Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001099120.1| nucleoside diphosphate-linked moiety X motif... 435 e-122
>ref|NP_001099120.1| nucleoside diphosphate-linked moiety X motif 6 [Bos taurus].
Length = 257
Score = 435 bits (1118), Expect = e-122
Identities = 208/230 (90%), Positives = 220/230 (95%)
Frame = +1
Query: 304 AIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSSTLTLWLGKGPSRLPGYA 483
A+QKWRSEGRVAVWLHIPI QSRFIAPAASLGFCFHH ESDSS L+LWLG GPSRLPGYA
Sbjct: 22 AVQKWRSEGRVAVWLHIPILQSRFIAPAASLGFCFHHTESDSSMLSLWLGDGPSRLPGYA 81
Query: 484 THQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKS 663
THQVGVAGAVFDENT+KILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKS
Sbjct: 82 THQVGVAGAVFDENTRKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKS 141
Query: 664 EFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQHECLRCEWMDLSDLVKSENT 843
EF SLLSIRQQHT+PGAFGKSDMYIICRLKP SFTINFCQ ECL+CEWM+LSDLVK++NT
Sbjct: 142 EFRSLLSIRQQHTHPGAFGKSDMYIICRLKPYSFTINFCQRECLKCEWMNLSDLVKTKNT 201
Query: 844 TPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LYHRELPEHYK 993
TPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGL LYH++LP++YK
Sbjct: 202 TPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLFYKLYHKKLPDNYK 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,321,215
Number of extensions: 1186684
Number of successful extensions: 4160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4156
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014440
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540961.2| PREDICTED: similar to Nucleoside diphosphate-li... 486 e-137
Alignment gi|XP_854518.1| PREDICTED: similar to Nucleoside diphosphate-li... 228 7e-60
>ref|XP_540961.2| PREDICTED: similar to Nucleoside diphosphate-linked moiety X motif
6 (Nudix motif 6) (Protein GFG) (GFG-1) (Antisense basic
fibroblast growth factor) [Canis familiaris].
Length = 339
Score = 486 bits (1250), Expect = e-137
Identities = 235/273 (86%), Positives = 254/273 (93%), Gaps = 3/273 (1%)
Frame = +1
Query: 184 DPPSVAGELRGELDRFGGVSV---KLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHI 354
D P+ A ELRGE DRFGGVSV +L ALDRLD +F+R LQAAIQ+WRSEGR+AVWLHI
Sbjct: 61 DAPAGADELRGEPDRFGGVSVQLARLGALDRLDAASFRRGLQAAIQQWRSEGRIAVWLHI 120
Query: 355 PIFQSRFIAPAASLGFCFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKK 534
PI QSRFIAPAASLGFCFHHAESDSSTLTLWLG+GPSRLPGYATHQ+GVAGAVFDENT+K
Sbjct: 121 PILQSRFIAPAASLGFCFHHAESDSSTLTLWLGEGPSRLPGYATHQLGVAGAVFDENTRK 180
Query: 535 ILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGA 714
ILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEF SLLSIRQQH +PGA
Sbjct: 181 ILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFKSLLSIRQQHASPGA 240
Query: 715 FGKSDMYIICRLKPRSFTINFCQHECLRCEWMDLSDLVKSENTTPITSRVARLLLYGYKE 894
FGKSDMYIICRLKP SFTINFCQHECLRCEWMDL+DL+K+ENTTPITSRVARLLLYGY+E
Sbjct: 241 FGKSDMYIICRLKPYSFTINFCQHECLRCEWMDLNDLIKTENTTPITSRVARLLLYGYRE 300
Query: 895 GFDKIDLTMEELPAVYTGLSL*LYHRELPEHYK 993
GFDKID TMEELPAVYTGL LYH++LP++Y+
Sbjct: 301 GFDKIDFTMEELPAVYTGLFYKLYHKKLPDNYR 333
>ref|XP_854518.1| PREDICTED: similar to Nucleoside diphosphate-linked moiety X motif
6 (Nudix motif 6) (Protein GFG) (GFG-1) (Antisense basic
fibroblast growth factor) [Canis familiaris].
