Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015643.1| TBC1 domain family member 7 [Bos taurus]. 565 e-161
>ref|NP_001015643.1| TBC1 domain family member 7 [Bos taurus].
Length = 293
Score = 565 bits (1457), Expect = e-161
Identities = 277/293 (94%), Positives = 284/293 (96%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESH +VM YRKEQYSDVLHAL VIRFVSDATPQ EV LYMHRLESGKLP
Sbjct: 61 KVLLGILPPHHESHVQVMTYRKEQYSDVLHALKVIRFVSDATPQSEVCLYMHRLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQL+SKYRD LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLNSKYRDTLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLKAC AVS LPY+LWFK+CFAGCLPE SLQR+WDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDSRLLSHLKACCAVSTLPYELWFKKCFAGCLPESSLQRIWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,067,123
Number of extensions: 1217161
Number of successful extensions: 4073
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014518
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535890.1| PREDICTED: similar to TBC1 domain family, membe... 558 e-159
Alignment gi|XP_857959.1| PREDICTED: similar to TBC1 domain family, membe... 540 e-154
Alignment gi|XP_858003.1| PREDICTED: similar to TBC1 domain family, membe... 489 e-138
>ref|XP_535890.1| PREDICTED: similar to TBC1 domain family, member 7 isoform 1 [Canis
familiaris].
Length = 293
Score = 558 bits (1438), Expect = e-159
Identities = 272/293 (92%), Positives = 285/293 (97%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQVEV+L M++LESGKLP
Sbjct: 61 KVLLGILPPHHESHAQVMMYRKEQYCDVLHALHVVRFVSDATPQVEVYLRMYQLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKA+EEMVEDSVDCYWI RCFVNQL++KYR+ LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPEDEVFLAIAKAVEEMVEDSVDCYWIIRCFVNQLNNKYRESLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLK CSA+SRLPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDSRLLSHLKTCSALSRLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALN+AEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 241 EILLTFKIKVMALNNAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 293
>ref|XP_857959.1| PREDICTED: similar to TBC1 domain family, member 7 isoform 2 [Canis
familiaris].
Length = 294
Score = 540 bits (1392), Expect = e-154
Identities = 266/294 (90%), Positives = 282/294 (95%), Gaps = 1/294 (0%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQVEV+L M++LESGKLP
Sbjct: 61 KVLLGILPPHHESHAQVMMYRKEQYCDVLHALHVVRFVSDATPQVEVYLRMYQLESGKLP 120
Query: 560 R-SPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQ 736
R + + L+PEDEVFLAIAKA+EEMVEDSVDCYWI RCFVNQL++KYR+ LPQLPKAFEQ
Sbjct: 121 RKTKNRALDPEDEVFLAIAKAVEEMVEDSVDCYWIIRCFVNQLNNKYRESLPQLPKAFEQ 180
Query: 737 YLNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVA 916
YLNLEDSRLLSHLK CSA+SRLPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVA
Sbjct: 181 YLNLEDSRLLSHLKTCSALSRLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVA 240
Query: 917 VEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
VEILLTFKIKVMALN+AEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 241 VEILLTFKIKVMALNNAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 294
>ref|XP_858003.1| PREDICTED: similar to TBC1 domain family, member 7 isoform 3 [Canis
familiaris].
Length = 266
Score = 489 bits (1260), Expect = e-138
Identities = 246/293 (83%), Positives = 258/293 (88%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL----------------------- 37
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
GILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQVEV+L M++LESGKLP
Sbjct: 38 ----GILPPHHESHAQVMMYRKEQYCDVLHALHVVRFVSDATPQVEVYLRMYQLESGKLP 93
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKA+EEMVEDSVDCYWI RCFVNQL++KYR+ LPQLPKAFEQY
Sbjct: 94 RSPSFPLEPEDEVFLAIAKAVEEMVEDSVDCYWIIRCFVNQLNNKYRESLPQLPKAFEQY 153
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLK CSA+SRLPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 154 LNLEDSRLLSHLKTCSALSRLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 213
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALN+AEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 214 EILLTFKIKVMALNNAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,888,222
Number of extensions: 1235454
Number of successful extensions: 4161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4156
Number of HSP's successfully gapped: 3
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928344.1| PREDICTED: TBC1 domain family member 7 isofo... 596 e-171
Alignment gi|XP_003128230.1| PREDICTED: TBC1 domain family member 7 isofo... 526 e-150
>ref|XP_001928344.1| PREDICTED: TBC1 domain family member 7 isoform 1 [Sus scrofa].
