Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029605.1| F-box only protein 6 [Bos taurus]. 394 e-112
Alignment gi|NP_001094765.1| F-box only protein 44 [Bos taurus]. 299 8e-84
Alignment gi|NP_001069037.1| F-box only protein 2 [Bos taurus]. 199 4e-52
Alignment gi|XP_002695088.1| PREDICTED: F-box protein 27-like [Bos taurus]. 92 9e-19
Alignment gi|XP_584814.3| PREDICTED: F-box protein 27-like [Bos taurus]. 92 9e-19
Alignment gi|XP_002695089.1| PREDICTED: F-box protein-like [Bos taurus]. 89 7e-18
Alignment gi|XP_001256098.1| PREDICTED: F-box protein-like [Bos taurus]. 89 7e-18
Alignment gi|XP_002688187.1| PREDICTED: F-box protein 27-like [Bos taurus]. 84 2e-16
Alignment gi|XP_608753.3| PREDICTED: F-box protein 27-like [Bos taurus]. 83 4e-16
Alignment gi|XP_002695093.1| PREDICTED: F-box protein 27-like [Bos taurus]. 74 2e-13
>ref|NP_001029605.1| F-box only protein 6 [Bos taurus].
Length = 265
Score = 394 bits (1012), Expect(2) = e-112
Identities = 182/206 (88%), Positives = 192/206 (93%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MALVSINQLPE+ILLEVF H+PARQLL NCRPVC LWRDLIDLV+LWKRKCL EG+V ED
Sbjct: 1 MALVSINQLPENILLEVFMHVPARQLLRNCRPVCCLWRDLIDLVSLWKRKCLREGYVTED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPV+DWKVFYFLCSLRRNLLRNPCAE+DM SWKIDSNGG+ WKVESLPGAHGT FPDS
Sbjct: 61 WDQPVSDWKVFYFLCSLRRNLLRNPCAEEDMKSWKIDSNGGDQWKVESLPGAHGTGFPDS 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
KVKKYFVTSY MCLKSQ+IDLKAEGYWEELLDKFRPDIVVKDWFA RADCGCTY IRVQL
Sbjct: 121 KVKKYFVTSYDMCLKSQIIDLKAEGYWEELLDKFRPDIVVKDWFAPRADCGCTYQIRVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQW 903
SADY+VLASFEPP VTI QWNDA+W
Sbjct: 181 ASADYLVLASFEPPPVTIHQWNDAKW 206
Score = 30.0 bits (66), Expect(2) = e-112
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSDYPPGV 220
>ref|NP_001094765.1| F-box only protein 44 [Bos taurus].
Length = 255
Score = 299 bits (766), Expect(2) = 8e-84
Identities = 140/208 (67%), Positives = 165/208 (79%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+FTH+PARQLLL CR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLRCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWKVFYFL SLRRNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKVFYFLRSLRRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
+VKKYFVTSY CLKSQ++DLKAEGYWEEL+D RPDI VKDWFAAR DCG Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
S+ + L +F+P I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPAMIQQKSDAKWRE 208
Score = 30.4 bits (67), Expect(2) = 8e-84
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220
>ref|NP_001069037.1| F-box only protein 2 [Bos taurus].
Length = 297
Score = 199 bits (505), Expect(2) = 4e-52
Identities = 99/200 (49%), Positives = 128/200 (64%), Gaps = 2/200 (1%)
Frame = +1
Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPV 480
+++LPE +LL V LPA QL+ CR VC W++L+D LW KC EG V +D +
Sbjct: 48 LDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPQDGPEDE 107
Query: 481 AD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF-PDSKVK 654
D W+ FYFL RRNLLRNPC E+D+ W +GG+ W+VE LPG G +F D VK
Sbjct: 108 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEFIHDESVK 167
Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
KYF +S+ C K+Q+IDL+AEGYWEELLD +P IVVKDW++ R D GC Y + V+L S
Sbjct: 168 KYFASSFEWCRKAQIIDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSE 227
Query: 835 DYIVLASFEPPAVTIPQWND 894
VLA F V +P +D
Sbjct: 228 HEDVLAEFNSGQVAVPADSD 247
Score = 25.0 bits (53), Expect(2) = 4e-52
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
E+SHTF+ Y PGV
Sbjct: 253 EISHTFTDYGPGV 265
>ref|XP_002695088.1| PREDICTED: F-box protein 27-like [Bos taurus].
Length = 283
Score = 91.7 bits (226), Expect = 9e-19
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
++ +N+LP +L EV ++LP LL CRPVC WRD++D LW+ W
Sbjct: 6 VLDLNRLPNELLQEVLSYLPPSTLLQQCRPVCRRWRDVVDGWDLWRSIL--------PWK 57
Query: 472 QPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAH 624
P W V C L R R P + + + G ++ GA
Sbjct: 58 HPDL-WPVIRTCLPPADDPGPCILGRFCERRPIGRNLLGDSQSSRGLGFLNRMVLTAGAA 116
Query: 625 GTDFPDSKV-------KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAA 783
+++V +++F+++Y C + Q++DL+ EG W ELLD +I V DW+
Sbjct: 117 RGAEENARVGPLMAYRQRWFLSTYRWCQQKQVLDLEKEGLWRELLDSGNIEICVSDWWFD 176
Query: 784 RADCGCTYHIRVQLGSADYIVLASFEP 864
D C Y + VQL A+ +VL F P
Sbjct: 177 DRDADCLYRLIVQLLDANQVVLHHFSP 203
>ref|XP_584814.3| PREDICTED: F-box protein 27-like [Bos taurus].
Length = 283
Score = 91.7 bits (226), Expect = 9e-19
Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
++ +N+LP +L EV ++LP LL CRPVC WRD++D LW+ W
Sbjct: 6 VLDLNRLPNELLQEVLSYLPPSTLLQQCRPVCRRWRDVVDGWDLWRSIL--------PWK 57
Query: 472 QPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAH 624
P W V C L R R P + + + G ++ GA
Sbjct: 58 HPDL-WPVIRTCLPPADDPGPCILGRFCERRPIGRNLLGDSQSSRGLGFLNRMVLTAGAA 116
Query: 625 GTDFPDSKV-------KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAA 783
+++V +++F+++Y C + Q++DL+ EG W ELLD +I V DW+
Sbjct: 117 RGAEENARVGPLMAYRQRWFLSTYRWCQQKQVLDLEKEGLWRELLDSGNIEICVSDWWFD 176
Query: 784 RADCGCTYHIRVQLGSADYIVLASFEP 864
D C Y + VQL A+ +VL F P
Sbjct: 177 DRDADCLYRLIVQLLDANQVVLHHFSP 203
>ref|XP_002695089.1| PREDICTED: F-box protein-like [Bos taurus].
