Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537868.2| PREDICTED: similar to Serum amyloid A-3 protein... 215 3e-56
Alignment gi|XP_534081.1| PREDICTED: similar to Serum amyloid A-3 protein... 209 2e-54
Alignment gi|NP_001003050.1| serum amyloid A1 [Canis lupus familiaris]. 155 4e-38
Alignment gi|XP_855559.1| PREDICTED: serum amyloid A protein [Canis famil... 155 4e-38
>ref|XP_537868.2| PREDICTED: similar to Serum amyloid A-3 protein precursor [Canis
familiaris].
Length = 130
Score = 215 bits (547), Expect = 3e-56
Identities = 101/130 (77%), Positives = 107/130 (82%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL GI+ C L+LGVSSQRW +FLKEAGQG +DMWRAYSDMREANYKNSDKYFHARGNY
Sbjct: 1 MKLLVGILLCSLVLGVSSQRWLTFLKEAGQGTRDMWRAYSDMREANYKNSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D KVISDARE QR+TDLFK GDSGHGVEDS+ADQAAN WGRSGKDPNH
Sbjct: 61 DAAQRGPGGAWAAKVISDAREKSQRITDLFKFGDSGHGVEDSKADQAANEWGRSGKDPNH 120
Query: 421 FRPRGLPDKY 450
FRP GLPDKY
Sbjct: 121 FRPAGLPDKY 130
>ref|XP_534081.1| PREDICTED: similar to Serum amyloid A-3 protein precursor [Canis
familiaris].
Length = 130
Score = 209 bits (531), Expect = 2e-54
Identities = 98/130 (75%), Positives = 104/130 (80%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL GI+ C L+LGVSSQRW +FLKEAGQG +DMWRAYSDMREANYKNSDKYFHARGNY
Sbjct: 1 MKLLVGILLCSLVLGVSSQRWLTFLKEAGQGTRDMWRAYSDMREANYKNSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D KVISDAREN QR+TD K GDSGHG EDS+ADQAAN WGRSGKDPNH
Sbjct: 61 DAARRGPGGAWAAKVISDARENSQRITDRLKFGDSGHGAEDSKADQAANKWGRSGKDPNH 120
Query: 421 FRPRGLPDKY 450
FRP GLP KY
Sbjct: 121 FRPAGLPSKY 130
>ref|NP_001003050.1| serum amyloid A1 [Canis lupus familiaris].
Length = 109
Score = 155 bits (391), Expect = 4e-38
Identities = 77/109 (70%), Positives = 83/109 (76%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL G++FC L+LGVS Q W SF+ EA QGA DMWRAYSDMREANYKNSDKYFHARGNY
Sbjct: 1 MKLFPGLLFCSLVLGVSGQ-WYSFVSEAAQGAWDMWRAYSDMREANYKNSDKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAAN 387
D KVISDAREN QR+TD K GDSGHG EDS+ADQAAN
Sbjct: 60 DAAQRGPGGAWAAKVISDARENSQRITDRLKFGDSGHGAEDSKADQAAN 108
>ref|XP_855559.1| PREDICTED: serum amyloid A protein [Canis familiaris].
Length = 109
Score = 155 bits (391), Expect = 4e-38
Identities = 77/109 (70%), Positives = 83/109 (76%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL G++FC L+LGVS Q W SF+ EA QGA DMWRAYSDMREANYKNSDKYFHARGNY
Sbjct: 1 MKLFPGLLFCSLVLGVSGQ-WYSFVSEAAQGAWDMWRAYSDMREANYKNSDKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAAN 387
D KVISDAREN QR+TD K GDSGHG EDS+ADQAAN
Sbjct: 60 DAAQRGPGGAWAAKVISDARENSQRITDRLKFGDSGHGAEDSKADQAAN 108
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,857,759
Number of extensions: 700498
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2296
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 109
Effective length of database: 15,607,576
Effective search space: 1701225784
Effective search space used: 1701225784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-014542
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851359.2| serum amyloid A 3 [Bos taurus]. 189 1e-48
Alignment gi|XP_002699135.1| PREDICTED: mammary serum amyloid A3.2-like [... 188 3e-48
Alignment gi|XP_875660.1| PREDICTED: mammary serum amyloid A3.2-like [Bos... 188 3e-48
Alignment gi|XP_002699134.1| PREDICTED: serum amyloid A protein-like [Bos... 188 4e-48
Alignment gi|XP_873089.3| PREDICTED: serum amyloid A protein-like isoform... 188 4e-48
Alignment gi|NP_001068728.1| serum amyloid A protein precursor [Bos tauru... 187 5e-48
Alignment gi|NP_001035595.1| serum amyloid A-4 protein precursor [Bos tau... 135 4e-32
>ref|NP_851359.2| serum amyloid A 3 [Bos taurus].
