgctgctgaccctgctgtcgctcctctccggtccttggctcgaactagg 17095189
Score = 168 bits (85), Expect = 3e-39
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 636 cagggaaagttccccaagggtgacaaggctgaagatggcttccacggagtctccccggtg 695
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 17085369 cagggaaagttccccaagggtgacaaggctgaggatggcttccacggagtctccccggtg 17085310
Query: 696 aacgctttccccccgcagaacaactacgg 724
|||||||||||||||||||||||||||||
Sbjct: 17085309 aacgctttccccccgcagaacaactacgg 17085281
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 582 ggtcaggtgtacccctggggaaaccagttccagccaaaccgcaccaacctgtggcagg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17088589 ggtcaggtgtacccctggggaaaccagttccagccaaaccgcaccaacctgtggcagg 17088532
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 382 tgcagtctcttctctggtggctgccagtggaaagggcattctggaggcag 431
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17090583 tgcagtctcttctctggtggctgccagtggaaagggcattctggaggcag 17090534
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,132,224
Number of extensions: 112
Number of successful extensions: 112
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 8
Length of query: 888
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 867
Effective length of database: 2,808,413,156
Effective search space: 2434894206252
Effective search space used: 2434894206252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)