Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776895.1| thiamine-triphosphatase [Bos taurus]. 302 4e-82
>ref|NP_776895.1| thiamine-triphosphatase [Bos taurus].
Length = 219
Score = 302 bits (774), Expect = 4e-82
Identities = 159/219 (72%), Positives = 172/219 (78%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA GLIEVERKF+PGP EERLQELGG LEHR+TFRDSYYDTPELSLMR+D+WLRQREGS
Sbjct: 1 MAQGLIEVERKFVPGPSTEERLQELGGTLEHRVTFRDSYYDTPELSLMRADYWLRQREGS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GW+LK GAA VS P T+YTELTA+ +IVAQLCEVL AEVP AGGVAAVL LGLQ +AS
Sbjct: 61 GWELKCPGAAGVSGPHTEYTELTAEPSIVAQLCEVLGAEVPGAGGVAAVLGPLGLQLVAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
FVT+RS WKLV SGAD EE LRVDLDTADFGY KIH +SS
Sbjct: 121 FVTKRSAWKLVLSGADGEERLLRVDLDTADFGYAVGEVEALVHKEAEVPAALEKIHHLSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKP 905
+LGVL + APAKLIVYLQ FRPQDYQRLLEVY SK KP
Sbjct: 181 LLGVLEQGRAPAKLIVYLQRFRPQDYQRLLEVYGSKEKP 219
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,711,539
Number of extensions: 1622823
Number of successful extensions: 7713
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7685
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,207,134
Effective search space: 4404211540
Effective search space used: 4404211540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014505
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547736.2| PREDICTED: similar to thiamine triphosphatase i... 296 2e-80
Alignment gi|XP_859333.1| PREDICTED: similar to thiamine triphosphatase i... 123 4e-28
>ref|XP_547736.2| PREDICTED: similar to thiamine triphosphatase isoform 1 [Canis
familiaris].
Length = 230
Score = 296 bits (759), Expect = 2e-80
Identities = 156/230 (67%), Positives = 173/230 (75%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA LIEVERKF+PGP E+RLQELG LEHR+TFRDSYYDTPELSLMR+D+WLRQREGS
Sbjct: 1 MAQALIEVERKFVPGPDTEDRLQELGATLEHRVTFRDSYYDTPELSLMRADYWLRQREGS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GW+LK G VS P T+Y EL +S IVAQLCEVL EV AGGVAAVL L LQE+AS
Sbjct: 61 GWELKCPGRPGVSGPHTEYVELIVESDIVAQLCEVLGTEVLGAGGVAAVLGPLKLQEVAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
FVT+R WKLV SGA+EEEPPLRVDLDTADFGY KIHS+SS
Sbjct: 121 FVTKRGAWKLVLSGAEEEEPPLRVDLDTADFGYTVGEIEALVHEEAEIPAALEKIHSLSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG 938
MLGV V+E+APAKLIVYLQ FRPQDYQ LLEV S +KP+GT+ D LG
Sbjct: 181 MLGVPVQEKAPAKLIVYLQRFRPQDYQHLLEVLSPSKKPQGTKAPDSSLG 230
>ref|XP_859333.1| PREDICTED: similar to thiamine triphosphatase isoform 2 [Canis
familiaris].
Length = 117
Score = 123 bits (308), Expect = 4e-28
Identities = 58/78 (74%), Positives = 65/78 (83%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA LIEVERKF+PGP E+RLQELG LEHR+TFRDSYYDTPELSLMR+D+WLRQREGS
Sbjct: 1 MAQALIEVERKFVPGPDTEDRLQELGATLEHRVTFRDSYYDTPELSLMRADYWLRQREGS 60
Query: 429 GWQLKYAGAASVSEPCTK 482
GW+LK G VS P T+
Sbjct: 61 GWELKCPGRPGVSGPHTE 78
Score = 55.8 bits (133), Expect = 8e-08
Identities = 29/52 (55%), Positives = 32/52 (61%)
Frame = +2
Query: 758 CPRKDPQRQQHAWCAGA*GGTCQANRVPTVLPASRLSAPARSVQLQKEARGD 913
CP + H CA TCQA+ VPT LPAS LSAPARS Q Q+EA GD
Sbjct: 66 CPGRPGVSGPHTECASTGESTCQADCVPTALPASGLSAPARSTQPQQEATGD 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,857,071
Number of extensions: 1666473
Number of successful extensions: 8136
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8079
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 310
Effective length of database: 15,374,224
Effective search space: 4766009440
Effective search space used: 4766009440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928758.1| PREDICTED: thiamine-triphosphatase [Sus scro... 412 e-115
>ref|XP_001928758.1| PREDICTED: thiamine-triphosphatase [Sus scrofa].
