Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070360.1| hypothetical protein LOC533209 [Bos taurus]. 193 3e-49
Alignment gi|XP_002697422.1| PREDICTED: hypothetical protein [Bos taurus]. 106 3e-23
Alignment gi|XP_001253174.2| PREDICTED: hypothetical protein isoform 1 [B... 106 3e-23
Alignment gi|XP_001249591.1| PREDICTED: hypothetical protein [Bos taurus]. 102 5e-22
>ref|NP_001070360.1| hypothetical protein LOC533209 [Bos taurus].
Length = 141
Score = 193 bits (490), Expect = 3e-49
Identities = 100/141 (70%), Positives = 107/141 (75%)
Frame = +3
Query: 249 MPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXX 428
MPVAV+DIM+LLCSISE+RKM+AAVKHSGRGALVTGAVAF
Sbjct: 1 MPVAVEDIMRLLCSISEERKMKAAVKHSGRGALVTGAVAFVGGLVGGPPGLAVGGAVGGL 60
Query: 429 XXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXX 608
WMTSGQFKPVPQIIMELPPAEQQKLFNEATAI+RHLEWTDAVQLTMLVMGSE
Sbjct: 61 LGAWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIIRHLEWTDAVQLTMLVMGSEALQKQ 120
Query: 609 XXXXXXNYITKELRAEVQYND 671
NY+TKELRAEVQY+D
Sbjct: 121 LLAMLANYVTKELRAEVQYDD 141
>ref|XP_002697422.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 218
Score = 106 bits (265), Expect = 3e-23
Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Frame = +3
Query: 219 PSGKRQRLATMPVAVD---DIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXX 389
P G R+ A MP D DIM+LLCS+SE+RK++ A K+ G LV+G VA
Sbjct: 68 PRGSRKDGAYMPSIDDKVKDIMRLLCSVSEKRKIKVAFKYPLLGGLVSGTVATVGGLVGG 127
Query: 390 XXXXXXXXXXXXXXXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQL 569
W+ +G+FKPVPQIIMELP +Q++LF AI+R+ WT QL
Sbjct: 128 LPGIVFGGAVGGLLGSWVMNGKFKPVPQIIMELPADKQKRLFMNTIAILRNPSWTSVEQL 187
Query: 570 TMLVMGSEXXXXXXXXXXXNYITKELRAEVQ 662
TMLVMGS+ NY KEL E++
Sbjct: 188 TMLVMGSKTLQKQLVDMLNNYFIKELGLEMK 218
>ref|XP_001253174.2| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
Length = 218
Score = 106 bits (265), Expect = 3e-23
Identities = 63/151 (41%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Frame = +3
Query: 219 PSGKRQRLATMPVAVD---DIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXX 389
P G R+ A MP D DIM+LLCS+SE+RK++ A K+ G LV+G VA
Sbjct: 68 PRGSRKDGAYMPSIDDKVKDIMRLLCSVSEKRKIKVAFKYPLLGGLVSGTVATVGGLVGG 127
Query: 390 XXXXXXXXXXXXXXXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQL 569
W+ +G+FKPVPQIIMELP +Q++LF AI+R+ WT QL
Sbjct: 128 LPGIVFGGAVGGLLGSWVMNGKFKPVPQIIMELPADKQKRLFMNTIAILRNPSWTSVEQL 187
Query: 570 TMLVMGSEXXXXXXXXXXXNYITKELRAEVQ 662
TMLVMGS+ NY KEL E++
Sbjct: 188 TMLVMGSKTLQKQLVDMLNNYFIKELGLEMK 218
>ref|XP_001249591.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 140
Score = 102 bits (255), Expect = 5e-22
Identities = 56/133 (42%), Positives = 75/133 (56%)
Frame = +3
Query: 264 DDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXXXXXWM 443
+DIM+LLCS+SE+RK++ A K+ G LV+G VA W+
Sbjct: 8 EDIMRLLCSVSEKRKIKVAFKYPLLGGLVSGTVATVGGLVGGLPGIVFGGAVGGLLGSWV 67
Query: 444 TSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXXXXXXX 623
+G+FKPVPQIIMELP +Q++LF AI+R+ WT QLTMLVMGS+
Sbjct: 68 MNGKFKPVPQIIMELPADKQKRLFMNTIAILRNPSWTSVEQLTMLVMGSKTLQKQLVDML 127
Query: 624 XNYITKELRAEVQ 662
NY KEL E++
Sbjct: 128 NNYFIKELGLEMK 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,727,603
Number of extensions: 1530246
Number of successful extensions: 6336
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6302
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541725.1| PREDICTED: similar to CG3740-PA [Canis familiar... 181 1e-45
>ref|XP_541725.1| PREDICTED: similar to CG3740-PA [Canis familiaris].
