Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030502.1| family with sequence similarity 65, member B... 353 9e-98
Alignment gi|XP_002694946.1| PREDICTED: hypothetical protein [Bos taurus]. 178 7e-45
Alignment gi|XP_876533.3| PREDICTED: hypothetical protein [Bos taurus]. 178 7e-45
Alignment gi|XP_002692547.1| PREDICTED: hypothetical protein [Bos taurus]. 155 5e-38
Alignment gi|XP_594815.3| PREDICTED: hypothetical protein [Bos taurus]. 155 5e-38
>ref|NP_001030502.1| family with sequence similarity 65, member B [Bos taurus].
Length = 1016
Score = 353 bits (907), Expect = 9e-98
Identities = 176/191 (92%), Positives = 184/191 (96%)
Frame = +1
Query: 370 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 549
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSA+KKPQAKLKKMHNLGH
Sbjct: 1 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSAVKKPQAKLKKMHNLGH 60
Query: 550 KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK 729
KN+SPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLT QLKDMRRNSRLGVLYDLDK
Sbjct: 61 KNSSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTTQLKDMRRNSRLGVLYDLDK 120
Query: 730 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDH 909
QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESL+E +
Sbjct: 121 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLAEIN 180
Query: 910 RSYRSTRRHVC 942
RSY+ ++C
Sbjct: 181 RSYKEYTENMC 191
>ref|XP_002694946.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 434
Score = 178 bits (451), Expect = 7e-45
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Frame = +1
Query: 415 IIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKR 588
+ RSQSFAG G QER R +KP A ++ KM ++ H PK PQP+R
Sbjct: 17 VSRSQSFAGVLGSQERGPRSFPAFSPPGPPRKPPALSRVSKMFSVAHP---APKVPQPER 73
Query: 589 VEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLE 768
++ VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLE
Sbjct: 74 LDLVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLE 133
Query: 769 FHISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
FH SK+DELYE+YC+QRRL+DGA M A++T SP SR AR+SL+E R +R +C
Sbjct: 134 FHASKIDELYESYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC 192
>ref|XP_876533.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 1229
Score = 178 bits (451), Expect = 7e-45
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Frame = +1
Query: 415 IIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKR 588
+ RSQSFAG G QER R +KP A ++ KM ++ H PK PQP+R
Sbjct: 31 VSRSQSFAGVLGSQERGPRSFPAFSPPGPPRKPPALSRVSKMFSVAHP---APKVPQPER 87
Query: 589 VEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLE 768
++ VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLE
Sbjct: 88 LDLVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLE 147
Query: 769 FHISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
FH SK+DELYE+YC+QRRL+DGA M A++T SP SR AR+SL+E R +R +C
Sbjct: 148 FHASKIDELYESYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC 206
>ref|XP_002692547.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 947
Score = 155 bits (392), Expect = 5e-38
Identities = 89/179 (49%), Positives = 113/179 (63%), Gaps = 4/179 (2%)
Frame = +1
Query: 391 FSPGGPNGII----RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNN 558
F G G + RS SFAGFS Q RR S NS + P K L +
Sbjct: 7 FLSSGDTGTVGVMGRSASFAGFSSAQSRRI-AKSVHRNSVRSRMPAKSSKTYGTL--RKG 63
Query: 559 SPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIK 738
+P+P++V++++ ALK GL E+L Q ELD LT + KD RRNSRL YDLDKQ +
Sbjct: 64 CVCSDPKPQQVKKIFEALKRGLKEHLCAQQAELDYLTGRHKDTRRNSRLAFYYDLDKQTR 123
Query: 739 TIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDHRS 915
++ER++R++EFHISKVDELYE YCIQ RL+DGAS M+ AF+ P SRA+RESL E RS
Sbjct: 124 SVERHIRKMEFHISKVDELYEGYCIQCRLRDGASSMQRAFSRRPPSRASRESLQELGRS 182
>ref|XP_594815.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 947
Score = 155 bits (392), Expect = 5e-38
Identities = 89/179 (49%), Positives = 113/179 (63%), Gaps = 4/179 (2%)
Frame = +1
Query: 391 FSPGGPNGII----RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNN 558
F G G + RS SFAGFS Q RR S NS + P K L +
Sbjct: 7 FLSSGDTGTVGVMGRSASFAGFSSAQSRRI-AKSVHRNSVRSRMPAKSSKTYGTL--RKG 63
Query: 559 SPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIK 738
+P+P++V++++ ALK GL E+L Q ELD LT + KD RRNSRL YDLDKQ +
