Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003372.1| pantetheinase precursor [Canis lupus familia... 369 e-102
Alignment gi|XP_534255.2| PREDICTED: similar to biotinidase precursor [Ca... 247 2e-65
Alignment gi|XP_535718.2| PREDICTED: similar to nitrilase family, member ... 52 9e-07
>ref|NP_001003372.1| pantetheinase precursor [Canis lupus familiaris].
Length = 514
Score = 369 bits (948), Expect = e-102
Identities = 179/272 (65%), Positives = 219/272 (80%), Gaps = 4/272 (1%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MI S +AV L ++ V + DTF AAVYEHAV LPN T PVS ++AL +MN+N+D+
Sbjct: 1 MITSRLLVYVAVLVLCVIKVSSRDTFIAAVYEHAVKLPNATLVPVSHEEALAVMNQNLDL 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE AI AA QGA IIVTPED +YGW F+RETI+PYLED+PDP NWIPC +P RFG+TP
Sbjct: 61 LEAAITSAANQGAHIIVTPEDGIYGWNFSRETIYPYLEDIPDPGVNWIPCNNPKRFGYTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLAK+NSIYV+ANIGDKKPCN+ DS+CP +G YQYNT+VV+DS+GKLVARYHK+
Sbjct: 121 VQERLSCLAKDNSIYVVANIGDKKPCNASDSQCPLDGRYQYNTDVVFDSQGKLVARYHKH 180
Query: 733 HLY-HELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWM 909
+L+ E QF+VP+KPE+VTF+T FG+FG+FTCFDILF DPAVTLV+DFHVDTI+FP AWM
Sbjct: 181 NLFMGENQFNVPKKPEIVTFDTIFGRFGVFTCFDILFYDPAVTLVKDFHVDTIVFPTAWM 240
Query: 910 NVLPLLTAIESHRLGQWA*ELN---LCSHVHH 996
NVLP L+AI+ H WA + L S++HH
Sbjct: 241 NVLPHLSAIQFH--SAWAMGMGVNFLASNIHH 270
>ref|XP_534255.2| PREDICTED: similar to biotinidase precursor [Canis familiaris].
Length = 550
Score = 247 bits (630), Expect = 2e-65
Identities = 124/258 (48%), Positives = 174/258 (67%), Gaps = 3/258 (1%)
Frame = +1
Query: 241 ILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAAEQGAQII 420
+ + + + AAVYEH +IL + VS AL LMN+N+DI E+ + AA++G QII
Sbjct: 56 VAETQEAEHYVAAVYEHQLILTPNPLALVSRKQALELMNQNLDIYEQQVMIAAQKGVQII 115
Query: 421 VTPEDALYGWKFTRETIFPYLEDVPDPQK-NWIPCQDPHRFGHTPVQVRLSCLAKNNSIY 597
V PED ++G+ FTR +++P+L+ +P P+ W PC +PHRF T V RLSC+A ++
Sbjct: 116 VFPEDGIHGFNFTRTSVYPFLDFMPSPRLVRWNPCLEPHRFSDTEVLQRLSCMAVKGDMF 175
Query: 598 VLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLYHELQFDVPEKPE 777
++AN+G K+PC S+D CP +G YQ+NTNVV+ + G LV RY K++LY E FD P K +
Sbjct: 176 LVANLGTKQPCQSNDPGCPNDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEGAFDAPLKVD 235
Query: 778 VVTFNTPF-GKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAIESHRLG 954
V F+TPF GKFGIFTCFDILF DPA+ L++D V +++P AWMN LPLL AI+ R
Sbjct: 236 HVIFDTPFAGKFGIFTCFDILFFDPAIRLLRDSEVKHVVYPTAWMNQLPLLAAIQIQRAF 295
Query: 955 QWA*ELN-LCSHVHHVRL 1005
A +N L +++HH L
Sbjct: 296 AIAFGINFLAANIHHPSL 313
>ref|XP_535718.2| PREDICTED: similar to nitrilase family, member 2 [Canis
familiaris].
Length = 323
Score = 52.0 bits (123), Expect = 9e-07
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 14/188 (7%)
Frame = +1
Query: 385 IKQAAEQGAQIIVTPE--DALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTPVQ 558
+++AA QGA+++ PE ++ YG K+ E Y E +P
Sbjct: 75 VREAARQGAKVVSLPECFNSPYGTKYFPE----YAEKIPGESTQ---------------- 114
Query: 559 VRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHL 738
+LS +AK S+Y++ ++ YNT V+ +G L+ +Y K HL
Sbjct: 115 -KLSEVAKECSVYLIGGSIPEEDAGK-----------LYNTCAVFGPDGTLLVKYRKLHL 162
Query: 739 YHELQFDVPEK------------PEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVD 882
+ D+P K TF+TP+ + G+ C+D+ F + A Q
Sbjct: 163 F---DIDIPGKITFHESKTLTPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQR-GCQ 218
Query: 883 TILFPAAW 906
+++PAA+
Sbjct: 219 LLVYPAAF 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,298,325
Number of extensions: 1153331
Number of successful extensions: 2966
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2950
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014500
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157392.1| vanin 2 [Bos taurus]. 379 e-105
Alignment gi|NP_001019727.2| pantetheinase precursor [Bos taurus]. 361 e-100
Alignment gi|NP_001095676.1| biotinidase precursor [Bos taurus]. 246 2e-65
Alignment gi|NP_001033222.1| omega-amidase NIT2 [Bos taurus]. 51 2e-06
>ref|NP_001157392.1| vanin 2 [Bos taurus].
