Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzym... 540 e-154
Alignment gi|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzym... 380 e-106
Alignment gi|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 334 1e-91
Alignment gi|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 318 8e-87
Alignment gi|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 318 8e-87
Alignment gi|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 318 8e-87
Alignment gi|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 318 8e-87
Alignment gi|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzy... 313 2e-85
Alignment gi|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 303 2e-82
>ref|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 2 [Canis
familiaris].
Length = 584
Score = 540 bits (1390), Expect(2) = e-154
Identities = 260/276 (94%), Positives = 266/276 (96%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
MLSR +IVA P TLACRH+HIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MLSRLRIVAVPSTLACRHIHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFH+NVKK+NGPLEKYIYIMGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHKNVKKMNGPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK
Sbjct: 181 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 240
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
AITDRYG+N LIQFEDFGNHN FRFLRK RE F
Sbjct: 241 AITDRYGQNTLIQFEDFGNHNAFRFLRKYREKYCTF 276
Score = 24.3 bits (51), Expect(2) = e-154
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 1100 GKSISEHKILF 1132
GKS SEHKILF
Sbjct: 299 GKSFSEHKILF 309
>ref|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 1 [Canis
familiaris].
Length = 499
Score = 380 bits (976), Expect(2) = e-106
Identities = 182/191 (95%), Positives = 184/191 (96%)
Frame = +1
Query: 463 MGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRS 642
MGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRS
Sbjct: 1 MGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRS 60
Query: 643 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDV 822
IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDV
Sbjct: 61 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDV 120
Query: 823 GTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRF 1002
GTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYG+N LIQFEDFGNHN FRF
Sbjct: 121 GTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGQNTLIQFEDFGNHNAFRF 180
Query: 1003 LRKIRENIVPF 1035
LRK RE F
Sbjct: 181 LRKYREKYCTF 191
Score = 24.3 bits (51), Expect(2) = e-106
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 1100 GKSISEHKILF 1132
GKS SEHKILF
Sbjct: 214 GKSFSEHKILF 224
>ref|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 2 [Canis familiaris].
Length = 604
Score = 334 bits (856), Expect = 1e-91
Identities = 156/260 (60%), Positives = 198/260 (76%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC QYG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHLATMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQ 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 7 [Canis familiaris].
Length = 562
Score = 318 bits (814), Expect = 8e-87
Identities = 148/239 (61%), Positives = 185/239 (77%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
MAFTL+ER LG+ GL+PP +QD+Q LR R ++ L+KYI +M +Q+RNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
R+L D+E MPIVYTPTVGLAC QYG FRRP+GLFI+I D+GH+ +++++WPE+ +KA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
VVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P +CLPV +DVGT+N LL+DP
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFEDF N N FR L K R F
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMF 239
>ref|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 6 [Canis familiaris].
Length = 513
Score = 318 bits (814), Expect = 8e-87
Identities = 148/239 (61%), Positives = 185/239 (77%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
MAFTL+ER LG+ GL+PP +QD+Q LR R ++ L+KYI +M +Q+RNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
R+L D+E MPIVYTPTVGLAC QYG FRRP+GLFI+I D+GH+ +++++WPE+ +KA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
VVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P +CLPV +DVGT+N LL+DP
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFEDF N N FR L K R F
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMF 239
>ref|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 5 [Canis familiaris].
Length = 573
Score = 318 bits (814), Expect = 8e-87
Identities = 148/239 (61%), Positives = 185/239 (77%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
MAFTL+ER LG+ GL+PP +QD+Q LR R ++ L+KYI +M +Q+RNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
R+L D+E MPIVYTPTVGLAC QYG FRRP+GLFI+I D+GH+ +++++WPE+ +KA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
VVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P +CLPV +DVGT+N LL+DP
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFEDF N N FR L K R F
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMF 239
>ref|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 3 [Canis familiaris].