Length = 281
Score = 88.6 bits (218), Expect = 7e-18
Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 15/216 (6%)
Frame = +1
Query: 262 VCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCL 441
VC L NQLP +L EV ++LP R L+ +CR VC WRD++D LW+
Sbjct: 13 VCSLKPEPKETPGPNQLPIEMLREVLSYLPPRMLIRHCRLVCRRWRDVVDDWDLWRSIL- 71
Query: 442 CEGFVAEDWDQPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNH 594
W P W V C L R R P + + S + G
Sbjct: 72 -------PWKHPNL-WPVIRTCLPPADNPGPCILGRFCERRPIGRNLLRSPRGLGGGSQK 123
Query: 595 WKVESLPGAHGTD------FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPD 756
W V S + P + ++ F++SY K Q++DL+ EG W ELLD +
Sbjct: 124 WTVLSREDDWTEEKENLEVMPRAYMQTSFLSSYRRYHKKQVLDLEKEGLWRELLDSGNIE 183
Query: 757 IVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
I V DW R C Y + V L A+ +L F P
Sbjct: 184 ICVSDWRNDRQGIDCIYQLTVHLLDANQAILDHFSP 219
>ref|XP_001256098.1| PREDICTED: F-box protein-like [Bos taurus].
Length = 281
Score = 88.6 bits (218), Expect = 7e-18
Identities = 66/216 (30%), Positives = 90/216 (41%), Gaps = 15/216 (6%)
Frame = +1
Query: 262 VCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCL 441
VC L NQLP +L EV ++LP R L+ +CR VC WRD++D LW+
Sbjct: 13 VCSLKPEPKETPGPNQLPIEMLREVLSYLPPRMLIRHCRLVCRRWRDVVDDWDLWRSIL- 71
Query: 442 CEGFVAEDWDQPVADWKVFYFL---------CSLRRNLLRNPCAEDDMMSWKIDSNGGNH 594
W P W V C L R R P + + S + G
Sbjct: 72 -------PWKHPNL-WPVIRTCLPPADNPGPCILGRFCERRPIGRNLLRSPRGLGGGSQK 123
Query: 595 WKVESLPGAHGTD------FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPD 756
W V S + P + ++ F++SY K Q++DL+ EG W ELLD +
Sbjct: 124 WTVLSREDDWTEEKENLEVMPRAYMQTSFLSSYRRYHKKQVLDLEKEGLWRELLDSGNIE 183
Query: 757 IVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
I V DW R C Y + V L A+ +L F P
Sbjct: 184 ICVSDWRNDRQGIDCIYQLTVHLLDANQAILDHFSP 219
>ref|XP_002688187.1| PREDICTED: F-box protein 27-like [Bos taurus].
Length = 304
Score = 83.6 bits (205), Expect = 2e-16
Identities = 72/230 (31%), Positives = 96/230 (41%), Gaps = 12/230 (5%)
Frame = +1
Query: 211 PGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCS 390
PG + + L ACV ++QLP +LLE+ ++LP LL CR VC
Sbjct: 22 PGEETTGASASQGLPACVPASDPEPKEAPGLSQLPIEMLLEMLSYLPTSMLLGQCRHVCW 81
Query: 391 LWRDLIDL------------VTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLR 534
WR L+D V LW C +D +P + F L RNL
Sbjct: 82 YWRYLVDTRAVWLSILPYSHVKLWPVFQTCLPLDNDDNSRPCLLGR-FCERRPLGRNLYP 140
Query: 535 NPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKA 714
NP D + W+ N + + ES H DS F Y C K Q +DL+
Sbjct: 141 NPHGIDAFLPWRT-INCTSWREEESWEEDHRLVPEDS-----FQPFYRWCYKKQALDLEK 194
Query: 715 EGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
EG W ELLD + +I V W+A + C Y + VQL +A L F P
Sbjct: 195 EGLWPELLDSGKIEICVSAWWANQEASVCLYELIVQLLNAKQAKLHHFSP 244
>ref|XP_608753.3| PREDICTED: F-box protein 27-like [Bos taurus].
Length = 304
Score = 82.8 bits (203), Expect = 4e-16
Identities = 72/230 (31%), Positives = 95/230 (41%), Gaps = 12/230 (5%)
Frame = +1
Query: 211 PGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCS 390
PG + + L ACV ++QLP +LLE+ ++LP LL CR VC
Sbjct: 22 PGEETTGASASQGLPACVPASDPEPKEAPGLSQLPIEMLLEMLSYLPTSMLLGQCRHVCW 81
Query: 391 LWRDLIDL------------VTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLR 534
WR L+D V LW C +D +P + F L RNL
Sbjct: 82 YWRYLVDTRAVWLSILPYSHVKLWPVFQTCLPLDNDDNSRPCLLGR-FCERRPLGRNLYP 140
Query: 535 NPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKA 714
NP D + W N + + ES H DS F Y C K Q +DL+
Sbjct: 141 NPHGIDAFLPWST-INCTSWREEESWEEDHRLVPEDS-----FQPFYRWCYKKQALDLEK 194
Query: 715 EGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
EG W ELLD + +I V W+A + C Y + VQL +A L F P
Sbjct: 195 EGLWPELLDSGKIEICVSAWWANQEASVCLYELIVQLLNAKQAKLHHFSP 244
>ref|XP_002695093.1| PREDICTED: F-box protein 27-like [Bos taurus].
Length = 295
Score = 73.6 bits (179), Expect = 2e-13
Identities = 60/202 (29%), Positives = 83/202 (41%), Gaps = 14/202 (6%)
Frame = +1
Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWK--------------RKC 438
++QLP +LLEV ++LP LL CR VC WR L+D +W R C
Sbjct: 43 LSQLPIEMLLEVLSYLPTSVLLGQCRHVCWYWRYLVDTRAVWLSILPYSHAKLWPVFRTC 102
Query: 439 LCEGFVAEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPG 618
L D D F L RNL N D + W+ + W+ E
Sbjct: 103 LPPD---NDDDPRPCLLGRFCERRPLGRNLYPNRHGIDAFLPWR--TINCTSWRQEESWE 157
Query: 619 AHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCG 798
P+ + + Y C K Q++DL+ EG W ELLD + +I + W+A +
Sbjct: 158 EDRRLVPEDPFQPF----YRWCYKKQVLDLEKEGLWPELLDSGKIEICISAWWADQEASV 213
Query: 799 CTYHIRVQLGSADYIVLASFEP 864
C Y + VQL A L P
Sbjct: 214 CLYELIVQLLDAKQARLHHLSP 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,220,435
Number of extensions: 1081735
Number of successful extensions: 4034
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4001
Number of HSP's successfully gapped: 26
Length of query: 314
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,306,398
Effective search space: 3032956376
Effective search space used: 3032956376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014490
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544569.1| PREDICTED: similar to F-box only protein 6 (F-b... 402 e-114
Alignment gi|XP_535406.2| PREDICTED: similar to F-box only protein 2 [Can... 195 1e-50
Alignment gi|XP_544570.2| PREDICTED: similar to F-box protein 44 isoform ... 165 5e-41
Alignment gi|XP_541630.2| PREDICTED: similar to F-box protein FBG4 isofor... 129 4e-30
Alignment gi|XP_541629.2| PREDICTED: similar to F-box protein 27 [Canis f... 128 9e-30
Alignment gi|XP_855369.1| PREDICTED: similar to nonspecific cytotoxic cel... 64 9e-11
>ref|XP_544569.1| PREDICTED: similar to F-box only protein 6 (F-box/G-domain protein
2) [Canis familiaris].
