Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537411.1| PREDICTED: similar to phosphatase subunit gene ... 602 e-173
Alignment gi|XP_862050.1| PREDICTED: similar to phosphatase subunit gene ... 602 e-173
Alignment gi|XP_861961.1| PREDICTED: similar to phosphatase subunit gene ... 387 e-108
Alignment gi|XP_862082.1| PREDICTED: similar to phosphatase subunit gene ... 336 2e-93
Alignment gi|XP_862020.1| PREDICTED: similar to phosphatase subunit gene ... 316 2e-86
Alignment gi|XP_864635.1| PREDICTED: similar to alpha isoform of regulato... 50 3e-06
Alignment gi|XP_542792.2| PREDICTED: similar to alpha isoform of regulato... 50 3e-06
>ref|XP_537411.1| PREDICTED: similar to phosphatase subunit gene g4-1 isoform 1 [Canis
familiaris].
Length = 453
Score = 602 bits (1552), Expect(2) = e-173
Identities = 297/316 (93%), Positives = 300/316 (94%)
Frame = +2
Query: 68 MDWKEILRRRLAMPNTGPNKKKTEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 247
MDWKE LRRRLAMPNT N+KK+EQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY
Sbjct: 1 MDWKESLRRRLAMPNTRTNRKKSEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 60
Query: 248 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 427
YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY
Sbjct: 61 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 120
Query: 428 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 607
ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY
Sbjct: 121 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 180
Query: 608 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 787
DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI
Sbjct: 181 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 240
Query: 788 QDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 967
QDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR
Sbjct: 241 QDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 300
Query: 968 YGTATMTNVFLDRVFK 1015
YGTATMTNVFLDRVF+
Sbjct: 301 YGTATMTNVFLDRVFQ 316
Score = 25.4 bits (54), Expect(2) = e-173
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 315 FQECLTYDGE 324
>ref|XP_862050.1| PREDICTED: similar to phosphatase subunit gene g4-1 isoform 4 [Canis
familiaris].
Length = 407
Score = 602 bits (1552), Expect(2) = e-173
Identities = 297/316 (93%), Positives = 300/316 (94%)
Frame = +2
Query: 68 MDWKEILRRRLAMPNTGPNKKKTEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 247
MDWKE LRRRLAMPNT N+KK+EQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY
Sbjct: 1 MDWKESLRRRLAMPNTRTNRKKSEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 60
Query: 248 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 427
YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY
Sbjct: 61 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 120
Query: 428 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 607
ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY
Sbjct: 121 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 180
Query: 608 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 787
DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI
Sbjct: 181 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 240
Query: 788 QDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 967
QDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR
Sbjct: 241 QDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 300
Query: 968 YGTATMTNVFLDRVFK 1015
YGTATMTNVFLDRVF+
Sbjct: 301 YGTATMTNVFLDRVFQ 316
Score = 25.4 bits (54), Expect(2) = e-173
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 315 FQECLTYDGE 324
>ref|XP_861961.1| PREDICTED: similar to phosphatase subunit gene g4-1 isoform 2 [Canis
familiaris].
Length = 343
Score = 387 bits (993), Expect(2) = e-108
Identities = 192/206 (93%), Positives = 193/206 (93%)
Frame = +2
Query: 398 MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL 577
MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL
Sbjct: 1 MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL 60
Query: 578 HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL 757
HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL
Sbjct: 61 HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL 120
Query: 758 DPLRTGKIKIQDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHN 937
DPLRTGKIKIQDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHN
Sbjct: 121 DPLRTGKIKIQDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHN 180
Query: 938 GMLSKEELSRYGTATMTNVFLDRVFK 1015
GMLSKEELSRYGTATMTNVFLDRVF+
Sbjct: 181 GMLSKEELSRYGTATMTNVFLDRVFQ 206
Score = 25.4 bits (54), Expect(2) = e-108
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 205 FQECLTYDGE 214
>ref|XP_862082.1| PREDICTED: similar to phosphatase subunit gene g4-1 isoform 5 [Canis
familiaris].