Sbjct: 64 CVCSDPKPQQVKKIFEALKRGLKEHLCAQQAELDYLTGRHKDTRRNSRLAFYYDLDKQTR 123
Query: 739 TIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDHRS 915
++ER++R++EFHISKVDELYE YCIQ RL+DGAS M+ AF+ P SRA+RESL E RS
Sbjct: 124 SVERHIRKMEFHISKVDELYEGYCIQCRLRDGASSMQRAFSRRPPSRASRESLQELGRS 182
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,063,994
Number of extensions: 919273
Number of successful extensions: 3604
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3595
Number of HSP's successfully gapped: 5
Length of query: 314
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,306,398
Effective search space: 3032956376
Effective search space used: 3032956376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014590
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545369.2| PREDICTED: similar to C27H2.3 [Canis familiaris]. 351 5e-97
Alignment gi|XP_546877.2| PREDICTED: similar to C27H2.3 [Canis familiaris]. 165 7e-41
Alignment gi|XP_543049.2| PREDICTED: similar to C27H2.3 [Canis familiaris]. 160 2e-39
>ref|XP_545369.2| PREDICTED: similar to C27H2.3 [Canis familiaris].
Length = 1114
Score = 351 bits (901), Expect = 5e-97
Identities = 178/194 (91%), Positives = 182/194 (93%)
Frame = +1
Query: 361 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHN 540
PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIEN SALKKPQAKLKKMHN
Sbjct: 46 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENPSALKKPQAKLKKMHN 105
Query: 541 LGHKNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 720
LGHK+NS PKEPQP+RVEEV RALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD
Sbjct: 106 LGHKSNSLPKEPQPQRVEEVIRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 165
Query: 721 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLS 900
LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFA SP SRAARESLS
Sbjct: 166 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFAASPTSRAARESLS 225
Query: 901 EDHRSYRSTRRHVC 942
E RSYR ++C
Sbjct: 226 EISRSYREYTENMC 239
>ref|XP_546877.2| PREDICTED: similar to C27H2.3 [Canis familiaris].
Length = 1228
Score = 165 bits (417), Expect = 7e-41
Identities = 90/175 (51%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 421 RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNNSPPKEPQPKRVEEV 600
RSQSFAG G ER R S + + PK PQP+R++ V
Sbjct: 33 RSQSFAGVLGSHERGPRMFSVVYPA-----------------------PKVPQPERLDLV 69
Query: 601 YRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLEFHIS 780
Y ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLEFH S
Sbjct: 70 YTALKQGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLEFHAS 129
Query: 781 KVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
K+DELYEAYC+QRRL+DGA M A++T SP SR AR+SL+E R +R +C
Sbjct: 130 KIDELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC 184
>ref|XP_543049.2| PREDICTED: similar to C27H2.3 [Canis familiaris].
Length = 593
Score = 160 bits (404), Expect = 2e-39
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 1/172 (0%)
Frame = +1
Query: 403 GPNGII-RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNNSPPKEPQ 579
G G++ RS SFAGFS Q RR + I +SA + AK + + K + P P+
Sbjct: 14 GAVGVVGRSASFAGFSSAQSRRIAKS--IHGNSARSRMPAKPSRTYGTLRKGSVCPA-PK 70
Query: 580 PKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMR 759
P++V++++ ALK GL EYL + Q ELD L+ + KD RRNSRL YDLDKQ +++ER++R
Sbjct: 71 PQQVKKIFEALKRGLKEYLCIQQAELDYLSGRHKDTRRNSRLAFYYDLDKQTRSVERHIR 130
Query: 760 RLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDHRS 915
++EFHISKVDELYE YCIQ RL+DGAS M+ AF+ P SRA+RESL E RS
Sbjct: 131 KMEFHISKVDELYEGYCIQCRLRDGASNMQRAFSACPPSRASRESLQELGRS 182
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,503,028
Number of extensions: 936092
Number of successful extensions: 3599
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3594
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 211
Effective length of database: 15,440,896
Effective search space: 3258029056
Effective search space used: 3258029056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928641.3| PREDICTED: protein FAM65B [Sus scrofa]. 363 e-100
Alignment gi|XP_003126978.1| PREDICTED: protein FAM65A-like [Sus scrofa]. 181 7e-46
Alignment gi|XP_001929509.1| PREDICTED: protein FAM65C-like [Sus scrofa]. 158 4e-39
>ref|XP_001928641.3| PREDICTED: protein FAM65B [Sus scrofa].
