Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850709.1| PREDICTED: similar to serum response factor bin... 360 e-104
>ref|XP_850709.1| PREDICTED: similar to serum response factor binding protein 1
[Canis familiaris].
Length = 428
Score = 360 bits (923), Expect(2) = e-104
Identities = 186/225 (82%), Positives = 199/225 (88%)
Frame = +1
Query: 139 MVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRRAQRLLE 318
M +PGTLNLNNEVVKMRKE SVGRLKSKKGTEDALLKNQRRAQRLLE
Sbjct: 1 MAQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLE 60
Query: 319 EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 498
EIHAMKELKPDIVTKSALGDDINFEK+CKKPDSTATERA+ARLA+HPLLKKKIDVLKAAV
Sbjct: 61 EIHAMKELKPDIVTKSALGDDINFEKVCKKPDSTATERAVARLAMHPLLKKKIDVLKAAV 120
Query: 499 KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP 678
KAFKDARQNVVEVKSS+NASEENHSKDTLCSNDDASKLQHEGTIISE++EKEAKILAKKP
Sbjct: 121 KAFKDARQNVVEVKSSENASEENHSKDTLCSNDDASKLQHEGTIISEQKEKEAKILAKKP 180
Query: 679 INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP 813
+ NSKEK KME G A+DIPN+ SKPSE+ VPS+P+KT ADP
Sbjct: 181 V-NSKEKRTKMEQGPNAIDIPNTPSKPSERAGIVPSDPRKTPADP 224
Score = 38.5 bits (88), Expect(2) = e-104
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 900 EEKEYFDDSTEERFLQQSS 956
EEKEYFDDSTEERF +QSS
Sbjct: 254 EEKEYFDDSTEERFYKQSS 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,721,386
Number of extensions: 584641
Number of successful extensions: 2181
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014571
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098919.1| serum response factor-binding protein 1 [Bos... 352 e-102
>ref|NP_001098919.1| serum response factor-binding protein 1 [Bos taurus].
Length = 428
Score = 352 bits (904), Expect(2) = e-102
Identities = 184/225 (81%), Positives = 195/225 (86%)
Frame = +1
Query: 139 MVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRRAQRLLE 318
M EP TLNLNNEVVKMRKE SVGRLKSKKG EDALLKNQRRAQRLLE
Sbjct: 1 MAEPETLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGREDALLKNQRRAQRLLE 60
Query: 319 EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 498
EI AMKELKPD+VTKSALG+DINFEKICKKPDSTA ERAIARLAVHPLLKKKIDVLKAAV
Sbjct: 61 EIRAMKELKPDVVTKSALGEDINFEKICKKPDSTAAERAIARLAVHPLLKKKIDVLKAAV 120
Query: 499 KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP 678
K+FKDARQNVVEVKSS +ASEENHSKDTLCSNDDASKLQHEGTII E++EKEAKILAKKP
Sbjct: 121 KSFKDARQNVVEVKSSNSASEENHSKDTLCSNDDASKLQHEGTIIREQKEKEAKILAKKP 180
Query: 679 INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP 813
INNSKEKIAKM+HG +A+D+PNSLSKPS K S S QKT +DP
Sbjct: 181 INNSKEKIAKMDHGPKAMDVPNSLSKPSGKDSPASSASQKTPSDP 225
Score = 38.5 bits (88), Expect(2) = e-102
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 900 EEKEYFDDSTEERFLQQSS 956
EEKEYFDDSTEERF +QSS
Sbjct: 255 EEKEYFDDSTEERFYKQSS 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,376,707
Number of extensions: 561781
Number of successful extensions: 2041
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354299.1| PREDICTED: serum response factor-binding pro... 402 e-117
>ref|XP_003354299.1| PREDICTED: serum response factor-binding protein 1-like [Sus
scrofa].
Length = 428
Score = 402 bits (1032), Expect(2) = e-117
Identities = 210/225 (93%), Positives = 211/225 (93%)
Frame = +1
Query: 139 MVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRRAQRLLE 318
MV+PGTLNLNNEVVKMRKE SVGRLKSKKGTEDALLKNQRRAQRLLE
Sbjct: 1 MVQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLE 60
Query: 319 EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 498
EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV
Sbjct: 61 EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 120
Query: 499 KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP 678
KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP
Sbjct: 121 KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP 180
Query: 679 INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP 813
INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP
Sbjct: 181 INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP 225
Score = 38.5 bits (88), Expect(2) = e-117
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 900 EEKEYFDDSTEERFLQQSS 956
EEKEYFDDSTEERF +QSS
Sbjct: 255 EEKEYFDDSTEERFYKQSS 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,510,198
Number of extensions: 356007
Number of successful extensions: 1261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080316.3| serum response factor-binding protein 1 [Mus mu... 258 3e-74
Alignment gi|XP_917299.4| PREDICTED: serum response factor-binding protei... 140 1e-33
>ref|NP_080316.3| serum response factor-binding protein 1 [Mus musculus].
