Animal-Genome cDNA 20110601C-014490


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029605.1| F-box only protein 6 [Bos taurus].                394   e-112
Alignment   gi|NP_001094765.1| F-box only protein 44 [Bos taurus].               299   8e-84
Alignment   gi|NP_001069037.1| F-box only protein 2 [Bos taurus].                199   4e-52
Alignment   gi|XP_002695088.1| PREDICTED: F-box protein 27-like [Bos taurus].     92   9e-19
Alignment   gi|XP_584814.3| PREDICTED: F-box protein 27-like [Bos taurus].        92   9e-19
Alignment   gi|XP_002695089.1| PREDICTED: F-box protein-like [Bos taurus].        89   7e-18
Alignment   gi|XP_001256098.1| PREDICTED: F-box protein-like [Bos taurus].        89   7e-18
Alignment   gi|XP_002688187.1| PREDICTED: F-box protein 27-like [Bos taurus].     84   2e-16
Alignment   gi|XP_608753.3| PREDICTED: F-box protein 27-like [Bos taurus].        83   4e-16
Alignment   gi|XP_002695093.1| PREDICTED: F-box protein 27-like [Bos taurus].     74   2e-13

>ref|NP_001029605.1| F-box only protein 6 [Bos taurus].
          Length = 265

 Score =  394 bits (1012), Expect(2) = e-112
 Identities = 182/206 (88%), Positives = 192/206 (93%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MALVSINQLPE+ILLEVF H+PARQLL NCRPVC LWRDLIDLV+LWKRKCL EG+V ED
Sbjct: 1   MALVSINQLPENILLEVFMHVPARQLLRNCRPVCCLWRDLIDLVSLWKRKCLREGYVTED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPV+DWKVFYFLCSLRRNLLRNPCAE+DM SWKIDSNGG+ WKVESLPGAHGT FPDS
Sbjct: 61  WDQPVSDWKVFYFLCSLRRNLLRNPCAEEDMKSWKIDSNGGDQWKVESLPGAHGTGFPDS 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           KVKKYFVTSY MCLKSQ+IDLKAEGYWEELLDKFRPDIVVKDWFA RADCGCTY IRVQL
Sbjct: 121 KVKKYFVTSYDMCLKSQIIDLKAEGYWEELLDKFRPDIVVKDWFAPRADCGCTYQIRVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQW 903
            SADY+VLASFEPP VTI QWNDA+W
Sbjct: 181 ASADYLVLASFEPPPVTIHQWNDAKW 206



 Score = 30.0 bits (66), Expect(2) = e-112
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSDYPPGV 220


>ref|NP_001094765.1| F-box only protein 44 [Bos taurus].
          Length = 255

 Score =  299 bits (766), Expect(2) = 8e-84
 Identities = 140/208 (67%), Positives = 165/208 (79%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+FTH+PARQLLL CR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFTHVPARQLLLRCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWKVFYFL SLRRNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKVFYFLRSLRRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           +VKKYFVTSY  CLKSQ++DLKAEGYWEEL+D  RPDI VKDWFAAR DCG  Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
            S+ +  L +F+P    I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPAMIQQKSDAKWRE 208



 Score = 30.4 bits (67), Expect(2) = 8e-84
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220


>ref|NP_001069037.1| F-box only protein 2 [Bos taurus].
          Length = 297

 Score =  199 bits (505), Expect(2) = 4e-52
 Identities = 99/200 (49%), Positives = 128/200 (64%), Gaps = 2/200 (1%)
 Frame = +1

Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPV 480
           +++LPE +LL V   LPA QL+  CR VC  W++L+D   LW  KC  EG V +D  +  
Sbjct: 48  LDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPQDGPEDE 107

Query: 481 AD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF-PDSKVK 654
            D W+ FYFL   RRNLLRNPC E+D+  W    +GG+ W+VE LPG  G +F  D  VK
Sbjct: 108 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEFIHDESVK 167

Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
           KYF +S+  C K+Q+IDL+AEGYWEELLD  +P IVVKDW++ R D GC Y + V+L S 
Sbjct: 168 KYFASSFEWCRKAQIIDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSE 227

Query: 835 DYIVLASFEPPAVTIPQWND 894
              VLA F    V +P  +D
Sbjct: 228 HEDVLAEFNSGQVAVPADSD 247



 Score = 25.0 bits (53), Expect(2) = 4e-52
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           E+SHTF+ Y PGV
Sbjct: 253 EISHTFTDYGPGV 265


>ref|XP_002695088.1| PREDICTED: F-box protein 27-like [Bos taurus].
          Length = 283

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           ++ +N+LP  +L EV ++LP   LL  CRPVC  WRD++D   LW+            W 
Sbjct: 6   VLDLNRLPNELLQEVLSYLPPSTLLQQCRPVCRRWRDVVDGWDLWRSIL--------PWK 57

Query: 472 QPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAH 624
            P   W V             C L R   R P   + +   +     G   ++    GA 
Sbjct: 58  HPDL-WPVIRTCLPPADDPGPCILGRFCERRPIGRNLLGDSQSSRGLGFLNRMVLTAGAA 116

Query: 625 GTDFPDSKV-------KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAA 783
                +++V       +++F+++Y  C + Q++DL+ EG W ELLD    +I V DW+  
Sbjct: 117 RGAEENARVGPLMAYRQRWFLSTYRWCQQKQVLDLEKEGLWRELLDSGNIEICVSDWWFD 176

Query: 784 RADCGCTYHIRVQLGSADYIVLASFEP 864
             D  C Y + VQL  A+ +VL  F P
Sbjct: 177 DRDADCLYRLIVQLLDANQVVLHHFSP 203


>ref|XP_584814.3| PREDICTED: F-box protein 27-like [Bos taurus].
          Length = 283

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           ++ +N+LP  +L EV ++LP   LL  CRPVC  WRD++D   LW+            W 
Sbjct: 6   VLDLNRLPNELLQEVLSYLPPSTLLQQCRPVCRRWRDVVDGWDLWRSIL--------PWK 57

Query: 472 QPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAH 624
            P   W V             C L R   R P   + +   +     G   ++    GA 
Sbjct: 58  HPDL-WPVIRTCLPPADDPGPCILGRFCERRPIGRNLLGDSQSSRGLGFLNRMVLTAGAA 116

Query: 625 GTDFPDSKV-------KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAA 783
                +++V       +++F+++Y  C + Q++DL+ EG W ELLD    +I V DW+  
Sbjct: 117 RGAEENARVGPLMAYRQRWFLSTYRWCQQKQVLDLEKEGLWRELLDSGNIEICVSDWWFD 176

Query: 784 RADCGCTYHIRVQLGSADYIVLASFEP 864
             D  C Y + VQL  A+ +VL  F P
Sbjct: 177 DRDADCLYRLIVQLLDANQVVLHHFSP 203


>ref|XP_002695089.1| PREDICTED: F-box protein-like [Bos taurus].
          Length = 281

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 15/216 (6%)
 Frame = +1

Query: 262 VCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCL 441
           VC L          NQLP  +L EV ++LP R L+ +CR VC  WRD++D   LW+    
Sbjct: 13  VCSLKPEPKETPGPNQLPIEMLREVLSYLPPRMLIRHCRLVCRRWRDVVDDWDLWRSIL- 71