Length = 467
Score = 379 bits (974), Expect = e-105
Identities = 176/219 (80%), Positives = 196/219 (89%), Gaps = 1/219 (0%)
Frame = +1
Query: 352 MNKNMDILERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDP 531
MNKN+DILE+AIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLE++PDPQ NWIPCQ+P
Sbjct: 1 MNKNIDILEKAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLENIPDPQVNWIPCQEP 60
Query: 532 HRFGHTPVQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKL 711
HRFGHTPVQ RLSCLAKNNSIYV+AN+GDKKPCNSH++ CP NG+YQYNTNVVYD++GKL
Sbjct: 61 HRFGHTPVQARLSCLAKNNSIYVVANMGDKKPCNSHNTTCPSNGHYQYNTNVVYDAKGKL 120
Query: 712 VARYHKYHLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTIL 891
VARYHKYHLY E+QFDVPEKPE+VTFNT FGKFGIFTCFDILF DPAVTLV+D HVDTIL
Sbjct: 121 VARYHKYHLYREIQFDVPEKPELVTFNTTFGKFGIFTCFDILFHDPAVTLVKDSHVDTIL 180
Query: 892 FPAAWMNVLPLLTAIESHRLGQWA*ELN-LCSHVHHVRL 1005
FP AWMNVLP +TAIE H +N L ++ H+V L
Sbjct: 181 FPTAWMNVLPFMTAIEFHSAWAMGMRVNLLAANTHNVSL 219
>ref|NP_001019727.2| pantetheinase precursor [Bos taurus].
Length = 510
Score = 361 bits (927), Expect = e-100
Identities = 175/270 (64%), Positives = 215/270 (79%), Gaps = 2/270 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MI S +AV + +LDTF AAVYEHAVILPN T PVS ++AL +MN+N+D+
Sbjct: 1 MIMSQLLNYVAVLFFCVSRASSLDTFIAAVYEHAVILPNATLVPVSPEEALAVMNRNLDL 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE A+ A++QGA IIVTPED +YG+ FTRE+I+PYLED+PDPQ NWIPC +P RFGHTP
Sbjct: 61 LEGAVTSASKQGAHIIVTPEDGIYGFNFTRESIYPYLEDIPDPQVNWIPCNNPDRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLAK+NSIY++ANIGDKK CN+ D +CPP+G YQYNT+VV+D++GKLVARYHK
Sbjct: 121 VQQRLSCLAKDNSIYIVANIGDKKSCNASDPQCPPDGRYQYNTDVVFDTKGKLVARYHKQ 180
Query: 733 HLY-HELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWM 909
+L+ +E QF+ P++PEVVTFNT FGKFGIFTCFDILF DPAVTLV+D VDTILFP AWM
Sbjct: 181 NLFLNEDQFNAPKEPEVVTFNTTFGKFGIFTCFDILFHDPAVTLVRDSRVDTILFPTAWM 240
Query: 910 NVLPLLTAIESHRLGQWA*ELN-LCSHVHH 996
NVLP L+AIE H +N L S++H+
Sbjct: 241 NVLPHLSAIEFHSAWAMGMRVNFLASNLHY 270
>ref|NP_001095676.1| biotinidase precursor [Bos taurus].
Length = 525
Score = 246 bits (629), Expect = 2e-65
Identities = 123/249 (49%), Positives = 168/249 (67%), Gaps = 3/249 (1%)
Frame = +1
Query: 268 FKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAAEQGAQIIVTPEDALYG 447
+ AAVYEH L D S + AL LM++N+D+ E+ + AA +GAQIIV PED ++G
Sbjct: 40 YVAAVYEHQSFLSPDPLALTSREQALELMHRNLDVYEQQVTTAARKGAQIIVFPEDGIHG 99
Query: 448 WKFTRETIFPYLEDVPDPQK-NWIPCQDPHRFGHTPVQVRLSCLAKNNSIYVLANIGDKK 624
+ FTR +I+P+L+ +P P+ W PC +PHRF T V RLSC+A ++++AN+G K+
Sbjct: 100 FNFTRTSIYPFLDFMPSPRSVRWNPCLEPHRFNDTEVLQRLSCMAMKGEMFLVANLGTKQ 159
Query: 625 PCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLYHELQFDVPEKPEVVTFNTPF- 801
PC+S D CP +G YQ+NTNVV+ S G LV RY K++LY E FD P + + F+TPF
Sbjct: 160 PCHSSDPGCPSDGRYQFNTNVVFSSNGTLVDRYRKHNLYFEAAFDTPLEVDHTVFDTPFA 219
Query: 802 GKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAIESHRLGQWA*ELN-L 978
GKFG+FTCFDILF DPAV L+QD V +++P AWMN LPLL AI+ R A +N L
Sbjct: 220 GKFGVFTCFDILFFDPAVRLLQDSEVKHVVYPTAWMNQLPLLAAIQIQRGFAIAFVINLL 279
Query: 979 CSHVHHVRL 1005
+++HH L
Sbjct: 280 AANIHHPSL 288
>ref|NP_001033222.1| omega-amidase NIT2 [Bos taurus].