Length = 361
Score = 318 bits (814), Expect = 8e-87
Identities = 148/239 (61%), Positives = 185/239 (77%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
MAFTL+ER LG+ GL+PP +QD+Q LR R ++ L+KYI +M +Q+RNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
R+L D+E MPIVYTPTVGLAC QYG FRRP+GLFI+I D+GH+ +++++WPE+ +KA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
VVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P +CLPV +DVGT+N LL+DP
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFEDF N N FR L K R F
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMF 239
>ref|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) [Canis familiaris].
Length = 634
Score = 313 bits (802), Expect = 2e-85
Identities = 145/239 (60%), Positives = 181/239 (75%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
+AFTL+ERQ L + GLLPP +QDIQ LR +N ++L ++Y+ +M +Q+RNEKLFY
Sbjct: 90 LAFTLEERQQLNIHGLLPPCFISQDIQVLRIIKNFERLTSDFDRYLLLMDLQDRNEKLFY 149
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
+L D+E MPIVYTPTVGLAC QY FR+P+GLFISI DRGH+ S+++ WPE+ +KA
Sbjct: 150 SVLMSDLEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDRGHIASVLNAWPEDVIKA 209
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
+VVTDGERILGLGDLG GMGIPVGKL LYTAC G+ P CLPV +DVGT+N ALLKDP
Sbjct: 210 IVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEALLKDPL 269
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL Q+R R YDD +DEFM+A++ +YG N LIQFEDF N N FR L+K + F
Sbjct: 270 YIGLRQRRVRGPEYDDFLDEFMEAVSSKYGMNCLIQFEDFANINAFRLLKKYQNRYCTF 328
>ref|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 1 [Canis familiaris].
Length = 569
Score = 303 bits (776), Expect = 2e-82
Identities = 148/266 (55%), Positives = 185/266 (69%), Gaps = 27/266 (10%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
MAFTL+ER LG+ GL+PP +QD+Q LR R ++ L+KYI +M +Q+RNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPK-------------------------- 600
R+L D+E MPIVYTPTVGLAC QYG FRRP+
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRSAKEGLRGESHYGVDSLSSEGLSCSA 120
Query: 601 -GLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTAC 777
GLFI+I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC
Sbjct: 121 RGLFITIHDKGHLATMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTAC 180
Query: 778 AGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNI 957
G+ P +CLPV +DVGT+N LL+DP Y+GL +R R + YDDL+DEFM+A+TD++G N
Sbjct: 181 GGVSPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINC 240
Query: 958 LIQFEDFGNHNVFRFLRKIRENIVPF 1035
LIQFEDF N N FR L K R F
Sbjct: 241 LIQFEDFANANAFRLLNKYRNKYCMF 266
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,235,784
Number of extensions: 1086103
Number of successful extensions: 4359
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 11
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070282.1| NAD-dependent malic enzyme, mitochondrial [B... 550 e-157
Alignment gi|NP_001069345.1| NADP-dependent malic enzyme, mitochondrial [... 332 5e-91
Alignment gi|NP_001138325.1| NADP-dependent malic enzyme [Bos taurus]. 316 2e-86
>ref|NP_001070282.1| NAD-dependent malic enzyme, mitochondrial [Bos taurus].
Length = 584
Score = 550 bits (1417), Expect = e-157
Identities = 266/276 (96%), Positives = 268/276 (97%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
MLSRFKIVATPCTLACRHLH KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MLSRFKIVATPCTLACRHLHTKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFHRN+KKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHRNLKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK
Sbjct: 181 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 240
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
AITDRYG+N LIQFEDFGNHN FRFLRK RE F
Sbjct: 241 AITDRYGQNTLIQFEDFGNHNAFRFLRKYREKYCTF 276
>ref|NP_001069345.1| NADP-dependent malic enzyme, mitochondrial [Bos taurus].
Length = 604
Score = 332 bits (850), Expect = 5e-91
Identities = 154/260 (59%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRVMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E +PIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFLPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
+ D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 VHDKGHLATMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQEYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|NP_001138325.1| NADP-dependent malic enzyme [Bos taurus].