Query: 442 CEGFVAEDWDQPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNH 594
                   W  P   W V             C L R   R P   + + S +    G   
Sbjct: 72  -------PWKHPNL-WPVIRTCLPPADNPGPCILGRFCERRPIGRNLLRSPRGLGGGSQK 123

Query: 595 WKVESLPGAHGTD------FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPD 756
           W V S       +       P + ++  F++SY    K Q++DL+ EG W ELLD    +
Sbjct: 124 WTVLSREDDWTEEKENLEVMPRAYMQTSFLSSYRRYHKKQVLDLEKEGLWRELLDSGNIE 183

Query: 757 IVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
           I V DW   R    C Y + V L  A+  +L  F P
Sbjct: 184 ICVSDWRNDRQGIDCIYQLTVHLLDANQAILDHFSP 219


>ref|XP_001256098.1| PREDICTED: F-box protein-like [Bos taurus].
          Length = 281

 Score = 88.6 bits (218), Expect = 7e-18
 Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 15/216 (6%)
 Frame = +1

Query: 262 VCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCL 441
           VC L          NQLP  +L EV ++LP R L+ +CR VC  WRD++D   LW+    
Sbjct: 13  VCSLKPEPKETPGPNQLPIEMLREVLSYLPPRMLIRHCRLVCRRWRDVVDDWDLWRSIL- 71

Query: 442 CEGFVAEDWDQPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNH 594
                   W  P   W V             C L R   R P   + + S +    G   
Sbjct: 72  -------PWKHPNL-WPVIRTCLPPADNPGPCILGRFCERRPIGRNLLRSPRGLGGGSQK 123

Query: 595 WKVESLPGAHGTD------FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPD 756
           W V S       +       P + ++  F++SY    K Q++DL+ EG W ELLD    +
Sbjct: 124 WTVLSREDDWTEEKENLEVMPRAYMQTSFLSSYRRYHKKQVLDLEKEGLWRELLDSGNIE 183

Query: 757 IVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
           I V DW   R    C Y + V L  A+  +L  F P
Sbjct: 184 ICVSDWRNDRQGIDCIYQLTVHLLDANQAILDHFSP 219


>ref|XP_002688187.1| PREDICTED: F-box protein 27-like [Bos taurus].
          Length = 304

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 72/230 (31%), Positives = 96/230 (41%), Gaps = 12/230 (5%)
 Frame = +1

Query: 211 PGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCS 390
           PG  +  +     L ACV            ++QLP  +LLE+ ++LP   LL  CR VC 
Sbjct: 22  PGEETTGASASQGLPACVPASDPEPKEAPGLSQLPIEMLLEMLSYLPTSMLLGQCRHVCW 81

Query: 391 LWRDLIDL------------VTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLR 534
            WR L+D             V LW     C     +D  +P    + F     L RNL  
Sbjct: 82  YWRYLVDTRAVWLSILPYSHVKLWPVFQTCLPLDNDDNSRPCLLGR-FCERRPLGRNLYP 140

Query: 535 NPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKA 714
           NP   D  + W+   N  +  + ES    H     DS     F   Y  C K Q +DL+ 
Sbjct: 141 NPHGIDAFLPWRT-INCTSWREEESWEEDHRLVPEDS-----FQPFYRWCYKKQALDLEK 194

Query: 715 EGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
           EG W ELLD  + +I V  W+A +    C Y + VQL +A    L  F P
Sbjct: 195 EGLWPELLDSGKIEICVSAWWANQEASVCLYELIVQLLNAKQAKLHHFSP 244


>ref|XP_608753.3| PREDICTED: F-box protein 27-like [Bos taurus].
          Length = 304

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 72/230 (31%), Positives = 95/230 (41%), Gaps = 12/230 (5%)
 Frame = +1

Query: 211 PGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCS 390
           PG  +  +     L ACV            ++QLP  +LLE+ ++LP   LL  CR VC 
Sbjct: 22  PGEETTGASASQGLPACVPASDPEPKEAPGLSQLPIEMLLEMLSYLPTSMLLGQCRHVCW 81

Query: 391 LWRDLIDL------------VTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLR 534
            WR L+D             V LW     C     +D  +P    + F     L RNL  
Sbjct: 82  YWRYLVDTRAVWLSILPYSHVKLWPVFQTCLPLDNDDNSRPCLLGR-FCERRPLGRNLYP 140

Query: 535 NPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKA 714
           NP   D  + W    N  +  + ES    H     DS     F   Y  C K Q +DL+ 
Sbjct: 141 NPHGIDAFLPWST-INCTSWREEESWEEDHRLVPEDS-----FQPFYRWCYKKQALDLEK 194

Query: 715 EGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
           EG W ELLD  + +I V  W+A +    C Y + VQL +A    L  F P
Sbjct: 195 EGLWPELLDSGKIEICVSAWWANQEASVCLYELIVQLLNAKQAKLHHFSP 244


>ref|XP_002695093.1| PREDICTED: F-box protein 27-like [Bos taurus].
          Length = 295

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 60/202 (29%), Positives = 83/202 (41%), Gaps = 14/202 (6%)
 Frame = +1

Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWK--------------RKC 438
           ++QLP  +LLEV ++LP   LL  CR VC  WR L+D   +W               R C
Sbjct: 43  LSQLPIEMLLEVLSYLPTSVLLGQCRHVCWYWRYLVDTRAVWLSILPYSHAKLWPVFRTC 102

Query: 439 LCEGFVAEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPG 618
           L       D D        F     L RNL  N    D  + W+  +     W+ E    
Sbjct: 103 LPPD---NDDDPRPCLLGRFCERRPLGRNLYPNRHGIDAFLPWR--TINCTSWRQEESWE 157

Query: 619 AHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCG 798
                 P+   + +    Y  C K Q++DL+ EG W ELLD  + +I +  W+A +    
Sbjct: 158 EDRRLVPEDPFQPF----YRWCYKKQVLDLEKEGLWPELLDSGKIEICISAWWADQEASV 213

Query: 799 CTYHIRVQLGSADYIVLASFEP 864
           C Y + VQL  A    L    P
Sbjct: 214 CLYELIVQLLDAKQARLHHLSP 235


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,220,435
Number of extensions: 1081735
Number of successful extensions: 4034
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4001
Number of HSP's successfully gapped: 26
Length of query: 314
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,306,398
Effective search space: 3032956376
Effective search space used: 3032956376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014490

Animal-Genome cDNA 20110601C-014490


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_544569.1| PREDICTED: similar to F-box only protein 6 (F-b...   402   e-114
Alignment   gi|XP_535406.2| PREDICTED: similar to F-box only protein 2 [Can...   195   1e-50
Alignment   gi|XP_544570.2| PREDICTED: similar to F-box protein 44 isoform ...   165   5e-41
Alignment   gi|XP_541630.2| PREDICTED: similar to F-box protein FBG4 isofor...   129   4e-30
Alignment   gi|XP_541629.2| PREDICTED: similar to F-box protein 27 [Canis f...   128   9e-30
Alignment   gi|XP_855369.1| PREDICTED: similar to nonspecific cytotoxic cel...    64   9e-11