Length = 276
Score = 50.8 bits (120), Expect = 2e-06
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Frame = +1
Query: 385 IKQAAEQGAQIIVTPE--DALYGWKFTRETIFP-YLEDVPDPQKNWIPCQDPHRFGHTPV 555
I++A++QGAQI+ PE ++ YG K+ FP Y E +P
Sbjct: 28 IREASKQGAQIVSLPECFNSPYGTKY-----FPDYAEKIPGDSTQ--------------- 67
Query: 556 QVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYH 735
+LS +AK S+YV+ +K YNT V+ +G L+ ++ K H
Sbjct: 68 --KLSEVAKECSMYVIGGSIPEKDAGK-----------LYNTCAVFGPDGTLLVKHRKLH 114
Query: 736 LYHELQFDVPEK------------PEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQ 867
L+ DVP K F+TP+ + G+ C+DI F + A Q
Sbjct: 115 LF---DIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQ 167
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,520,747
Number of extensions: 1117683
Number of successful extensions: 3068
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 4
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925409.1| PREDICTED: vascular non-inflammatory molecul... 527 e-150
Alignment gi|XP_003121244.1| PREDICTED: vascular non-inflammatory molecul... 527 e-150
Alignment gi|XP_001925491.1| PREDICTED: vascular non-inflammatory molecul... 373 e-103
Alignment gi|NP_999298.1| pantetheinase precursor [Sus scrofa]. 352 2e-97
Alignment gi|XP_003132114.2| PREDICTED: biotinidase-like [Sus scrofa]. 153 2e-37
Alignment gi|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scro... 55 8e-08
>ref|XP_001925409.1| PREDICTED: vascular non-inflammatory molecule 2 isoform 1 [Sus
scrofa].
Length = 521
Score = 527 bits (1358), Expect = e-150
Identities = 255/272 (93%), Positives = 260/272 (95%), Gaps = 1/272 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI
Sbjct: 1 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LERAIKQAAEQG+QIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDP RFGHTP
Sbjct: 61 LERAIKQAAEQGSQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPRRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY
Sbjct: 121 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 180
Query: 733 HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN 912
HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN
Sbjct: 181 HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN 240
Query: 913 VLPLLTAIESHRLGQWA*ELN-LCSHVHHVRL 1005
VLPLLTAIE H +N L +++HHVRL
Sbjct: 241 VLPLLTAIEFHSAWAMGMRVNLLAANIHHVRL 272
>ref|XP_003121244.1| PREDICTED: vascular non-inflammatory molecule 2 isoform 2 [Sus
scrofa].
Length = 521
Score = 527 bits (1358), Expect = e-150
Identities = 255/272 (93%), Positives = 260/272 (95%), Gaps = 1/272 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI
Sbjct: 1 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LERAIKQAAEQG+QIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDP RFGHTP
Sbjct: 61 LERAIKQAAEQGSQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPRRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY
Sbjct: 121 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 180
Query: 733 HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN 912
HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN
Sbjct: 181 HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN 240
Query: 913 VLPLLTAIESHRLGQWA*ELN-LCSHVHHVRL 1005
VLPLLTAIE H +N L +++HHVRL
Sbjct: 241 VLPLLTAIEFHSAWAMGMRVNLLAANIHHVRL 272
>ref|XP_001925491.1| PREDICTED: vascular non-inflammatory molecule 3 [Sus scrofa].
Length = 501
Score = 373 bits (957), Expect = e-103
Identities = 179/270 (66%), Positives = 217/270 (80%), Gaps = 2/270 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MI S A+ AL++L V ALDTF AAVYEHAV LPN T+TPV +ALLLM+KN+D+
Sbjct: 1 MIVSCVPKYTAILALLVLGVGALDTFIAAVYEHAVTLPNRTETPVLEKEALLLMHKNIDV 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE A+K AA QGA IIVTPED +YGW FTRETI+PYLED+PDP NWIPC+DP RFG+TP
Sbjct: 61 LETAVKLAARQGAHIIVTPEDGIYGWVFTRETIYPYLEDIPDPGVNWIPCKDPQRFGYTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLAK+NSIYV+ANIGDKKPCN+ D +CPP+G YQ+NT+VV+DSEG+LVARYHKY
Sbjct: 121 VQERLSCLAKHNSIYVVANIGDKKPCNASDPQCPPDGRYQFNTDVVFDSEGRLVARYHKY 180
Query: 733 HLY-HELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWM 909
+L+ E+QFD P+ E VTF+TPFGKFGIFTCFDI DPAV LV++FHVD++L+PAAW
Sbjct: 181 NLFAPEIQFDFPKDSEFVTFDTPFGKFGIFTCFDIFSHDPAVVLVEEFHVDSLLYPAAWY 240
Query: 910 NVLPLLTAIESHRLGQWA*ELN-LCSHVHH 996
N LPLL+A+ H A +N L ++ HH
Sbjct: 241 NTLPLLSAVPFHSAWARAMRVNLLAANTHH 270
>ref|NP_999298.1| pantetheinase precursor [Sus scrofa].
Length = 513
Score = 352 bits (903), Expect = 2e-97
Identities = 170/269 (63%), Positives = 211/269 (78%), Gaps = 2/269 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
MI S +A+ +L +LDTF AAVYEHA ILP+ TPVS ++AL+LMN+N+D+
Sbjct: 1 MITSPLLAYVAILFFCVLKASSLDTFIAAVYEHAAILPDAPLTPVSHEEALMLMNRNLDL 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE A+ AA+QGA IIVTPED +YG+ F+RE+I+ YLED+PDP NWIPC +P RFGHTP
Sbjct: 61 LEGAVTSAAKQGAHIIVTPEDGVYGFFFSRESIYSYLEDIPDPHVNWIPCTNPSRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLA++NSIY++ANIGDKKPCN+ D CP +G YQYNT+VV+DSEG+LVARYHK
Sbjct: 121 VQKRLSCLARDNSIYIVANIGDKKPCNASDPDCPHDGRYQYNTDVVFDSEGRLVARYHKQ 180
Query: 733 HLY-HELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWM 909
+L+ E QFD P++PE+VTF+T FG+FGIFTCF ILF DPAVTLV+DF VDTILFP AWM
Sbjct: 181 NLFLGEDQFDAPKEPEIVTFDTTFGRFGIFTCFGILFHDPAVTLVKDFQVDTILFPTAWM 240
Query: 910 NVLPLLTAIESHRLGQWA*ELN-LCSHVH 993
NVLP LTAIE H +N L +++H
Sbjct: 241 NVLPHLTAIEFHSAWAMGMRVNFLAANIH 269
>ref|XP_003132114.2| PREDICTED: biotinidase-like [Sus scrofa].