Length = 315
Score = 402 bits (1033), Expect(2) = e-114
Identities = 188/237 (79%), Positives = 203/237 (85%)
Frame = +1
Query: 193 WYLQRKPGAHSLLSCQLWSLRACVCPLPCTAMALVSINQLPESILLEVFTHLPARQLLLN 372
W L+ + + SC VC P AMALVSIN+LPESILLEVFTH+PARQLLL
Sbjct: 5 WVLRPRSRVGVITSCP----HRPVCAPPAPAMALVSINELPESILLEVFTHIPARQLLLR 60
Query: 373 CRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPVADWKVFYFLCSLRRNLLRNPCAED 552
CRPVCSLWRDLIDLVTLWKRKCL EGF+ EDWDQPVADWK+F+FLCSLRRNLLRNPCAE+
Sbjct: 61 CRPVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVADWKIFFFLCSLRRNLLRNPCAEE 120
Query: 553 DMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEE 732
DM SW+ID NGG+ WKVESLPG HGTDFPDSKVKKYFVTSY MCLKSQL+DLKAEGYWEE
Sbjct: 121 DMKSWQIDCNGGDEWKVESLPGDHGTDFPDSKVKKYFVTSYEMCLKSQLVDLKAEGYWEE 180
Query: 733 LLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWNDAQW 903
LLD RP+IVVKDWFAARADCGCTYHIRVQL SADYIVLASFEPP VT+ QWN A+W
Sbjct: 181 LLDTVRPEIVVKDWFAARADCGCTYHIRVQLASADYIVLASFEPPPVTVDQWNSAKW 237
Score = 30.0 bits (66), Expect(2) = e-114
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 239 EVSHTFSDYPPGV 251
>ref|XP_535406.2| PREDICTED: similar to F-box only protein 2 [Canis familiaris].
Length = 506
Score = 195 bits (496), Expect(2) = 1e-50
Identities = 101/210 (48%), Positives = 130/210 (61%), Gaps = 3/210 (1%)
Frame = +1
Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
A A +++LPE +LL V LPA QL+ CR VC W++L+D LW KC EG V E
Sbjct: 251 AGAAAHLDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGGPLWLLKCQQEGLVPE 310
Query: 463 DWDQPVAD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF- 636
+ D W+ FYFL RRNLLRNPC E+D+ W +GG+ W+VE LPG G +F
Sbjct: 311 GGAEGERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDCGVEFI 370
Query: 637 PDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
D VKKYF +S+ C K+Q+IDL+AEGYWEELLD +P IV KDW++ R+D GC Y +
Sbjct: 371 HDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVAKDWYSGRSDAGCLYELT 430
Query: 817 VQLGSADYIVLASFEPPAVTI-PQWNDAQW 903
V+L S VLA F V + P +D W
Sbjct: 431 VRLLSEHEDVLAEFSSGQVAVPPDGDDGGW 460
Score = 23.9 bits (50), Expect(2) = 1e-50
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
++SHTF+ Y PGV
Sbjct: 462 QISHTFTDYGPGV 474
>ref|XP_544570.2| PREDICTED: similar to F-box protein 44 isoform 1 [Canis
familiaris].
Length = 186
Score = 165 bits (418), Expect = 5e-41
Identities = 84/125 (67%), Positives = 94/125 (75%), Gaps = 6/125 (4%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPESILLE+FTH+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPESILLELFTHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSW---KIDSNGGNHWKVESLPGAH---G 627
WDQPVADWK+FYFL SL RNLL NPCAE + S + D V+ L AH G
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEGGVRSGFAARPDCGSKYQLCVQLLSSAHAPLG 120
Query: 628 TDFPD 642
T PD
Sbjct: 121 TFQPD 125
Score = 47.8 bits (112), Expect(2) = 1e-08
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +1
Query: 763 VKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWNDAQWKK 909
V+ FAAR DCG Y + VQL S+ + L +F+P TI Q +DA+W++
Sbjct: 91 VRSGFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWRE 139
Score = 30.4 bits (67), Expect(2) = 1e-08
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 139 EVSHTFSNYPPGV 151
>ref|XP_541630.2| PREDICTED: similar to F-box protein FBG4 isoform 1 [Canis
familiaris].
Length = 346
Score = 129 bits (324), Expect = 4e-30
Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFV-- 456
++++ LP +L++V +H+P R L+ CR VC WRD++D T+W R EG
Sbjct: 85 LALDALPPELLVQVLSHVPPRALVTRCRAVCRAWRDVVDGPTVWLLQLARDRSAEGRALY 144
Query: 457 ---------AEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVES 609
ED + P+ + L RNL+ N C E W+++ +GGN W VE
Sbjct: 145 AVAQRCPPHGEDEEFPLCALARYCLRAPLGRNLIFNSCGEQGFRGWEVE-HGGNGWAVEK 203
Query: 610 LPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARA 789
+ T P + + FVTS+ C K QL+DL EG W+ELLD + +I V DW+ AR
Sbjct: 204 ----NLTLVPGAPSQTCFVTSFQWCFKRQLVDLVMEGVWQELLDSAQIEICVADWWGARE 259
Query: 790 DCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
+CGC Y +RV+L + F + QW +
Sbjct: 260 NCGCIYRLRVRLLDTYENEVVKFSASPNPVLQWTE 294
>ref|XP_541629.2| PREDICTED: similar to F-box protein 27 [Canis familiaris].
Length = 387
Score = 128 bits (321), Expect = 9e-30
Identities = 79/219 (36%), Positives = 108/219 (49%), Gaps = 19/219 (8%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW--------------KR 432
+ ++QLP +LL V +H+P R LL CR VC WR L+D LW R
Sbjct: 132 LDLSQLPPELLLVVLSHVPPRTLLGCCRRVCRGWRALVDGQALWLLILARDHGALLPLAR 191
Query: 433 KCLCEGFVAEDWDQPVADWKVFYF--LCSLR---RNLLRNPCAEDDMMSWKIDSNGGNHW 597
CL P D C R RNL+RNPC ++ + W + +GG+ W
Sbjct: 192 SCL----------PPARDGGPCLLGRFCERRPIGRNLIRNPCGQEGLRKWMVQ-HGGDGW 240
Query: 598 KVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWF 777
VE + + P + + FV+S+ C K Q++DL+ EG W ELLD + +I V DW+
Sbjct: 241 VVE----VNRSTVPGAPSQTCFVSSFSWCRKKQVLDLEEEGLWPELLDSGKIEICVSDWW 296
Query: 778 AARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
AR D GC Y + VQL A+ VL F V I QWN+
Sbjct: 297 GARHDSGCMYRLLVQLLDANQTVLDKFSAMPVPIQQWNN 335
>ref|XP_855369.1| PREDICTED: similar to nonspecific cytotoxic cell receptor protein 1
[Canis familiaris].
