Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686597.1| PREDICTED: arginine/proline rich coiled-coil... 216 5e-56
Alignment gi|XP_589552.4| PREDICTED: arginine/proline rich coiled-coil 1-... 216 5e-56
>ref|XP_002686597.1| PREDICTED: arginine/proline rich coiled-coil 1-like [Bos taurus].
Length = 1017
Score = 216 bits (550), Expect = 5e-56
Identities = 113/128 (88%), Positives = 115/128 (89%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQW 558
IMKRTRKSEAAETKKQDRKEA NNSSP DPAKA+EARP+GLQKE EL PQEPQW
Sbjct: 897 IMKRTRKSEAAETKKQDRKEATANNSSP--DPAKAVEARPAGLQKE-----ELAPQEPQW 949
Query: 559 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 738
SLPNKES GSLVNGLQPLPAHQENGFS KGPSGDKSLGRTPEALLPF EAEAFLKKAVVQ
Sbjct: 950 SLPNKESSGSLVNGLQPLPAHQENGFSSKGPSGDKSLGRTPEALLPFAEAEAFLKKAVVQ 1009
Query: 739 PPQVTEVL 762
PPQVTEVL
Sbjct: 1010 PPQVTEVL 1017
>ref|XP_589552.4| PREDICTED: arginine/proline rich coiled-coil 1-like [Bos taurus].
Length = 1017
Score = 216 bits (550), Expect = 5e-56
Identities = 113/128 (88%), Positives = 115/128 (89%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQW 558
IMKRTRKSEAAETKKQDRKEA NNSSP DPAKA+EARP+GLQKE EL PQEPQW
Sbjct: 897 IMKRTRKSEAAETKKQDRKEATANNSSP--DPAKAVEARPAGLQKE-----ELAPQEPQW 949
Query: 559 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 738
SLPNKES GSLVNGLQPLPAHQENGFS KGPSGDKSLGRTPEALLPF EAEAFLKKAVVQ
Sbjct: 950 SLPNKESSGSLVNGLQPLPAHQENGFSSKGPSGDKSLGRTPEALLPFAEAEAFLKKAVVQ 1009
Query: 739 PPQVTEVL 762
PPQVTEVL
Sbjct: 1010 PPQVTEVL 1017
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,939,059
Number of extensions: 2143658
Number of successful extensions: 12305
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11659
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 509
Effective length of database: 14,107,870
Effective search space: 7180905830
Effective search space used: 7180905830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850632.1| PREDICTED: similar to proline arginine rich coi... 211 1e-54
>ref|XP_850632.1| PREDICTED: similar to proline arginine rich coiled coil 1 [Canis
familiaris].
Length = 962
Score = 211 bits (538), Expect = 1e-54
Identities = 110/129 (85%), Positives = 112/129 (86%), Gaps = 1/129 (0%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEA-KTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQ 555
IMKRTRKSEAAETKK DRKE K NN P DP KA E RP GLQKEAVQKE+ QEPQ
Sbjct: 836 IMKRTRKSEAAETKKPDRKETTKANNFGP--DPVKAREVRPLGLQKEAVQKEDPAAQEPQ 893
Query: 556 WSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVV 735
WSLP+KE PGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPF EAEAFLKKAVV
Sbjct: 894 WSLPSKEPPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFAEAEAFLKKAVV 953
Query: 736 QPPQVTEVL 762
QPPQVTEVL
Sbjct: 954 QPPQVTEVL 962
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,023,506
Number of extensions: 2090875
Number of successful extensions: 12317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11684
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 508
Effective length of database: 15,240,880
Effective search space: 7742367040
Effective search space used: 7742367040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127841.2| PREDICTED: MAP7 domain-containing protein 1 ... 247 1e-65
>ref|XP_003127841.2| PREDICTED: MAP7 domain-containing protein 1 [Sus scrofa].
Length = 803
Score = 247 bits (631), Expect = 1e-65
Identities = 125/128 (97%), Positives = 125/128 (97%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQW 558
IMKRTRKSEAAETKKQDRKEAKTNNSSP DP KAMEARPSGLQKEAVQKEELVPQEPQW
Sbjct: 678 IMKRTRKSEAAETKKQDRKEAKTNNSSP--DPVKAMEARPSGLQKEAVQKEELVPQEPQW 735
Query: 559 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 738
SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ
Sbjct: 736 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 795
Query: 739 PPQVTEVL 762
PPQVTEVL
Sbjct: 796 PPQVTEVL 803
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,071,273
Number of extensions: 1564989
Number of successful extensions: 7935
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7503
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 512
Effective length of database: 8,729,747
Effective search space: 4469630464
Effective search space used: 4469630464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139442.1| MAP7 domain-containing protein 1 isoform 2 [... 214 2e-55
Alignment gi|NP_659190.3| MAP7 domain-containing protein 1 isoform 1 [Mus... 214 2e-55
>ref|NP_001139442.1| MAP7 domain-containing protein 1 isoform 2 [Mus musculus].