Length = 131
Score = 189 bits (481), Expect = 1e-48
Identities = 93/131 (70%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
M LSTGIIFCFLILGVSSQRW +FLKEAGQGAKDMWRAY DM+EANY+ +DKYFHARGNY
Sbjct: 1 MNLSTGIIFCFLILGVSSQRWGTFLKEAGQGAKDMWRAYQDMKEANYRGADKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVIS+ARE +Q +TD LFK EDS+ADQ AN WGRSGKDPN
Sbjct: 61 DAARRGPGGAWAAKVISNARETIQGITDPLFKGMTRDQVREDSKADQFANEWGRSGKDPN 120
Query: 418 HFRPRGLPDKY 450
HFRP GLPDKY
Sbjct: 121 HFRPAGLPDKY 131
>ref|XP_002699135.1| PREDICTED: mammary serum amyloid A3.2-like [Bos taurus].
Length = 131
Score = 188 bits (478), Expect = 3e-48
Identities = 93/131 (70%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
M LSTGIIFCFLILGVSSQ W +FLKEAGQGAKDMWRAY DM+EANYK +DKYFHARGNY
Sbjct: 1 MNLSTGIIFCFLILGVSSQGWGTFLKEAGQGAKDMWRAYQDMKEANYKGADKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVIS+ARE +Q +TD LFK EDS+ADQAAN WGRSGKDPN
Sbjct: 61 DAAQRGPGGAWAAKVISNARETIQGITDPLFKGMTRDQVREDSKADQAANEWGRSGKDPN 120
Query: 418 HFRPRGLPDKY 450
HFRP GLP+KY
Sbjct: 121 HFRPAGLPNKY 131
>ref|XP_875660.1| PREDICTED: mammary serum amyloid A3.2-like [Bos taurus].
Length = 131
Score = 188 bits (478), Expect = 3e-48
Identities = 93/131 (70%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
M LSTGIIFCFLILGVSSQ W +FLKEAGQGAKDMWRAY DM+EANYK +DKYFHARGNY
Sbjct: 1 MNLSTGIIFCFLILGVSSQGWGTFLKEAGQGAKDMWRAYQDMKEANYKGADKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVIS+ARE +Q +TD LFK EDS+ADQAAN WGRSGKDPN
Sbjct: 61 DAAQRGPGGAWAAKVISNARETIQGITDPLFKGMTRDQVREDSKADQAANEWGRSGKDPN 120
Query: 418 HFRPRGLPDKY 450
HFRP GLP+KY
Sbjct: 121 HFRPAGLPNKY 131
>ref|XP_002699134.1| PREDICTED: serum amyloid A protein-like [Bos taurus].
Length = 130
Score = 188 bits (477), Expect = 4e-48
Identities = 95/131 (72%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG+I C L+LGV SQ W SF EA +GAKDMWRAYSDMREANYK++DKYFHARGNY
Sbjct: 1 MKLFTGLILCSLVLGVHSQ-WMSFFGEAYEGAKDMWRAYSDMREANYKDADKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVISDAREN+QR TD LFK SG G EDSRADQAAN WGRSGKDPN
Sbjct: 60 DAARRGPGGAWAAKVISDARENIQRFTDPLFKGTTSGQGQEDSRADQAANEWGRSGKDPN 119
Query: 418 HFRPRGLPDKY 450
HFRP GLPDKY
Sbjct: 120 HFRPAGLPDKY 130
>ref|XP_873089.3| PREDICTED: serum amyloid A protein-like isoform 2 [Bos taurus].