Length = 265
Score = 63.9 bits (154), Expect(2) = 9e-11
Identities = 40/121 (33%), Positives = 57/121 (47%)
Frame = +1
Query: 475 PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVK 654
P W++ + L RNLLR+P E + G +E+L G K++
Sbjct: 78 PRLTWQLLFLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQQPLETLGNFRGWYIGTEKLQ 137
Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
+ + +K Q +DL AEG WEELLD +PDI V DW+ C Y + V L +A
Sbjct: 138 Q----NLSWTVKQQCVDLLAEGLWEELLDDEQPDITVMDWYEDSRLDTCVYELHVWLLAA 193
Query: 835 D 837
D
Sbjct: 194 D 194
Score = 21.2 bits (43), Expect(2) = 9e-11
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
+VSH F Y PGV
Sbjct: 219 QVSHVFRQYGPGV 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,903,276
Number of extensions: 1121737
Number of successful extensions: 4035
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4023
Number of HSP's successfully gapped: 12
Length of query: 314
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 211
Effective length of database: 15,440,896
Effective search space: 3258029056
Effective search space used: 3258029056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127633.2| PREDICTED: f-box only protein 2-like [Sus sc... 205 3e-54
Alignment gi|XP_003127178.2| PREDICTED: f-box only protein 17-like [Sus s... 127 7e-30
Alignment gi|XP_003355947.1| PREDICTED: f-box only protein 27-like [Sus s... 93 2e-19
Alignment gi|XP_003127175.2| PREDICTED: f-box only protein 27-like [Sus s... 84 1e-16
Alignment gi|XP_003130576.1| PREDICTED: f-box only protein 27-like [Sus s... 72 4e-13
Alignment gi|XP_003355946.1| PREDICTED: f-box only protein 27-like [Sus s... 69 3e-12
Alignment gi|XP_003355939.1| PREDICTED: non-specific cytotoxic cell recep... 64 7e-11
>ref|XP_003127633.2| PREDICTED: f-box only protein 2-like [Sus scrofa].
Length = 294
Score = 205 bits (521), Expect(2) = 3e-54
Identities = 101/203 (49%), Positives = 129/203 (63%), Gaps = 2/203 (0%)
Frame = +1
Query: 301 INQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWDQPV 480
+++LPE +LL V LPA QL+ CR VC W++L+D LW KC EG V E +
Sbjct: 46 LDELPEPLLLRVLAELPAAQLVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGTEDE 105
Query: 481 AD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDF-PDSKVK 654
D W+ FYFL RRNLLRNPC E+D+ W +GG+ W+VE LPG G +F D VK
Sbjct: 106 RDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDSGLEFIHDESVK 165
Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
KYF +S+ C K+Q++DL+AEGYWEELLD +P IVVKDW++ R D GC Y + V+L S
Sbjct: 166 KYFASSFEWCRKAQVVDLQAEGYWEELLDTTQPAIVVKDWYSGRRDAGCLYELTVKLLSE 225
Query: 835 DYIVLASFEPPAVTIPQWNDAQW 903
VLA F V +PQ ND W
Sbjct: 226 HEDVLAEFNSGQVVVPQDNDDGW 248
Score = 25.0 bits (53), Expect(2) = 3e-54
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
E+SHTF+ Y PGV
Sbjct: 250 EISHTFTDYGPGV 262
>ref|XP_003127178.2| PREDICTED: f-box only protein 17-like [Sus scrofa].
Length = 278
Score = 127 bits (320), Expect = 7e-30
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFV-- 456
++++ LP +L++V +H+P R L+ CRPVC WRD++D T+W R EG
Sbjct: 16 MALDALPPELLVQVLSHVPPRALITRCRPVCRAWRDVVDGPTVWLLQLARDRSAEGRALY 75
Query: 457 ---------AEDWDQ-PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
+ED ++ P+ + L RNL+ N C E SW+++ +GGN W VE
Sbjct: 76 AVAQRCPPNSEDEEEFPLCALARYCLRAPLGRNLIFNSCGERGCRSWEVE-HGGNGWAVE 134
Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
+ T P + + FVTS+ C K QL+DL EG W+ELLD + +I V DW+A
Sbjct: 135 K----NITLVPGAPSQTCFVTSFEWCFKRQLVDLVMEGVWQELLDSAQIEICVADWWAPG 190
Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
+CGC Y +RV+L + F + QW +
Sbjct: 191 ENCGCIYRLRVRLLDVYENEVVKFSASPNPVLQWTE 226
>ref|XP_003355947.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
Length = 406
Score = 93.2 bits (230), Expect = 2e-19
Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 20/227 (8%)
Frame = +1
Query: 268 PLP-CTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLC 444
P+P A + +NQLP +LL + +H+P R L+ +CR VC WR L+D LW
Sbjct: 139 PVPELEAEEALGLNQLPSELLLMLLSHVPPRTLIRHCRRVCRRWRALVDCQALWLI---- 194
Query: 445 EGFVAED----WDQPVADWK-----------VFYFLCSLR---RNLLRNPCAEDDMMSWK 570
+A D W P+A + + C R RNL++NP E+ + W
Sbjct: 195 --ILARDHCTLW--PIAQSRLPSARNDANPCILGRFCERRPIGRNLIQNPKGEEGFLKWT 250
Query: 571 I-DSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKF 747
+ S G + E L P + F ++Y K Q++DL+ EG W ELLD
Sbjct: 251 VLTSEDGWAEEDEDLKL-----IPRGCMLTSFQSAYWWYHKKQVVDLEEEGLWPELLDSG 305
Query: 748 RPDIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQW 888
+ +I V DW + C Y + VQL A+ +L F P I +W
Sbjct: 306 KLEICVSDWRNDQQGTDCIYQLCVQLLDAEKAILDHFSPVPFPILKW 352
>ref|XP_003127175.2| PREDICTED: f-box only protein 27-like [Sus scrofa].
Length = 318
Score = 83.6 bits (205), Expect = 1e-16
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFVAE 462
+ ++QLP +L+ + +H+P R LL CR VC W L+D TLW R V +
Sbjct: 32 LDLSQLPPELLMMLLSHVPPRVLLGRCRQVCRCWDALVDCPTLWLIILARDHRALWPVLQ 91
Query: 463 DWDQPVADWK--VFYFLCSLR---RNLLRNPCAEDDMMSWKIDSNGG-----NHWKVESL 612
P +D + + C R +NL++N ++ + W + +W+V
Sbjct: 92 TCLPPASDARPSILSRFCERRPIGQNLIQNLKGKEAFLDWFVLREEAALVLEENWRVTLN 151
Query: 613 PGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARAD 792
H D F+++Y K +++DL+ EG W ELLD + +I V DW+ +
Sbjct: 152 RSVHWQDC--------FLSAYRWHHKKKVVDLEEEGLWPELLDSGKLEICVSDWWTDKQC 203
Query: 793 CGCTYHIRVQLGSADYIVLASFEP 864
C Y + VQL A+ VL F P
Sbjct: 204 TDCLYCLTVQLLDANQGVLHQFAP 227
>ref|XP_003130576.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
Length = 304
Score = 72.0 bits (175), Expect = 4e-13
Identities = 61/200 (30%), Positives = 83/200 (41%), Gaps = 10/200 (5%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEGFVAE 462
+ +NQLP +LL V + +P R L+ +CR VC WR L+D LW R V +
Sbjct: 29 LGLNQLPSELLLMVLSQVPPRMLIRHCRQVCRRWRALVDCQDLWLIILARDHRALWPVLQ 88
Query: 463 DWDQPVADWKV-----FYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHG 627
P D + F L +NL R+P E+D S E G
Sbjct: 89 SCLPPADDTRPSVLGRFCVRRPLHQNLFRDPKGEEDFQKRPRVSREEEVALKEKWQGV-- 146
Query: 628 TDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDW-FAARADCGCT 804
+ K F Y K Q++DL+ EG W ELLD + +I V DW R
Sbjct: 147 --IRRAGWKNSFRYLYRWFEKKQVVDLQEEGLWPELLDSGKIEIWVSDWRIERRQSSKHR 204
Query: 805 YHIRVQLGSADYIVLASFEP 864
Y + V L A+ +L F P
Sbjct: 205 YELTVLLLDANKSILHRFAP 224
>ref|XP_003355946.1| PREDICTED: f-box only protein 27-like [Sus scrofa].