Length = 414
Score = 153 bits (386), Expect = 2e-37
Identities = 76/150 (50%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
Frame = +1
Query: 562 RLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLY 741
RLSC+A ++++AN+G K+PC+S D CP +G YQ+NTNVV+ S G LV+RY K++LY
Sbjct: 28 RLSCMAIKGQMFLVANLGTKEPCHSSDPGCPDDGRYQFNTNVVFSSNGTLVSRYRKHNLY 87
Query: 742 HELQFDVPEKPEVVTFNTPF-GKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVL 918
E FD P + + F+TPF GKFG FTCFDILF +PAV++++D V I++P AWMN L
Sbjct: 88 FEAAFDTPLEVDHSIFDTPFAGKFGTFTCFDILFFEPAVSILRDPEVKHIVYPTAWMNQL 147
Query: 919 PLLTAIESHRLGQWA*ELN-LCSHVHHVRL 1005
PLL AI+ R A +N L +++HH L
Sbjct: 148 PLLAAIQIQRGFSIAFGINFLAANIHHPSL 177
>ref|XP_003132757.2| PREDICTED: omega-amidase NIT2-like [Sus scrofa].
Length = 230
Score = 54.7 bits (130), Expect = 8e-08
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Frame = +1
Query: 367 DILERA---IKQAAEQGAQIIVTPE--DALYGWKFTRETIFPYLEDVPDPQKNWIPCQDP 531
D L RA I++AA+QGA+II PE ++ YG K+ E Y E +P
Sbjct: 26 DNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPE----YAEKIPGDSTQ------- 74
Query: 532 HRFGHTPVQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKL 711
+LS +AK +YV+ ++ YNT V+ +G L
Sbjct: 75 ----------KLSEVAKECGVYVIGGSIPEEDAGK-----------LYNTCAVFGPDGTL 113
Query: 712 VARYHKYHLYHELQFDVPEK------------PEVVTFNTPFGKFGIFTCFDILFRDPAV 855
+A+Y K HL+ DVP K TF+TP+ + G+ C+DI F + A
Sbjct: 114 LAKYRKLHLF---DIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDIRFAELAQ 170
Query: 856 TLVQ 867
Q
Sbjct: 171 IYAQ 174
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,697,780
Number of extensions: 716592
Number of successful extensions: 1915
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1900
Number of HSP's successfully gapped: 6
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035834.2| pantetheinase precursor [Mus musculus]. 358 e-102
Alignment gi|NP_036109.3| vascular non-inflammatory molecule 3 precursor ... 357 1e-98
Alignment gi|NP_079571.1| biotinidase [Mus musculus]. 246 2e-65
Alignment gi|NP_075664.1| omega-amidase NIT2 [Mus musculus]. 51 2e-06
>ref|NP_035834.2| pantetheinase precursor [Mus musculus].
Length = 512
Score = 358 bits (918), Expect(2) = e-102
Identities = 173/248 (69%), Positives = 204/248 (82%), Gaps = 1/248 (0%)
Frame = +1
Query: 223 AVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAAE 402
A AL +L +LDTF AAVYEHAVILP DT PVS +AL LMN+N+D+LE AI AA+
Sbjct: 12 AFSALCVLKASSLDTFLAAVYEHAVILPKDTLLPVSHSEALALMNQNLDLLEGAIVSAAK 71
Query: 403 QGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTPVQVRLSCLAK 582
QGA IIVTPED +YG +FTR+TI+PYLE++PDPQ NWIPC +P RFG TPVQ RLSCLAK
Sbjct: 72 QGAHIIVTPEDGIYGVRFTRDTIYPYLEEIPDPQVNWIPCDNPKRFGSTPVQERLSCLAK 131
Query: 583 NNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLY-HELQFD 759
NNSIYV+AN+GDKKPCN+ DS CPP+G +QYNT+VV+DS+GKLVARYHK +++ E QF+
Sbjct: 132 NNSIYVVANMGDKKPCNTSDSHCPPDGRFQYNTDVVFDSQGKLVARYHKQNIFMGEDQFN 191
Query: 760 VPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAIE 939
VP +PE VTF+TPFGKFG+FTCFDILF DPAVTLV +F VDTILFP AWM+VLP L AIE
Sbjct: 192 VPMEPEFVTFDTPFGKFGVFTCFDILFHDPAVTLVTEFQVDTILFPTAWMDVLPHLAAIE 251
Query: 940 SHRLGQWA 963
H WA
Sbjct: 252 FH--SAWA 257
Score = 32.0 bits (71), Expect(2) = e-102
Identities = 18/30 (60%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 945 SAWAMGMRVKSLQPRTSCPP-NMTGSGIYA 1031
SAWAMGM V L P MTGSGIYA
Sbjct: 254 SAWAMGMGVNFLAANLHNPSRRMTGSGIYA 283
>ref|NP_036109.3| vascular non-inflammatory molecule 3 precursor [Mus musculus].