Length = 774
Score = 214 bits (544), Expect = 2e-55
Identities = 107/128 (83%), Positives = 113/128 (88%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQW 558
IMKRTRKSEAAETKKQD KE NNS P DP KA+E RPSGLQK+++QKEEL PQEPQW
Sbjct: 649 IMKRTRKSEAAETKKQDAKETAANNSGP--DPVKAVETRPSGLQKDSMQKEELAPQEPQW 706
Query: 559 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 738
SLP+KE PGSLVNGLQPLPAHQENGFSPKG +GDKSLGRT E LLPF EAEAFLKKAVVQ
Sbjct: 707 SLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGDKSLGRTAEGLLPFAEAEAFLKKAVVQ 766
Query: 739 PPQVTEVL 762
PPQVTEVL
Sbjct: 767 PPQVTEVL 774
>ref|NP_659190.3| MAP7 domain-containing protein 1 isoform 1 [Mus musculus].
Length = 846
Score = 214 bits (544), Expect = 2e-55
Identities = 107/128 (83%), Positives = 113/128 (88%)
Frame = +1
Query: 379 IMKRTRKSEAAETKKQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQW 558
IMKRTRKSEAAETKKQD KE NNS P DP KA+E RPSGLQK+++QKEEL PQEPQW
Sbjct: 721 IMKRTRKSEAAETKKQDAKETAANNSGP--DPVKAVETRPSGLQKDSMQKEELAPQEPQW 778
Query: 559 SLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVVQ 738
SLP+KE PGSLVNGLQPLPAHQENGFSPKG +GDKSLGRT E LLPF EAEAFLKKAVVQ
Sbjct: 779 SLPSKEMPGSLVNGLQPLPAHQENGFSPKGTAGDKSLGRTAEGLLPFAEAEAFLKKAVVQ 838
Query: 739 PPQVTEVL 762
PPQVTEVL
Sbjct: 839 PPQVTEVL 846
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,199,713
Number of extensions: 1666824
Number of successful extensions: 9059
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8618
Number of HSP's successfully gapped: 2
Length of query: 617
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 510
Effective length of database: 12,403,707
Effective search space: 6325890570
Effective search space used: 6325890570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060537.3| MAP7 domain-containing protein 1 [Homo sapiens]. 199 9e-51
>ref|NP_060537.3| MAP7 domain-containing protein 1 [Homo sapiens].
Length = 841
Score = 199 bits (505), Expect = 9e-51
Identities = 104/129 (80%), Positives = 109/129 (84%), Gaps = 1/129 (0%)
Frame = +1
Query: 379 IMKRTRKSEAAETK-KQDRKEAKTNNSSPVIDPAKAMEARPSGLQKEAVQKEELVPQEPQ 555
IMKRTRKSE +ETK KQD KEA N SSP +P KA+EAR GLQKEAVQKEE +PQEPQ
Sbjct: 715 IMKRTRKSEVSETKQKQDSKEANANGSSP--EPVKAVEARSPGLQKEAVQKEEPIPQEPQ 772
Query: 556 WSLPNKESPGSLVNGLQPLPAHQENGFSPKGPSGDKSLGRTPEALLPFPEAEAFLKKAVV 735
WSLP+KE P SLVNGLQPLPAHQENGFS GPSGDKSL RTPE LLPF EAEAFLKKAVV
Sbjct: 773 WSLPSKELPASLVNGLQPLPAHQENGFSTNGPSGDKSLSRTPETLLPFAEAEAFLKKAVV 832
Query: 736 QPPQVTEVL 762
Q PQVTEVL
Sbjct: 833 QSPQVTEVL 841
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,542,588
Number of extensions: 2020804
Number of successful extensions: 11985
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11403
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 508
Effective length of database: 14,704,088
Effective search space: 7469676704
Effective search space used: 7469676704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014476
(1851 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118993.1| Sus scrofa unplaced genomic scaffold ChrUScaf4131 1467 0.0
Sscrofa_Chr06 1467 0.0
>gb|JH118993.1| Sus scrofa unplaced genomic scaffold ChrUScaf4131
Length = 128632
Score = 1467 bits (740), Expect = 0.0
Identities = 747/748 (99%), Gaps = 1/748 (0%)
Strand = Plus / Minus
Query: 752 cagaagtcctttaaggggttgccttggatccaggcacagctatgagggctcctctgcatc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89387 cagaagtcctttaaggggttgccttggatccaggcacagctatgagggctcctctgcatc 89328
Query: 812 atctgccaggatgtctggaagagaaagagacagaacaaagccggaagtggcctgggcccc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89327 atctgccaggatgtctggaagagaaagagacagaacaaagccggaagtggcctgggcccc 89268
Query: 872 tgggggttgggtcctctctgttatttttaatctgcaccttatagactgatgtctctttgg 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89267 tgggggttgggtcctctctgttatttttaatctgcaccttatagactgatgtctctttgg 89208