Length = 252
Score = 69.3 bits (168), Expect = 3e-12
Identities = 57/217 (26%), Positives = 84/217 (38%), Gaps = 18/217 (8%)
Frame = +1
Query: 268 PLP-CTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLC 444
P+P A + +NQLP +LL + +H+P R L+ +C PVC W L+D LW
Sbjct: 19 PVPELEAEEALGLNQLPSELLLMLLSHMPPRTLIRHCCPVCRRWHALVDCQVLW------ 72
Query: 445 EGFVAEDWDQ------------PVADWK--VFYFLCSLR---RNLLRNPCAEDDMMSWKI 573
+ WD P+ D K + C R RNL+ + + M
Sbjct: 73 --LIILAWDHHALWPILQTCLPPIEDTKPSILGRFCVCRPVGRNLMSSNPEGEGMPCTPG 130
Query: 574 DSNGGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRP 753
G H + Q++DL+ EG W ELLD +
Sbjct: 131 PGQGWYH------------------------------KEKQILDLQEEGLWPELLDSGKL 160
Query: 754 DIVVKDWFAARADCGCTYHIRVQLGSADYIVLASFEP 864
+I V DW+ + YH+ VQL A+ +L P
Sbjct: 161 EICVSDWWNGQQGTDDLYHLIVQLPDANRSILVWASP 197
>ref|XP_003355939.1| PREDICTED: non-specific cytotoxic cell receptor protein 1 homolog
[Sus scrofa].
Length = 262
Score = 63.5 bits (153), Expect(2) = 7e-11
Identities = 40/121 (33%), Positives = 56/121 (46%)
Frame = +1
Query: 475 PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVK 654
P WK+ + L RNLLR+P E + G +E+L G K++
Sbjct: 75 PRLTWKLLFLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQQPLETLGNFRGWHIRTEKLQ 134
Query: 655 KYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSA 834
+ + +K Q +DL AEG WEELLD +P I V DW+ C Y + V L +A
Sbjct: 135 Q----NLSWTVKQQCVDLLAEGLWEELLDDEQPHITVMDWYEDSQLDTCVYELHVWLLAA 190
Query: 835 D 837
D
Sbjct: 191 D 191
Score = 21.2 bits (43), Expect(2) = 7e-11
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
+VSH F Y PGV
Sbjct: 216 QVSHVFRHYGPGV 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,042,073
Number of extensions: 700003
Number of successful extensions: 2603
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2589
Number of HSP's successfully gapped: 9
Length of query: 314
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 215
Effective length of database: 8,879,129
Effective search space: 1909012735
Effective search space used: 1909012735
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157176.1| F-box only protein 6 [Mus musculus]. 332 8e-94
Alignment gi|NP_056612.1| F-box only protein 6 [Mus musculus]. 332 8e-94
Alignment gi|NP_001157178.1| F-box only protein 6 [Mus musculus]. 332 8e-94
Alignment gi|NP_001157179.1| F-box only protein 6 [Mus musculus]. 332 8e-94
Alignment gi|NP_001157177.1| F-box only protein 6 [Mus musculus]. 332 8e-94
Alignment gi|NP_001155323.1| F-box only protein 44 isoform 1 [Mus musculu... 301 2e-84
Alignment gi|NP_775577.2| F-box only protein 44 isoform 1 [Mus musculus]. 301 2e-84
Alignment gi|NP_789818.1| F-box only protein 2 [Mus musculus]. 196 4e-51
Alignment gi|NP_001155324.1| F-box only protein 44 isoform 2 [Mus musculu... 189 2e-48
Alignment gi|NP_056611.2| F-box only protein 17 [Mus musculus]. 126 2e-29
>ref|NP_001157176.1| F-box only protein 6 [Mus musculus].
Length = 295
Score = 332 bits (852), Expect(2) = 8e-94
Identities = 152/206 (73%), Positives = 178/206 (86%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
+V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF +D
Sbjct: 1 MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60
Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
+PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61 EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120
Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180
Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
ADYIVLASFEPP VT QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206
Score = 30.4 bits (67), Expect(2) = 8e-94
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 903 EEVSHTFSGYPPGV 944
+E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218
>ref|NP_056612.1| F-box only protein 6 [Mus musculus].
Length = 295
Score = 332 bits (852), Expect(2) = 8e-94
Identities = 152/206 (73%), Positives = 178/206 (86%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
+V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF +D
Sbjct: 1 MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60
Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
+PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61 EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120
Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180
Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
ADYIVLASFEPP VT QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206
Score = 30.4 bits (67), Expect(2) = 8e-94
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 903 EEVSHTFSGYPPGV 944
+E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218
>ref|NP_001157178.1| F-box only protein 6 [Mus musculus].
Length = 295
Score = 332 bits (852), Expect(2) = 8e-94
Identities = 152/206 (73%), Positives = 178/206 (86%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
+V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF +D
Sbjct: 1 MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60
Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
+PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61 EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120
Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180
Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
ADYIVLASFEPP VT QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206
Score = 30.4 bits (67), Expect(2) = 8e-94
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 903 EEVSHTFSGYPPGV 944
+E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218
>ref|NP_001157179.1| F-box only protein 6 [Mus musculus].
Length = 295
Score = 332 bits (852), Expect(2) = 8e-94
Identities = 152/206 (73%), Positives = 178/206 (86%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
+V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF +D
Sbjct: 1 MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60
Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
+PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61 EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120
Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180
Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
ADYIVLASFEPP VT QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206
Score = 30.4 bits (67), Expect(2) = 8e-94
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 903 EEVSHTFSGYPPGV 944
+E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218
>ref|NP_001157177.1| F-box only protein 6 [Mus musculus].
Length = 295
Score = 332 bits (852), Expect(2) = 8e-94
Identities = 152/206 (73%), Positives = 178/206 (86%)
Frame = +1
Query: 292 LVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAEDWD 471
+V IN+LPE+ILLE+F H+PA QLL NCR VC LWRDLID+V+LWKRK L EGF +D
Sbjct: 1 MVHINELPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRKSLREGFFTKDRC 60
Query: 472 QPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKV 651
+PV DWKVFY LCSL+RNLLRNPCAE+++ SW+IDSNGG+ WKVE+LPG+ GT FPD+KV
Sbjct: 61 EPVEDWKVFYILCSLQRNLLRNPCAEENLSSWRIDSNGGDRWKVETLPGSCGTSFPDNKV 120
Query: 652 KKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGS 831
KKYFVTS+ MCLKSQ++DLKAEGY EEL+D FRPDIVVKDW A RADCGCTY +RVQL S
Sbjct: 121 KKYFVTSFEMCLKSQMVDLKAEGYCEELMDTFRPDIVVKDWVAPRADCGCTYQLRVQLAS 180
Query: 832 ADYIVLASFEPPAVTIPQWNDAQWKK 909
ADYIVLASFEPP VT QWNDA+W++
Sbjct: 181 ADYIVLASFEPPPVTFQQWNDAKWQE 206
Score = 30.4 bits (67), Expect(2) = 8e-94
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 903 EEVSHTFSGYPPGV 944
+E+SHTFS YPPGV
Sbjct: 205 QEISHTFSDYPPGV 218
>ref|NP_001155323.1| F-box only protein 44 isoform 1 [Mus musculus].