Length = 130
Score = 188 bits (477), Expect = 4e-48
Identities = 95/131 (72%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG+I C L+LGV SQ W SF EA +GAKDMWRAYSDMREANYK++DKYFHARGNY
Sbjct: 1 MKLFTGLILCSLVLGVHSQ-WMSFFGEAYEGAKDMWRAYSDMREANYKDADKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVISDAREN+QR TD LFK SG G EDSRADQAAN WGRSGKDPN
Sbjct: 60 DAARRGPGGAWAAKVISDARENIQRFTDPLFKGTTSGQGQEDSRADQAANEWGRSGKDPN 119
Query: 418 HFRPRGLPDKY 450
HFRP GLPDKY
Sbjct: 120 HFRPAGLPDKY 130
>ref|NP_001068728.1| serum amyloid A protein precursor [Bos taurus].
Length = 130
Score = 187 bits (476), Expect = 5e-48
Identities = 95/131 (72%), Positives = 100/131 (76%), Gaps = 1/131 (0%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG+I C L+LGV SQ W SF EA +GAKDMWRAYSDMREANYK +DKYFHARGNY
Sbjct: 1 MKLFTGLILCSLVLGVHSQ-WMSFFGEAYEGAKDMWRAYSDMREANYKGADKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTD-LFKHGDSGHGVEDSRADQAANAWGRSGKDPN 417
D KVISDAREN+QR TD LFK SG G EDSRADQAAN WGRSGKDPN
Sbjct: 60 DAAQRGPGGAWAAKVISDARENIQRFTDPLFKGTTSGQGQEDSRADQAANEWGRSGKDPN 119
Query: 418 HFRPRGLPDKY 450
HFRP GLPDKY
Sbjct: 120 HFRPAGLPDKY 130
>ref|NP_001035595.1| serum amyloid A-4 protein precursor [Bos taurus].
Length = 129
Score = 135 bits (339), Expect = 4e-32
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL GI+FC LI+GV+ W SF KEA QGA D+WRAY DMR+AN +NS +YF ARGNY
Sbjct: 1 MKLLIGILFCTLIMGVTGDSWYSFFKEAVQGASDLWRAYWDMRDANVQNSGRYFRARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
+ K+IS+ E +Q GDS +G+ED +++ A WGRSG+DP+H
Sbjct: 61 EAAQRGPGGVWAAKIISNVGEYLQGFLYQIYLGDS-YGLEDQVSNRRAEEWGRSGQDPDH 119
Query: 421 FRPRGLPDKY 450
FRP GLP KY
Sbjct: 120 FRPAGLPKKY 129
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,010,256
Number of extensions: 703584
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2463
Number of HSP's successfully gapped: 7
Length of query: 207
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 110
Effective length of database: 14,471,838
Effective search space: 1591902180
Effective search space used: 1591902180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038017.1| serum amyloid A2 [Sus scrofa]. 245 1e-65
Alignment gi|XP_003122985.1| PREDICTED: serum amyloid A-2 protein-like [S... 205 1e-53
Alignment gi|XP_003122986.2| PREDICTED: serum amyloid A protein-like [Sus... 177 3e-45
Alignment gi|XP_003122987.1| PREDICTED: serum amyloid A-4 protein-like [S... 135 1e-32
>ref|NP_001038017.1| serum amyloid A2 [Sus scrofa].
Length = 130
Score = 245 bits (626), Expect = 1e-65
Identities = 118/130 (90%), Positives = 118/130 (90%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY
Sbjct: 1 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D KVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH
Sbjct: 61 DAAQRGPGGAWAAKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 120
Query: 421 FRPRGLPDKY 450
FRPRGLPDKY
Sbjct: 121 FRPRGLPDKY 130
>ref|XP_003122985.1| PREDICTED: serum amyloid A-2 protein-like [Sus scrofa].