Query: 932 ctggagccagaccctgcccctcagtgcattcgtgtgctcacacgcgcggacacccgcata 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89207 ctggagccagaccctgcccctcagtgcattcgtgtgctcacacgcgcggacacccgcata 89148
Query: 992 cacacacatacactcacagcctctctggcctcctcccatggggaagggccacctgtagta 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89147 cacacacatacactcacagcctctctggcctcctcccatggggaagggccacctgtagta 89088
Query: 1052 tttgccttggtttgggcggggtacagtggatgtgaatactgtaaatagctcgtgctcaga 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89087 tttgccttggtttgggcggggtacagtggatgtgaatactgtaaatagctcgtgctcaga 89028
Query: 1112 ctcctctgcgtggagggggcgggtgcaggaggcagaccctcccaagactccctggggaga 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89027 ctcctctgcgtggagggggcgggtgcaggaggcagaccctcccaagactccctggggaga 88968
Query: 1172 tcttcctccctctatttaactgtatctgagggggaacccaggtctggggatgggggcacc 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88967 tcttcctccctctatttaactgtatctgagggggaacccaggtctggggatgggggcacc 88908
Query: 1232 ttgggccacaggatactggttgctttaggggtacccgtgcccccctgccctcgcctggaa 1291
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 88907 ttgggccacaggatactggttgctttaggggtacccgtgc-cccctgccctcgcctggaa 88849
Query: 1292 tcagtgttattgcatccgatcaaatttctccagaaataaagtgagaataattctgccagt 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88848 tcagtgttattgcatccgatcaaatttctccagaaataaagtgagaataattctgccagt 88789
Query: 1352 cctgtctatccctggggctggttggggacagtggcctcttgagttcccagaagaacttga 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88788 cctgtctatccctggggctggttggggacagtggcctcttgagttcccagaagaacttga 88729
Query: 1412 ggagccaggacctagggataaccatccatagctggtaccagccctagacatcctgcctgt 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88728 ggagccaggacctagggataaccatccatagctggtaccagccctagacatcctgcctgt 88669
Query: 1472 gcttttccattttgtcattcattcatgt 1499
||||||||||||||||||||||||||||
Sbjct: 88668 gcttttccattttgtcattcattcatgt 88641
Score = 371 bits (187), Expect = e-100
Identities = 196/198 (98%), Gaps = 2/198 (1%)
Strand = Plus / Minus
Query: 559 agcctgccaaacaaggagtcgccagggtccctggtgaacggcctgcagcctctcccagcg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89743 agcctgccaaacaaggagtcgccagggtccctggtgaacggcctgcagcctctcccagcg 89684
Query: 619 ca--ccaggagaatggcttctcccctaaggggccctctggggacaagagtctgggccgaa 676
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89683 canaccaggagaatggcttctcccctaaggggccctctggggacaagagtctgggccgaa 89624
Query: 677 cgccagaggctctcctgcccttcccagaggcagaggccttcctcaagaaagcagtggtgc 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89623 cgccagaggctctcctgcccttcccagaggcagaggccttcctcaagaaagcagtggtgc 89564
Query: 737 agcctccccaggtcacag 754
||||||||||||||||||
Sbjct: 89563 agcctccccaggtcacag 89546
Score = 297 bits (150), Expect = 1e-77
Identities = 208/224 (92%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 1622 catcataagcactgagatgcccctttctcatcccatacagaatcctgatttctgt-cang 1680
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |
Sbjct: 88518 catcataagcactgagatgccccttcttcatcccatacagaatcctgatt-ctgttcagg 88460
Query: 1681 tggctttcttccctctggaccccaccctgtgcttcagcagaagtggatcctaaagtcagg 1740
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 88459 tggctttcttcctcctggaccccaccctgtgcttcagcagaggtggatcctaagtccagg 88400
Query: 1741 ggtgaatcatngatataatgaaccccaaatgatggtcccatgtcccttgcaagtgattgg 1800
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 88399 ggtgaatcatgattataatgaacccaaaatgatggtcccatgtcccttgcaagtgattgg 88340
Query: 1801 ntttaggtgtgggtacataatatacttgcagccagcagatacaa 1844
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88339 -tttaggtgtgggtacataatatacttgcagccagcagatacaa 88297
Score = 194 bits (98), Expect = 1e-46
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 459 cccagtgatagaccctgcgaaagccatggaggctcgaccctcagggctgcagaaggaggc 518
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89955 cccagtgatagaccctgtgaaagccatggaggctcgaccctcagggctgcagaaggaggc 89896