Length = 568
Score = 316 bits (810), Expect = 2e-86
Identities = 146/241 (60%), Positives = 184/241 (76%)
Frame = +1
Query: 313 KGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKL 492
+ +AFTL+ERQ L + GLLPP +QD+Q LR +N ++LN ++Y+ +M +Q+RNEKL
Sbjct: 23 RDLAFTLEERQQLNIHGLLPPSFISQDVQVLRVLKNFERLNSDFDRYLLLMDLQDRNEKL 82
Query: 493 FYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHV 672
FY++L DIE MPIVYTPTVGLAC QY FR+P+GLFISI DRGH+ S+++ WPE+ +
Sbjct: 83 FYKVLMSDIEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDRGHISSVLNAWPEDVI 142
Query: 673 KAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKD 852
KA+VVTDGERILGLGDLG GMGIPVGKL LYTAC G+ P +CLPV +DVGT+N LLKD
Sbjct: 143 KAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQQCLPVMLDVGTENEELLKD 202
Query: 853 PFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVP 1032
P Y+GL Q+R R YDD +DEFM+A++ +YG N LIQFEDF N N FR LRK +
Sbjct: 203 PLYIGLRQRRVRGPEYDDFLDEFMEAVSLKYGMNCLIQFEDFANINAFRLLRKYQNQYCT 262
Query: 1033 F 1035
F
Sbjct: 263 F 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,368,229
Number of extensions: 1045882
Number of successful extensions: 4488
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4469
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121491.2| PREDICTED: NAD-dependent malic enzyme, mitoc... 558 e-160
Alignment gi|XP_003129776.2| PREDICTED: LOW QUALITY PROTEIN: NADP-depende... 332 2e-91
Alignment gi|XP_001924368.2| PREDICTED: NADP-dependent malic enzyme [Sus ... 327 7e-90
>ref|XP_003121491.2| PREDICTED: NAD-dependent malic enzyme, mitochondrial [Sus scrofa].
Length = 502
Score = 558 bits (1439), Expect(2) = e-160
Identities = 271/277 (97%), Positives = 271/277 (97%)
Frame = +1
Query: 205 MMLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIE 384
MMLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIE
Sbjct: 1 MMLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIE 60
Query: 385 TQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLA 564
TQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLA
Sbjct: 61 TQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLA 120
Query: 565 CSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGI 744
CSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGI
Sbjct: 121 CSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGI 180
Query: 745 PVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFM 924
PVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFM
Sbjct: 181 PVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFM 240
Query: 925 KAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
KAITDRYGRNILIQFEDFGNHN FRFLRK RE F
Sbjct: 241 KAITDRYGRNILIQFEDFGNHNAFRFLRKYREKYCTF 277
Score = 25.8 bits (55), Expect(2) = e-160
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 1100 GKSISEHKILF 1132
GKSISEHKILF
Sbjct: 300 GKSISEHKILF 310
>ref|XP_003129776.2| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme,
mitochondrial [Sus scrofa].
Length = 613
Score = 332 bits (852), Expect = 2e-91
Identities = 156/260 (60%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|XP_001924368.2| PREDICTED: NADP-dependent malic enzyme [Sus scrofa].