Length = 255
Score = 301 bits (770), Expect(2) = 2e-84
Identities = 139/208 (66%), Positives = 166/208 (79%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL+RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
+VKKYFVTSY CLKSQ++DLKAEGYWEEL+D RPDI VKDWFAAR DCG Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
S+ + L +F+P V I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPVMIQQKSDAKWRE 208
Score = 30.4 bits (67), Expect(2) = 2e-84
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220
>ref|NP_775577.2| F-box only protein 44 isoform 1 [Mus musculus].
Length = 255
Score = 301 bits (770), Expect(2) = 2e-84
Identities = 139/208 (66%), Positives = 166/208 (79%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL+RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
+VKKYFVTSY CLKSQ++DLKAEGYWEEL+D RPDI VKDWFAAR DCG Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
S+ + L +F+P V I Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPVMIQQKSDAKWRE 208
Score = 30.4 bits (67), Expect(2) = 2e-84
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220
>ref|NP_789818.1| F-box only protein 2 [Mus musculus].
Length = 297
Score = 196 bits (499), Expect(2) = 4e-51
Identities = 100/209 (47%), Positives = 131/209 (62%), Gaps = 2/209 (0%)
Frame = +1
Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
A A+ + +LPE +LL V LPA +L+ CR VC W++L+D LW KC EG V E
Sbjct: 45 AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPE 104
Query: 463 -DWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFP 639
D+ W+ FYFL RRNLLRNPC E+D+ W +GG+ W+VE LPG +G +F
Sbjct: 105 GSADEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWRVEELPGDNGVEFT 164
Query: 640 -DSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
D VKKYF +S+ C K+Q+IDL+AEGYWEELLD +P IVVKDW++ R D G Y +
Sbjct: 165 QDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELT 224
Query: 817 VQLGSADYIVLASFEPPAVTIPQWNDAQW 903
V+L S + VLA F V +P+ D W
Sbjct: 225 VRLLSENEDVLAEFATGQVAVPE--DGSW 251
Score = 23.9 bits (50), Expect(2) = 4e-51
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
E+SHTF Y PGV
Sbjct: 253 EISHTFIDYGPGV 265
>ref|NP_001155324.1| F-box only protein 44 isoform 2 [Mus musculus].
Length = 224
Score = 189 bits (481), Expect = 2e-48
Identities = 85/122 (69%), Positives = 100/122 (81%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+F H+PARQLLL CRPVCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFIHIPARQLLLRCRPVCSLWRDLIDLVTLWKRKCLQEGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL+RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLQRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSKDQRKEFPND 120
Query: 646 KV 651
+V
Sbjct: 121 QV 122
>ref|NP_056611.2| F-box only protein 17 [Mus musculus].
Length = 286
Score = 126 bits (317), Expect = 2e-29
Identities = 71/224 (31%), Positives = 108/224 (48%), Gaps = 24/224 (10%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW---------------- 426
+++ +LP +L++V +H+P R L+ CRPVC WRDL+D ++W
Sbjct: 16 LALTKLPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPSIWLLQLARDRSAEGRALY 75
Query: 427 --KRKCLCEGFVAEDWDQ------PVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSN 582
++C + D D P F RNL+ N C E W+++ +
Sbjct: 76 ALAQRCPADADADADADGNRHDEFPFCALARFCLRAPFGRNLIHNSCGEQGFRGWEVE-H 134
Query: 583 GGNHWKVESLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIV 762
GGN W VE + T P + + FVTS+ C K QL+DL EG W+ELLD + +I
Sbjct: 135 GGNGWAVEK----NLTLVPGAPSQTCFVTSFEWCSKRQLVDLVKEGVWQELLDSGQIEIC 190
Query: 763 VKDWFAARADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
+ DW+ AR +CGC Y +RV+L + F + QW +
Sbjct: 191 IADWWGARENCGCIYRLRVRLLDEYENEVVKFSASPNPVLQWTE 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,105,038
Number of extensions: 908585
Number of successful extensions: 3393
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3346
Number of HSP's successfully gapped: 22
Length of query: 314
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 213
Effective length of database: 12,583,923
Effective search space: 2680375599
Effective search space used: 2680375599
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060908.1| F-box only protein 6 [Homo sapiens]. 373 e-104
Alignment gi|NP_149438.2| F-box only protein 44 isoform 1 [Homo sapiens]. 301 2e-84
Alignment gi|NP_001014765.1| F-box only protein 44 isoform 1 [Homo sapien... 301 2e-84
Alignment gi|NP_036300.2| F-box only protein 2 [Homo sapiens]. 200 2e-52
Alignment gi|NP_904319.1| F-box only protein 44 isoform 2 [Homo sapiens]. 190 1e-49
Alignment gi|NP_904320.1| F-box only protein 44 isoform 2 [Homo sapiens]. 190 1e-49
Alignment gi|NP_849142.1| F-box only protein 27 [Homo sapiens]. 134 9e-32
Alignment gi|NP_680474.1| F-box only protein 17 isoform 1 [Homo sapiens]. 131 8e-31
Alignment gi|NP_079183.4| F-box only protein 17 isoform 2 [Homo sapiens]. 131 8e-31
Alignment gi|NP_001001414.1| non-specific cytotoxic cell receptor protein... 62 4e-10
>ref|NP_060908.1| F-box only protein 6 [Homo sapiens].
Length = 293
Score = 373 bits (957), Expect(2) = e-104
Identities = 171/210 (81%), Positives = 188/210 (89%)
Frame = +1
Query: 274 PCTAMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGF 453
P + AL SIN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDL+TLWKRKCL EGF
Sbjct: 4 PHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLREGF 63
Query: 454 VAEDWDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTD 633
+ +DWDQPVADWK+FYFL SL RNLLRNPCAE+DM +W+ID NGG+ WKVESLPGAHGTD
Sbjct: 64 ITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAHGTD 123
Query: 634 FPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHI 813
FPD KVKKYFVTSY MCLKSQL+DL AEGYWEELLD FRPDIVVKDWFAARADCGCTY +
Sbjct: 124 FPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCTYQL 183
Query: 814 RVQLGSADYIVLASFEPPAVTIPQWNDAQW 903
+VQL SADY VLASFEPP VTI QWN+A W
Sbjct: 184 KVQLASADYFVLASFEPPPVTIQQWNNATW 213
Score = 24.3 bits (51), Expect(2) = e-104
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVS+TFS YP GV
Sbjct: 215 EVSYTFSDYPRGV 227
>ref|NP_149438.2| F-box only protein 44 isoform 1 [Homo sapiens].
Length = 255
Score = 301 bits (772), Expect(2) = 2e-84
Identities = 140/208 (67%), Positives = 166/208 (79%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
+VKKYFVTSY CLKSQ++DLKAEGYWEEL+D RPDI VKDWFAAR DCG Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
S+ + L +F+P TI Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPATIQQKSDAKWRE 208
Score = 30.4 bits (67), Expect(2) = 2e-84
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220
>ref|NP_001014765.1| F-box only protein 44 isoform 1 [Homo sapiens].