Length = 129
Score = 205 bits (522), Expect = 1e-53
Identities = 102/130 (78%), Positives = 106/130 (81%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG+IFC L+LGV SQ W SFL EA +GAKDM RAYSDMREAN+KNSDKYFHARGNY
Sbjct: 1 MKLFTGLIFCSLVLGVHSQ-WLSFLGEAYEGAKDMLRAYSDMREANFKNSDKYFHARGNY 59
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D KVISDARENVQRVTD KHGDSGHGVEDSRADQAAN WGRSGKDPNH
Sbjct: 60 DAAQRGPGGAWAAKVISDARENVQRVTDWLKHGDSGHGVEDSRADQAANEWGRSGKDPNH 119
Query: 421 FRPRGLPDKY 450
FRP GLPDKY
Sbjct: 120 FRPPGLPDKY 129
>ref|XP_003122986.2| PREDICTED: serum amyloid A protein-like [Sus scrofa].
Length = 131
Score = 177 bits (450), Expect = 3e-45
Identities = 84/100 (84%), Positives = 84/100 (84%)
Frame = +1
Query: 151 GAKDMWRAYSDMREANYKNSDKYFHARGNYDXXXXXXXXXXXXKVISDARENVQRVTDLF 330
GAKDMWRAYSDMREANYKNSDKYFHARGNYD KVISDARENVQRVTD
Sbjct: 32 GAKDMWRAYSDMREANYKNSDKYFHARGNYDAAQRGPGGAWAAKVISDARENVQRVTDWL 91
Query: 331 KHGDSGHGVEDSRADQAANAWGRSGKDPNHFRPRGLPDKY 450
KHGDSGHGVEDSRADQAAN WGRSGKDPNHFRP GLPDKY
Sbjct: 92 KHGDSGHGVEDSRADQAANEWGRSGKDPNHFRPPGLPDKY 131
>ref|XP_003122987.1| PREDICTED: serum amyloid A-4 protein-like [Sus scrofa].
Length = 128
Score = 135 bits (341), Expect = 1e-32
Identities = 67/130 (51%), Positives = 83/130 (63%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL G+IFC L++GVSS W SF KEA QGA D+WRAY DM+EANY+NS +YF ARGNY
Sbjct: 1 MKLFIGLIFCSLVMGVSSDGWFSFFKEAVQGASDLWRAYWDMKEANYQNSGRYFRARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
+ K+IS+ E Q + G S ED +++ A WGRSG+DP+H
Sbjct: 61 EAAQRGPGGIWAAKIISNVGEYFQGLLQYL--GSSSEREEDQVSNRRAEEWGRSGQDPDH 118
Query: 421 FRPRGLPDKY 450
FRP GLP KY
Sbjct: 119 FRPAGLPKKY 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,272,078
Number of extensions: 473041
Number of successful extensions: 1540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1538
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 113
Effective length of database: 9,003,614
Effective search space: 1017408382
Effective search space used: 1017408382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035445.1| serum amyloid A-3 protein precursor [Mus muscul... 178 2e-45
Alignment gi|NP_033143.1| serum amyloid A-1 protein precursor [Mus muscul... 140 1e-33
Alignment gi|NP_035446.1| serum amyloid A-4 protein precursor [Mus muscul... 137 8e-33
Alignment gi|NP_035444.1| serum amyloid A-2 protein precursor [Mus muscul... 134 4e-32
>ref|NP_035445.1| serum amyloid A-3 protein precursor [Mus musculus].
Length = 122
Score = 178 bits (452), Expect = 2e-45
Identities = 87/130 (66%), Positives = 95/130 (73%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MK S II C LILGV SQRW F+KEAGQG++DMWRAYSDM++AN+KNSDKYFHARGNY
Sbjct: 1 MKPSIAIILCILILGVDSQRWVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D KVISDARE VQ+ T GHG EDSRADQ AN WGRSGKDPNH
Sbjct: 61 DAARRGPGGAWAAKVISDAREAVQKFT--------GHGAEDSRADQFANEWGRSGKDPNH 112
Query: 421 FRPRGLPDKY 450
FRP GLP +Y
Sbjct: 113 FRPAGLPKRY 122
>ref|NP_033143.1| serum amyloid A-1 protein precursor [Mus musculus].