Length = 323
Score = 336 bits (862), Expect(2) = 2e-93
Identities = 167/182 (91%), Positives = 169/182 (92%)
Frame = +2
Query: 470 KQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLE 649
+QFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLE
Sbjct: 5 RQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLRESDLE 64
Query: 650 NYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFXXXXXX 829
NYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSF
Sbjct: 65 NYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFLDDLLE 124
Query: 830 XXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRV 1009
SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRV
Sbjct: 125 LRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRV 184
Query: 1010 FK 1015
F+
Sbjct: 185 FQ 186
Score = 25.4 bits (54), Expect(2) = 2e-93
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 185 FQECLTYDGE 194
>ref|XP_862020.1| PREDICTED: similar to phosphatase subunit gene g4-1 isoform 3
[Canis familiaris].
Length = 171
Score = 316 bits (810), Expect = 2e-86
Identities = 157/170 (92%), Positives = 157/170 (92%)
Frame = +2
Query: 398 MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL 577
MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL
Sbjct: 1 MIGEEAMINYENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWL 60
Query: 578 HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL 757
HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL
Sbjct: 61 HQTRIGLSLYDVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFL 120
Query: 758 DPLRTGKIKIQDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYG 907
DPLRTGKIKIQDILACSF SKES ETNWFSAPSALRVYG
Sbjct: 121 DPLRTGKIKIQDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYG 170
>ref|XP_864635.1| PREDICTED: similar to alpha isoform of regulatory subunit B, protein
phosphatase 2 isoform 2 isoform 2 [Canis familiaris].
Length = 532
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 629 LRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQDILA 802
L + D + +++ T P L L+ + F+S Y+ T +++ F+ ++ +GKI +I
Sbjct: 192 LEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRK 251
Query: 803 CSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTAT 982
+F + T++FS +Y ++ LD DH+ +S+ +LSRY
Sbjct: 252 SNFLQTLALLEEEEDINQI--TDYFSYEHFYVIYCKFWELDSDHDLYISQADLSRYNDQA 309
Query: 983 MTNVFLDRVF 1012
+N ++R+F
Sbjct: 310 SSNRIIERIF 319
>ref|XP_542792.2| PREDICTED: similar to alpha isoform of regulatory subunit B, protein
phosphatase 2 isoform 1 isoform 1 [Canis familiaris].
Length = 1152
Score = 50.4 bits (119), Expect = 3e-06
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 629 LRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQDILA 802
L + D + +++ T P L L+ + F+S Y+ T +++ F+ ++ +GKI +I
Sbjct: 812 LEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWSGKITSTEIRK 871
Query: 803 CSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTAT 982
+F + T++FS +Y ++ LD DH+ +S+ +LSRY
Sbjct: 872 SNFLQTLALLEEEEDINQI--TDYFSYEHFYVIYCKFWELDSDHDLYISQADLSRYNDQA 929
Query: 983 MTNVFLDRVF 1012
+N ++R+F
Sbjct: 930 SSNRIIERIF 939
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,674,852
Number of extensions: 853247
Number of successful extensions: 2221
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2219
Number of HSP's successfully gapped: 11
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014555
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015645.1| serine/threonine-protein phosphatase 2A regu... 600 e-172
Alignment gi|NP_001095816.1| protein phosphatase 2, regulatory subunit B'... 51 2e-06
>ref|NP_001015645.1| serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma [Bos taurus].
Length = 453
Score = 600 bits (1548), Expect(2) = e-172
Identities = 296/316 (93%), Positives = 300/316 (94%)
Frame = +2
Query: 68 MDWKEILRRRLAMPNTGPNKKKTEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 247
MDWKEILRRRLA P+T P+KKK+EQELKDEEMDLFTKYYSEWKG RKNTNEFYKTIPRFY
Sbjct: 1 MDWKEILRRRLATPSTSPHKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFY 60
Query: 248 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 427
YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY
Sbjct: 61 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 120
Query: 428 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 607
ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY
Sbjct: 121 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 180
Query: 608 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 787
DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI
Sbjct: 181 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 240
Query: 788 QDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 967
QDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR
Sbjct: 241 QDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 300
Query: 968 YGTATMTNVFLDRVFK 1015
YGTATMTNVFLDRVF+
Sbjct: 301 YGTATMTNVFLDRVFQ 316
Score = 25.4 bits (54), Expect(2) = e-172
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 315 FQECLTYDGE 324
>ref|NP_001095816.1| protein phosphatase 2, regulatory subunit B'', alpha [Bos taurus].