Length = 255
Score = 301 bits (772), Expect(2) = 2e-84
Identities = 140/208 (67%), Positives = 166/208 (79%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 646 KVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQL 825
+VKKYFVTSY CLKSQ++DLKAEGYWEEL+D RPDI VKDWFAAR DCG Y + VQL
Sbjct: 121 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL 180
Query: 826 GSADYIVLASFEPPAVTIPQWNDAQWKK 909
S+ + L +F+P TI Q +DA+W++
Sbjct: 181 LSSAHAPLGTFQPDPATIQQKSDAKWRE 208
Score = 30.4 bits (67), Expect(2) = 2e-84
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
EVSHTFS YPPGV
Sbjct: 208 EVSHTFSNYPPGV 220
>ref|NP_036300.2| F-box only protein 2 [Homo sapiens].
Length = 296
Score = 200 bits (508), Expect(2) = 2e-52
Identities = 101/206 (49%), Positives = 131/206 (63%), Gaps = 2/206 (0%)
Frame = +1
Query: 283 AMALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAE 462
A A +++LPE +LL V LPA +L+ CR VC W++L+D LW KC EG V E
Sbjct: 41 AAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPE 100
Query: 463 DWDQPVAD-WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFP 639
+ D W+ FYFL RRNLLRNPC E+D+ W +GG+ W+VE LPG G +F
Sbjct: 101 GGVEEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFT 160
Query: 640 -DSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIR 816
D VKKYF +S+ C K+Q+IDL+AEGYWEELLD +P IVVKDW++ R+D GC Y +
Sbjct: 161 HDESVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELT 220
Query: 817 VQLGSADYIVLASFEPPAVTIPQWND 894
V+L S VLA F V +PQ +D
Sbjct: 221 VKLLSEHENVLAEFSSGQVAVPQDSD 246
Score = 25.0 bits (53), Expect(2) = 2e-52
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
E+SHTF+ Y PGV
Sbjct: 252 EISHTFTDYGPGV 264
>ref|NP_904319.1| F-box only protein 44 isoform 2 [Homo sapiens].
Length = 224
Score = 190 bits (483), Expect(2) = 1e-49
Identities = 86/123 (69%), Positives = 101/123 (82%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 646 KVK 654
+V+
Sbjct: 121 QVR 123
Score = 25.0 bits (53), Expect(2) = 1e-49
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 774 VRRQSRLWLHLPHPSTXXXXXXXXXXXXXXXXCDHPSVERCPVE 905
VR Q+RL + +P + DHP+ ERC VE
Sbjct: 122 VRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVE 165
>ref|NP_904320.1| F-box only protein 44 isoform 2 [Homo sapiens].
Length = 224
Score = 190 bits (483), Expect(2) = 1e-49
Identities = 86/123 (69%), Positives = 101/123 (82%)
Frame = +1
Query: 286 MALVSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLWKRKCLCEGFVAED 465
MA+ +IN+LPE+ILLE+FTH+PARQLLLNCR VCSLWRDLIDLVTLWKRKCL EGF+ ED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 466 WDQPVADWKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDS 645
WDQPVADWK+FYFL SL RNLL NPCAE+ W +D NGG+ WKVE L +FP+
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 646 KVK 654
+V+
Sbjct: 121 QVR 123
Score = 25.0 bits (53), Expect(2) = 1e-49
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 774 VRRQSRLWLHLPHPSTXXXXXXXXXXXXXXXXCDHPSVERCPVE 905
VR Q+RL + +P + DHP+ ERC VE
Sbjct: 122 VRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVE 165
>ref|NP_849142.1| F-box only protein 27 [Homo sapiens].
Length = 283
Score = 134 bits (338), Expect = 9e-32
Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 13/213 (6%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---- 450
+ ++QLP +LL V +H+P R LL CR VC WR L+D LW R G
Sbjct: 24 LDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALWLLILARDHGATGRALL 83
Query: 451 FVAEDWDQPVADWKVFYF--LCSLR---RNLLRNPCAEDDMMSWKIDSNGGNHWKVESLP 615
+A P + + C+ R RNL+RNPC ++ + W + +GG+ W VE
Sbjct: 84 HLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCGQEGLRKWMV-QHGGDGWVVEE-- 140
Query: 616 GAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADC 795
+ T P + + FVTS+ C K Q++DL+ EG W ELLD R +I V DW+ AR D
Sbjct: 141 --NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLDSGRIEICVSDWWGARHDS 198
Query: 796 GCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
GC Y + VQL A+ VL F IPQWN+
Sbjct: 199 GCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNN 231
>ref|NP_680474.1| F-box only protein 17 isoform 1 [Homo sapiens].
Length = 287
Score = 131 bits (330), Expect = 8e-31
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---F 453
++++ LP +L++V +H+P R L+ CRPVC WRD++D T+W R EG +
Sbjct: 25 LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALY 84
Query: 454 VAEDWDQPVADWKVFYFLCSLRR---------NLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
P + K + LC+L R NL+ N C E W+++ +GGN W +E
Sbjct: 85 AVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 143
Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
+ T P + + FVTS+ C K QL+DL EG W+ELLD + +I V DW+ AR
Sbjct: 144 K----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEICVADWWGAR 199
Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
+CGC Y +RV+L + F + QW +
Sbjct: 200 ENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTE 235
>ref|NP_079183.4| F-box only protein 17 isoform 2 [Homo sapiens].
Length = 278
Score = 131 bits (330), Expect = 8e-31
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Frame = +1
Query: 295 VSINQLPESILLEVFTHLPARQLLLNCRPVCSLWRDLIDLVTLW----KRKCLCEG---F 453
++++ LP +L++V +H+P R L+ CRPVC WRD++D T+W R EG +
Sbjct: 16 LALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALY 75
Query: 454 VAEDWDQPVADWKVFYFLCSLRR---------NLLRNPCAEDDMMSWKIDSNGGNHWKVE 606
P + K + LC+L R NL+ N C E W+++ +GGN W +E
Sbjct: 76 AVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 134
Query: 607 SLPGAHGTDFPDSKVKKYFVTSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAAR 786
+ T P + + FVTS+ C K QL+DL EG W+ELLD + +I V DW+ AR
Sbjct: 135 K----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEICVADWWGAR 190
Query: 787 ADCGCTYHIRVQLGSADYIVLASFEPPAVTIPQWND 894
+CGC Y +RV+L + F + QW +
Sbjct: 191 ENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTE 226
>ref|NP_001001414.1| non-specific cytotoxic cell receptor protein 1 homolog [Homo
sapiens].