Length = 1063
Score = 363 bits (931), Expect = e-100
Identities = 182/191 (95%), Positives = 186/191 (97%)
Frame = +1
Query: 370 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 549
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH
Sbjct: 1 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 60
Query: 550 KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK 729
KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK
Sbjct: 61 KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK 120
Query: 730 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDH 909
QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSE +
Sbjct: 121 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEIN 180
Query: 910 RSYRSTRRHVC 942
RSY+ ++C
Sbjct: 181 RSYKEYTENMC 191
>ref|XP_003126978.1| PREDICTED: protein FAM65A-like [Sus scrofa].
Length = 1218
Score = 181 bits (458), Expect = 7e-46
Identities = 97/179 (54%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Frame = +1
Query: 415 IIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKR 588
+ RSQSFAG G QER R +KP A ++ KM ++ H PK PQP+R
Sbjct: 31 VSRSQSFAGVLGSQERGPRSFPAFSPPGPSRKPPALSRVSKMFSVAHP---APKVPQPER 87
Query: 589 VEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLE 768
++ VY ALK GL YLEVHQ E +KL Q+K+ +RNSRLG LYDLDKQ+K+IER++RRLE
Sbjct: 88 LDLVYTALKRGLTAYLEVHQQEQEKLQGQIKESKRNSRLGFLYDLDKQVKSIERFLRRLE 147
Query: 769 FHISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
FH SK+DELYEAYC+QRRL+DGA M A++T SP SR AR+SL+E R +R +C
Sbjct: 148 FHASKIDELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC 206
>ref|XP_001929509.1| PREDICTED: protein FAM65C-like [Sus scrofa].
Length = 947
Score = 158 bits (400), Expect = 4e-39
Identities = 91/177 (51%), Positives = 116/177 (65%), Gaps = 1/177 (0%)
Frame = +1
Query: 388 SFSPGGPNGII-RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNNSP 564
S G G++ RS SFAGFS Q RR S NS + P K LG S
Sbjct: 9 SSGDAGAVGVMGRSASFAGFSSAQSRRIT-KSTHRNSVRPRMPAKSSKMYGTLG--KGSV 65
Query: 565 PKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTI 744
+P+P++V++++ ALK GL EYL + Q ELD L+ + KD RRNSRL YDLDKQ +++
Sbjct: 66 CLDPKPQQVKKIFEALKRGLKEYLCIQQAELDYLSGRHKDTRRNSRLAFYYDLDKQTRSV 125
Query: 745 ERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDHRS 915
ER++R++EFHISKVDELYE YCIQ RL+DGAS M+ AF+ P SRA+RESL E RS
Sbjct: 126 ERHIRKMEFHISKVDELYEGYCIQCRLRDGASNMQRAFSRCPPSRASRESLQELGRS 182
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,104,727
Number of extensions: 612676
Number of successful extensions: 2260
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2257
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 215
Effective length of database: 8,879,129
Effective search space: 1909012735
Effective search space used: 1909012735
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083955.1| family with sequence similarity 65, member B is... 357 7e-99
Alignment gi|NP_001073850.1| family with sequence similarity 65, member B... 357 7e-99
Alignment gi|NP_848773.3| family with sequence similarity 65, member B is... 357 7e-99
Alignment gi|NP_001074710.2| hypothetical protein LOC75687 [Mus musculus]. 176 2e-44
Alignment gi|NP_001074177.1| hypothetical protein LOC69553 [Mus musculus]. 149 2e-36
>ref|NP_083955.1| family with sequence similarity 65, member B isoform 1 [Mus
musculus].