Length = 500
Score = 357 bits (915), Expect = 1e-98
Identities = 171/273 (62%), Positives = 211/273 (77%), Gaps = 2/273 (0%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
M + F F V ++DTF AAVYEHAVILPN T++PVS ++ALLL+NKN+DI
Sbjct: 1 MASLHFPQWAVSFVFFAQAVGSMDTFIAAVYEHAVILPNKTESPVSTEEALLLINKNIDI 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE AIK AA QGA IIVTPED +YGW FTRETI+PYLED+PDP+ NWIPC+DP RFG+TP
Sbjct: 61 LESAIKLAARQGAHIIVTPEDGIYGWIFTRETIYPYLEDIPDPEVNWIPCRDPRRFGYTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLAK NSIY++ANIGDKKPCN+ D CPP+G YQYNTNVV+DS+G+L ARYHKY
Sbjct: 121 VQERLSCLAKENSIYIMANIGDKKPCNATDPHCPPDGRYQYNTNVVFDSKGRLTARYHKY 180
Query: 733 HLYH-ELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWM 909
+L+ E+QFD P+ E+VTF+TPFGKFGIFTCFDI DPAV +V+D VD++L P AW
Sbjct: 181 NLFEPEIQFDFPKDSELVTFDTPFGKFGIFTCFDIFSYDPAVVVVKDTQVDSVLLPTAWY 240
Query: 910 NVLPLLTAIESHRLGQWA*ELN-LCSHVHHVRL 1005
N LPLL+A+ H + A +N L ++ H+ +
Sbjct: 241 NTLPLLSAVPFHSVWARAMGVNVLAANTHNTSM 273
>ref|NP_079571.1| biotinidase [Mus musculus].
Length = 529
Score = 246 bits (629), Expect = 2e-65
Identities = 123/254 (48%), Positives = 171/254 (67%), Gaps = 3/254 (1%)
Frame = +1
Query: 253 RALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAAEQGAQIIVTPE 432
R + + AAVYEH +L + VS +AL LM +N+D+ E+ + AA++G QIIV PE
Sbjct: 39 REAEYYVAAVYEHPSVLSPNPLELVSRQEALELMKQNLDVYEQQVMAAAQKGVQIIVFPE 98
Query: 433 DALYGWKFTRETIFPYLEDVPDPQK-NWIPCQDPHRFGHTPVQVRLSCLAKNNSIYVLAN 609
D ++G+ FTR +I+P+L+ +P P+ W PC +P RF T V RLSC+A ++++AN
Sbjct: 99 DGIHGFNFTRTSIYPFLDFMPSPKLVRWNPCLEPFRFNDTEVLQRLSCMAIKGGMFLVAN 158
Query: 610 IGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLYHELQFDVPEKPEVVTF 789
+G K+PC S D CP +G YQ+NTNVV+ G LV RY K++LY E FD P +++TF
Sbjct: 159 LGTKQPCLSSDPGCPQDGRYQFNTNVVFSDNGTLVDRYRKHNLYFEAAFDTPANVDLITF 218
Query: 790 NTPF-GKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAIESHRLGQWA* 966
+TPF GKFG+FTCFDILF DPAV L++DF V I++P AWMN LPLL AIE + A
Sbjct: 219 DTPFAGKFGVFTCFDILFFDPAVRLLRDFEVKHIVYPTAWMNQLPLLAAIEIQKAFATAF 278
Query: 967 ELN-LCSHVHHVRL 1005
+N L +++HH L
Sbjct: 279 GVNVLAANIHHPTL 292
>ref|NP_075664.1| omega-amidase NIT2 [Mus musculus].
Length = 276
Score = 50.8 bits (120), Expect = 2e-06
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 18/185 (9%)
Frame = +1
Query: 367 DILERA---IKQAAEQGAQIIVTPE--DALYGWKFTRETIFP-YLEDVPDPQKNWIPCQD 528
D L RA +++AA+QGA I+ PE ++ YG T FP Y E +P
Sbjct: 19 DNLTRACSLVREAAKQGANIVSLPECFNSPYG-----TTYFPDYAEKIPGESTQ------ 67
Query: 529 PHRFGHTPVQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGK 708
+LS +AK +SIY++ ++ YNT V+ +G
Sbjct: 68 -----------KLSEVAKESSIYLIGGSIPEEDAGK-----------LYNTCSVFGPDGS 105
Query: 709 LVARYHKYHLYHELQFDVPEK------------PEVVTFNTPFGKFGIFTCFDILFRDPA 852
L+ ++ K HL+ DVP K TF+TP+ K G+ C+D+ F + A
Sbjct: 106 LLVKHRKIHLF---DIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELA 162
Query: 853 VTLVQ 867
Q
Sbjct: 163 QIYAQ 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,488,442
Number of extensions: 980850
Number of successful extensions: 2860
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2821
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004656.2| vascular non-inflammatory molecule 2 isoform 1 ... 441 e-124
Alignment gi|NP_511043.1| vascular non-inflammatory molecule 2 isoform 2 ... 379 e-105
Alignment gi|NP_004657.2| pantetheinase precursor [Homo sapiens]. 364 e-101
Alignment gi|NP_001229279.1| vascular non-inflammatory molecule 2 isoform... 310 1e-84
Alignment gi|NP_000051.1| biotinidase precursor [Homo sapiens]. 252 4e-67
Alignment gi|NP_064587.1| omega-amidase NIT2 [Homo sapiens]. 53 5e-07
>ref|NP_004656.2| vascular non-inflammatory molecule 2 isoform 1 precursor [Homo
sapiens].