>ref|XP_544569.1| PREDICTED: similar to F-box only protein 6 (F-box/G-domain protein
           2) [Canis familiaris].
          Length = 315

 Score =  402 bits (1033), Expect(2) = e-114
 Identities = 188/237 (79%), Positives = 203/237 (85%)
 Frame = +1

Query: 193 WYLQRKPGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLN 372
           W L+ +     + SC        VC  P  AMALVSIN+LPESILLEVFTH+PARQLLL 
Sbjct: 5   WVLRPRSRVGVITSCP----HRPVCAPPAPAMALVSINELPESILLEVFTHIPARQLLLR 60

Query: 373 CRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLRNPCAED 552
           CRPVCSLWRDLIDLVTLWKRKCL EGF+ EDWDQPVADWK+F+FLCSLRRNLLRNPCAE+
Sbjct: 61  CRPVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVADWKIFFFLCSLRRNLLRNPCAEE 120

Query: 553 DMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEE 732
           DM SW+ID NGG+ WKVESLPG HGTDFPDSKVKKYFVTSY MCLKSQL+DLKAEGYWEE
Sbjct: 121 DMKSWQIDCNGGDEWKVESLPGDHGTDFPDSKVKKYFVTSYEMCLKSQLVDLKAEGYWEE 180

Query: 733 LLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWNDAQW 903
           LLD  RP+IVVKDWFAARADCGCTYHIRVQL SADYIVLASFEPP VT+ QWN A+W
Sbjct: 181 LLDTVRPEIVVKDWFAARADCGCTYHIRVQLASADYIVLASFEPPPVTVDQWNSAKW 237



 Score = 30.0 bits (66), Expect(2) = e-114
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 239 EVSHTFSDYPPGV 251


>ref|XP_535406.2| PREDICTED: similar to F-box only protein 2 [Canis familiaris].
          Length = 506

 Score =  195 bits (496), Expect(2) = 1e-50
 Identities = 101/210 (48%), Positives = 130/210 (61%), Gaps = 3/210 (1%)
 Frame = +1

Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
           A A   +++LPE +LL V   LPA QL+  CR VC  W++L+D   LW  KC  EG V E
Sbjct: 251 AGAAAHLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGGPLWLLKCQQEGLVPE 310

Query: 463 DWDQPVAD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF- 636
              +   D W+ FYFL   RRNLLRNPC E+D+  W    +GG+ W+VE LPG  G +F 
Sbjct: 311 GGAEGERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEFI 370

Query: 637 PDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
            D  VKKYF +S+  C K+Q+IDL+AEGYWEELLD  +P IV KDW++ R+D GC Y + 
Sbjct: 371 HDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVAKDWYSGRSDAGCLYELT 430

Query: 817 VQLGSADYIVLASFEPPAVTI-PQWNDAQW 903
           V+L S    VLA F    V + P  +D  W
Sbjct: 431 VRLLSEHEDVLAEFSSGQVAVPPDGDDGGW 460



 Score = 23.9 bits (50), Expect(2) = 1e-50
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           ++SHTF+ Y PGV
Sbjct: 462 QISHTFTDYGPGV 474


>ref|XP_544570.2| PREDICTED: similar to F-box protein 44 isoform 1 [Canis
           familiaris].
          Length = 186

 Score =  165 bits (418), Expect = 5e-41
 Identities = 84/125 (67%), Positives = 94/125 (75%), Gaps = 6/125 (4%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPESILLE+FTH+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPESILLELFTHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSW---KIDSNGGNHWKVESLPGAH---G 627
           WDQPVADWK+FYFL SL RNLL NPCAE  + S    + D        V+ L  AH   G
Sbjct: 61  WDQPVADWKIFYFLRSLHRNLLHNPCAEGGVRSGFAARPDCGSKYQLCVQLLSSAHAPLG 120

Query: 628 TDFPD 642
           T  PD
Sbjct: 121 TFQPD 125



 Score = 47.8 bits (112), Expect(2) = 1e-08
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +1

Query: 763 VKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWNDAQWKK 909
           V+  FAAR DCG  Y + VQL S+ +  L +F+P   TI Q +DA+W++
Sbjct: 91  VRSGFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWRE 139



 Score = 30.4 bits (67), Expect(2) = 1e-08
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 139 EVSHTFSNYPPGV 151


>ref|XP_541630.2| PREDICTED: similar to F-box protein FBG4 isoform 1 [Canis
           familiaris].
          Length = 346

 Score =  129 bits (324), Expect = 4e-30
 Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFV-- 456
           ++++ LP  +L++V +H+P R L+  CR VC  WRD++D  T+W     R    EG    
Sbjct: 85  LALDALPPELLVQVLSHVPPRALVTRCRAVCRAWRDVVDGPTVWLLQLARDRSAEGRALY 144

Query: 457 ---------AEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVES 609
                     ED + P+     +     L RNL+ N C E     W+++ +GGN W VE 
Sbjct: 145 AVAQRCPPHGEDEEFPLCALARYCLRAPLGRNLIFNSCGEQGFRGWEVE-HGGNGWAVEK 203

Query: 610 LPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARA 789
               + T  P +  +  FVTS+  C K QL+DL  EG W+ELLD  + +I V DW+ AR 
Sbjct: 204 ----NLTLVPGAPSQTCFVTSFQWCFKRQLVDLVMEGVWQELLDSAQIEICVADWWGARE 259

Query: 790 DCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
           +CGC Y +RV+L       +  F      + QW +
Sbjct: 260 NCGCIYRLRVRLLDTYENEVVKFSASPNPVLQWTE 294


>ref|XP_541629.2| PREDICTED: similar to F-box protein 27 [Canis familiaris].
          Length = 387

 Score =  128 bits (321), Expect = 9e-30
 Identities = 79/219 (36%), Positives = 108/219 (49%), Gaps = 19/219 (8%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW--------------KR 432
           + ++QLP  +LL V +H+P R LL  CR VC  WR L+D   LW               R
Sbjct: 132 LDLSQLPPELLLVVLSHVPPRTLLGCCRRVCRGWRALVDGQALWLLILARDHGALLPLAR 191

Query: 433 KCLCEGFVAEDWDQPVADWKVFYF--LCSLR---RNLLRNPCAEDDMMSWKIDSNGGNHW 597
            CL           P  D         C  R   RNL+RNPC ++ +  W +  +GG+ W
Sbjct: 192 SCL----------PPARDGGPCLLGRFCERRPIGRNLIRNPCGQEGLRKWMVQ-HGGDGW 240

Query: 598 KVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWF 777
            VE     + +  P +  +  FV+S+  C K Q++DL+ EG W ELLD  + +I V DW+
Sbjct: 241 VVE----VNRSTVPGAPSQTCFVSSFSWCRKKQVLDLEEEGLWPELLDSGKIEICVSDWW 296

Query: 778 AARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
            AR D GC Y + VQL  A+  VL  F    V I QWN+
Sbjct: 297 GARHDSGCMYRLLVQLLDANQTVLDKFSAMPVPIQQWNN 335


>ref|XP_855369.1| PREDICTED: similar to nonspecific cytotoxic cell receptor protein 1
           [Canis familiaris].
          Length = 265