Length = 571
Score = 327 bits (838), Expect = 7e-90
Identities = 155/262 (59%), Positives = 192/262 (73%)
Frame = +1
Query: 250 ACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKK 429
A R H ++G + P NK +AFTL+ERQ L + GLLPP +QDIQ LR +N ++
Sbjct: 5 APRRRHTLQRGYAVTRIPHLNKDLAFTLEERQQLNIHGLLPPCFISQDIQVLRVIKNFER 64
Query: 430 LNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLF 609
LN ++Y+ +M +Q+RNEKLFY++L DIE MPIVYTPTVGLAC QY FR+P+GLF
Sbjct: 65 LNSDFDRYLLLMDLQDRNEKLFYKVLMSDIEKFMPIVYTPTVGLACQQYSLAFRKPRGLF 124
Query: 610 ISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIR 789
ISI DRGHV S+++ WPE+ +KAVVVTDGERILGLGDLG GMGIPVGKL LYTAC G+
Sbjct: 125 ISIHDRGHVASVLNAWPEDVIKAVVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVN 184
Query: 790 PDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQF 969
P CLPV +DVGT+N LLKDP Y+GL Q+R R YDD +DEFM+A++ +YG N LIQF
Sbjct: 185 PQECLPVILDVGTENEELLKDPLYIGLRQRRVRGPEYDDFLDEFMEAVSSKYGMNCLIQF 244
Query: 970 EDFGNHNVFRFLRKIRENIVPF 1035
EDF N N FR L+K + F
Sbjct: 245 EDFANINAFRLLKKYQNQYCTF 266
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,932,611
Number of extensions: 668859
Number of successful extensions: 2928
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2917
Number of HSP's successfully gapped: 4
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663469.1| NAD-dependent malic enzyme, mitochondrial precu... 515 e-146
Alignment gi|XP_003086141.1| PREDICTED: NAD-dependent malic enzyme, mitoc... 451 e-127
Alignment gi|NP_852072.2| NADP-dependent malic enzyme, mitochondrial prec... 333 1e-91
Alignment gi|NP_032641.2| NADP-dependent malic enzyme isoform 1 [Mus musc... 321 6e-88
Alignment gi|NP_001185862.1| NADP-dependent malic enzyme isoform 2 [Mus m... 308 4e-84
>ref|NP_663469.1| NAD-dependent malic enzyme, mitochondrial precursor [Mus musculus].
Length = 589
Score = 515 bits (1327), Expect = e-146
Identities = 246/276 (89%), Positives = 258/276 (93%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
M SR + V TPCTL CR +H+KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MFSRLRAVTTPCTLTCRRVHLKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFHRN+KK+ PLEKYIYIMGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
QYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 CQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGI+P++CLPVCIDVGTDN ALLKDPFYMGLYQKRDRSQ YDDL+DEFMK
Sbjct: 181 VGKLCLYTACAGIQPEKCLPVCIDVGTDNMALLKDPFYMGLYQKRDRSQLYDDLMDEFMK 240
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
AITDRYGRN LIQFEDFGNHN FRFLRK ++ F
Sbjct: 241 AITDRYGRNTLIQFEDFGNHNAFRFLRKYQQKYCTF 276
>ref|XP_003086141.1| PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Mus
musculus].
Length = 563
Score = 451 bits (1161), Expect = e-127
Identities = 221/276 (80%), Positives = 233/276 (84%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
M SR + V TPCTL CR +H+KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MFSRLRAVTTPCTLTCRRVHLKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFHRN+KK+ PLEKYIYIMGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
QYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 CQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGI+P++CLPVCIDVGTDN ALLKDPFY+
Sbjct: 181 VGKLCLYTACAGIQPEKCLPVCIDVGTDNMALLKDPFYI--------------------- 219
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
YGRN LIQFEDFGNHN FRFLRK ++ F
Sbjct: 220 -----YGRNTLIQFEDFGNHNAFRFLRKYQQKYCTF 250
>ref|NP_852072.2| NADP-dependent malic enzyme, mitochondrial precursor [Mus musculus].
Length = 604
Score = 333 bits (855), Expect = 1e-91
Identities = 155/260 (59%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R +
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYENQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+++KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQ 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R R + YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|NP_032641.2| NADP-dependent malic enzyme isoform 1 [Mus musculus].
Length = 572
Score = 321 bits (823), Expect = 6e-88
Identities = 150/262 (57%), Positives = 190/262 (72%)
Frame = +1
Query: 250 ACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKK 429
A R H ++G L +P NK +AFTL+ERQ L + GLLPP I +Q++Q LR +N ++
Sbjct: 5 APRRRHTHQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFER 64
Query: 430 LNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLF 609
LN ++Y+ +M +Q+RNEKLFY +L D+E MPIVYTPTVGLAC QY FR+P+GLF
Sbjct: 65 LNSDFDRYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLF 124
Query: 610 ISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIR 789
ISI D+GH+ S+++ WPE+ VKA+VVTDGERILGLGDLG GMGIPVGKL LYTAC G+
Sbjct: 125 ISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVN 184
Query: 790 PDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQF 969
P +CLP+ +DVGT+N LLKDP Y+GL +R R YD +DEFM+A + +YG N LIQF
Sbjct: 185 PQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQF 244
Query: 970 EDFGNHNVFRFLRKIRENIVPF 1035
EDF N N FR L K R F
Sbjct: 245 EDFANRNAFRLLNKYRNKYCTF 266
>ref|NP_001185862.1| NADP-dependent malic enzyme isoform 2 [Mus musculus].