Length = 520
Score = 441 bits (1134), Expect = e-124
Identities = 213/274 (77%), Positives = 236/274 (86%), Gaps = 3/274 (1%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
M+ SSF ++AVFALI L V D+F AAVYEHAVILPN T+TPVS +DAL LMN+N+DI
Sbjct: 1 MVTSSFPISVAVFALITLQVGTQDSFIAAVYEHAVILPNKTETPVSQEDALNLMNENIDI 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE AIKQAAEQGA+IIVTPEDALYGWKFTRET+FPYLED+PDPQ NWIPCQDPHRFGHTP
Sbjct: 61 LETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDPHRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKY 732
VQ RLSCLAK+NSIYVLAN+GDKKPCNS DS CPPNGY+QYNTNVVY++EGKLVARYHKY
Sbjct: 121 VQARLSCLAKDNSIYVLANLGDKKPCNSRDSTCPPNGYFQYNTNVVYNTEGKLVARYHKY 180
Query: 733 HLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMN 912
HLY E QF+VPEKPE+VTFNT FG+FGIFTCFDI F DP VTLV+DFHVDTILFP AWMN
Sbjct: 181 HLYSEPQFNVPEKPELVTFNTAFGRFGIFTCFDIFFYDPGVTLVKDFHVDTILFPTAWMN 240
Query: 913 VLPLLTAIESHRLGQWA*ELN---LCSHVHHVRL 1005
VLPLLTAIE H WA + L ++ HHV L
Sbjct: 241 VLPLLTAIEFH--SAWAMGMGVNLLVANTHHVSL 272
>ref|NP_511043.1| vascular non-inflammatory molecule 2 isoform 2 [Homo sapiens].
Length = 467
Score = 379 bits (972), Expect = e-105
Identities = 178/221 (80%), Positives = 195/221 (88%), Gaps = 3/221 (1%)
Frame = +1
Query: 352 MNKNMDILERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDP 531
MN+N+DILE AIKQAAEQGA+IIVTPEDALYGWKFTRET+FPYLED+PDPQ NWIPCQDP
Sbjct: 1 MNENIDILETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDP 60
Query: 532 HRFGHTPVQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKL 711
HRFGHTPVQ RLSCLAK+NSIYVLAN+GDKKPCNS DS CPPNGY+QYNTNVVY++EGKL
Sbjct: 61 HRFGHTPVQARLSCLAKDNSIYVLANLGDKKPCNSRDSTCPPNGYFQYNTNVVYNTEGKL 120
Query: 712 VARYHKYHLYHELQFDVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTIL 891
VARYHKYHLY E QF+VPEKPE+VTFNT FG+FGIFTCFDI F DP VTLV+DFHVDTIL
Sbjct: 121 VARYHKYHLYSEPQFNVPEKPELVTFNTAFGRFGIFTCFDIFFYDPGVTLVKDFHVDTIL 180
Query: 892 FPAAWMNVLPLLTAIESHRLGQWA*ELN---LCSHVHHVRL 1005
FP AWMNVLPLLTAIE H WA + L ++ HHV L
Sbjct: 181 FPTAWMNVLPLLTAIEFH--SAWAMGMGVNLLVANTHHVSL 219
>ref|NP_004657.2| pantetheinase precursor [Homo sapiens].
Length = 513
Score = 364 bits (935), Expect = e-101
Identities = 172/261 (65%), Positives = 211/261 (80%), Gaps = 2/261 (0%)
Frame = +1
Query: 220 LAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAA 399
+A+ + DTF AAVYEHA ILPN T TPVS ++AL LMN+N+DILE AI AA
Sbjct: 9 VAILLFYVSRASCQDTFTAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAA 68
Query: 400 EQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTPVQVRLSCLA 579
+QGA IIVTPEDA+YGW F R++++PYLED+PDP+ NWIPC + +RFG TPVQ RLSCLA
Sbjct: 69 DQGAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRNRFGQTPVQERLSCLA 128
Query: 580 KNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLY-HELQF 756
KNNSIYV+ANIGDKKPC++ D +CPP+G YQYNT+VV+DS+GKLVARYHK +L+ E QF
Sbjct: 129 KNNSIYVVANIGDKKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHKQNLFMGENQF 188
Query: 757 DVPEKPEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAI 936
+VP++PE+VTFNT FG FGIFTCFDILF DPAVTLV+DFHVDTI+FP AWMNVLP L+A+
Sbjct: 189 NVPKEPEIVTFNTTFGSFGIFTCFDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAV 248
Query: 937 ESHRLGQWA*ELN-LCSHVHH 996
E H +N L S++H+
Sbjct: 249 EFHSAWAMGMRVNFLASNIHY 269
>ref|NP_001229279.1| vascular non-inflammatory molecule 2 isoform 3 precursor [Homo
sapiens].