 Score = 63.9 bits (154), Expect(2) = 9e-11
 Identities = 40/121 (33%), Positives = 57/121 (47%)
 Frame = +1

Query: 475 PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVK 654
           P   W++ +    L RNLLR+P  E   +       G     +E+L    G      K++
Sbjct: 78  PRLTWQLLFLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQQPLETLGNFRGWYIGTEKLQ 137

Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
           +    +    +K Q +DL AEG WEELLD  +PDI V DW+       C Y + V L +A
Sbjct: 138 Q----NLSWTVKQQCVDLLAEGLWEELLDDEQPDITVMDWYEDSRLDTCVYELHVWLLAA 193

Query: 835 D 837
           D
Sbjct: 194 D 194



 Score = 21.2 bits (43), Expect(2) = 9e-11
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           +VSH F  Y PGV
Sbjct: 219 QVSHVFRQYGPGV 231


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,903,276
Number of extensions: 1121737
Number of successful extensions: 4035
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4023
Number of HSP's successfully gapped: 12
Length of query: 314
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 211
Effective length of database: 15,440,896
Effective search space: 3258029056
Effective search space used: 3258029056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127633.2| PREDICTED: f-box only protein 2-like [Sus sc...   205   3e-54
Alignment   gi|XP_003127178.2| PREDICTED: f-box only protein 17-like [Sus s...   127   7e-30
Alignment   gi|XP_003355947.1| PREDICTED: f-box only protein 27-like [Sus s...    93   2e-19
Alignment   gi|XP_003127175.2| PREDICTED: f-box only protein 27-like [Sus s...    84   1e-16
Alignment   gi|XP_003130576.1| PREDICTED: f-box only protein 27-like [Sus s...    72   4e-13
Alignment   gi|XP_003355946.1| PREDICTED: f-box only protein 27-like [Sus s...    69   3e-12
Alignment   gi|XP_003355939.1| PREDICTED: non-specific cytotoxic cell recep...    64   7e-11

>ref|XP_003127633.2| PREDICTED: f-box only protein 2-like [Sus scrofa].
          Length = 294

 Score =  205 bits (521), Expect(2) = 3e-54
 Identities = 101/203 (49%), Positives = 129/203 (63%), Gaps = 2/203 (0%)
 Frame = +1

Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPV 480
           +++LPE +LL V   LPA QL+  CR VC  W++L+D   LW  KC  EG V E   +  
Sbjct: 46  LDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGTEDE 105

Query: 481 AD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF-PDSKVK 654
            D W+ FYFL   RRNLLRNPC E+D+  W    +GG+ W+VE LPG  G +F  D  VK
Sbjct: 106 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDSGLEFIHDESVK 165

Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
           KYF +S+  C K+Q++DL+AEGYWEELLD  +P IVVKDW++ R D GC Y + V+L S 
Sbjct: 166 KYFASSFEWCRKAQVVDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSE 225

Query: 835 DYIVLASFEPPAVTIPQWNDAQW 903
              VLA F    V +PQ ND  W
Sbjct: 226 HEDVLAEFNSGQVVVPQDNDDGW 248



 Score = 25.0 bits (53), Expect(2) = 3e-54
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           E+SHTF+ Y PGV
Sbjct: 250 EISHTFTDYGPGV 262


>ref|XP_003127178.2| PREDICTED: f-box only protein 17-like [Sus scrofa].
          Length = 278

 Score =  127 bits (320), Expect = 7e-30
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFV-- 456
           ++++ LP  +L++V +H+P R L+  CRPVC  WRD++D  T+W     R    EG    
Sbjct: 16  MALDALPPELLVQVLSHVPPRALITRCRPVCRAWRDVVDGPTVWLLQLARDRSAEGRALY 75

Query: 457 ---------AEDWDQ-PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
                    +ED ++ P+     +     L RNL+ N C E    SW+++ +GGN W VE
Sbjct: 76  AVAQRCPPNSEDEEEFPLCALARYCLRAPLGRNLIFNSCGERGCRSWEVE-HGGNGWAVE 134

Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
                + T  P +  +  FVTS+  C K QL+DL  EG W+ELLD  + +I V DW+A  
Sbjct: 135 K----NITLVPGAPSQTCFVTSFEWCFKRQLVDLVMEGVWQELLDSAQIEICVADWWAPG 190

Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
            +CGC Y +RV+L       +  F      + QW +
Sbjct: 191 ENCGCIYRLRVRLLDVYENEVVKFSASPNPVLQWTE 226


>ref|XP_003355947.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
          Length = 406

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 20/227 (8%)
 Frame = +1

Query: 268 PLP-CTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLC 444
           P+P   A   + +NQLP  +LL + +H+P R L+ +CR VC  WR L+D   LW      
Sbjct: 139 PVPELEAEEALGLNQLPSELLLMLLSHVPPRTLIRHCRRVCRRWRALVDCQALWLI---- 194

Query: 445 EGFVAED----WDQPVADWK-----------VFYFLCSLR---RNLLRNPCAEDDMMSWK 570
              +A D    W  P+A  +           +    C  R   RNL++NP  E+  + W 
Sbjct: 195 --ILARDHCTLW--PIAQSRLPSARNDANPCILGRFCERRPIGRNLIQNPKGEEGFLKWT 250

Query: 571 I-DSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKF 747
           +  S  G   + E L        P   +   F ++Y    K Q++DL+ EG W ELLD  
Sbjct: 251 VLTSEDGWAEEDEDLKL-----IPRGCMLTSFQSAYWWYHKKQVVDLEEEGLWPELLDSG 305

Query: 748 RPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQW 888
           + +I V DW   +    C Y + VQL  A+  +L  F P    I +W
Sbjct: 306 KLEICVSDWRNDQQGTDCIYQLCVQLLDAEKAILDHFSPVPFPILKW 352


>ref|XP_003127175.2| PREDICTED: f-box only protein 27-like [Sus scrofa].
          Length = 318

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFVAE 462
           + ++QLP  +L+ + +H+P R LL  CR VC  W  L+D  TLW     R       V +
Sbjct: 32  LDLSQLPPELLMMLLSHVPPRVLLGRCRQVCRCWDALVDCPTLWLIILARDHRALWPVLQ 91

Query: 463 DWDQPVADWK--VFYFLCSLR---RNLLRNPCAEDDMMSWKIDSNGG-----NHWKVESL 612
               P +D +  +    C  R   +NL++N   ++  + W +           +W+V   
Sbjct: 92  TCLPPASDARPSILSRFCERRPIGQNLIQNLKGKEAFLDWFVLREEAALVLEENWRVTLN 151

Query: 613 PGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARAD 792
              H  D         F+++Y    K +++DL+ EG W ELLD  + +I V DW+  +  
Sbjct: 152 RSVHWQDC--------FLSAYRWHHKKKVVDLEEEGLWPELLDSGKLEICVSDWWTDKQC 203

Query: 793 CGCTYHIRVQLGSADYIVLASFEP 864
             C Y + VQL  A+  VL  F P
Sbjct: 204 TDCLYCLTVQLLDANQGVLHQFAP 227


>ref|XP_003130576.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
          Length = 304