Length = 1078
Score = 357 bits (916), Expect = 7e-99
Identities = 178/194 (91%), Positives = 186/194 (95%)
Frame = +1
Query: 361 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHN 540
PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIEN+SALKKPQAKLKKMHN
Sbjct: 23 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENASALKKPQAKLKKMHN 82
Query: 541 LGHKNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 720
LGHKNN+ PKEPQPKRVEEVYRALKNGLDEYLE HQTELDKLTAQLKDM+RNSRLGVLYD
Sbjct: 83 LGHKNNNTPKEPQPKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRLGVLYD 142
Query: 721 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLS 900
LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESLS
Sbjct: 143 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLS 202
Query: 901 EDHRSYRSTRRHVC 942
E +RSY+ ++C
Sbjct: 203 EINRSYKEYTENMC 216
>ref|NP_001073850.1| family with sequence similarity 65, member B isoform 2 [Mus
musculus].
Length = 672
Score = 357 bits (916), Expect = 7e-99
Identities = 178/194 (91%), Positives = 186/194 (95%)
Frame = +1
Query: 361 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHN 540
PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIEN+SALKKPQAKLKKMHN
Sbjct: 23 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENASALKKPQAKLKKMHN 82
Query: 541 LGHKNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 720
LGHKNN+ PKEPQPKRVEEVYRALKNGLDEYLE HQTELDKLTAQLKDM+RNSRLGVLYD
Sbjct: 83 LGHKNNNTPKEPQPKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRLGVLYD 142
Query: 721 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLS 900
LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESLS
Sbjct: 143 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLS 202
Query: 901 EDHRSYRSTRRHVC 942
E +RSY+ ++C
Sbjct: 203 EINRSYKEYTENMC 216
>ref|NP_848773.3| family with sequence similarity 65, member B isoform 3 [Mus
musculus].
Length = 633
Score = 357 bits (916), Expect = 7e-99
Identities = 178/194 (91%), Positives = 186/194 (95%)
Frame = +1
Query: 361 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHN 540
PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIEN+SALKKPQAKLKKMHN
Sbjct: 26 PEIMLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENASALKKPQAKLKKMHN 85
Query: 541 LGHKNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 720
LGHKNN+ PKEPQPKRVEEVYRALKNGLDEYLE HQTELDKLTAQLKDM+RNSRLGVLYD
Sbjct: 86 LGHKNNNTPKEPQPKRVEEVYRALKNGLDEYLEFHQTELDKLTAQLKDMKRNSRLGVLYD 145
Query: 721 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLS 900
LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESLS
Sbjct: 146 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLS 205
Query: 901 EDHRSYRSTRRHVC 942
E +RSY+ ++C
Sbjct: 206 EINRSYKEYTENMC 219
>ref|NP_001074710.2| hypothetical protein LOC75687 [Mus musculus].
Length = 1223
Score = 176 bits (447), Expect = 2e-44
Identities = 94/179 (52%), Positives = 123/179 (68%), Gaps = 3/179 (1%)
Frame = +1
Query: 415 IIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQ--AKLKKMHNLGHKNNSPPKEPQPKR 588
+ RSQSFAG G ER R + +KP +++ +M ++ H PK PQP+R
Sbjct: 17 VSRSQSFAGVLGSHERGPRSFTVFSPPGPPRKPLVLSRVSRMFSVAHP---APKVPQPER 73
Query: 589 VEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLE 768
++ VY ALK GL YLEVHQ E +KL Q+K+ +RNSRLG LYDLDKQ+K+IER++RRLE
Sbjct: 74 LDLVYTALKRGLTAYLEVHQQEQEKLQRQIKESKRNSRLGFLYDLDKQVKSIERFLRRLE 133
Query: 769 FHISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
FH SK+DELYEAYC+QRRL+DGA M A++T SP SR AR+SL+E R +R +C
Sbjct: 134 FHASKIDELYEAYCVQRRLRDGAYNMVRAYSTGSPGSREARDSLAEATRGHREYTESMC 192
>ref|NP_001074177.1| hypothetical protein LOC69553 [Mus musculus].