Length = 299
Score = 310 bits (795), Expect = 1e-84
Identities = 146/179 (81%), Positives = 162/179 (90%)
Frame = +1
Query: 193 MIASSFQTTLAVFALIILHVRALDTFKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDI 372
M+ SSF ++AVFALI L V D+F AAVYEHAVILPN T+TPVS +DAL LMN+N+DI
Sbjct: 1 MVTSSFPISVAVFALITLQVGTQDSFIAAVYEHAVILPNKTETPVSQEDALNLMNENIDI 60
Query: 373 LERAIKQAAEQGAQIIVTPEDALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTP 552
LE AIKQAAEQGA+IIVTPEDALYGWKFTRET+FPYLED+PDPQ NWIPCQDPHRFGHTP
Sbjct: 61 LETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDPHRFGHTP 120
Query: 553 VQVRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHK 729
VQ RLSCLAK+NSIYVLAN+GDKKPCNS DS CPPNGY+QYNTNVVY++EGKLVARYHK
Sbjct: 121 VQARLSCLAKDNSIYVLANLGDKKPCNSRDSTCPPNGYFQYNTNVVYNTEGKLVARYHK 179
>ref|NP_000051.1| biotinidase precursor [Homo sapiens].
Length = 543
Score = 252 bits (644), Expect = 4e-67
Identities = 123/246 (50%), Positives = 174/246 (70%), Gaps = 3/246 (1%)
Frame = +1
Query: 268 FKAAVYEHAVILPNDTKTPVSWDDALLLMNKNMDILERAIKQAAEQGAQIIVTPEDALYG 447
+ AAVYEH IL + +S +AL LMN+N+DI E+ + AA++ QIIV PED ++G
Sbjct: 58 YVAAVYEHPSILSLNPLALISRQEALELMNQNLDIYEQQVMTAAQKDVQIIVFPEDGIHG 117
Query: 448 WKFTRETIFPYLEDVPDPQK-NWIPCQDPHRFGHTPVQVRLSCLAKNNSIYVLANIGDKK 624
+ FTR +I+P+L+ +P PQ W PC +PHRF T V RLSC+A ++++AN+G K+
Sbjct: 118 FNFTRTSIYPFLDFMPSPQVVRWNPCLEPHRFNDTEVLQRLSCMAIRGDMFLVANLGTKE 177
Query: 625 PCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHLYHELQFDVPEKPEVVTFNTPF- 801
PC+S D +CP +G YQ+NTNVV+ + G LV RY K++LY E FDVP K +++TF+TPF
Sbjct: 178 PCHSSDPRCPKDGRYQFNTNVVFSNNGTLVDRYRKHNLYFEAAFDVPLKVDLITFDTPFA 237
Query: 802 GKFGIFTCFDILFRDPAVTLVQDFHVDTILFPAAWMNVLPLLTAIESHRLGQWA*ELN-L 978
G+FGIFTCFDILF DPA+ +++D+ V +++P AWMN LPLL AIE + A +N L
Sbjct: 238 GRFGIFTCFDILFFDPAIRVLRDYKVKHVVYPTAWMNQLPLLAAIEIQKAFAVAFGINVL 297
Query: 979 CSHVHH 996
++VHH
Sbjct: 298 AANVHH 303
>ref|NP_064587.1| omega-amidase NIT2 [Homo sapiens].
Length = 276
Score = 52.8 bits (125), Expect = 5e-07
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Frame = +1
Query: 385 IKQAAEQGAQIIVTPE--DALYGWKFTRETIFPYLEDVPDPQKNWIPCQDPHRFGHTPVQ 558
I++AA QGA+I+ PE ++ YG K+ E Y E +P
Sbjct: 28 IREAATQGAKIVSLPECFNSPYGAKYFPE----YAEKIPGESTQ---------------- 67
Query: 559 VRLSCLAKNNSIYVLANIGDKKPCNSHDSKCPPNGYYQYNTNVVYDSEGKLVARYHKYHL 738
+LS +AK SIY++ ++ YNT V+ +G L+A+Y K HL
Sbjct: 68 -KLSEVAKECSIYLIGGSIPEEDAGK-----------LYNTCAVFGPDGTLLAKYRKIHL 115
Query: 739 YHELQFDVPEK------------PEVVTFNTPFGKFGIFTCFDILFRDPAVTLVQ 867
+ DVP K TF+TP+ + G+ C+D+ F + A Q
Sbjct: 116 F---DIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQ 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,697,169
Number of extensions: 1150571
Number of successful extensions: 3150
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3119
Number of HSP's successfully gapped: 6
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014500
(1045 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 476 e-131
>Sscrofa_Chr01
|| Length = 315321322
Score = 476 bits (240), Expect = e-131
Identities = 283/292 (96%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 728 agtaccacctctaccatgagcttcagtttgatgtccctgaaaagccggaggtggtgactt 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34485305 agtaccacctctaccatgagcttcagtttgatgtccctgaaaagccggaggtggtgactt 34485364
Query: 788 tcaacaccccttttggaaagttcggcattttcacgtgcttcgatattctcttccgtgatc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34485365 tcaacaccccttttggaaagttcggcattttcacgtgcttcgatattctcttccgtgatc 34485424
Query: 848 ctgctgtgacgctggtgcaagatttccacgtggacaccatattgtttccggcagcttgga 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34485425 ctgctgtgacgctggtgcaagatttccacgtggacaccatattgtttccggcagcttgga 34485484
Query: 908 tgaatgtgttgccccttttgacagctattgaatccca-tcggcttgggcaatgggcatga 966
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 34485485 tgaatgtgttgccccttttgacagctattgaattccattcggcttgggcaatgggcatga 34485544
Query: 967 gagttaaatctc-tgcagcc-acgtacatcatgtccgcct-aatatgacagg 1015
||||||| || ||||||| || |||||||||||||||| |||||||||||
Sbjct: 34485545 gagttaatcttcttgcagccaacatacatcatgtccgcctaaatatgacagg 34485596
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 173 agaactcactagacttggccatgatcgcttcctcttttcaaactacgttagcagtttttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482407 agaactcactagacttggccatgatcgcttcctcttttcaaactacgttagcagtttttg 34482466