Length = 530
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +2
Query: 629 LRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQDILA 802
L + D + +++ T P L L+ + F+S Y+ T +++ F+ ++ +GKI +I
Sbjct: 192 LEQDDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWSGKITATEIRK 251
Query: 803 CSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTAT 982
+F + T++FS +Y ++ LD DH+ +S+ +LSRY
Sbjct: 252 SNFLQTLALLEEEEDINQI--TDYFSYEHFYVIYCKFWELDSDHDLYISQADLSRYNDQA 309
Query: 983 MTNVFLDRVF 1012
+N ++R+F
Sbjct: 310 SSNRIIERIF 319
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,037,405
Number of extensions: 822975
Number of successful extensions: 2249
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2248
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,484,922
Number of extensions: 525014
Number of successful extensions: 1385
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 0
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067504.2| serine/threonine-protein phosphatase 2A regulat... 597 e-171
Alignment gi|XP_001473677.2| PREDICTED: serine/threonine-protein phosphat... 221 5e-59
Alignment gi|XP_001473637.2| PREDICTED: serine/threonine-protein phosphat... 221 5e-59
Alignment gi|NP_001154834.1| protein phosphatase 2, regulatory subunit B'... 53 5e-07
Alignment gi|NP_742156.2| protein phosphatase 2, regulatory subunit B'', ... 53 5e-07
>ref|NP_067504.2| serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma [Mus musculus].
Length = 453
Score = 597 bits (1538), Expect(2) = e-171
Identities = 293/316 (92%), Positives = 298/316 (94%)
Frame = +2
Query: 68 MDWKEILRRRLAMPNTGPNKKKTEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 247
MDWK++LRRRLA PNT P +KK+EQELKDEEMDLFTKYYSEWKG RKNTNEFYKTIPRFY
Sbjct: 1 MDWKDVLRRRLASPNTDPKRKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFY 60
Query: 248 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 427
YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQ PPMIGEEAMINY
Sbjct: 61 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQIPPMIGEEAMINY 120
Query: 428 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 607
ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY
Sbjct: 121 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 180
Query: 608 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 787
DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI
Sbjct: 181 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 240
Query: 788 QDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 967
QDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR
Sbjct: 241 QDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 300
Query: 968 YGTATMTNVFLDRVFK 1015
YGTATMTNVFLDRVF+
Sbjct: 301 YGTATMTNVFLDRVFQ 316
Score = 25.4 bits (54), Expect(2) = e-171
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 315 FQECLTYDGE 324
>ref|XP_001473677.2| PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit
B'' subunit gamma-like [Mus musculus].
Length = 303
Score = 221 bits (564), Expect(2) = 5e-59
Identities = 110/127 (86%), Positives = 113/127 (88%)
Frame = +2
Query: 635 ESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFX 814
+ DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSF
Sbjct: 34 KKDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFL 93
Query: 815 XXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNV 994
SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMT+V
Sbjct: 94 DDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTSV 153
Query: 995 FLDRVFK 1015
FLDRVF+
Sbjct: 154 FLDRVFQ 160
Score = 25.4 bits (54), Expect(2) = 5e-59
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 159 FQECLTYDGE 168
>ref|XP_001473637.2| PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit
B'' subunit gamma-like [Mus musculus].
Length = 303
Score = 221 bits (564), Expect(2) = 5e-59
Identities = 110/127 (86%), Positives = 113/127 (88%)
Frame = +2
Query: 635 ESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFX 814
+ DLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSF
Sbjct: 34 KKDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFL 93
Query: 815 XXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNV 994
SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMT+V
Sbjct: 94 DDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTSV 153
Query: 995 FLDRVFK 1015
FLDRVF+
Sbjct: 154 FLDRVFQ 160
Score = 25.4 bits (54), Expect(2) = 5e-59
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 159 FQECLTYDGE 168
>ref|NP_001154834.1| protein phosphatase 2, regulatory subunit B'', alpha isoform 1 [Mus
musculus].
Length = 1150
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Frame = +2
Query: 626 YLRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQDIL 799
YL + D + +++ T P L L+ + F+S Y+ T V++ F+ ++ +GKI +I
Sbjct: 811 YLEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVVQRIFYTVNRSWSGKITSTEIR 870
Query: 800 ACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTA 979
+F + T++FS +Y ++ LD DH+ +S+ +LSRY
Sbjct: 871 KSNFLQTLALLEEEEDINQI--TDYFSYEHFYVIYCKFWELDGDHDLYISQADLSRYNDQ 928
Query: 980 TMTNVFLDRVF 1012
+N ++R+F
Sbjct: 929 ASSNRIIERIF 939
>ref|NP_742156.2| protein phosphatase 2, regulatory subunit B'', alpha isoform 2 [Mus
musculus].