Length = 938
Score = 149 bits (377), Expect = 2e-36
Identities = 86/181 (47%), Positives = 115/181 (63%)
Frame = +1
Query: 400 GGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGHKNNSPPKEPQ 579
G + RS SFAGFS Q RR + I +S + AK K + K S +P+
Sbjct: 14 GAVGTVGRSASFAGFSSAQSRR--LSKSINRNSVRSRLPAKSSKAYRTLRKG-SLCLDPR 70
Query: 580 PKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMR 759
P++V++++ ALK GL E+L Q ELD L + D +R SRL YDLDKQ++ +ER++R
Sbjct: 71 PQQVKKIFDALKRGLREHLCEQQAELDYLCGRHTDTQRGSRLAFYYDLDKQLRLVERHIR 130
Query: 760 RLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDHRSYRSTRRHV 939
++EFHISKVDELYEAYCIQ RL+DGAS M+ AF+ S SRA+RESL E RS + +
Sbjct: 131 KVEFHISKVDELYEAYCIQWRLRDGASNMQRAFSNSTQSRASRESLQELGRSLQECLEDM 190
Query: 940 C 942
C
Sbjct: 191 C 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,487,568
Number of extensions: 769398
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 5
Length of query: 314
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 213
Effective length of database: 12,583,923
Effective search space: 2680375599
Effective search space used: 2680375599
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056948.2| family with sequence similarity 65, member B is... 354 6e-98
Alignment gi|NP_055537.2| family with sequence similarity 65, member B is... 354 6e-98
Alignment gi|NP_001180453.1| hypothetical protein LOC79567 isoform 4 [Hom... 172 3e-43
Alignment gi|NP_001180452.1| hypothetical protein LOC79567 isoform 3 [Hom... 172 3e-43
Alignment gi|NP_078795.2| hypothetical protein LOC79567 isoform 1 [Homo s... 172 3e-43
Alignment gi|NP_001180451.1| hypothetical protein LOC79567 isoform 2 [Hom... 167 2e-41
Alignment gi|NP_543019.2| hypothetical protein LOC140876 [Homo sapiens]. 165 6e-41
>ref|NP_056948.2| family with sequence similarity 65, member B isoform 2 [Homo
sapiens].
Length = 591
Score = 354 bits (909), Expect = 6e-98
Identities = 176/191 (92%), Positives = 185/191 (96%)
Frame = +1
Query: 370 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 549
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH
Sbjct: 1 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 60
Query: 550 KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK 729
KNN+PPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDM+RNSRLGVLYDLDK
Sbjct: 61 KNNNPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMKRNSRLGVLYDLDK 120
Query: 730 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDH 909
QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESL+E +
Sbjct: 121 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLTEIN 180
Query: 910 RSYRSTRRHVC 942
RS++ ++C
Sbjct: 181 RSFKEYTENMC 191
>ref|NP_055537.2| family with sequence similarity 65, member B isoform 1 [Homo
sapiens].
Length = 1068
Score = 354 bits (909), Expect = 6e-98
Identities = 176/191 (92%), Positives = 185/191 (96%)
Frame = +1
Query: 370 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 549
MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH
Sbjct: 1 MLVGSQSFSPGGPNGIIRSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHNLGH 60
Query: 550 KNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDK 729
KNN+PPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDM+RNSRLGVLYDLDK
Sbjct: 61 KNNNPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMKRNSRLGVLYDLDK 120
Query: 730 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLSEDH 909
QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMK AFATSPAS+AARESL+E +
Sbjct: 121 QIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKQAFATSPASKAARESLTEIN 180
Query: 910 RSYRSTRRHVC 942
RS++ ++C
Sbjct: 181 RSFKEYTENMC 191
>ref|NP_001180453.1| hypothetical protein LOC79567 isoform 4 [Homo sapiens].
Length = 1233
Score = 172 bits (437), Expect = 3e-43
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 3/177 (1%)
Frame = +1
Query: 421 RSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKRVE 594
RSQSFAG G ER R +KP A ++ +M ++ H K PQP+R++
Sbjct: 33 RSQSFAGVLGSHERGPRSFPVFSPPGPPRKPPALSRVSRMFSVAHP---AAKVPQPERLD 89
Query: 595 EVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLEFH 774
VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLEFH
Sbjct: 90 LVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLEFH 149
Query: 775 ISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
SK+DELYEAYC+QRRL+DGA M A+ T SP SR AR+SL+E R +R +C
Sbjct: 150 ASKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTESMC 206
>ref|NP_001180452.1| hypothetical protein LOC79567 isoform 3 [Homo sapiens].