Length = 230
Score = 412 bits (1058), Expect = e-115
Identities = 210/230 (91%), Positives = 210/230 (91%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS
Sbjct: 1 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS
Sbjct: 61 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGY KIHSVSS
Sbjct: 121 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYAVGEVEALVREEAEVPAALEKIHSVSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG 938
MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG
Sbjct: 181 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,080,278
Number of extensions: 1053187
Number of successful extensions: 5145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5121
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 314
Effective length of database: 8,829,335
Effective search space: 2772411190
Effective search space used: 2772411190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694723.1| thiamine-triphosphatase [Mus musculus]. 252 4e-67
>ref|NP_694723.1| thiamine-triphosphatase [Mus musculus].
Length = 224
Score = 252 bits (644), Expect = 4e-67
Identities = 134/215 (62%), Positives = 153/215 (71%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA GLIEVERKF PGP EERLQELG LEHR+TFRD+YYDT ELSLM SDHWLRQREGS
Sbjct: 1 MAQGLIEVERKFAPGPDTEERLQELGATLEHRVTFRDTYYDTSELSLMLSDHWLRQREGS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GW+LK G VS P +Y E+T+++AIVAQL E+L + + GVAAVL L LQE+AS
Sbjct: 61 GWELKCPGVTGVSGPHNEYVEVTSEAAIVAQLFELLGSGEQKPAGVAAVLGSLKLQEVAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
F+T RS WKL SGA +EP L +DLD+ADFGY KI +VSS
Sbjct: 121 FITTRSSWKLALSGAHGQEPQLTIDLDSADFGYAVGEVEAMVHEKAEVPAALEKIITVSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSS 893
MLGV +EEAPAKL+VYLQ FRP DYQRLLE SS
Sbjct: 181 MLGVPAQEEAPAKLMVYLQRFRPLDYQRLLEAASS 215
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,087,294
Number of extensions: 1332177
Number of successful extensions: 5763
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5720
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 311
Effective length of database: 12,493,815
Effective search space: 3885576465
Effective search space used: 3885576465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001119811.1| thiamine-triphosphatase [Homo sapiens]. 298 5e-81
Alignment gi|NP_077304.1| thiamine-triphosphatase [Homo sapiens]. 298 5e-81
>ref|NP_001119811.1| thiamine-triphosphatase [Homo sapiens].
Length = 230
Score = 298 bits (764), Expect = 5e-81
Identities = 158/230 (68%), Positives = 176/230 (76%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA GLIEVERKFLPGPG EERLQELGG LE+R+TFRD+YYDTPELSLM++DHWLR+RE S
Sbjct: 1 MAQGLIEVERKFLPGPGTEERLQELGGTLEYRVTFRDTYYDTPELSLMQADHWLRRREDS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GW+LK GAA V P T+Y ELTA+ IVAQLC+VLRA+ AG VAAVL LGLQE+AS
Sbjct: 61 GWELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRADGLGAGDVAAVLGPLGLQEVAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
FVT+RS WKLV GADEEEP LRVDLDTADFGY KIH +SS
Sbjct: 121 FVTKRSAWKLVLLGADEEEPQLRVDLDTADFGYAVGEVEALVHEEAEVPTALEKIHRLSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG 938
MLGV +E APAKLIVYLQ FRPQDYQRLLEV SS+ +P+ TED D LG
Sbjct: 181 MLGVPAQETAPAKLIVYLQRFRPQDYQRLLEVNSSRERPQETEDPDHCLG 230
>ref|NP_077304.1| thiamine-triphosphatase [Homo sapiens].