Length = 122
Score = 140 bits (352), Expect = 1e-33
Identities = 73/130 (56%), Positives = 85/130 (65%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL T ++FC L+LGV + SF+ EA QGA DMWRAY+DM+EAN+KNSDKYFHARGNY
Sbjct: 1 MKLLTSLVFCSLLLGVCHGGFFSFVHEAFQGAGDMWRAYTDMKEANWKNSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D + ISD RE Q G G ED+ ADQ AN GRSGKDPN+
Sbjct: 61 DAAQRGPGGVWAAEKISDGREAFQEF--------FGRGHEDTIADQEANRHGRSGKDPNY 112
Query: 421 FRPRGLPDKY 450
+RP GLPDKY
Sbjct: 113 YRPPGLPDKY 122
>ref|NP_035446.1| serum amyloid A-4 protein precursor [Mus musculus].
Length = 130
Score = 137 bits (344), Expect = 8e-33
Identities = 64/130 (49%), Positives = 85/130 (65%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
M+L+T I+ C L LGVS W SF +EA QG D+WRAY D EANY+N+D+YF+ARGNY
Sbjct: 1 MRLATVIVLCSLFLGVSGDGWYSFFREAVQGTWDLWRAYRDNLEANYQNADQYFYARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
+ K+IS +R+ Q + + + G HG+E +A Q A WGRSGK+PNH
Sbjct: 61 EAQQRGSGGIWAAKIISTSRKYFQGLLNRYYFGIRNHGLETLQATQKAEEWGRSGKNPNH 120
Query: 421 FRPRGLPDKY 450
FRP GLP+K+
Sbjct: 121 FRPEGLPEKF 130
>ref|NP_035444.1| serum amyloid A-2 protein precursor [Mus musculus].
Length = 122
Score = 134 bits (338), Expect = 4e-32
Identities = 70/130 (53%), Positives = 84/130 (64%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL T ++FC L+LGV + SF+ EA QGA DMWRAY+DM+EA +K+ DKYFHARGNY
Sbjct: 1 MKLLTSLVFCSLLLGVCHGGFFSFIGEAFQGAGDMWRAYTDMKEAGWKDGDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D + ISDARE+ Q G G ED+ ADQ AN GRSGKDPN+
Sbjct: 61 DAAQRGPGGVWAAEKISDARESFQEF--------FGRGHEDTMADQEANRHGRSGKDPNY 112
Query: 421 FRPRGLPDKY 450
+RP GLP KY
Sbjct: 113 YRPPGLPAKY 122
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,593,205
Number of extensions: 583553
Number of successful extensions: 1764
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 4
Length of query: 207
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 110
Effective length of database: 12,704,067
Effective search space: 1397447370
Effective search space used: 1397447370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171477.1| serum amyloid A protein preproprotein [Homo ... 172 2e-43
Alignment gi|NP_000322.2| serum amyloid A protein preproprotein [Homo sap... 172 2e-43
Alignment gi|NP_954630.1| serum amyloid A protein preproprotein [Homo sap... 172 2e-43
Alignment gi|NP_110381.2| serum amyloid A2 isoform a [Homo sapiens]. 167 5e-42
Alignment gi|NP_001186673.1| SAA2-SAA2 protein [Homo sapiens]. 134 6e-32
Alignment gi|NP_006503.2| serum amyloid A-4 protein precursor [Homo sapie... 132 3e-31
Alignment gi|NP_001120852.1| serum amyloid A2 isoform b [Homo sapiens]. 97 8e-21
>ref|NP_001171477.1| serum amyloid A protein preproprotein [Homo sapiens].