Query: 519 tgtacagaaagaggagctggtcccccaggagcctcagtggag 560
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89895 tgtacagaaagaggagctggtcccccaggagcctcagtggag 89854
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 26 aagaggccactcggctcctggctgagaagcggcgccaggcccgggagcagcgggagcgcg 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91249 aagaggccactcggctcctggctgagaagcggcgccaggcccgggagcagcgggagcgcg 91190
Query: 86 aggaacaggagcggagactgcaggcggaaagggacaa 122
|||||||||||||||||||||||||||||||||||||
Sbjct: 91189 aggaacaggagcggagactgcaggcggaaagggacaa 91153
Score = 123 bits (62), Expect = 4e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 305 agcgtctggagcgggagaagcacttccagcgggaggagcaagagcggcaagagcgcaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90727 agcgtctggagcgggagaagcacttccagcgggaggagcaagagcggcaagagcgcaaaa 90668
Query: 365 ag 366
||
Sbjct: 90667 ag 90666
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 365 agcgcctggaggagatcatgaagaggactcgaaagtcagaagctgctgaaaccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90420 agcgcctggaggagatcatgaagaggactcgaaagtcagaagctgctgaaaccaag 90365
>Sscrofa_Chr06
|| Length = 157765593
Score = 1467 bits (740), Expect = 0.0
Identities = 747/748 (99%), Gaps = 1/748 (0%)
Strand = Plus / Minus
Query: 752 cagaagtcctttaaggggttgccttggatccaggcacagctatgagggctcctctgcatc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630645 cagaagtcctttaaggggttgccttggatccaggcacagctatgagggctcctctgcatc 85630586
Query: 812 atctgccaggatgtctggaagagaaagagacagaacaaagccggaagtggcctgggcccc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630585 atctgccaggatgtctggaagagaaagagacagaacaaagccggaagtggcctgggcccc 85630526
Query: 872 tgggggttgggtcctctctgttatttttaatctgcaccttatagactgatgtctctttgg 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630525 tgggggttgggtcctctctgttatttttaatctgcaccttatagactgatgtctctttgg 85630466
Query: 932 ctggagccagaccctgcccctcagtgcattcgtgtgctcacacgcgcggacacccgcata 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630465 ctggagccagaccctgcccctcagtgcattcgtgtgctcacacgcgcggacacccgcata 85630406
Query: 992 cacacacatacactcacagcctctctggcctcctcccatggggaagggccacctgtagta 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630405 cacacacatacactcacagcctctctggcctcctcccatggggaagggccacctgtagta 85630346
Query: 1052 tttgccttggtttgggcggggtacagtggatgtgaatactgtaaatagctcgtgctcaga 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630345 tttgccttggtttgggcggggtacagtggatgtgaatactgtaaatagctcgtgctcaga 85630286
Query: 1112 ctcctctgcgtggagggggcgggtgcaggaggcagaccctcccaagactccctggggaga 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630285 ctcctctgcgtggagggggcgggtgcaggaggcagaccctcccaagactccctggggaga 85630226
Query: 1172 tcttcctccctctatttaactgtatctgagggggaacccaggtctggggatgggggcacc 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630225 tcttcctccctctatttaactgtatctgagggggaacccaggtctggggatgggggcacc 85630166
Query: 1232 ttgggccacaggatactggttgctttaggggtacccgtgcccccctgccctcgcctggaa 1291
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 85630165 ttgggccacaggatactggttgctttaggggtacccgtgc-cccctgccctcgcctggaa 85630107
Query: 1292 tcagtgttattgcatccgatcaaatttctccagaaataaagtgagaataattctgccagt 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630106 tcagtgttattgcatccgatcaaatttctccagaaataaagtgagaataattctgccagt 85630047
Query: 1352 cctgtctatccctggggctggttggggacagtggcctcttgagttcccagaagaacttga 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630046 cctgtctatccctggggctggttggggacagtggcctcttgagttcccagaagaacttga 85629987
Query: 1412 ggagccaggacctagggataaccatccatagctggtaccagccctagacatcctgcctgt 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85629986 ggagccaggacctagggataaccatccatagctggtaccagccctagacatcctgcctgt 85629927
Query: 1472 gcttttccattttgtcattcattcatgt 1499
||||||||||||||||||||||||||||
Sbjct: 85629926 gcttttccattttgtcattcattcatgt 85629899