Length = 441
Score = 258 bits (660), Expect(2) = 3e-74
Identities = 144/230 (62%), Positives = 164/230 (71%), Gaps = 1/230 (0%)
Frame = +1
Query: 121 PPLRATMVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRR 300
PP + MV+PGTLNLNNEVVKMRKE SVGRLKSKKGTEDALLKNQRR
Sbjct: 7 PP--SAMVQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRR 64
Query: 301 AQRLLEEIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKID 480
AQRLLEEIHAMKELKPD+VTKSAL DDINFEK CKKPDSTAT+RA+ARLA HPLLKKKID
Sbjct: 65 AQRLLEEIHAMKELKPDVVTKSALSDDINFEKTCKKPDSTATDRAVARLAGHPLLKKKID 124
Query: 481 VLKAAVKAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQH-EGTIISEREEKEA 657
VLK AV+AFKDARQ+ +SS++ S E KD S DDA + QH E T++ E++ K+
Sbjct: 125 VLKDAVQAFKDARQSAPAAESSESTSGEGRCKDIARSKDDARESQHPERTVVREQKAKDT 184
Query: 658 KILAKKPINNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSA 807
AK + SKEK+AK E RA P S +PS K + V SE Q A
Sbjct: 185 NTAAKNAASGSKEKLAKTEQAPRAGTTPGSQGRPSGKGAGVNSEHQGAPA 234
Score = 39.3 bits (90), Expect(2) = 3e-74
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 789 TPED-IC*PQSENIKSNQKEERVR*LTW**Q*WRRIT*EEKEYFDDSTEERFLQQSS 956
TPED +C P + + ++ E EKEYFDDSTEERF +QSS
Sbjct: 247 TPEDSVCEPANNGVSEEEESEG-----------------EKEYFDDSTEERFYKQSS 286
>ref|XP_917299.4| PREDICTED: serum response factor-binding protein 1-like [Mus
musculus].
Length = 103
Score = 140 bits (353), Expect = 1e-33
Identities = 74/96 (77%), Positives = 77/96 (80%)
Frame = +1
Query: 121 PPLRATMVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRR 300
PP + MV+PGTLNLNNEVVKMRKE SVGRLKSKKGTEDALLKNQRR
Sbjct: 7 PP--SAMVQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRR 64
Query: 301 AQRLLEEIHAMKELKPDIVTKSALGDDINFEKICKK 408
AQRLLEEIHAMKELKPD+VTKSAL DDINFEK CKK
Sbjct: 65 AQRLLEEIHAMKELKPDVVTKSALSDDINFEKTCKK 100
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,261,102
Number of extensions: 501174
Number of successful extensions: 1735
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1730
Number of HSP's successfully gapped: 3
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689759.2| serum response factor-binding protein 1 [Homo s... 334 1e-96
>ref|NP_689759.2| serum response factor-binding protein 1 [Homo sapiens].
Length = 429
Score = 334 bits (856), Expect(2) = 1e-96
Identities = 178/225 (79%), Positives = 191/225 (84%)
Frame = +1
Query: 139 MVEPGTLNLNNEVVKMRKEXXXXXXXXXXXXXXSVGRLKSKKGTEDALLKNQRRAQRLLE 318
M +PGTLNLNNEVVKMRKE SVGRLKSKKGTEDALLKNQRRAQRLLE
Sbjct: 1 MAQPGTLNLNNEVVKMRKEVKRIRVLVIRKLVRSVGRLKSKKGTEDALLKNQRRAQRLLE 60
Query: 319 EIHAMKELKPDIVTKSALGDDINFEKICKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 498
EIHAMKELKPDIVTKSALGDDINFEKI KKPDSTATERAIARLAVHPLLKKKIDVLKAAV
Sbjct: 61 EIHAMKELKPDIVTKSALGDDINFEKIFKKPDSTATERAIARLAVHPLLKKKIDVLKAAV 120
Query: 499 KAFKDARQNVVEVKSSKNASEENHSKDTLCSNDDASKLQHEGTIISEREEKEAKILAKKP 678
+AFK+ARQNV EV+SSKNASE+NHS++TL SND+ S LQ E T+ISE++ KE KILAKKP
Sbjct: 121 QAFKEARQNVAEVESSKNASEDNHSENTLYSNDNGSNLQREATVISEQKVKETKILAKKP 180
Query: 679 INNSKEKIAKMEHGSRAVDIPNSLSKPSEKVSTVPSEPQKTSADP 813
I+NSKEKIAKMEHG +AV I NS SKPSEK S V E QKT ADP
Sbjct: 181 IHNSKEKIAKMEHGPKAVTIANSPSKPSEKDSVVSLESQKTPADP 225
Score = 38.5 bits (88), Expect(2) = 1e-96
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 900 EEKEYFDDSTEERFLQQSS 956
EEKEYFDDSTEERF +QSS
Sbjct: 256 EEKEYFDDSTEERFYKQSS 274
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,334,653
Number of extensions: 584731
Number of successful extensions: 2150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2145
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014571
(956 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 444 e-122
>Sscrofa_Chr02
|| Length = 162569375
Score = 444 bits (224), Expect = e-122
Identities = 243/248 (97%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 710 tggaacatggatccagagcagtggacattccaaattctctgtcaaagccttctgagaagg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130855104 tggaacatggatccagagcagtggacattccaaattctctgtcaaagccttctgagaagg 130855163
Query: 770 tttctacagttccctctgaaccccagaagacatctgctgaccccaaagtgaaaacattaa 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130855164 tttctacagttccctctgaaccccagaagacatctgctgaccccaaagtgaaaacattaa 130855223