Length = 122
Score = 172 bits (437), Expect = 2e-43
Identities = 86/130 (66%), Positives = 95/130 (73%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+LGVSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D +VISDAREN+QR GHG EDS ADQAAN WGRSGKDPNH
Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRF--------FGHGAEDSLADQAANEWGRSGKDPNH 112
Query: 421 FRPRGLPDKY 450
FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122
>ref|NP_000322.2| serum amyloid A protein preproprotein [Homo sapiens].
Length = 122
Score = 172 bits (437), Expect = 2e-43
Identities = 86/130 (66%), Positives = 95/130 (73%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+LGVSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D +VISDAREN+QR GHG EDS ADQAAN WGRSGKDPNH
Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRF--------FGHGAEDSLADQAANEWGRSGKDPNH 112
Query: 421 FRPRGLPDKY 450
FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122
>ref|NP_954630.1| serum amyloid A protein preproprotein [Homo sapiens].
Length = 122
Score = 172 bits (437), Expect = 2e-43
Identities = 86/130 (66%), Positives = 95/130 (73%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+LGVSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D +VISDAREN+QR GHG EDS ADQAAN WGRSGKDPNH
Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRF--------FGHGAEDSLADQAANEWGRSGKDPNH 112
Query: 421 FRPRGLPDKY 450
FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122
>ref|NP_110381.2| serum amyloid A2 isoform a [Homo sapiens].
Length = 122
Score = 167 bits (424), Expect = 5e-42
Identities = 83/130 (63%), Positives = 95/130 (73%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+L VSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D +VIS+AREN+QR+T G G EDS ADQAAN WGRSG+DPNH
Sbjct: 61 DAAKRGPGGAWAAEVISNARENIQRLT--------GRGAEDSLADQAANKWGRSGRDPNH 112
Query: 421 FRPRGLPDKY 450
FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122
>ref|NP_001186673.1| SAA2-SAA2 protein [Homo sapiens].
Length = 208
Score = 134 bits (337), Expect = 6e-32
Identities = 66/142 (46%), Positives = 91/142 (64%)
Frame = +1
Query: 25 PGALAGRHSQSRMKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYK 204
PG S M+L TGI+FC L++GV+S+ W SF KEA QG DM RAY D+ +N++
Sbjct: 67 PGGAWAAEVISTMRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQ 126
Query: 205 NSDKYFHARGNYDXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAA 384
NS++Y +ARGNYD K+IS +R +Q + D + G+S +EDS++++ A
Sbjct: 127 NSNRYLYARGNYDAAQRGPGGVWAAKLISRSRVYLQGLIDCYLFGNSSTVLEDSKSNEKA 186
Query: 385 NAWGRSGKDPNHFRPRGLPDKY 450
WGRSGKDP+ FRP GLP KY
Sbjct: 187 EEWGRSGKDPDRFRPDGLPKKY 208
Score = 98.6 bits (244), Expect = 4e-21
Identities = 49/80 (61%), Positives = 56/80 (70%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+L VSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDAR 300
D +VIS R
Sbjct: 61 DAAKRGPGGAWAAEVISTMR 80
>ref|NP_006503.2| serum amyloid A-4 protein precursor [Homo sapiens].
Length = 130
Score = 132 bits (331), Expect = 3e-31
Identities = 63/130 (48%), Positives = 88/130 (67%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
M+L TGI+FC L++GV+S+ W SF KEA QG DM RAY D+ +N++NS++Y +ARGNY
Sbjct: 1 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
Query: 241 DXXXXXXXXXXXXKVISDARENVQRVTDLFKHGDSGHGVEDSRADQAANAWGRSGKDPNH 420
D K+IS +R +Q + D + G+S +EDS++++ A WGRSGKDP+
Sbjct: 61 DAAQRGPGGVWAAKLISRSRVYLQGLIDCYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120
Query: 421 FRPRGLPDKY 450
FRP GLP KY
Sbjct: 121 FRPDGLPKKY 130
>ref|NP_001120852.1| serum amyloid A2 isoform b [Homo sapiens].