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 559 agcctgccaaacaaggagtcgccagggtccctggtgaacggcctgcagcctctcccagcg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630999 agcctgccaaacaaggagtcgccagggtccctggtgaacggcctgcagcctctcccagcg 85630940
Query: 619 caccaggagaatggcttctcccctaaggggccctctggggacaagagtctgggccgaacg 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630939 caccaggagaatggcttctcccctaaggggccctctggggacaagagtctgggccgaacg 85630880
Query: 679 ccagaggctctcctgcccttcccagaggcagaggccttcctcaagaaagcagtggtgcag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85630879 ccagaggctctcctgcccttcccagaggcagaggccttcctcaagaaagcagtggtgcag 85630820
Query: 739 cctccccaggtcacag 754
||||||||||||||||
Sbjct: 85630819 cctccccaggtcacag 85630804
Score = 297 bits (150), Expect = 1e-77
Identities = 208/224 (92%), Gaps = 3/224 (1%)
Strand = Plus / Minus
Query: 1622 catcataagcactgagatgcccctttctcatcccatacagaatcctgatttctgt-cang 1680
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |
Sbjct: 85629776 catcataagcactgagatgccccttcttcatcccatacagaatcctgatt-ctgttcagg 85629718
Query: 1681 tggctttcttccctctggaccccaccctgtgcttcagcagaagtggatcctaaagtcagg 1740
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 85629717 tggctttcttcctcctggaccccaccctgtgcttcagcagaggtggatcctaagtccagg 85629658
Query: 1741 ggtgaatcatngatataatgaaccccaaatgatggtcccatgtcccttgcaagtgattgg 1800
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 85629657 ggtgaatcatgattataatgaacccaaaatgatggtcccatgtcccttgcaagtgattgg 85629598
Query: 1801 ntttaggtgtgggtacataatatacttgcagccagcagatacaa 1844
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85629597 -tttaggtgtgggtacataatatacttgcagccagcagatacaa 85629555
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 3 catggctggcaccacagaccgcgaagaggccactcggctcctggctgagaagcggcgcca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85632395 catggctggcaccacagaccgcgaagaggccactcggctcctggctgagaagcggcgcca 85632336
Query: 63 ggcccgggagcagcgggagcgcgaggaacaggagcggagactgcaggcggaaagggacaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85632335 ggcccgggagcagcgggagcgcgaggaacaggagcggagactgcaggcggaaagggacaa 85632276
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 258 gcagaaagaggaggccgaagctcgatcccgagaggaagcggagcggcagcgtctggagcg 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631950 gcagaaagaggaggccgaagctcgatcccgagaggaagcggagcggcagcgtctggagcg 85631891
Query: 318 ggagaagcacttccagcgggaggagcaagagcggcaagagcgcaaaaag 366
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631890 ggagaagcacttccagcgggaggagcaagagcggcaagagcgcaaaaag 85631842
Score = 194 bits (98), Expect = 1e-46
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 459 cccagtgatagaccctgcgaaagccatggaggctcgaccctcagggctgcagaaggaggc 518
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631211 cccagtgatagaccctgtgaaagccatggaggctcgaccctcagggctgcagaaggaggc 85631152
Query: 519 tgtacagaaagaggagctggtcccccaggagcctcagtggag 560
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631151 tgtacagaaagaggagctggtcccccaggagcctcagtggag 85631110
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 365 agcgcctggaggagatcatgaagaggactcgaaagtcagaagctgctgaaaccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631596 agcgcctggaggagatcatgaagaggactcgaaagtcagaagctgctgaaaccaag 85631541
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 419 agaagcaggacagaaaggaggccaagaccaacaattccagcccag 463
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85631333 agaagcaggacagaaaggaggccaagaccaacaattccagcccag 85631289
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,143,046
Number of extensions: 858
Number of successful extensions: 858
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 15
Length of query: 1851
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1829
Effective length of database: 2,808,408,574
Effective search space: 5136579281846
Effective search space used: 5136579281846
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)