Query: 830 gtcaaaccaaaaagaagaaagagtccggtagctcacctggtagtaacagtgatggagaag 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130855224 gtcaaaccaaaaagaagaaagagtccggtagctcacctggtagtaacagtgatggagaag 130855283
Query: 890 aataacatg-agaagagaaggagtattttgatgatagcacagaagaaaggtttttacagc 948
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 130855284 aattacatgaagaagagaaggagtattttgatgatagcacagaagaaaggttttacaagc 130855343
Query: 949 agtcttcc 956
||||||||
Sbjct: 130855344 agtcttcc 130855351
Score = 317 bits (160), Expect = 6e-84
Identities = 172/176 (97%)
Strand = Plus / Plus
Query: 1 ctgcgcgtgcgtcggctcgagtgaaaggtggatgaattttgagccaatgaggccgccgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130800498 ctgcgcgtgcgtcggctcgagtgaaaggtggatgaattttgagccaatgaggccgccgtt 130800557
Query: 61 gaggggtttggcgacgcagccgcgttcgagtggatacagttcacgtgcgggcagctcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130800558 gaggggtttggcgacgcagccgcgttcgagtggatacagttcacgtgcgggcagctcgag 130800617
Query: 121 cctcctctcagagctactatggttgagccggggactttgaacctcaataacgaggt 176
||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 130800618 cctcctctcggagctactatggtccagccagggactttgaacctcaataacgaggt 130800673
Score = 303 bits (153), Expect = 9e-80
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 489 agctgctgtcaaagcctttaaagatgcaagacaaaatgttgttgaagttaagtcatcaaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130854883 agctgctgtcaaagcctttaaagatgcaagacaaaatgttgttgaagttaagtcatcaaa 130854942
Query: 549 gaatgcttcagaagaaaatcattccaaggacactttgtgttcaaatgatgatgccagtaa 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130854943 gaatgcttcagaagaaaatcattccaaggacactttgtgttcaaatgatgatgccagtaa 130855002
Query: 609 gttacagcatgaaggaactattattagtgagcg 641
|||||||||||||||||||||||||||||||||
Sbjct: 130855003 gttacagcatgaaggaactattattagtgagcg 130855035
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 173 aggttgtgaagatgagaaaagaagtgaagagaatccgagttttggttattcgaaaacttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130812130 aggttgtgaagatgagaaaagaagtgaagagaatccgagttttggttattcgaaaacttg 130812189
Query: 233 tgaggagtgttggcagattgaagtcaaaaaag 264
||||||||||||||||||||||||||||||||
Sbjct: 130812190 tgaggagtgttggcagattgaagtcaaaaaag 130812221
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 264 gggcaccgaagatgcactgttaaaaaaccaaagacgagcacaacggctgctcgaagaaat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130813510 gggcaccgaagatgcactgttaaaaaaccaaagacgagcacaacggctgctcgaagaaat 130813569
Query: 324 ccatgccatgaagg 337
||||||||||||||
Sbjct: 130813570 ccatgccatgaagg 130813583
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 335 aggagttgaaacctgatatagtaactaaatctgcccttggtgatgatatcaactttgaaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130837264 aggagttgaaacctgatatagtaactaaatctgcccttggtgatgatatcaactttgaaa 130837323
Query: 395 aaatctgcaaaaag 408
||||||||||||||
Sbjct: 130837324 aaatctgcaaaaag 130837337
Score = 125 bits (63), Expect = 5e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 407 agcctgattctaccgcaactgaaagagcaattgccagactagcagttcatcctcttctga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130853783 agcctgattctaccgcaactgaaagagcaattgccagactagcagttcatcctcttctga 130853842
Query: 467 agnnnnnnnttgatgtgctaaaag 490
|| |||||||||||||||
Sbjct: 130853843 agaaaaaaattgatgtgctaaaag 130853866
Score = 75.8 bits (38), Expect = 4e-11
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 538 aagtcatcaaagaatgcttcagaagaaaatcattccaaggacactttgtgttcaaatgat 597
||||||| |||||||| ||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct: 130188341 aagtcattaaagaatgtttcagaagaaaatcattccaaggtccctttgtgtttaaattat 130188400
Query: 598 ga 599
||
Sbjct: 130188401 ga 130188402
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,872,665
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 8
Length of query: 956
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 935
Effective length of database: 2,808,413,156
Effective search space: 2625866300860
Effective search space used: 2625866300860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)