Length = 293
Score = 596 bits (1536), Expect = e-171
Identities = 293/293 (100%), Positives = 293/293 (100%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW
Sbjct: 1 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP
Sbjct: 61 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY
Sbjct: 121 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 293
>ref|XP_003128230.1| PREDICTED: TBC1 domain family member 7 isoform 2 [Sus scrofa].
Length = 266
Score = 526 bits (1356), Expect = e-150
Identities = 266/293 (90%), Positives = 266/293 (90%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL
Sbjct: 1 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL----------------------- 37
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
GILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP
Sbjct: 38 ----GILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 93
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY
Sbjct: 94 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 153
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV
Sbjct: 154 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 213
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 214 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 266
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,584,920
Number of extensions: 807299
Number of successful extensions: 2642
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080211.1| TBC1 domain family member 7 [Mus musculus]. 554 e-158
>ref|NP_080211.1| TBC1 domain family member 7 [Mus musculus].
Length = 293
Score = 554 bits (1428), Expect = e-158
Identities = 267/293 (91%), Positives = 284/293 (96%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
K LLGILPPHH++H++VMAYRK+QY D+LHAL V+RF+SDATPQ EV+L M++LESGKLP
Sbjct: 61 KALLGILPPHHDTHSQVMAYRKDQYHDILHALTVVRFISDATPQAEVYLRMYQLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWI+RCFV QL++KYRD LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWISRCFVKQLNNKYRDALPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLEDSRLLSHLK CSAVS+LPYDLWF+RCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDSRLLSHLKTCSAVSKLPYDLWFQRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,033,856
Number of extensions: 1011516
Number of successful extensions: 3150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3150
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137437.1| TBC1 domain family member 7 isoform a [Homo ... 546 e-155
Alignment gi|NP_001137436.1| TBC1 domain family member 7 isoform a [Homo ... 546 e-155
Alignment gi|NP_057579.1| TBC1 domain family member 7 isoform a [Homo sap... 546 e-155
Alignment gi|NP_001137438.1| TBC1 domain family member 7 isoform b [Homo ... 480 e-135
>ref|NP_001137437.1| TBC1 domain family member 7 isoform a [Homo sapiens].
Length = 293
Score = 546 bits (1408), Expect = e-155
Identities = 266/293 (90%), Positives = 280/293 (95%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLD EKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQ EV+L M++LESGKLP
Sbjct: 61 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEP+DEVFLAIAKAMEEMVEDSVDCYWITR FVNQL++KYRD LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLED RLL+HL+ CSA +LPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHS+
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS 293
>ref|NP_001137436.1| TBC1 domain family member 7 isoform a [Homo sapiens].
Length = 293
Score = 546 bits (1408), Expect = e-155
Identities = 266/293 (90%), Positives = 280/293 (95%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLD EKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQ EV+L M++LESGKLP
Sbjct: 61 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEP+DEVFLAIAKAMEEMVEDSVDCYWITR FVNQL++KYRD LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLED RLL+HL+ CSA +LPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHS+
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS 293
>ref|NP_057579.1| TBC1 domain family member 7 isoform a [Homo sapiens].