Length = 552
Score = 308 bits (790), Expect = 4e-84
Identities = 142/239 (59%), Positives = 179/239 (74%)
Frame = +1
Query: 319 MAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFY 498
+AFTL+ERQ L + GLLPP I +Q++Q LR +N ++LN ++Y+ +M +Q+RNEKLFY
Sbjct: 8 LAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFDRYLLLMDLQDRNEKLFY 67
Query: 499 RILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKA 678
+L D+E MPIVYTPTVGLAC QY FR+P+GLFISI D+GH+ S+++ WPE+ VKA
Sbjct: 68 SVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKA 127
Query: 679 VVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPF 858
+VVTDGERILGLGDLG GMGIPVGKL LYTAC G+ P +CLP+ +DVGT+N LLKDP
Sbjct: 128 IVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPL 187
Query: 859 YMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
Y+GL +R R YD +DEFM+A + +YG N LIQFEDF N N FR L K R F
Sbjct: 188 YIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLNKYRNKYCTF 246
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,408,631
Number of extensions: 902147
Number of successful extensions: 3406
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3387
Number of HSP's successfully gapped: 5
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002387.1| NAD-dependent malic enzyme, mitochondrial isofo... 532 e-151
Alignment gi|NP_001161807.1| NAD-dependent malic enzyme, mitochondrial is... 532 e-151
Alignment gi|NP_002386.1| NADP-dependent malic enzyme [Homo sapiens]. 332 5e-91
Alignment gi|NP_001155058.1| NADP-dependent malic enzyme, mitochondrial p... 331 9e-91
Alignment gi|NP_001014811.1| NADP-dependent malic enzyme, mitochondrial p... 331 9e-91
Alignment gi|NP_006671.2| NADP-dependent malic enzyme, mitochondrial prec... 331 9e-91
>ref|NP_002387.1| NAD-dependent malic enzyme, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 584
Score = 532 bits (1370), Expect = e-151
Identities = 256/276 (92%), Positives = 264/276 (95%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
MLSR ++V+T CTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MLSRLRVVSTTCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFHRN+KK+ PLEKYIYIMGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGIRPDRCLPVCIDVGTDN ALLKDPFYMGLYQKRDR+Q+YDDLIDEFMK
Sbjct: 181 VGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMK 240
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
AITDRYGRN LIQFEDFGNHN FRFLRK RE F
Sbjct: 241 AITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTF 276
>ref|NP_001161807.1| NAD-dependent malic enzyme, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 479
Score = 532 bits (1370), Expect = e-151
Identities = 256/276 (92%), Positives = 264/276 (95%)
Frame = +1
Query: 208 MLSRFKIVATPCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 387
MLSR ++V+T CTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET
Sbjct: 1 MLSRLRVVSTTCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIET 60
Query: 388 QDIQALRFHRNVKKLNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLAC 567
QDIQALRFHRN+KK+ PLEKYIYIMGIQERNEKLFYRILQDDIE+LMPIVYTPTVGLAC
Sbjct: 61 QDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLAC 120
Query: 568 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 747
SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP
Sbjct: 121 SQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIP 180
Query: 748 VGKLCLYTACAGIRPDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMK 927
VGKLCLYTACAGIRPDRCLPVCIDVGTDN ALLKDPFYMGLYQKRDR+Q+YDDLIDEFMK
Sbjct: 181 VGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMK 240
Query: 928 AITDRYGRNILIQFEDFGNHNVFRFLRKIRENIVPF 1035
AITDRYGRN LIQFEDFGNHN FRFLRK RE F
Sbjct: 241 AITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTF 276
>ref|NP_002386.1| NADP-dependent malic enzyme [Homo sapiens].