Length = 141
Score = 181 bits (459), Expect = 1e-45
Identities = 90/141 (63%), Positives = 103/141 (73%)
Frame = +3
Query: 249 MPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXX 428
MP+ V+D+M+LLCSI+E+RKMQAAVKHSG+GALVTGAVAF
Sbjct: 1 MPLVVEDVMRLLCSIAEERKMQAAVKHSGKGALVTGAVAFLGGLVGGPPGLAVGGAVGGL 60
Query: 429 XXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXX 608
WMTSGQF+P+PQI+M+LPP+EQQKLFNE TAIVRHLEWTD VQLTMLVMGSE
Sbjct: 61 LGAWMTSGQFQPIPQILMQLPPSEQQKLFNEVTAIVRHLEWTDVVQLTMLVMGSEALKQQ 120
Query: 609 XXXXXXNYITKELRAEVQYND 671
NY+TKELRAEVQY D
Sbjct: 121 LVAMLVNYVTKELRAEVQYGD 141
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,797,471
Number of extensions: 1572982
Number of successful extensions: 6875
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6848
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355880.1| PREDICTED: uncharacterized protein C19orf12 ... 134 7e-32
>ref|XP_003355880.1| PREDICTED: uncharacterized protein C19orf12 homolog [Sus scrofa].
Length = 110
Score = 134 bits (338), Expect = 7e-32
Identities = 67/78 (85%), Positives = 67/78 (85%)
Frame = +3
Query: 438 WMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXXXXX 617
WMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSE
Sbjct: 33 WMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEALQQQLLA 92
Query: 618 XXXNYITKELRAEVQYND 671
NYITKELRAEVQYND
Sbjct: 93 MLANYITKELRAEVQYND 110
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,502,822
Number of extensions: 989613
Number of successful extensions: 4100
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4080
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001078854.1| hypothetical protein LOC72244 [Mus musculus]. 159 4e-39
Alignment gi|NP_082442.1| hypothetical protein LOC72244 [Mus musculus]. 159 4e-39
>ref|NP_001078854.1| hypothetical protein LOC72244 [Mus musculus].
Length = 141
Score = 159 bits (402), Expect = 4e-39
Identities = 79/141 (56%), Positives = 98/141 (69%)
Frame = +3
Query: 249 MPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXX 428
MP+ VDDIM+LLCSIS++RKM+AAVKHSG+GA+V GA+AF
Sbjct: 1 MPIMVDDIMRLLCSISQERKMKAAVKHSGKGAMVAGAMAFVGGLVGGPPGIAVGGTVGGL 60
Query: 429 XXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXX 608
WMTSGQFKPVPQI+MELPPAEQ+KL NEA AI+ +L+WTDAVQLT LVM ++
Sbjct: 61 LGAWMTSGQFKPVPQILMELPPAEQRKLVNEAMAIIGNLDWTDAVQLTALVMSNQAMQQR 120
Query: 609 XXXXXXNYITKELRAEVQYND 671
Y+TKEL+AE++Y D
Sbjct: 121 LLAMLTTYVTKELQAEIRYED 141
>ref|NP_082442.1| hypothetical protein LOC72244 [Mus musculus].