Length = 83
Score = 97.4 bits (241), Expect = 8e-21
Identities = 48/77 (62%), Positives = 55/77 (71%)
Frame = +1
Query: 61 MKLSTGIIFCFLILGVSSQRWASFLKEAGQGAKDMWRAYSDMREANYKNSDKYFHARGNY 240
MKL TG++FC L+L VSS+ + SFL EA GA+DMWRAYSDMREANY SDKYFHARGNY
Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60
Query: 241 DXXXXXXXXXXXXKVIS 291
D +VIS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,449,624
Number of extensions: 693305
Number of successful extensions: 2258
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2253
Number of HSP's successfully gapped: 8
Length of query: 207
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 109
Effective length of database: 15,066,692
Effective search space: 1642269428
Effective search space used: 1642269428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014542
(621 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 618 e-175
>Sscrofa_Chr02
|| Length = 162569375
Score = 618 bits (312), Expect = e-175
Identities = 312/312 (100%)
Strand = Plus / Plus
Query: 288 cagcgatgccagagagaatgtccagagagtcacagacttgtttaagcatggagacagtgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082633 cagcgatgccagagagaatgtccagagagtcacagacttgtttaagcatggagacagtgg 44082692
Query: 348 ccacggagtggaggactcaagggctgaccaggctgccaatgcatggggccggagtggcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082693 ccacggagtggaggactcaagggctgaccaggctgccaatgcatggggccggagtggcaa 44082752
Query: 408 ggaccccaaccacttcagacctcgtggcctgcctgacaagtactgagctgcctctgcctc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082753 ggaccccaaccacttcagacctcgtggcctgcctgacaagtactgagctgcctctgcctc 44082812
Query: 468 tgctcaggagatgggctgtgagcctcctgtgagcaggcttcgtgctgagctaggttatag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082813 tgctcaggagatgggctgtgagcctcctgtgagcaggcttcgtgctgagctaggttatag 44082872
Query: 528 tattgtgcatctgtagtacttgatagttggtaaaaagcatataaaaatgtgtaataaatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082873 tattgtgcatctgtagtacttgatagttggtaaaaagcatataaaaatgtgtaataaatg 44082932
Query: 588 cttgtgaattcc 599
||||||||||||
Sbjct: 44082933 cttgtgaattcc 44082944
Score = 367 bits (185), Expect = 5e-99
Identities = 203/209 (97%)
Strand = Plus / Minus
Query: 288 cagcgatgccagagagaatgtccagagagtcacagacttgtttaagcatggagacagtgg 347
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 44025065 cagcgatgccagagagaatgtccagagagtcacagactggttgaagcatggagacagtgg 44025006
Query: 348 ccacggagtggaggactcaagggctgaccaggctgccaatgcatggggccggagtggcaa 407
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44025005 ccacggagtggaggactcgagggctgaccaggctgccaatgaatggggccggagtggcaa 44024946
Query: 408 ggaccccaaccacttcagacctcgtggcctgcctgacaagtactgagctgcctctgcctc 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 44024945 ggaccccaaccacttcagacctcctggcctgcctgacaagtactgagctgcctctgcctc 44024886
Query: 468 tgctcaggagatgggctgtgagcctcctg 496
|||||||||||||||||||||||| ||||
Sbjct: 44024885 tgctcaggagatgggctgtgagccccctg 44024857
Score = 367 bits (185), Expect = 5e-99
Identities = 203/209 (97%)
Strand = Plus / Plus
Query: 288 cagcgatgccagagagaatgtccagagagtcacagacttgtttaagcatggagacagtgg 347
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 44039374 cagcgatgccagagagaatgtccagagagtcacagactggttgaagcatggagacagtgg 44039433
Query: 348 ccacggagtggaggactcaagggctgaccaggctgccaatgcatggggccggagtggcaa 407
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44039434 ccacggagtggaggactcgagggctgaccaggctgccaatgaatggggccggagtggcaa 44039493
Query: 408 ggaccccaaccacttcagacctcgtggcctgcctgacaagtactgagctgcctctgcctc 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 44039494 ggaccccaaccacttcagacctcctggcctgcctgacaagtactgagctgcctctgcctc 44039553