Length = 572
Score = 332 bits (850), Expect = 5e-91
Identities = 155/262 (59%), Positives = 192/262 (73%)
Frame = +1
Query: 250 ACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKK 429
A R H ++G L NP NK +AFTL+ERQ L + GLLPP +Q+IQ LR +N +
Sbjct: 5 APRRRHTHQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEH 64
Query: 430 LNGPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLF 609
LN ++Y+ +M +Q+RNEKLFYR+L DIE MPIVYTPTVGLAC QY +FR+P+GLF
Sbjct: 65 LNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLF 124
Query: 610 ISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIR 789
I+I DRGH+ S+++ WPE+ +KA+VVTDGERILGLGDLG GMGIPVGKL LYTAC G+
Sbjct: 125 ITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMN 184
Query: 790 PDRCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQF 969
P CLPV +DVGT+N LLKDP Y+GL Q+R R YDD +DEFM+A++ +YG N LIQF
Sbjct: 185 PQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQF 244
Query: 970 EDFGNHNVFRFLRKIRENIVPF 1035
EDF N N FR L K R F
Sbjct: 245 EDFANVNAFRLLNKYRNQYCTF 266
>ref|NP_001155058.1| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 331 bits (848), Expect = 9e-91
Identities = 154/260 (59%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+++KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQ 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R + YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|NP_001014811.1| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 331 bits (848), Expect = 9e-91
Identities = 154/260 (59%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+++KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQ 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R + YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
>ref|NP_006671.2| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 331 bits (848), Expect = 9e-91
Identities = 154/260 (59%), Positives = 197/260 (75%)
Frame = +1
Query: 256 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 435
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 42 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 101
Query: 436 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 615
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 102 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 161
Query: 616 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 795
I D+GH+ +++++WPE+++KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 162 IHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQ 221
Query: 796 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 975
+CLPV +DVGT+N LL+DP Y+GL +R + YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 222 QCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFED 281
Query: 976 FGNHNVFRFLRKIRENIVPF 1035
F N N FR L K R F
Sbjct: 282 FANANAFRLLNKYRNKYCMF 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,475,876
Number of extensions: 1063483
Number of successful extensions: 4357
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 6
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014556
(1133 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 377 e-102
>Sscrofa_Chr01
|| Length = 315321322
Score = 377 bits (190), Expect = e-102
Identities = 193/194 (99%)
Strand = Plus / Plus
Query: 4 actacgcgggtttactggtggcctccccggtatccagccgacccggccgggtggaccctt 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110333150 actacgcggatttactggtggcctccccggtatccagccgacccggccgggtggaccctt 110333209
Query: 64 agctggcgccggctccgggaagcctagagaaggggaggggcggactcagctggagctgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110333210 agctggcgccggctccgggaagcctagagaaggggaggggcggactcagctggagctgag 110333269
Query: 124 catcgtccgggtgggctgagaggccgtggcctctccgttcgaagcaccacctgtcgcggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110333270 catcgtccgggtgggctgagaggccgtggcctctccgttcgaagcaccacctgtcgcggg 110333329
Query: 184 gcgagacttgtggt 197
||||||||||||||
Sbjct: 110333330 gcgagacttgtggt 110333343
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 671 ttaaggctgttgtggtgactgatggagagagaattctgggtcttggagatctgggtgtct 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110359176 ttaaggctgttgtggtgactgatggagagagaattctgggtcttggagatctgggtgtct 110359235