Length = 230
Score = 298 bits (764), Expect = 5e-81
Identities = 158/230 (68%), Positives = 176/230 (76%)
Frame = +3
Query: 249 MALGLIEVERKFLPGPGIEERLQELGGILEHRITFRDSYYDTPELSLMRSDHWLRQREGS 428
MA GLIEVERKFLPGPG EERLQELGG LE+R+TFRD+YYDTPELSLM++DHWLR+RE S
Sbjct: 1 MAQGLIEVERKFLPGPGTEERLQELGGTLEYRVTFRDTYYDTPELSLMQADHWLRRREDS 60
Query: 429 GWQLKYAGAASVSEPCTKYTELTAKSAIVAQLCEVLRAEVPRAGGVAAVLDRLGLQEIAS 608
GW+LK GAA V P T+Y ELTA+ IVAQLC+VLRA+ AG VAAVL LGLQE+AS
Sbjct: 61 GWELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRADGLGAGDVAAVLGPLGLQEVAS 120
Query: 609 FVTQRSGWKLVPSGADEEEPPLRVDLDTADFGYXXXXXXXXXXXXXXXXXXXXKIHSVSS 788
FVT+RS WKLV GADEEEP LRVDLDTADFGY KIH +SS
Sbjct: 121 FVTKRSAWKLVLLGADEEEPQLRVDLDTADFGYAVGEVEALVHEEAEVPTALEKIHRLSS 180
Query: 789 MLGVLVREEAPAKLIVYLQCFRPQDYQRLLEVYSSKRKPEGTEDLDVRLG 938
MLGV +E APAKLIVYLQ FRPQDYQRLLEV SS+ +P+ TED D LG
Sbjct: 181 MLGVPAQETAPAKLIVYLQRFRPQDYQRLLEVNSSRERPQETEDPDHCLG 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,666,951
Number of extensions: 1618715
Number of successful extensions: 7585
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7548
Number of HSP's successfully gapped: 2
Length of query: 415
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 310
Effective length of database: 14,835,944
Effective search space: 4599142640
Effective search space used: 4599142640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014505
(1247 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1106 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1106 bits (558), Expect = 0.0
Identities = 558/558 (100%)
Strand = Plus / Minus
Query: 241 caggtaacatggccttgggcctgattgaagtggaacgaaagttccttcccgggcccggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866412 caggtaacatggccttgggcctgattgaagtggaacgaaagttccttcccgggcccggca 80866353
Query: 301 tagaggagcggctgcaggagttgggaggtatcctggagcaccgaatcaccttccgagaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866352 tagaggagcggctgcaggagttgggaggtatcctggagcaccgaatcaccttccgagaca 80866293
Query: 361 gctactatgatacccctgagctgagcctcatgcggtctgaccactggctgcgacagcgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866292 gctactatgatacccctgagctgagcctcatgcggtctgaccactggctgcgacagcgag 80866233
Query: 421 agggtagtggatggcagctcaaatatgctggggcagcaagtgtctcagaaccctgcacta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866232 agggtagtggatggcagctcaaatatgctggggcagcaagtgtctcagaaccctgcacta 80866173
Query: 481 agtacacggagctcacagctaagtctgcaattgtggcccagctctgtgaggtgctgaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866172 agtacacggagctcacagctaagtctgcaattgtggcccagctctgtgaggtgctgaggg 80866113
Query: 541 ctgaggtccccagggctgggggtgtggctgctgtgctggaccgtctggggctgcaggaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866112 ctgaggtccccagggctgggggtgtggctgctgtgctggaccgtctggggctgcaggaaa 80866053
Query: 601 tagcaagttttgtgacccagcgcagtggctggaaactggtgccgtctggagctgatgaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866052 tagcaagttttgtgacccagcgcagtggctggaaactggtgccgtctggagctgatgaag 80865993
Query: 661 aggagccacccctcagagtggacctggatacagctgactttggctacgctgtgggtgagg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80865992 aggagccacccctcagagtggacctggatacagctgactttggctacgctgtgggtgagg 80865933