Length = 141
Score = 159 bits (402), Expect = 4e-39
Identities = 79/141 (56%), Positives = 98/141 (69%)
Frame = +3
Query: 249 MPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXX 428
MP+ VDDIM+LLCSIS++RKM+AAVKHSG+GA+V GA+AF
Sbjct: 1 MPIMVDDIMRLLCSISQERKMKAAVKHSGKGAMVAGAMAFVGGLVGGPPGIAVGGTVGGL 60
Query: 429 XXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXX 608
WMTSGQFKPVPQI+MELPPAEQ+KL NEA AI+ +L+WTDAVQLT LVM ++
Sbjct: 61 LGAWMTSGQFKPVPQILMELPPAEQRKLVNEAMAIIGNLDWTDAVQLTALVMSNQAMQQR 120
Query: 609 XXXXXXNYITKELRAEVQYND 671
Y+TKEL+AE++Y D
Sbjct: 121 LLAMLTTYVTKELQAEIRYED 141
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,784,521
Number of extensions: 1266470
Number of successful extensions: 5256
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5208
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026896.2| hypothetical protein LOC83636 isoform 1 [Hom... 181 1e-45
Alignment gi|NP_113636.2| hypothetical protein LOC83636 isoform 2 [Homo s... 176 3e-44
>ref|NP_001026896.2| hypothetical protein LOC83636 isoform 1 [Homo sapiens].
Length = 152
Score = 181 bits (459), Expect = 1e-45
Identities = 92/148 (62%), Positives = 106/148 (71%)
Frame = +3
Query: 228 KRQRLATMPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXX 407
K + ATM + V+DIMKLLCS+S +RKM+AAVKHSG+GALVTGA+AF
Sbjct: 5 KSHKPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAV 64
Query: 408 XXXXXXXXXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMG 587
WMTSGQFKPVPQI+MELPPAEQQ+LFNEA AI+RHLEWTDAVQLT LVMG
Sbjct: 65 GGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMG 124
Query: 588 SEXXXXXXXXXXXNYITKELRAEVQYND 671
SE NY+TKELRAE+QY+D
Sbjct: 125 SEALQQQLLAMLVNYVTKELRAEIQYDD 152
>ref|NP_113636.2| hypothetical protein LOC83636 isoform 2 [Homo sapiens].
Length = 141
Score = 176 bits (447), Expect = 3e-44
Identities = 89/141 (63%), Positives = 102/141 (72%)
Frame = +3
Query: 249 MPVAVDDIMKLLCSISEQRKMQAAVKHSGRGALVTGAVAFXXXXXXXXXXXXXXXXXXXX 428
M + V+DIMKLLCS+S +RKM+AAVKHSG+GALVTGA+AF
Sbjct: 1 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL 60
Query: 429 XXXWMTSGQFKPVPQIIMELPPAEQQKLFNEATAIVRHLEWTDAVQLTMLVMGSEXXXXX 608
WMTSGQFKPVPQI+MELPPAEQQ+LFNEA AI+RHLEWTDAVQLT LVMGSE
Sbjct: 61 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ 120
Query: 609 XXXXXXNYITKELRAEVQYND 671
NY+TKELRAE+QY+D
Sbjct: 121 LLAMLVNYVTKELRAEIQYDD 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,676,431
Number of extensions: 1529694
Number of successful extensions: 6202
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6174
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014441
(1115 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1366 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1366 bits (689), Expect = 0.0
Identities = 698/701 (99%)
Strand = Plus / Plus
Query: 415 ccgtcgggggtctgttaggtgcgtggatgacgagtggacagtttaagcccgttcctcaga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124287 ccgtcgggggtctgttaggtgcgtggatgacgagtggacagtttaagcccgttcctcaga 35124346
Query: 475 tcattatggagctgccccccgccgagcagcagaagctctttaatgaagccactgccatcg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124347 tcattatggagctgccccccgccgagcagcagaagctctttaatgaagccactgccatcg 35124406
Query: 535 tcaggcacctggagtggacggacgccgtgcagctgaccatgctggtcatgggcagcgagg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124407 tcaggcacctggagtggacggacgccgtgcagctgaccatgctggtcatgggcagcgagg 35124466
Query: 595 ccctgcagcagcagctcctggcaatgctggccaactacatcaccaaggagctccgggcag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124467 ccctgcagcagcagctcctggcaatgctggccaactacatcaccaaggagctccgggcag 35124526