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 61/200 (30%), Positives = 83/200 (41%), Gaps = 10/200 (5%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFVAE 462
           + +NQLP  +LL V + +P R L+ +CR VC  WR L+D   LW     R       V +
Sbjct: 29  LGLNQLPSELLLMVLSQVPPRMLIRHCRQVCRRWRALVDCQDLWLIILARDHRALWPVLQ 88

Query: 463 DWDQPVADWKV-----FYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHG 627
               P  D +      F     L +NL R+P  E+D       S        E   G   
Sbjct: 89  SCLPPADDTRPSVLGRFCVRRPLHQNLFRDPKGEEDFQKRPRVSREEEVALKEKWQGV-- 146

Query: 628 TDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDW-FAARADCGCT 804
                +  K  F   Y    K Q++DL+ EG W ELLD  + +I V DW    R      
Sbjct: 147 --IRRAGWKNSFRYLYRWFEKKQVVDLQEEGLWPELLDSGKIEIWVSDWRIERRQSSKHR 204

Query: 805 YHIRVQLGSADYIVLASFEP 864
           Y + V L  A+  +L  F P
Sbjct: 205 YELTVLLLDANKSILHRFAP 224


>ref|XP_003355946.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
          Length = 252

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 18/217 (8%)
 Frame = +1

Query: 268 PLP-CTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLC 444
           P+P   A   + +NQLP  +LL + +H+P R L+ +C PVC  W  L+D   LW      
Sbjct: 19  PVPELEAEEALGLNQLPSELLLMLLSHMPPRTLIRHCCPVCRRWHALVDCQVLW------ 72

Query: 445 EGFVAEDWDQ------------PVADWK--VFYFLCSLR---RNLLRNPCAEDDMMSWKI 573
              +   WD             P+ D K  +    C  R   RNL+ +    + M     
Sbjct: 73  --LIILAWDHHALWPILQTCLPPIEDTKPSILGRFCVCRPVGRNLMSSNPEGEGMPCTPG 130

Query: 574 DSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRP 753
              G  H                               + Q++DL+ EG W ELLD  + 
Sbjct: 131 PGQGWYH------------------------------KEKQILDLQEEGLWPELLDSGKL 160

Query: 754 DIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
           +I V DW+  +      YH+ VQL  A+  +L    P
Sbjct: 161 EICVSDWWNGQQGTDDLYHLIVQLPDANRSILVWASP 197


>ref|XP_003355939.1| PREDICTED: non-specific cytotoxic cell receptor protein 1 homolog
           [Sus scrofa].
          Length = 262

 Score = 63.5 bits (153), Expect(2) = 7e-11
 Identities = 40/121 (33%), Positives = 56/121 (46%)
 Frame = +1

Query: 475 PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVK 654
           P   WK+ +    L RNLLR+P  E   +       G     +E+L    G      K++
Sbjct: 75  PRLTWKLLFLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQQPLETLGNFRGWHIRTEKLQ 134

Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
           +    +    +K Q +DL AEG WEELLD  +P I V DW+       C Y + V L +A
Sbjct: 135 Q----NLSWTVKQQCVDLLAEGLWEELLDDEQPHITVMDWYEDSQLDTCVYELHVWLLAA 190

Query: 835 D 837
           D
Sbjct: 191 D 191



 Score = 21.2 bits (43), Expect(2) = 7e-11
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           +VSH F  Y PGV
Sbjct: 216 QVSHVFRHYGPGV 228


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,042,073
Number of extensions: 700003
Number of successful extensions: 2603
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2589
Number of HSP's successfully gapped: 9
Length of query: 314
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 215
Effective length of database: 8,879,129
Effective search space: 1909012735
Effective search space used: 1909012735
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001157176.1| F-box only protein 6 [Mus musculus].              332   8e-94
Alignment   gi|NP_056612.1| F-box only protein 6 [Mus musculus].                 332   8e-94
Alignment   gi|NP_001157178.1| F-box only protein 6 [Mus musculus].              332   8e-94
Alignment   gi|NP_001157179.1| F-box only protein 6 [Mus musculus].              332   8e-94
Alignment   gi|NP_001157177.1| F-box only protein 6 [Mus musculus].              332   8e-94
Alignment   gi|NP_001155323.1| F-box only protein 44 isoform 1 [Mus musculu...   301   2e-84
Alignment   gi|NP_775577.2| F-box only protein 44 isoform 1 [Mus musculus].      301   2e-84
Alignment   gi|NP_789818.1| F-box only protein 2 [Mus musculus].                 196   4e-51
Alignment   gi|NP_001155324.1| F-box only protein 44 isoform 2 [Mus musculu...   189   2e-48
Alignment   gi|NP_056611.2| F-box only protein 17 [Mus musculus].                126   2e-29

>ref|NP_001157176.1| F-box only protein 6 [Mus musculus].
          Length = 295

 Score =  332 bits (852), Expect(2) = 8e-94
 Identities = 152/206 (73%), Positives = 178/206 (86%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           +V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF  +D  
Sbjct: 1   MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60

Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
           +PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61  EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120

Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
           KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180

Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
           ADYIVLASFEPP VT  QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206



 Score = 30.4 bits (67), Expect(2) = 8e-94
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 903 EEVSHTFSGYPPGV 944
           +E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218


>ref|NP_056612.1| F-box only protein 6 [Mus musculus].
          Length = 295

 Score =  332 bits (852), Expect(2) = 8e-94
 Identities = 152/206 (73%), Positives = 178/206 (86%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           +V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF  +D  
Sbjct: 1   MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60

Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
           +PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61  EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120

Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
           KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180

Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
           ADYIVLASFEPP VT  QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206



 Score = 30.4 bits (67), Expect(2) = 8e-94
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 903 EEVSHTFSGYPPGV 944
           +E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218


>ref|NP_001157178.1| F-box only protein 6 [Mus musculus].
          Length = 295

 Score =  332 bits (852), Expect(2) = 8e-94
 Identities = 152/206 (73%), Positives = 178/206 (86%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           +V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF  +D  
Sbjct: 1   MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60

Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
           +PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61  EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120

Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
           KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180

Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
           ADYIVLASFEPP VT  QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206



 Score = 30.4 bits (67), Expect(2) = 8e-94
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 903 EEVSHTFSGYPPGV 944
           +E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218


>ref|NP_001157179.1| F-box only protein 6 [Mus musculus].
          Length = 295

 Score =  332 bits (852), Expect(2) = 8e-94
 Identities = 152/206 (73%), Positives = 178/206 (86%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           +V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF  +D  
Sbjct: 1   MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60

Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
           +PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61  EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120

Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
           KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180

Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
           ADYIVLASFEPP VT  QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206



 Score = 30.4 bits (67), Expect(2) = 8e-94
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 903 EEVSHTFSGYPPGV 944
           +E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218


>ref|NP_001157177.1| F-box only protein 6 [Mus musculus].
          Length = 295

 Score =  332 bits (852), Expect(2) = 8e-94
 Identities = 152/206 (73%), Positives = 178/206 (86%)
 Frame = +1

Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
           +V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF  +D  
Sbjct: 1   MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60

Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
           +PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61  EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120

Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
           KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180

Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
           ADYIVLASFEPP VT  QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206