Length = 293
Score = 546 bits (1408), Expect = e-155
Identities = 266/293 (90%), Positives = 280/293 (95%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLD EKLCTFSQRFPLPS+YRALVW
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVW 60
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
KVLLGILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQ EV+L M++LESGKLP
Sbjct: 61 KVLLGILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP 120
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEP+DEVFLAIAKAMEEMVEDSVDCYWITR FVNQL++KYRD LPQLPKAFEQY
Sbjct: 121 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY 180
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLED RLL+HL+ CSA +LPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 181 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 240
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHS+
Sbjct: 241 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS 293
>ref|NP_001137438.1| TBC1 domain family member 7 isoform b [Homo sapiens].
Length = 266
Score = 480 bits (1235), Expect = e-135
Identities = 241/293 (82%), Positives = 254/293 (86%)
Frame = +2
Query: 200 MTDDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRLDIEKLCTFSQRFPLPSLYRALVW 379
MT+DSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL
Sbjct: 1 MTEDSQRNFRSVYYEKVGFRGVEEKKSLEILLKDDRL----------------------- 37
Query: 380 KVLLGILPPHHESHARVMAYRKEQYSDVLHALDVIRFVSDATPQVEVFLYMHRLESGKLP 559
GILPPHHESHA+VM YRKEQY DVLHAL V+RFVSDATPQ EV+L M++LESGKLP
Sbjct: 38 ----GILPPHHESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLP 93
Query: 560 RSPSFPLEPEDEVFLAIAKAMEEMVEDSVDCYWITRCFVNQLDSKYRDFLPQLPKAFEQY 739
RSPSFPLEP+DEVFLAIAKAMEEMVEDSVDCYWITR FVNQL++KYRD LPQLPKAFEQY
Sbjct: 94 RSPSFPLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQY 153
Query: 740 LNLEDSRLLSHLKACSAVSRLPYDLWFKRCFAGCLPEPSLQRVWDKVVSGSCKILVFVAV 919
LNLED RLL+HL+ CSA +LPYDLWFKRCFAGCLPE SLQRVWDKVVSGSCKILVFVAV
Sbjct: 154 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 213
Query: 920 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSA 1078
EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHS+
Sbjct: 214 EILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,000,361
Number of extensions: 1209148
Number of successful extensions: 4136
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4134
Number of HSP's successfully gapped: 4
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014518
(1153 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 381 e-103
Sscrofa_Chr09 60 3e-06
>Sscrofa_Chr07
|| Length = 134764511
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 390 taggaatcctgcctccgcaccacgagtcccacgcccgggtgatggcctaccgcaaggagc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041255 taggaatcctgcctccgcaccacgagtcccacgcccgggtgatggcctaccgcaaggagc 10041196
Query: 450 agtactcggacgtcctccacgccctggacgtcatccgcttcgtcagtgacgccacgcccc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041195 agtactcggacgtcctccacgccctggacgtcatccgcttcgtcagtgacgccacgcccc 10041136
Query: 510 aggtcgaggtctttctctacatgcatcggctggagtctgggaagctgccccgaagtccgt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041135 aggtcgaggtctttctctacatgcatcggctggagtctgggaagctgccccgaagtccgt 10041076
Query: 570 cctttccactgg 581
||||||||||||
Sbjct: 10041075 cctttccactgg 10041064
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 30 tgctccctctcccgcgcgggtgtcccgccgtcttcctccatccggcggcccctgggcggc 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048578 tgctccctctcccgcgcgggtgtcccgccgtcttcctccatccggcggcccctgggcggc 10048519
Query: 90 ccccacgtcgtctgcccgctgtcgggtcagcgcaccgggcctggttccgctgcttccccg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048518 ccccacgtcgtctgcccgctgtcgggtcagcgcaccgggcctggttccgctgcttccccg 10048459
Query: 150 gacccattagtctgaatccgggtgtggtttccactactagag 191
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048458 gacccattagtctgaatccgggtgtggtttccactactagag 10048417