Query: 655 aagtgcagtacaacgactaggtctccgctcggggcagcggggggtccatttcggtgactc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124527 aagtgcagtacaacgactaggtctccgctcggggcagcggggggtccatttcggtgactc 35124586
Query: 715 ctccaccttgtggaaggtgacccgggacttggggggcagcccaccctctccgtatatcgc 774
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 35124587 ctccaccttgtggaaggtgacccgggacctggggggcagcccaccctctccgtatatcgc 35124646
Query: 775 cctaaactggatcgaaatctctcgctggagaggcggctgctatgctgtgtcatgttccag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124647 cctaaactggatcgaaatctctcgctggagaggcggctgctatgctgtgtcatgttccag 35124706
Query: 835 aaattatttaaggggacgctgtgtttgtggccgcgtgcaccttccaccgagaagcgggtg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124707 aaattatttaaggggacgctgtgtttgtggccgcgtgcaccttccaccgagaagcgggtg 35124766
Query: 895 caccgcaaagctgtgcctgctgccacgtggaggccgttttctgaatccccccacctcgct 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124767 caccgcaaagctgtgcctgctgccacgtggaggccgttttctgaatccccccacctcgct 35124826
Query: 955 cacacggaagctgggggaacaacctcacgttcggccttctcatcttgtgaaaatgacgcc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35124827 cacacggaagctgggggaacaacctcacgttcggccttctcatcttgtgaaaatgacgcc 35124886
Query: 1015 tctccacgctcccgttgcaggaccagcaccttcctggggtccagggtctcaggacctcag 1074
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 35124887 tctccacgctcccgttgcaggaccagcaccttcttggggtccagggtctcaggacctcag 35124946
Query: 1075 agctggcccatgctgggatcatgtttacctctgaatgcccc 1115
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 35124947 agctggcccatgctggaatcatgtttacctctgaatgcccc 35124987
Score = 458 bits (231), Expect = e-126
Identities = 237/239 (99%)
Strand = Plus / Plus
Query: 1 gtggacaggccctgttgcaagagctcgaagacttgcctcactcgtgctgaactggtagag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 35173626 gtggacaggccctgttgcaagagctcgcagacttgcctcactcgtgctgaactggtagag 35173685
Query: 61 cacgtggccagggtggctccttaatcggcataaatcagaagggaatcagagagccgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173686 cacgtggccagggtggctccttaatcggcataaatcagaagggaatcagagagccgagaa 35173745
Query: 121 gccctttcatccactctgctgcttctgtctgcttagtaactgaatgctgcactgcttgct 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 35173746 gccctttcatccactctgctgcttctgtctgcttagtaactgaatgctgccctgcttgct 35173805
Query: 181 gtgggacagagaacttgtcacatgaccgggggtgcggtccatcgggcaaacgtcagagg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173806 gtgggacagagaacttgtcacatgaccgggggtgcggtccatcgggcaaacgtcagagg 35173864
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 237 aggctggccacgatgcctgtcgccgtggacgacatcatgaagctgctgtgctccatctcc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173971 aggctggccacgatgcctgtcgccgtggacgacatcatgaagctgctgtgctccatctcc 35174030
Query: 297 gagcagaggaaaatgcaggcggccgtcaagcactccgggaggggtgccctggtcaccggg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35174031 gagcagaggaaaatgcaggcggccgtcaagcactccgggaggggtgccctggtcaccggg 35174090
Query: 357 gccgtggccttcgttggtggtttgatgggcggtcccccaggactagctgtt 407
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35174091 gccgtggccttcgttggtggtttgatgggcggtcccccaggactagctgtt 35174141
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,952,317
Number of extensions: 474
Number of successful extensions: 474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 3
Length of query: 1115
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1094
Effective length of database: 2,808,413,156
Effective search space: 3072403992664
Effective search space used: 3072403992664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)