 Score = 30.4 bits (67), Expect(2) = 8e-94
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 903 EEVSHTFSGYPPGV 944
           +E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218


>ref|NP_001155323.1| F-box only protein 44 isoform 1 [Mus musculus].
          Length = 255

 Score =  301 bits (770), Expect(2) = 2e-84
 Identities = 139/208 (66%), Positives = 166/208 (79%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL+RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           +VKKYFVTSY  CLKSQ++DLKAEGYWEEL+D  RPDI VKDWFAAR DCG  Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
            S+ +  L +F+P  V I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPVMIQQKSDAKWRE 208



 Score = 30.4 bits (67), Expect(2) = 2e-84
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220


>ref|NP_775577.2| F-box only protein 44 isoform 1 [Mus musculus].
          Length = 255

 Score =  301 bits (770), Expect(2) = 2e-84
 Identities = 139/208 (66%), Positives = 166/208 (79%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL+RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           +VKKYFVTSY  CLKSQ++DLKAEGYWEEL+D  RPDI VKDWFAAR DCG  Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
            S+ +  L +F+P  V I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPVMIQQKSDAKWRE 208



 Score = 30.4 bits (67), Expect(2) = 2e-84
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220


>ref|NP_789818.1| F-box only protein 2 [Mus musculus].
          Length = 297

 Score =  196 bits (499), Expect(2) = 4e-51
 Identities = 100/209 (47%), Positives = 131/209 (62%), Gaps = 2/209 (0%)
 Frame = +1

Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
           A A+  + +LPE +LL V   LPA +L+  CR VC  W++L+D   LW  KC  EG V E
Sbjct: 45  AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPE 104

Query: 463 -DWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFP 639
              D+    W+ FYFL   RRNLLRNPC E+D+  W    +GG+ W+VE LPG +G +F 
Sbjct: 105 GSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDNGVEFT 164

Query: 640 -DSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
            D  VKKYF +S+  C K+Q+IDL+AEGYWEELLD  +P IVVKDW++ R D G  Y + 
Sbjct: 165 QDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELT 224

Query: 817 VQLGSADYIVLASFEPPAVTIPQWNDAQW 903
           V+L S +  VLA F    V +P+  D  W
Sbjct: 225 VRLLSENEDVLAEFATGQVAVPE--DGSW 251



 Score = 23.9 bits (50), Expect(2) = 4e-51
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           E+SHTF  Y PGV
Sbjct: 253 EISHTFIDYGPGV 265


>ref|NP_001155324.1| F-box only protein 44 isoform 2 [Mus musculus].
          Length = 224

 Score =  189 bits (481), Expect = 2e-48
 Identities = 85/122 (69%), Positives = 100/122 (81%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL+RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120

Query: 646 KV 651
           +V
Sbjct: 121 QV 122


>ref|NP_056611.2| F-box only protein 17 [Mus musculus].
          Length = 286

 Score =  126 bits (317), Expect = 2e-29
 Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW---------------- 426
           +++ +LP  +L++V +H+P R L+  CRPVC  WRDL+D  ++W                
Sbjct: 16  LALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPSIWLLQLARDRSAEGRALY 75

Query: 427 --KRKCLCEGFVAEDWDQ------PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSN 582
              ++C  +     D D       P      F       RNL+ N C E     W+++ +
Sbjct: 76  ALAQRCPADADADADADGNRHDEFPFCALARFCLRAPFGRNLIHNSCGEQGFRGWEVE-H 134

Query: 583 GGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIV 762
           GGN W VE     + T  P +  +  FVTS+  C K QL+DL  EG W+ELLD  + +I 
Sbjct: 135 GGNGWAVEK----NLTLVPGAPSQTCFVTSFEWCSKRQLVDLVKEGVWQELLDSGQIEIC 190

Query: 763 VKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
           + DW+ AR +CGC Y +RV+L       +  F      + QW +
Sbjct: 191 IADWWGARENCGCIYRLRVRLLDEYENEVVKFSASPNPVLQWTE 234


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,105,038
Number of extensions: 908585
Number of successful extensions: 3393
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3346
Number of HSP's successfully gapped: 22
Length of query: 314
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 213
Effective length of database: 12,583,923
Effective search space: 2680375599
Effective search space used: 2680375599
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060908.1| F-box only protein 6 [Homo sapiens].                 373   e-104
Alignment   gi|NP_149438.2| F-box only protein 44 isoform 1 [Homo sapiens].      301   2e-84
Alignment   gi|NP_001014765.1| F-box only protein 44 isoform 1 [Homo sapien...   301   2e-84
Alignment   gi|NP_036300.2| F-box only protein 2 [Homo sapiens].                 200   2e-52
Alignment   gi|NP_904319.1| F-box only protein 44 isoform 2 [Homo sapiens].      190   1e-49
Alignment   gi|NP_904320.1| F-box only protein 44 isoform 2 [Homo sapiens].      190   1e-49
Alignment   gi|NP_849142.1| F-box only protein 27 [Homo sapiens].                134   9e-32
Alignment   gi|NP_680474.1| F-box only protein 17 isoform 1 [Homo sapiens].      131   8e-31
Alignment   gi|NP_079183.4| F-box only protein 17 isoform 2 [Homo sapiens].      131   8e-31
Alignment   gi|NP_001001414.1| non-specific cytotoxic cell receptor protein...    62   4e-10

>ref|NP_060908.1| F-box only protein 6 [Homo sapiens].
          Length = 293

 Score =  373 bits (957), Expect(2) = e-104
 Identities = 171/210 (81%), Positives = 188/210 (89%)
 Frame = +1

Query: 274 PCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGF 453
           P +  AL SIN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDL+TLWKRKCL EGF
Sbjct: 4   PHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLREGF 63

Query: 454 VAEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTD 633
           + +DWDQPVADWK+FYFL SL RNLLRNPCAE+DM +W+ID NGG+ WKVESLPGAHGTD
Sbjct: 64  ITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAHGTD 123

Query: 634 FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHI 813
           FPD KVKKYFVTSY MCLKSQL+DL AEGYWEELLD FRPDIVVKDWFAARADCGCTY +
Sbjct: 124 FPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCTYQL 183

Query: 814 RVQLGSADYIVLASFEPPAVTIPQWNDAQW 903
           +VQL SADY VLASFEPP VTI QWN+A W
Sbjct: 184 KVQLASADYFVLASFEPPPVTIQQWNNATW 213



 Score = 24.3 bits (51), Expect(2) = e-104
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVS+TFS YP GV
Sbjct: 215 EVSYTFSDYPRGV 227


>ref|NP_149438.2| F-box only protein 44 isoform 1 [Homo sapiens].
          Length = 255

 Score =  301 bits (772), Expect(2) = 2e-84
 Identities = 140/208 (67%), Positives = 166/208 (79%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           +VKKYFVTSY  CLKSQ++DLKAEGYWEEL+D  RPDI VKDWFAAR DCG  Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
            S+ +  L +F+P   TI Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPATIQQKSDAKWRE 208



 Score = 30.4 bits (67), Expect(2) = 2e-84
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220


>ref|NP_001014765.1| F-box only protein 44 isoform 1 [Homo sapiens].
          Length = 255