Length = 159
Score = 228 bits (581), Expect = 7e-60
Identities = 110/129 (85%), Positives = 119/129 (92%)
Frame = +1
Query: 607 EDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQH 786
E++GDTAVREVFEETGIKSEF SLLSIRQQHTNPGAFGKSDMYIICRLKP SFTINFCQH
Sbjct: 26 EEMGDTAVREVFEETGIKSEFKSLLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQH 85
Query: 787 ECLRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LY 966
ECLRCEWMDL DL+K+ENTTPITSRVARLLLYGY+EGFDKID T EELP VYTGL LY
Sbjct: 86 ECLRCEWMDLHDLIKTENTTPITSRVARLLLYGYREGFDKIDFTTEELP-VYTGLFYKLY 144
Query: 967 HRELPEHYK 993
H+EL ++Y+
Sbjct: 145 HKELTDNYR 153
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,132,110
Number of extensions: 1222246
Number of successful extensions: 4243
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4238
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129259.1| PREDICTED: nucleoside diphosphate-linked moi... 543 e-155
Alignment gi|XP_003129258.1| PREDICTED: nucleoside diphosphate-linked moi... 467 e-132
>ref|XP_003129259.1| PREDICTED: nucleoside diphosphate-linked moiety X motif 6-like
isoform 2 [Sus scrofa].
Length = 284
Score = 543 bits (1399), Expect = e-155
Identities = 271/307 (88%), Positives = 274/307 (89%)
Frame = +1
Query: 73 MPPLRSGRCWFTGLARVRHAMLYAGLRGASSFLGCSRDPPSVAGELRGELDRFGGVSVKL 252
MPPLRSGR WFTGLARVRHAMLYAGLRGASSFLGCSRDPPSVAGELR
Sbjct: 1 MPPLRSGRYWFTGLARVRHAMLYAGLRGASSFLGCSRDPPSVAGELR------------- 47
Query: 253 DALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSS 432
AAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSS
Sbjct: 48 ----------------AAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSS 91
Query: 433 TLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGED 612
TLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGED
Sbjct: 92 TLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGED 151
Query: 613 IGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQHEC 792
IGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSF INFCQHEC
Sbjct: 152 IGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFIINFCQHEC 211
Query: 793 LRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LYHR 972
LRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLS LYH+
Sbjct: 212 LRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSYKLYHK 271
Query: 973 ELPEHYK 993
ELP++YK
Sbjct: 272 ELPDNYK 278
>ref|XP_003129258.1| PREDICTED: nucleoside diphosphate-linked moiety X motif 6-like
isoform 1 [Sus scrofa].
Length = 242
Score = 467 bits (1202), Expect = e-132
Identities = 226/233 (96%), Positives = 230/233 (98%)
Frame = +1
Query: 295 LQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSSTLTLWLGKGPSRLP 474
L+AAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSSTLTLWLGKGPSRLP
Sbjct: 4 LRAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSSTLTLWLGKGPSRLP 63
Query: 475 GYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETG 654
GYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETG
Sbjct: 64 GYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETG 123
Query: 655 IKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQHECLRCEWMDLSDLVKS 834
IKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSF INFCQHECLRCEWMDLSDLVKS
Sbjct: 124 IKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFIINFCQHECLRCEWMDLSDLVKS 183
Query: 835 ENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LYHRELPEHYK 993
ENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLS LYH+ELP++YK
Sbjct: 184 ENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSYKLYHKELPDNYK 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,628,405
Number of extensions: 763278
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2730
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705789.1| nucleoside diphosphate-linked moiety X motif 6 ... 451 e-127
>ref|NP_705789.1| nucleoside diphosphate-linked moiety X motif 6 [Mus musculus].
Length = 312
Score = 451 bits (1160), Expect = e-127
Identities = 228/307 (74%), Positives = 253/307 (82%), Gaps = 3/307 (0%)
Frame = +1
Query: 82 LRSGRCWFTGLARVRHAMLYAGLRGASSFLGCSRDPPSVAGELRGELDRFGGVSVKLD-- 255
+R R WF+ L A L G R AS L P S EL+GELDRFGGVSV L
Sbjct: 4 VRRTRYWFSTLLYAGGARLRPGRRTASGGL---ETPGSCGAELQGELDRFGGVSVHLSRH 60
Query: 256 -ALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDSS 432
L LD AF+R LQAAIQ+WRSEGR+A WLHIPI QS FIAPAASLGFCFHHA+ SS
Sbjct: 61 HTLHGLDAAAFRRLLQAAIQQWRSEGRIAAWLHIPILQSHFIAPAASLGFCFHHAKPHSS 120
Query: 433 TLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGED 612
TLTLWLG+GPSRLPGYATHQVGVAGAVFD +T+K+LVVQDRNKLKNMWKFPGGLSEPGED
Sbjct: 121 TLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDRNKLKNMWKFPGGLSEPGED 180
Query: 613 IGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQHEC 792
I DTAVREVFEETG+KSEF SLLSIRQQH +PGAFG SDMY++CRL+PRSFTINFCQ EC
Sbjct: 181 I-DTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVCRLQPRSFTINFCQQEC 239
Query: 793 LRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LYHR 972
L+CEW+DL +L ++++TTPITSRVARLLLYG +EGFDKIDL+MEELPAVYTGL LYHR
Sbjct: 240 LKCEWIDLENLARTKHTTPITSRVARLLLYGLREGFDKIDLSMEELPAVYTGLFYKLYHR 299
Query: 973 ELPEHYK 993
ELPE YK
Sbjct: 300 ELPESYK 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,863,389
Number of extensions: 1001278
Number of successful extensions: 3260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3257
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009014.2| nucleoside diphosphate-linked moiety X motif 6 ... 494 e-140
Alignment gi|NP_932158.1| nucleoside diphosphate-linked moiety X motif 6 ... 265 7e-71
Alignment gi|NP_694853.1| diphosphoinositol polyphosphate phosphohydrolas... 49 1e-05
>ref|NP_009014.2| nucleoside diphosphate-linked moiety X motif 6 isoform a [Homo
sapiens].