Query: 731 atggaatgggaattccagtaggaaaactatgtttgtatacagcttgtgcaggaatacggc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110359236 atggaatgggaattccagtaggaaaactatgtttgtatacagcttgtgcaggaatacggc 110359295
Query: 791 ctgatagatgtctgcctgtgtgtattgatgtaggaaccgataatccag 838
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110359296 ctgatagatgtctgcctgtgtgtattgatgtaggaaccgataatccag 110359343
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 450 atacatctatataatgggaattcaagaaagaaatgagaagttgttttatagaatactgca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110355174 atacatctatataatgggaattcaagaaagaaatgagaagttgttttatagaatactgca 110355233
Query: 510 agatgatattgaaactctaatgccaattgtatatacaccaacagttggtcttgcctgttc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110355234 agatgatattgaaactctaatgccaattgtatatacaccaacagttggtcttgcctgttc 110355293
Query: 570 ccagtatggacacatctttagaagacccaag 600
|||||||||||||||||||||||||||||||
Sbjct: 110355294 ccagtatggacacatctttagaagacccaag 110355324
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 314 agggaatggcatttacattacaggaacgacaaatgctgggtcttcaaggacttctccctc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110351114 agggaatggcatttacattacaggaacgacaaatgctgggtcttcaaggacttctccctc 110351173
Query: 374 ccaaaatagagacacaagatattcaagctttacgattccatagaaacgtgaaaaagctga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110351174 ccaaaatagagacacaagatattcaagctttacgattccatagaaacgtgaaaaagctga 110351233
Query: 434 atggccctttggaaaa 449
||||||||||||||||
Sbjct: 110351234 atggccctttggaaaa 110351249
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 195 ggtgagagaaatgatgttgtccagatttaaaatagttgccactccttgtactctagcatg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110340581 ggtgagagaaatgatgttgtccagatttaaaatagttgccactccttgtactctagcatg 110340640
Query: 255 tcgtcatttgcacataaaagagaaaggcaagccacttatgttgaacccaagaacaaacaa 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110340641 tcgtcatttgcacataaaagagaaaggcaagccacttatgttgaacccaagaacaaacaa 110340700
Query: 315 gg 316
||
Sbjct: 110340701 gg 110340702
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 838 gcactcttaaaagacccattttacatgggcttatatcagaaaagagatcgatcacagcgt 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110359908 gcactcttaaaagacccattttacatgggcttatatcagaaaagagatcgatcacagcgt 110359967
Query: 898 tatgatgatctaattgatgaatttatgaaggccattactgacag 941
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110359968 tatgatgatctaattgatgaatttatgaaggccattactgacag 110360011
Score = 155 bits (78), Expect = 6e-35
Identities = 85/86 (98%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1049 agggacagctgcagtagctctagctggtctgcttgcagcccaaaaagtta-tggtaaatc 1107
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 110363315 agggacagctgcagtagctctagctggtctgcttgcagcccaaaaagttattggtaaatc 110363374
Query: 1108 catctcagaacacaaaatcttatttc 1133
||||||||||||||||||||||||||
Sbjct: 110363375 catctcagaacacaaaatcttatttc 110363400
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 600 gggattatttatttcaatctcagacagaggtcatgttagatcaattgtggataactggcc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110357459 gggattatttatttcaatctcagacagaggtcatgttagatcaattgtggataactggcc 110357518
Query: 660 agaaaatcatgttaagg 676
|||||||||||||||||
Sbjct: 110357519 agaaaatcatgttaagg 110357535
Score = 145 bits (73), Expect = 6e-32
Identities = 104/113 (92%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 940 agatatggacggaacatacttattcagtttgaagactttggaaatcataatgtattcagg 999
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 110363114 agatatggacggaacatacttattcagtttgaagactttggaaatcataatgcattcagg 110363173
Query: 1000 ttcttgagaaaaatacgag-aaaatattgtacccttcatgacaatattcaagg 1051
|||||||||||| |||| ||||||||||||| | ||||| ||||||||||
Sbjct: 110363174 ttcttgagaaaataccgagaaaaatattgtaccttcaatgacgatattcaagg 110363226
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,192,473
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 9
Length of query: 1133
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1112
Effective length of database: 2,808,413,156
Effective search space: 3122955429472
Effective search space used: 3122955429472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)