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 718 gccgaaggcatttgaacagtacttgaatctagaagacagcaggctgctgagccatctgaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10030416 gccgaaggcatttgaacagtacttgaatctagaagacagcaggctgctgagccatctgaa 10030357
Query: 778 ggcgtgctctgcagtgtccagactgccctatgatctctggttcaagaggtgctttgccgg 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10030356 ggcgtgctctgcagtgtccagactgccctatgatctctggttcaagaggtgctttgccgg 10030297
Query: 838 gtgcttgccggaacccagtttacagagg 865
||||||||||||||||||||||||||||
Sbjct: 10030296 gtgcttgccggaacccagtttacagagg 10030269
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 580 ggagccggaagatgaagtctttcttgccattgccaaggccatggaggagatggtggagga 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10036729 ggagccggaagatgaagtctttcttgccattgccaaggccatggaggagatggtggagga 10036670
Query: 640 cagtgtcgactgttactggatcacgcgatgcttcgtgaaccagttagatagcaagtaccg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10036669 cagtgtcgactgttactggatcacgcgatgcttcgtgaaccagttagatagcaagtaccg 10036610
Query: 700 ggactttctgccccagctg 718
|||||||||||||||||||
Sbjct: 10036609 ggactttctgccccagctg 10036591
Score = 270 bits (136), Expect = 2e-69
Identities = 146/148 (98%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 995 attccccaggacagctcggatgccattgtgagcaaggccatcgacttatggcacaaacac 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10026989 attccccaggacagctcggatgccattgtgagcaaggccatcgacttatggcacaaacac 10026930
Query: 1055 tgcgggacccctgtccattccgcctgaaacactgcgacactgtggacagtcggccaggcc 1114
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 10026929 tgcgggacccctgtccattccgcctg-aacactgtgacactgtggacagtcggccaggcc 10026871
Query: 1115 tgcccagagcattctgtgcttgcgatgt 1142
||||||||||||||||||||||||||||
Sbjct: 10026870 tgcccagagcattctgtgcttgcgatgt 10026843
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 863 agggtttgggataaagttgtcagtggatcctgtaagatactagtttttgtggctgtggaa 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10028681 agggtttgggataaagttgtcagtggatcctgtaagatactagtttttgtggctgtggaa 10028622
Query: 923 attctcttaacctttaaaataaaagtaatggccctgaacagtgcagagaagataacgaag 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10028621 attctcttaacctttaaaataaaagtaatggccctgaacagtgcagagaagataacgaag 10028562
Query: 983 tttctggaaaat 994
||||||||||||
Sbjct: 10028561 tttctggaaaat 10028550
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 190 agaatgaaacatgactgacgactcccagagaaacttccgttcagtatattatgaaaaagt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10047110 agaatgaaacatgactgacgactcccagagaaacttccgttcagtatattatgaaaaagt 10047051
Query: 250 ggggtttcgtggagttgaagaaaagaaatcattagaaattctcctcaaagatgaccgtct 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10047050 ggggtttcgtggagttgaagaaaagaaatcattagaaattctcctcaaagatgaccgtct 10046991
Query: 310 gg 311
||
Sbjct: 10046990 gg 10046989
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 311 gacatcgagaaactctgtactttcagtcagaggttcccgctcccgtccctgtaccgggcg 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10045395 gacatcgagaaactctgtactttcagtcagaggttcccgctcccgtccctgtaccgggcg 10045336
Query: 371 ttggtctggaaggtgctcctagg 393
|||||||||||||||||||||||
Sbjct: 10045335 ttggtctggaaggtgctcctagg 10045313
>Sscrofa_Chr09
|| Length = 153670197
Score = 60.0 bits (30), Expect = 3e-06
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 864 gggtttgggataaagttgtcagtggatcctgtaagatactagtttttgtggctgtgga 921
||||||||||||||| ||| |||||||||||| ||| ||||||||||| || |||||
Sbjct: 133229036 gggtttgggataaaggtgtaagtggatcctgtctgatcctagtttttgtagcagtgga 133228979
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,584,965
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 9
Length of query: 1153
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1132
Effective length of database: 2,808,413,156
Effective search space: 3179123692592
Effective search space used: 3179123692592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)