Length = 316
Score = 494 bits (1272), Expect = e-140
Identities = 249/308 (80%), Positives = 268/308 (87%), Gaps = 3/308 (0%)
Frame = +1
Query: 79 PLRSGRCWFTGLARVRHAMLYAGLRGASSFLGCSRDPPSVAGELRGELDRFGGVSVKL-- 252
PL GR W LAR AG R AS G R+PP A +L+GELDRFGG+SV+L
Sbjct: 4 PLSWGR-WRAMLARTYGPGPSAGYRWASGAQGYVRNPPVGACDLQGELDRFGGISVRLAR 62
Query: 253 -DALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGFCFHHAESDS 429
DALDRLD AFQ+ LQAA+Q+WRSEGR AVWLHIPI QSRFIAPAASLGFCFHHAESDS
Sbjct: 63 LDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDS 122
Query: 430 STLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDRNKLKNMWKFPGGLSEPGE 609
STLTLWL +GPSRLPGYA+HQVGVAGAVFDE+T+KILVVQDRNKLKNMWKFPGGLSEP E
Sbjct: 123 STLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEE 182
Query: 610 DIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKPRSFTINFCQHE 789
DIGDTAVREVFEETGIKSEF S+LSIRQQHTNPGAFGKSDMYIICRLKP SFTINFCQ E
Sbjct: 183 DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEE 242
Query: 790 CLRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEELPAVYTGLSL*LYH 969
CLRCEWMDL+DL K+ENTTPITSRVARLLLYGY+EGFDKIDLT+EELPAVYTGL LYH
Sbjct: 243 CLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKLYH 302
Query: 970 RELPEHYK 993
+ELPE+YK
Sbjct: 303 KELPENYK 310
>ref|NP_932158.1| nucleoside diphosphate-linked moiety X motif 6 isoform b [Homo
sapiens].
Length = 147
Score = 265 bits (676), Expect = 7e-71
Identities = 126/141 (89%), Positives = 133/141 (94%)
Frame = +1
Query: 571 MWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRL 750
MWKFPGGLSEP EDIGDTAVREVFEETGIKSEF S+LSIRQQHTNPGAFGKSDMYIICRL
Sbjct: 1 MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRL 60
Query: 751 KPRSFTINFCQHECLRCEWMDLSDLVKSENTTPITSRVARLLLYGYKEGFDKIDLTMEEL 930
KP SFTINFCQ ECLRCEWMDL+DL K+ENTTPITSRVARLLLYGY+EGFDKIDLT+EEL
Sbjct: 61 KPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVARLLLYGYREGFDKIDLTVEEL 120
Query: 931 PAVYTGLSL*LYHRELPEHYK 993
PAVYTGL LYH+ELPE+YK
Sbjct: 121 PAVYTGLFYKLYHKELPENYK 141
>ref|NP_694853.1| diphosphoinositol polyphosphate phosphohydrolase 3-alpha [Homo
sapiens].