Length = 1239
Score = 172 bits (437), Expect = 3e-43
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 3/177 (1%)
Frame = +1
Query: 421 RSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKRVE 594
RSQSFAG G ER R +KP A ++ +M ++ H K PQP+R++
Sbjct: 39 RSQSFAGVLGSHERGPRSFPVFSPPGPPRKPPALSRVSRMFSVAHP---AAKVPQPERLD 95
Query: 595 EVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLEFH 774
VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLEFH
Sbjct: 96 LVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLEFH 155
Query: 775 ISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
SK+DELYEAYC+QRRL+DGA M A+ T SP SR AR+SL+E R +R +C
Sbjct: 156 ASKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTESMC 212
>ref|NP_078795.2| hypothetical protein LOC79567 isoform 1 [Homo sapiens].
Length = 1219
Score = 172 bits (437), Expect = 3e-43
Identities = 93/177 (52%), Positives = 119/177 (67%), Gaps = 3/177 (1%)
Frame = +1
Query: 421 RSQSFAGFSGLQERRSRCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQPKRVE 594
RSQSFAG G ER R +KP A ++ +M ++ H K PQP+R++
Sbjct: 19 RSQSFAGVLGSHERGPRSFPVFSPPGPPRKPPALSRVSRMFSVAHP---AAKVPQPERLD 75
Query: 595 EVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRRLEFH 774
VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RRLEFH
Sbjct: 76 LVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLEFH 135
Query: 775 ISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHVC 942
SK+DELYEAYC+QRRL+DGA M A+ T SP SR AR+SL+E R +R +C
Sbjct: 136 ASKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTESMC 192
>ref|NP_001180451.1| hypothetical protein LOC79567 isoform 2 [Homo sapiens].
Length = 1223
Score = 167 bits (422), Expect = 2e-41
Identities = 93/181 (51%), Positives = 119/181 (65%), Gaps = 7/181 (3%)
Frame = +1
Query: 421 RSQSFAGFSGLQERRS----RCNSFIENSSALKKPQA--KLKKMHNLGHKNNSPPKEPQP 582
RSQSFAG G ER R +KP A ++ +M ++ H K PQP
Sbjct: 19 RSQSFAGVLGSHERGPSLSFRSFPVFSPPGPPRKPPALSRVSRMFSVAHP---AAKVPQP 75
Query: 583 KRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYDLDKQIKTIERYMRR 762
+R++ VY ALK GL YLEVHQ E +KL Q+++ +RNSRLG LYDLDKQ+K+IER++RR
Sbjct: 76 ERLDLVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRR 135
Query: 763 LEFHISKVDELYEAYCIQRRLQDGASKMKLAFAT-SPASRAARESLSEDHRSYRSTRRHV 939
LEFH SK+DELYEAYC+QRRL+DGA M A+ T SP SR AR+SL+E R +R +
Sbjct: 136 LEFHASKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTESM 195
Query: 940 C 942
C
Sbjct: 196 C 196
>ref|NP_543019.2| hypothetical protein LOC140876 [Homo sapiens].
Length = 946
Score = 165 bits (417), Expect = 6e-41
Identities = 98/185 (52%), Positives = 123/185 (66%), Gaps = 3/185 (1%)
Frame = +1
Query: 370 MLVGSQSFSPG--GPNGII-RSQSFAGFSGLQERRSRCNSFIENSSALKKPQAKLKKMHN 540
M V + SPG G G++ RS SFAGFS Q RR + I +S + AK KM+
Sbjct: 1 MSVRLRFLSPGDTGAVGVVGRSASFAGFSSAQSRRIAKS--INRNSVRSRMPAKSSKMYG 58
Query: 541 LGHKNNSPPKEPQPKRVEEVYRALKNGLDEYLEVHQTELDKLTAQLKDMRRNSRLGVLYD 720
K S +P+P++V++++ ALK GL EYL V Q ELD L+ + KD RRNSRL YD
Sbjct: 59 TLRKG-SVCADPKPQQVKKIFEALKRGLKEYLCVQQAELDHLSGRHKDTRRNSRLAFYYD 117
Query: 721 LDKQIKTIERYMRRLEFHISKVDELYEAYCIQRRLQDGASKMKLAFATSPASRAARESLS 900
LDKQ + +ER++R++EFHISKVDELYE YCIQ RL+DGAS M+ AFA P SRAARESL
Sbjct: 118 LDKQTRCVERHIRKMEFHISKVDELYEDYCIQCRLRDGASSMQRAFARCPPSRAARESLQ 177
Query: 901 EDHRS 915
E RS
Sbjct: 178 ELGRS 182
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,800,981
Number of extensions: 924462
Number of successful extensions: 3477
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3467
Number of HSP's successfully gapped: 7
Length of query: 314
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 212
Effective length of database: 14,934,836
Effective search space: 3166185232