Query: 233 ccctaattatcctgcatgtccgtgcactggatacttttaaggctgctgtatatgaacatg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482467 ccctaattatcctgcatgtccgtgcactggatacttttaaggctgctgtatatgaacatg 34482526
Query: 293 ctgtcatcctgccaaatgacacaaaaacacctgtttcttgggatgatgctttgctcctca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482527 ctgtcatcctgccaaatgacacaaaaacacctgtttcttgggatgatgctttgctcctca 34482586
Query: 353 tgaacaagaatatggatattctggagagagcaattaagcaggcagctgagcagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482587 tgaacaagaatatggatattctggagagagcaattaagcaggcagctgagcagg 34482640
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 535 agatttggtcacacaccagtgcaagtaagactcagctgcctggccaagaataactctatc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34483422 agatttggtcacacaccagtgcaagtaagactcagctgcctggccaagaataactctatc 34483481
Query: 595 tatgtcttggcgaatattggagacaaaaagccctgtaattcccatgattccaaatgtcct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34483482 tatgtcttggcgaatattggagacaaaaagccctgtaattcccatgattccaaatgtcct 34483541
Query: 655 cctaatggctattatcaatacaacaccaacgtggtatatgattcagagggaaagctggtg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34483542 cctaatggctattatcaatacaacaccaacgtggtatatgattcagagggaaagctggtg 34483601
Query: 715 gcacgttaccataag 729
|||||||||||||||
Sbjct: 34483602 gcacgttaccataag 34483616
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 agttccccgaggcctgggatcccctaggcagaggttctcgatgtcttctccggccaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34481618 agttccccgaggcctgggatcccctaggcagaggttctcgatgtcttctccggccaaaca 34481677
Query: 61 ccaggaacagcagctgaaggatacgtgttttgggcactaaggatgcagcaatgagcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34481678 ccaggaacagcagctgaaggatacgtgttttgggcactaaggatgcagcaatgagcaaaa 34481737
Query: 121 ccagacacaacatctcttctttttaacgaagtgcatgttcatcatctttcatag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34481738 ccagacacaacatctcttctttttaacgaagtgcatgttcatcatctttcatag 34481791
Score = 250 bits (126), Expect = 1e-63
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 403 cagggtgctcaaatcattgtgactccagaagatgcactttatggatggaaatttaccagg 462
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482757 cagggttctcaaatcattgtgactccagaagatgcactttatggatggaaatttaccagg 34482816
Query: 463 gaaaccatttttccctatctggaggatgtcccagatcctcagaagaactggattccatgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34482817 gaaaccatttttccctatctggaggatgtcccagatcctcagaagaactggattccatgt 34482876
Query: 523 caagaccccc 532
||||||||||
Sbjct: 34482877 caagaccccc 34482886
Score = 180 bits (91), Expect = 1e-42
Identities = 167/191 (87%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 781 gtgactttcaacaccccttttggaaagttcggcattttcacgtgcttcgatattctcttc 840
||||||||| | ||| | ||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 34536145 gtgactttcgataccacctttggaagatttggcattttcacgtgctttgatattctcttc 34536204
Query: 841 cgtgatcctgctgtgacgctggtgcaagatttccacgtggacaccatattgtttccggca 900
| |||||| |||||||| |||||| |||||||||| |||||||||||| | || ||| ||
Sbjct: 34536205 catgatcccgctgtgactctggtgaaagatttccaggtggacaccatactcttcccgaca 34536264
Query: 901 gcttggatgaatgtgttgccccttttgacagctattgaatccca-tcggcttgggcaatg 959
|||||||||||||| ||||| | ||||||||||||||||| ||| || |||||||| |||
Sbjct: 34536265 gcttggatgaatgttttgccacatttgacagctattgaattccactcagcttgggctatg 34536324
Query: 960 ggcatgagagt 970
|||||||||||
Sbjct: 34536325 ggcatgagagt 34536335
Score = 85.7 bits (43), Expect = 4e-14
Identities = 112/135 (82%)
Strand = Plus / Plus
Query: 399 tgagcagggtgctcaaatcattgtgactccagaagatgcactttatggatggaaatttac 458
||||||||| || || ||||||||||| |||||||||| | ||||||| ||| || ||
Sbjct: 34501703 tgagcagggcgcacatatcattgtgaccccagaagatggaatttatggctgggtcttcac 34501762
Query: 459 cagggaaaccatttttccctatctggaggatgtcccagatcctcagaagaactggattcc 518
|||||| ||||||| |||||| ||||||||| ||||||| ||| ||||||||||||
Sbjct: 34501763 cagggagaccatttatccctacctggaggatatcccagaccctggagtgaactggattcc 34501822
Query: 519 atgtcaagaccccca 533
|||| |||| |||||
Sbjct: 34501823 atgtaaagatcccca 34501837
Score = 77.8 bits (39), Expect = 1e-11
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 550 ccagtgcaagtaagactcagctgcctggccaagaataactctatctatgtcttggcgaat 609
|||||||||| ||| |||||||||||||||||| | |||||||||||||| |||| |||
Sbjct: 34506744 ccagtgcaagaaaggctcagctgcctggccaagcacaactctatctatgttgtggcaaat 34506803
Query: 610 attggagacaa 620
||||| |||||
Sbjct: 34506804 attggggacaa 34506814
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,969,739
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 8
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)