Query: 721 tagaggccctggtgcgtgaggaggctgaagtcccagctgccctagaaaagatccacagcg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80865932 tagaggccctggtgcgtgaggaggctgaagtcccagctgccctagaaaagatccacagcg 80865873
Query: 781 tcagcagcatgcttggtg 798
||||||||||||||||||
Sbjct: 80865872 tcagcagcatgcttggtg 80865855
Score = 749 bits (378), Expect = 0.0
Identities = 437/454 (96%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 795 ggtgtgctggtgcgtgaggaggcacctgccaagctaatcgtgtacctacagtgcttccgg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80864579 ggtgtgctggtgcgtgaggaggcacctgccaagctaatcgtgtacctacagtgcttccgg 80864520
Query: 855 cctcaagactatcagcgcctgctagaagtgtacagctccaaaaggaagccagaggggact 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80864519 cctcaagactatcagcgcctgctagaagtgtacagctccaaaaggaagccagaggggact 80864460
Query: 915 gaagatctggacgtgagactgggctagggtgtcccctcctctgtggggaagagcatcctg 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80864459 gaagatctggacgtgagactgggctagggtgtcccctcctctgtggggaagagcatcctg 80864400
Query: 975 ggtctcctgagattcattcttggccttgccgtgcctcttcctccctggcctccctttgga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80864399 ggtctcctgagattcattcttggccttgccgtgcctcttcctccctggcctccctttgga 80864340
Query: 1035 gggagtgaccctctcggttctgcctgttccttcaccctaccctcagccatccttcctgga 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80864339 gggagtgaccctctcggttctgcctgttccttcaccctaccctcagccatccttcctgga 80864280
Query: 1095 gccctccttgnngtgcgtctcnntcctcat-cgtcagatgcaatctgcggggcgcccctc 1153
|||||||||| |||||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 80864279 gccctccttggt-tgcgtcctctccctcatccgtcagatgcaatctgcgggccgcccctc 80864221
Query: 1154 tccccctggcgctaagcagcctccattgatttccgctcgtggttataggatttccacttt 1213
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 80864220 tcccctggccgctaagcagcctccattgatttccgctcgtgtttataggatttccac-tt 80864162
Query: 1214 agccgggatcagtaggtaagcacaggaaaatccc 1247
||||| ||||||||| ||||||||||||||||||
Sbjct: 80864161 agccgtgatcagtagttaagcacaggaaaatccc 80864128
Score = 478 bits (241), Expect = e-132
Identities = 244/245 (99%)
Strand = Plus / Minus
Query: 1 cgctccttgctcaccgcggaggttgcggcccctcgtaacctagcgggtatctcgggccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80867029 cgctccttgctcaccgcggaggttgcggcccctcgtaacctagcgggtatctcgggccct 80866970
Query: 61 ggcctgccttcggcaccgccacatcgggcctaacatggccgcttataccgggacctcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866969 ggcctgccttcggcaccgccacatcgggcctaacatggccgcttataccgggacctcccc 80866910
Query: 121 cgtgtgcagagcgccggccgaggtcctgggccaggatctgctcccggcattcctcgcgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80866909 cgtgtgcagagcgccggccgaggtcctgggccaggatctgctcccggcattcctcgcgtg 80866850
Query: 181 cgtggcgtggcctcccttctctcttctccaggtcccgcgagagggagaccctggcgcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 80866849 cgtggcgtggcctcccttctctcttctccaggtcccgcgagagggagactctggcgcgtt 80866790
Query: 241 caggt 245
|||||
Sbjct: 80866789 caggt 80866785
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,789,789
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 4
Length of query: 1247
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1226
Effective length of database: 2,808,413,156
Effective search space: 3443114529256
Effective search space used: 3443114529256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)