Length = 530
Score = 52.8 bits (125), Expect = 5e-07
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Frame = +2
Query: 626 YLRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQDIL 799
YL + D + +++ T P L L+ + F+S Y+ T V++ F+ ++ +GKI +I
Sbjct: 191 YLEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRYITTVVQRIFYTVNRSWSGKITSTEIR 250
Query: 800 ACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTA 979
+F + T++FS +Y ++ LD DH+ +S+ +LSRY
Sbjct: 251 KSNFLQTLALLEEEEDINQI--TDYFSYEHFYVIYCKFWELDGDHDLYISQADLSRYNDQ 308
Query: 980 TMTNVFLDRVF 1012
+N ++R+F
Sbjct: 309 ASSNRIIERIF 319
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,955,440
Number of extensions: 729681
Number of successful extensions: 1895
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1888
Number of HSP's successfully gapped: 8
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060387.2| serine/threonine-protein phosphatase 2A regulat... 600 e-172
Alignment gi|NP_037371.2| serine/threonine-protein phosphatase 2A regulat... 52 1e-06
>ref|NP_060387.2| serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit gamma [Homo sapiens].
Length = 453
Score = 600 bits (1546), Expect(2) = e-172
Identities = 296/316 (93%), Positives = 299/316 (94%)
Frame = +2
Query: 68 MDWKEILRRRLAMPNTGPNKKKTEQELKDEEMDLFTKYYSEWKGDRKNTNEFYKTIPRFY 247
MDWKE+LRRRLA PNT PNKKK+EQELKDEEMDLFTKYYSEWKG RKNTNEFYKTIPRFY
Sbjct: 1 MDWKEVLRRRLATPNTCPNKKKSEQELKDEEMDLFTKYYSEWKGGRKNTNEFYKTIPRFY 60
Query: 248 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 427
YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY
Sbjct: 61 YRLPAEDEVLLQKLREESRAVFLQRKSRELLDNEELQNLWFLLDKHQTPPMIGEEAMINY 120
Query: 428 ENFLKVGEKAGPKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 607
ENFLKVGEKAG KCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY
Sbjct: 121 ENFLKVGEKAGAKCKQFFTAKVFAKLLHTDSYGRISIMQFFNYVMRKVWLHQTRIGLSLY 180
Query: 608 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 787
DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI
Sbjct: 181 DVAGQGYLRESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKI 240
Query: 788 QDILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 967
QDILACSF SKES ETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR
Sbjct: 241 QDILACSFLDDLLELRDEELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSR 300
Query: 968 YGTATMTNVFLDRVFK 1015
YGTATMTNVFLDRVF+
Sbjct: 301 YGTATMTNVFLDRVFQ 316
Score = 25.4 bits (54), Expect(2) = e-172
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 1009 FQECLTYDGK 1038
FQECLTYDG+
Sbjct: 315 FQECLTYDGE 324
>ref|NP_037371.2| serine/threonine-protein phosphatase 2A regulatory subunit B''
subunit beta [Homo sapiens].
Length = 575
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 617 GQGYLRESDLENYILELIPTLPQLDGLEKS--FYSFYVCTAVRKFFFFLDPLRTGKIKIQ 790
G YL + D ++ +++ T P L L+++ F+S Y+ T +++ F+ ++ +G+I
Sbjct: 225 GCNYLVQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCA 284
Query: 791 DILACSFXXXXXXXXXXXXSKESPETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRY 970
++ SF + T +FS +Y ++ LD DH+ ++ ++L+R+
Sbjct: 285 ELRRSSFLQNVALLEEEADINQL--TEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARH 342
Query: 971 GTATMTNVFLDRVF 1012
++ +DR+F
Sbjct: 343 NDHALSTKMIDRIF 356
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,158,261
Number of extensions: 850755
Number of successful extensions: 2386
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2381
Number of HSP's successfully gapped: 3
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014555
(1046 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,263,507
Number of extensions: 333
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 0
Length of query: 1046
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1025
Effective length of database: 2,808,413,156
Effective search space: 2878623484900
Effective search space used: 2878623484900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)