Length = 164
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 520 ENTKKILVVQDRNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQH 699
E ++L+V ++ + W PGG EP E+ G AVREV+EE G+K + LL + +Q+
Sbjct: 28 EREDEVLLVSS-SRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGVFEQN 86
Query: 700 TNP 708
+P
Sbjct: 87 QDP 89
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,300,558
Number of extensions: 1196534
Number of successful extensions: 4013
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4004
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014440
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 706 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 706 bits (356), Expect = 0.0
Identities = 392/400 (98%), Gaps = 3/400 (0%)
Strand = Plus / Plus
Query: 616 ggagatacagcagttcgagaagtttttgaagagactggtataaagtcagaattcatgtcc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108488633 ggagatacagcagttcgagaagtttttgaagagactggtataaagtcagaattcatgtcc 108488692
Query: 676 ctcctgagtattcggcaacagcacaccaatcctggagcttttgggaagtcagatatgtat 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108488693 ctcctgagtattcggcaacagcacaccaatcctggagcttttgggaagtcagatatgtat 108488752
Query: 736 attatatgccgcttaaagccacgttcattcaccataaatttttgccagcatgaatgttta 795
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 108488753 attatatgccgcttaaagccacgttcattcatcataaatttttgccagcatgaatgttta 108488812
Query: 796 aggtgtgagtggatggatctcagtgacctggtcaagagtgaaaatacgactcccatcact 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108488813 aggtgtgagtggatggatctcagtgacctggtcaagagtgaaaatacgactcccatcact 108488872
Query: 856 agcagggttgctcggctgctgctctatgggtacaaagaagggtttgacaagattgatctg 915
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 108488873 agcagggttgctcggctgctgctctatgggtacaaggaagggtttgacaagattgatctg 108488932
Query: 916 accatggaagaacttccagcagtttacacaggcttgtccctat-aactctatcacaggga 974
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct: 108488933 accatggaagaacttccagcagtttacacaggcttgt-cctataaactctatcacaagga 108488991
Query: 975 actgccagaacattac-aaactgtgacaggaatggattaa 1013
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 108488992 actgccagacaattacaaaactgtgacaggaatggattaa 108489031
Score = 573 bits (289), Expect = e-161
Identities = 298/301 (99%)
Strand = Plus / Plus
Query: 1 ttcttcgttctaaggcaaacccgctgggtaatttggaagctgaggcttgaggccacgaga 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108446594 ttcttcgttctaacgcaaacccgctgggtaatttggaagctgaggcttgaggccacgaga 108446653
Query: 61 gcctgcgtggaaatgccgccgctgcggagcgggcgctgctggttcactgggctggctcgg 120
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 108446654 gcctgcgtggaaatgccgccgctgcggagcggccgctactggttcactgggctggctcgg 108446713
Query: 121 gtgcgccacgcaatgctttatgcagggctccgtggggcctcgagtttcctgggttgctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108446714 gtgcgccacgcaatgctttatgcagggctccgtggggcctcgagtttcctgggttgctct 108446773
Query: 181 cgggaccccccttccgtagctggcgagctgaggggtgagctggacagattcgggggcgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108446774 cgggaccccccttccgtagctggcgagctgaggggtgagctggacagattcgggggcgtc 108446833
Query: 241 tcggtgaaactagacgctctggaccgcctggacaccgtcgccttccagagagctttgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108446834 tcggtgaaactagacgctctggaccgcctggacaccgtcgccttccagagagctttgcag 108446893
Query: 301 g 301
|
Sbjct: 108446894 g 108446894
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 301 gctgcaatacagaaatggagatcggaaggtagggtagcggtatggctgcacattcccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108450808 gctgcaatacagaaatggagatcggaaggtagggtagcggtatggctgcacattcccatc 108450867
Query: 361 ttccaaagccgatttattgcccctgccgcttccctgggcttctgctttcaccacgcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108450868 ttccaaagccgatttattgcccctgccgcttccctgggcttctgctttcaccacgcagaa 108450927
Query: 421 tcagattcatctaccctgaccctgtggctgggaaaagggcccagcaggttaccaggatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108450928 tcagattcatctaccctgaccctgtggctgggaaaagggcccagcaggttaccaggatat 108450987
Query: 481 gctacacatcaagtgggagttgcagg 506
||||||||||||||||||||||||||
Sbjct: 108450988 gctacacatcaagtgggagttgcagg 108451013
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 562 ttgaaaaatatgtggaaatttccaggaggcctgtcggagcctggagaagatattgg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108484553 ttgaaaaatatgtggaaatttccaggaggcctgtcggagcctggagaagatattgg 108484608
Score = 75.8 bits (38), Expect = 4e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 503 caggagctgtattcgatgaaaatactnnnnnnntactggttgtacaagatcgaaataaa 561
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 108456449 caggagctgtattcgatgaaaatactaaaaaaatactggttgtacaagatcgaaataaa 108456507
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,230,942
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 5
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)