 Score =  301 bits (772), Expect(2) = 2e-84
 Identities = 140/208 (67%), Positives = 166/208 (79%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120

Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
           +VKKYFVTSY  CLKSQ++DLKAEGYWEEL+D  RPDI VKDWFAAR DCG  Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180

Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
            S+ +  L +F+P   TI Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPATIQQKSDAKWRE 208



 Score = 30.4 bits (67), Expect(2) = 2e-84
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220


>ref|NP_036300.2| F-box only protein 2 [Homo sapiens].
          Length = 296

 Score =  200 bits (508), Expect(2) = 2e-52
 Identities = 101/206 (49%), Positives = 131/206 (63%), Gaps = 2/206 (0%)
 Frame = +1

Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
           A A   +++LPE +LL V   LPA +L+  CR VC  W++L+D   LW  KC  EG V E
Sbjct: 41  AAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPE 100

Query: 463 DWDQPVAD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFP 639
              +   D W+ FYFL   RRNLLRNPC E+D+  W    +GG+ W+VE LPG  G +F 
Sbjct: 101 GGVEEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFT 160

Query: 640 -DSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
            D  VKKYF +S+  C K+Q+IDL+AEGYWEELLD  +P IVVKDW++ R+D GC Y + 
Sbjct: 161 HDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELT 220

Query: 817 VQLGSADYIVLASFEPPAVTIPQWND 894
           V+L S    VLA F    V +PQ +D
Sbjct: 221 VKLLSEHENVLAEFSSGQVAVPQDSD 246



 Score = 25.0 bits (53), Expect(2) = 2e-52
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           E+SHTF+ Y PGV
Sbjct: 252 EISHTFTDYGPGV 264


>ref|NP_904319.1| F-box only protein 44 isoform 2 [Homo sapiens].
          Length = 224

 Score =  190 bits (483), Expect(2) = 1e-49
 Identities = 86/123 (69%), Positives = 101/123 (82%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120

Query: 646 KVK 654
           +V+
Sbjct: 121 QVR 123



 Score = 25.0 bits (53), Expect(2) = 1e-49
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 774 VRRQSRLWLHLPHPSTXXXXXXXXXXXXXXXXCDHPSVERCPVE 905
           VR Q+RL + +P   +                 DHP+ ERC VE
Sbjct: 122 VRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVE 165


>ref|NP_904320.1| F-box only protein 44 isoform 2 [Homo sapiens].
          Length = 224

 Score =  190 bits (483), Expect(2) = 1e-49
 Identities = 86/123 (69%), Positives = 101/123 (82%)
 Frame = +1

Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
           MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1   MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60

Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
           WDQPVADWK+FYFL SL RNLL NPCAE+    W +D NGG+ WKVE L      +FP+ 
Sbjct: 61  WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120

Query: 646 KVK 654
           +V+
Sbjct: 121 QVR 123



 Score = 25.0 bits (53), Expect(2) = 1e-49
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 774 VRRQSRLWLHLPHPSTXXXXXXXXXXXXXXXXCDHPSVERCPVE 905
           VR Q+RL + +P   +                 DHP+ ERC VE
Sbjct: 122 VRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVE 165


>ref|NP_849142.1| F-box only protein 27 [Homo sapiens].
          Length = 283

 Score =  134 bits (338), Expect = 9e-32
 Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 13/213 (6%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---- 450
           + ++QLP  +LL V +H+P R LL  CR VC  WR L+D   LW     R     G    
Sbjct: 24  LDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALWLLILARDHGATGRALL 83

Query: 451 FVAEDWDQPVADWKVFYF--LCSLR---RNLLRNPCAEDDMMSWKIDSNGGNHWKVESLP 615
            +A     P  + +       C+ R   RNL+RNPC ++ +  W +  +GG+ W VE   
Sbjct: 84  HLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCGQEGLRKWMV-QHGGDGWVVEE-- 140

Query: 616 GAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADC 795
             + T  P +  +  FVTS+  C K Q++DL+ EG W ELLD  R +I V DW+ AR D 
Sbjct: 141 --NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLDSGRIEICVSDWWGARHDS 198

Query: 796 GCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
           GC Y + VQL  A+  VL  F      IPQWN+
Sbjct: 199 GCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNN 231


>ref|NP_680474.1| F-box only protein 17 isoform 1 [Homo sapiens].
          Length = 287

 Score =  131 bits (330), Expect = 8e-31
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---F 453
           ++++ LP  +L++V +H+P R L+  CRPVC  WRD++D  T+W     R    EG   +
Sbjct: 25  LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALY 84

Query: 454 VAEDWDQPVADWKVFYFLCSLRR---------NLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
                  P  + K  + LC+L R         NL+ N C E     W+++ +GGN W +E
Sbjct: 85  AVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 143

Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
                + T  P +  +  FVTS+  C K QL+DL  EG W+ELLD  + +I V DW+ AR
Sbjct: 144 K----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEICVADWWGAR 199

Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
            +CGC Y +RV+L       +  F      + QW +
Sbjct: 200 ENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTE 235


>ref|NP_079183.4| F-box only protein 17 isoform 2 [Homo sapiens].
          Length = 278

 Score =  131 bits (330), Expect = 8e-31
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
 Frame = +1

Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---F 453
           ++++ LP  +L++V +H+P R L+  CRPVC  WRD++D  T+W     R    EG   +
Sbjct: 16  LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALY 75

Query: 454 VAEDWDQPVADWKVFYFLCSLRR---------NLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
                  P  + K  + LC+L R         NL+ N C E     W+++ +GGN W +E
Sbjct: 76  AVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 134

Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
                + T  P +  +  FVTS+  C K QL+DL  EG W+ELLD  + +I V DW+ AR
Sbjct: 135 K----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEICVADWWGAR 190

Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
            +CGC Y +RV+L       +  F      + QW +
Sbjct: 191 ENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTE 226


>ref|NP_001001414.1| non-specific cytotoxic cell receptor protein 1 homolog [Homo
           sapiens].
          Length = 275

 Score = 61.6 bits (148), Expect(2) = 4e-10
 Identities = 40/117 (34%), Positives = 54/117 (46%)
 Frame = +1

Query: 487 WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFV 666
           WK+      L RNLLR+P  E   +       G     +E+L    G      K+++   
Sbjct: 92  WKLLLLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQRPLETLGNFRGWYIRTEKLQQ--- 148

Query: 667 TSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSAD 837
            +    +K Q +DL AEG WEELLD  +P I V DWF       C Y + V L +AD
Sbjct: 149 -NQSWTVKQQCVDLLAEGLWEELLDDEQPAITVMDWFEDSRLDACVYELHVWLLAAD 204



 Score = 21.2 bits (43), Expect(2) = 4e-10
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 906 EVSHTFSGYPPGV 944
           +VSH F  Y PGV
Sbjct: 229 QVSHVFRHYGPGV 241


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,056,022
Number of extensions: 1092738
Number of successful extensions: 3820
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3804
Number of HSP's successfully gapped: 17
Length of query: 314
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,934,836
Effective search space: 3166185232
Effective search space used: 3166185232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-014490
         (944 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209      587   e-165
Sscrofa_Chr06                                                         587   e-165
Sscrofa_Chr13                                                          64   1e-07
Sscrofa_Chr09                                                          64   1e-07

>gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209
          Length = 42327

 Score =  587 bits (296), Expect = e-165
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                         
Query: 255   ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 314
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10361 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 10420

                                                                         
Query: 315   cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 374
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10421 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 10480

                                                                         
Query: 375   ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 434
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10481 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 10540

                                                                         
Query: 435   atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 494
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10541 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 10600

                                                                     
Query: 495   cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 550
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10601 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 10656



 Score =  240 bits (121), Expect = 1e-60
 Identities = 127/129 (98%)
 Strand = Plus / Plus

                                                                         
Query: 549   agatgatatgatgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 608
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12984 agatgatatgacgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 13043

                                                                         
Query: 609   cctccctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 668
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13044 ccttcctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 13103

                      
Query: 669   atcttacgg 677
             |||||||||
Sbjct: 13104 atcttacgg 13112



 Score =  188 bits (95), Expect = 4e-45
 Identities = 98/99 (98%)
 Strand = Plus / Plus

                                                                         
Query: 677   gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagagctgc 736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13637 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagaactgc 13696

                                                    
Query: 737   tggacaagttccggccagacatcgtggtcaaggactggt 775
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 13697 tggacaagttccggccagacatcgtggtcaaggactggt 13735


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  587 bits (296), Expect = e-165
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                            
Query: 255      ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 314
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687449 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 65687508

                                                                            
Query: 315      cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 374
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687509 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 65687568

                                                                            
Query: 375      ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 434
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687569 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 65687628

                                                                            
Query: 435      atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 494
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687629 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 65687688

                                                                        
Query: 495      cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687689 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 65687744



 Score =  311 bits (157), Expect = 4e-82
 Identities = 241/269 (89%)
 Strand = Plus / Plus

                                                                            
Query: 282      agccatggccctggtcagcatcaaccagctgcccgagagcatcctgctggaggtgttcac 341
                |||||||||| ||| || ||||||| ||||||| || | ||||||||||||| |||||||
Sbjct: 65668017 agccatggccgtgggcaacatcaacgagctgccggaaaacatcctgctggagttgttcac 65668076

                                                                            
Query: 342      gcacctgcccgcccgccagctgctgctgaactgccgccccgtctgcagcctctggcgtga 401
                |||| |||||||||||||||||||||||  ||||||||  ||||||||||||||||||||
Sbjct: 65668077 gcacgtgcccgcccgccagctgctgctgcgctgccgcctggtctgcagcctctggcgtga 65668136

                                                                            
Query: 402      cctcattgacctcgtgaccctctggaagcgcaaatgcctatgtgagggcttcgtcgctga 461
                |||||| ||||||||||||||||||||||||||||||||  | ||||||||  || ||||
Sbjct: 65668137 cctcatcgacctcgtgaccctctggaagcgcaaatgcctgcgcgagggctttatcactga 65668196

                                                                            
Query: 462      ggactgggaccagcccgtggccgactggaaggtcttctactttctgtgcagcctccgcag 521
                ||||||||||||||||||||||||||||||| ||||||| || ||  |||||||||||||
Sbjct: 65668197 ggactgggaccagcccgtggccgactggaagatcttctatttccttcgcagcctccgcag 65668256

                                             
Query: 522      gaacctcctgcgcaacccgtgtgctgaag 550
                ||||||||||| |||||| ||||| ||||
Sbjct: 65668257 gaacctcctgcacaacccatgtgccgaag 65668285



 Score =  287 bits (145), Expect = 5e-75
 Identities = 145/145 (100%)
 Strand = Plus / Plus

                                                                            
Query: 112      aggttagcattacacgaaggtttcaacctggatccagagaagactccccaacaactccaa 171
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65676520 aggttagcattacacgaaggtttcaacctggatccagagaagactccccaacaactccaa 65676579

                                                                            
Query: 172      ggctggtgagcaaacaggtgctggtacctacagagaaagcccggagctcactcattgctt 231
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65676580 ggctggtgagcaaacaggtgctggtacctacagagaaagcccggagctcactcattgctt 65676639

                                         
Query: 232      tcttgccaactttggagtttgaggg 256
                |||||||||||||||||||||||||
Sbjct: 65676640 tcttgccaactttggagtttgaggg 65676664



 Score =  240 bits (121), Expect = 1e-60
 Identities = 127/129 (98%)
 Strand = Plus / Plus

                                                                            
Query: 549      agatgatatgatgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 608
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65690261 agatgatatgacgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 65690320

                                                                            
Query: 609      cctccctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 668
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65690321 ccttcctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 65690380

                         
Query: 669      atcttacgg 677
                |||||||||
Sbjct: 65690381 atcttacgg 65690389



 Score =  228 bits (115), Expect = 4e-57
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ggtcaggaggcggctcccgcttccccagagggaggaggaagccgagaggagatgggtccc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65674325 ggtcaggaggcggctcccgcttccccagagggaggaggaagccgagaggagatgggtccc 65674384

                                                                       
Query: 61       cgccgctgagccgcccaccgccgggaaggaaaggctgacgttcaggcgacaaggt 115
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65674385 cgccgctgagccgcccaccgccgggaaggaaaggctgacgttcaggcgacaaggt 65674439



 Score =  216 bits (109), Expect = 2e-53
 Identities = 121/125 (96%)
 Strand = Plus / Plus

                                                                            
Query: 773      ggttcgccgccagagcagactgtggttgcacctaccacatccgagtacagctgggctccg 832
                ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 65691747 ggttcgccgccagagcagactgtggctgcacctaccacatccgagtacagctggcctccg 65691806

                                                                            
Query: 833      ctgactacatcgtcctggcctccttcgagccccccgctgtgaccatccctcagtggaacg 892
                ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 65691807 ctgactacatcgtcctggcctccttcgagcccccgcctgtgaccatccctcagtggaacg 65691866

                     
Query: 893      atgcc 897
                |||||
Sbjct: 65691867 atgcc 65691871



 Score =  188 bits (95), Expect = 4e-45
 Identities = 98/99 (98%)
 Strand = Plus / Plus

                                                                            
Query: 677      gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagagctgc 736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65690861 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagaactgc 65690920

                                                       
Query: 737      tggacaagttccggccagacatcgtggtcaaggactggt 775
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 65690921 tggacaagttccggccagacatcgtggtcaaggactggt 65690959


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                         
Query: 167       tccaaggctggtgagcaaacaggtgctggtacctacagag 206
                 ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 133624631 tccaaggctggtgagcaaacaagtgctggtacccacagag 133624592


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 143      atccagagaagactccccaacaactccaaggctggtgagcaaacaggtgctggtacctac 202
                |||||| |||||| |||||  |||||  |||||||||||||||||||| |||||||| ||
Sbjct: 25623144 atccagggaagaccccccagtaactctgaggctggtgagcaaacaggttctggtacccac 25623085

                    
Query: 203      agag 206
                ||||
Sbjct: 25623084 agag 25623081


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,464,253
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 12
Length of query: 944
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 923
Effective length of database: 2,808,413,156
Effective search space: 2592165342988
Effective search space used: 2592165342988
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)