Length = 275
Score = 61.6 bits (148), Expect(2) = 4e-10
Identities = 40/117 (34%), Positives = 54/117 (46%)
Frame = +1
Query: 487 WKVFYFLCSLRRNLLRNPCAEDDMMSWKIDSNGGNHWKVESLPGAHGTDFPDSKVKKYFV 666
WK+ L RNLLR+P E + G +E+L G K+++
Sbjct: 92 WKLLLLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQRPLETLGNFRGWYIRTEKLQQ--- 148
Query: 667 TSYGMCLKSQLIDLKAEGYWEELLDKFRPDIVVKDWFAARADCGCTYHIRVQLGSAD 837
+ +K Q +DL AEG WEELLD +P I V DWF C Y + V L +AD
Sbjct: 149 -NQSWTVKQQCVDLLAEGLWEELLDDEQPAITVMDWFEDSRLDACVYELHVWLLAAD 204
Score = 21.2 bits (43), Expect(2) = 4e-10
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 906 EVSHTFSGYPPGV 944
+VSH F Y PGV
Sbjct: 229 QVSHVFRHYGPGV 241
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,056,022
Number of extensions: 1092738
Number of successful extensions: 3820
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3804
Number of HSP's successfully gapped: 17
Length of query: 314
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,934,836
Effective search space: 3166185232
Effective search space used: 3166185232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014490
(944 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209 587 e-165
Sscrofa_Chr06 587 e-165
Sscrofa_Chr13 64 1e-07
Sscrofa_Chr09 64 1e-07
>gb|GL894325.2| Sus scrofa unplaced genomic scaffold ChrUScaf2209
Length = 42327
Score = 587 bits (296), Expect = e-165
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 255 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10361 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 10420
Query: 315 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10421 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 10480
Query: 375 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10481 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 10540
Query: 435 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10541 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 10600
Query: 495 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10601 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 10656
Score = 240 bits (121), Expect = 1e-60
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 549 agatgatatgatgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 608
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12984 agatgatatgacgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 13043
Query: 609 cctccctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 668
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13044 ccttcctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 13103
Query: 669 atcttacgg 677
|||||||||
Sbjct: 13104 atcttacgg 13112
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 677 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagagctgc 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13637 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagaactgc 13696
Query: 737 tggacaagttccggccagacatcgtggtcaaggactggt 775
|||||||||||||||||||||||||||||||||||||||
Sbjct: 13697 tggacaagttccggccagacatcgtggtcaaggactggt 13735
>Sscrofa_Chr06
|| Length = 157765593
Score = 587 bits (296), Expect = e-165
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 255 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687449 ggcttgtgtgtgccccctgccctgcacagccatggccctggtcagcatcaaccagctgcc 65687508
Query: 315 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687509 cgagagcatcctgctggaggtgttcacgcacctgcccgcccgccagctgctgctgaactg 65687568
Query: 375 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687569 ccgccccgtctgcagcctctggcgtgacctcattgacctcgtgaccctctggaagcgcaa 65687628
Query: 435 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687629 atgcctatgtgagggcttcgtcgctgaggactgggaccagcccgtggccgactggaaggt 65687688
Query: 495 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65687689 cttctactttctgtgcagcctccgcaggaacctcctgcgcaacccgtgtgctgaag 65687744
Score = 311 bits (157), Expect = 4e-82
Identities = 241/269 (89%)
Strand = Plus / Plus
Query: 282 agccatggccctggtcagcatcaaccagctgcccgagagcatcctgctggaggtgttcac 341
|||||||||| ||| || ||||||| ||||||| || | ||||||||||||| |||||||
Sbjct: 65668017 agccatggccgtgggcaacatcaacgagctgccggaaaacatcctgctggagttgttcac 65668076
Query: 342 gcacctgcccgcccgccagctgctgctgaactgccgccccgtctgcagcctctggcgtga 401
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 65668077 gcacgtgcccgcccgccagctgctgctgcgctgccgcctggtctgcagcctctggcgtga 65668136
Query: 402 cctcattgacctcgtgaccctctggaagcgcaaatgcctatgtgagggcttcgtcgctga 461
|||||| |||||||||||||||||||||||||||||||| | |||||||| || ||||
Sbjct: 65668137 cctcatcgacctcgtgaccctctggaagcgcaaatgcctgcgcgagggctttatcactga 65668196
Query: 462 ggactgggaccagcccgtggccgactggaaggtcttctactttctgtgcagcctccgcag 521
||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||
Sbjct: 65668197 ggactgggaccagcccgtggccgactggaagatcttctatttccttcgcagcctccgcag 65668256
Query: 522 gaacctcctgcgcaacccgtgtgctgaag 550
||||||||||| |||||| ||||| ||||
Sbjct: 65668257 gaacctcctgcacaacccatgtgccgaag 65668285
Score = 287 bits (145), Expect = 5e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 112 aggttagcattacacgaaggtttcaacctggatccagagaagactccccaacaactccaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65676520 aggttagcattacacgaaggtttcaacctggatccagagaagactccccaacaactccaa 65676579
Query: 172 ggctggtgagcaaacaggtgctggtacctacagagaaagcccggagctcactcattgctt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65676580 ggctggtgagcaaacaggtgctggtacctacagagaaagcccggagctcactcattgctt 65676639
Query: 232 tcttgccaactttggagtttgaggg 256
|||||||||||||||||||||||||
Sbjct: 65676640 tcttgccaactttggagtttgaggg 65676664
Score = 240 bits (121), Expect = 1e-60
Identities = 127/129 (98%)
Strand = Plus / Plus
Query: 549 agatgatatgatgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 608
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65690261 agatgatatgacgtcctggaaaattgactccaatggggggaaccactggaaggtagagag 65690320
Query: 609 cctccctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 668
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65690321 ccttcctggagcccacggcacagattttcccgactccaaagtcaagaagtactttgtcac 65690380
Query: 669 atcttacgg 677
|||||||||
Sbjct: 65690381 atcttacgg 65690389
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 ggtcaggaggcggctcccgcttccccagagggaggaggaagccgagaggagatgggtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65674325 ggtcaggaggcggctcccgcttccccagagggaggaggaagccgagaggagatgggtccc 65674384
Query: 61 cgccgctgagccgcccaccgccgggaaggaaaggctgacgttcaggcgacaaggt 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65674385 cgccgctgagccgcccaccgccgggaaggaaaggctgacgttcaggcgacaaggt 65674439
Score = 216 bits (109), Expect = 2e-53
Identities = 121/125 (96%)
Strand = Plus / Plus
Query: 773 ggttcgccgccagagcagactgtggttgcacctaccacatccgagtacagctgggctccg 832
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 65691747 ggttcgccgccagagcagactgtggctgcacctaccacatccgagtacagctggcctccg 65691806
Query: 833 ctgactacatcgtcctggcctccttcgagccccccgctgtgaccatccctcagtggaacg 892
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 65691807 ctgactacatcgtcctggcctccttcgagcccccgcctgtgaccatccctcagtggaacg 65691866
Query: 893 atgcc 897
|||||
Sbjct: 65691867 atgcc 65691871
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 677 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagagctgc 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65690861 gcatgtgcctcaagtcccagctgatagaccttaaagctgagggctactgggaagaactgc 65690920
Query: 737 tggacaagttccggccagacatcgtggtcaaggactggt 775
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65690921 tggacaagttccggccagacatcgtggtcaaggactggt 65690959
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 1e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 167 tccaaggctggtgagcaaacaggtgctggtacctacagag 206
||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 133624631 tccaaggctggtgagcaaacaagtgctggtacccacagag 133624592
>Sscrofa_Chr09
|| Length = 153670197
Score = 63.9 bits (32), Expect = 1e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 143 atccagagaagactccccaacaactccaaggctggtgagcaaacaggtgctggtacctac 202
|||||| |||||| ||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct: 25623144 atccagggaagaccccccagtaactctgaggctggtgagcaaacaggttctggtacccac 25623085
Query: 203 agag 206
||||
Sbjct: 25623084 agag 25623081
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,464,253
Number of extensions: 177
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 12
Length of query: 944
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 923
Effective length of database: 2,808,413,156
Effective search space: 2592165342988
Effective search space used: 2592165342988
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)