Query: 468 tgctcaggagatgggctgtgagcctcctg 496
|||||||||||||||||||||||| ||||
Sbjct: 44039554 tgctcaggagatgggctgtgagccccctg 44039582
Score = 272 bits (137), Expect = 2e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 150 aggggctaaagacatgtggagagcctactcggacatgagagaagccaattacaaaaattc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44082092 aggggctaaagacatgtggagagcctactcggacatgagagaagccaattacaaaaattc 44082151
Query: 210 ggacaagtacttccatgcccggggcaactatgatgctgcccgaaggggacctgggggcgc 269
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44082152 ggacaagtacttccatgcccggggcaactatgatgctgcccaaaggggacctgggggcgc 44082211
Query: 270 ctgggctgctaaagtgatcag 290
|||||||||||||||||||||
Sbjct: 44082212 ctgggctgctaaagtgatcag 44082232
Score = 248 bits (125), Expect = 3e-63
Identities = 137/141 (97%)
Strand = Plus / Minus
Query: 150 aggggctaaagacatgtggagagcctactcggacatgagagaagccaattacaaaaattc 209
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44025606 aggggccaaagacatgtggagagcctactcggacatgagagaagccaattacaaaaattc 44025547
Query: 210 ggacaagtacttccatgcccggggcaactatgatgctgcccgaaggggacctgggggcgc 269
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 44025546 ggacaagtacttccacgcccggggcaactatgatgctgcccaaaggggacctgggggtgc 44025487
Query: 270 ctgggctgctaaagtgatcag 290
|||||||||||||||||||||
Sbjct: 44025486 ctgggctgctaaagtgatcag 44025466
Score = 240 bits (121), Expect = 7e-61
Identities = 136/141 (96%)
Strand = Plus / Plus
Query: 150 aggggctaaagacatgtggagagcctactcggacatgagagaagccaattacaaaaattc 209
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 44038834 aggggccaaagacatgttgagagcctactcggacatgagagaagccaatttcaaaaattc 44038893
Query: 210 ggacaagtacttccatgcccggggcaactatgatgctgcccgaaggggacctgggggcgc 269
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44038894 agacaagtacttccatgcccggggcaactatgatgctgcccaaaggggacctgggggcgc 44038953
Query: 270 ctgggctgctaaagtgatcag 290
|||||||||||||||||||||
Sbjct: 44038954 ctgggctgctaaagtgatcag 44038974
Score = 194 bits (98), Expect = 4e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 55 agcaggatgaagctttccacgggcatcattttctgcttcctgatcctgggtgtcagcagc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44079069 agcaggatgaagctttccacgggcatcattttctgcttcctgatcctgggtgtcagcagc 44079128
Query: 115 cagagatgggcatcattcctcaaggaagctggtcaagg 152
||||||||||||||||||||||||||||||||||||||
Sbjct: 44079129 cagagatgggcatcattcctcaaggaagctggtcaagg 44079166
Score = 111 bits (56), Expect = 5e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1 ggcggcactggcagctcagcttcaccaggagccttggcaggaaggcacagccaaag 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44078429 ggcggcactggcagctcagcttcaccaggagccttggcaggaaggcacagccaaag 44078484
Score = 79.8 bits (40), Expect = 2e-12
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 164 tgtggagagcctactcggacatgagagaagccaattacaaaaattcggacaagtacttcc 223
||||||||||||||| |||||||| ||||||||||||| ||||||| | || ||||| |
Sbjct: 44058170 tgtggagagcctactgggacatgaaagaagccaattaccaaaattcaggcagatactttc 44058229
Query: 224 atgcccggggcaactatgatgctgcccgaaggggacctgggggc 267
||| || || ||||| || ||||||| |||||| |||||||||
Sbjct: 44058230 gtgctcgagggaactacgaggctgcccaaaggggccctgggggc 44058273
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,619,019
Number of extensions: 559
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 9
Length of query: 621
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 600
Effective length of database: 2,808,413,156
Effective search space: 1685047893600
Effective search space used: 1685047893600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)