Effective search space used: 3166185232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014590
(942 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 551 e-154
>Sscrofa_Chr07
|| Length = 134764511
Score = 551 bits (278), Expect = e-154
Identities = 322/344 (93%)
Strand = Plus / Minus
Query: 1 tgcataaaacatggcacaggaggccgggagaggctcggccgggcagcccagcgcagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990742 tgcataaaacatggcacaggaggccgggagaggctcggccgggcagcccagcgcagcagc 20990683
Query: 61 tgcctccaaggccattccggagttaagggaaggaaaggcaaggcaagttacaagataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990682 tgcctccaaggccattccggagttaagggaaggaaaggcaaggcaagttacaagataaaa 20990623
Query: 121 gaagtcgacggaagcctcggatataaaaaaggagaagagggcnnnnnnnnnnnnnnnnnn 180
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990622 gaagtcgacggaagcctcggatataaaaaaggagaagagggctttaaaaaaaattttttt 20990563
Query: 181 nnnncgtctggccttgacttcctgtctctctacgagcccttttgttccccctgccatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990562 tatacgtctggccttgacttcctgtctctctacgagcccttttgttccccctgccatgag 20990503
Query: 241 cagggattagaccctcatttggggaccatggtgttaccttcgcgattgcactggatcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990502 cagggattagaccctcatttggggaccatggtgttaccttcgcgattgcactggatcagg 20990443
Query: 301 aacaggccatggagggacaggatccggaggcggcagctcaaccg 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20990442 aacaggccatggagggacaggatccggaggcggcagctcaaccg 20990399
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 469 agatgtaactccttcattgaaaattcctccgctctcaagaagcctcaggccaaactgaag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20820638 agatgtaactccttcattgaaaattcctccgctctcaagaagcctcaggccaaactgaag 20820579
Query: 529 aaaatgcacaatttaggacataaaaacaacagccctcccaaagagcctcagcctaaaagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20820578 aaaatgcacaatttaggacataaaaacaacagccctcccaaagagcctcagcctaaaagg 20820519
Query: 589 gtggaagaggtctacagggctttgaaaaatggacttga 626
||||||||||||||||||||||||||||||||||||||
Sbjct: 20820518 gtggaagaggtctacagggctttgaaaaatggacttga 20820481
Score = 256 bits (129), Expect = 2e-65
Identities = 150/153 (98%), Gaps = 3/153 (1%)
Strand = Plus / Minus
Query: 782 aggtagatgaactctatgaagcttattgtatccaaagacgcctgcaggatggtgccagca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20813987 aggtagatgaactctatgaagcttattgtatccaaagacgcctgcaggatggtgccagca 20813928
Query: 842 aaatgaagctagcctttgccacctctcccgccagcagagctgcccgggagagcctgtcgg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20813927 aaatgaagctagcctttgccacctctcccgccagcagagctgcccgggagagcctgtcgg 20813868
Query: 902 aagatc-accggagttac-aggagtacacggag 932
||||| ||||||||||| ||||||||||||||
Sbjct: 20813867 -agatcaaccggagttacaaggagtacacggag 20813836
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 344 gactaccagccagactcccagaaatcatgttggtaggatcccagtccttctcgcctggag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20825507 gactaccagccagactcccagaaatcatgttggtaggatcccagtccttctcgcctggag 20825448
Query: 404 ggcccaatgggattatcagaagccagtccttcgcagggttcagcggccttcaggagaggc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20825447 ggcccaatgggattatcagaagccagtccttcgcagggttcagcggccttcaggagaggc 20825388
Query: 464 gatccag 470
|||||||
Sbjct: 20825387 gatccag 20825381
Score = 159 bits (80), Expect = 3e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 627 tgagtatctggaggttcatcagacggagctggacaagttgacagctcagttaaaagatat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20819756 tgagtatctggaggttcatcagacggagctggacaagttgacagctcagttaaaagatat 20819697
Query: 687 gagaagaaactctcgcctgg 706
||||||||||||||||||||
Sbjct: 20819696 gagaagaaactctcgcctgg 20819677
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 728 agcaaattaaaaccattgaaagatacatgagacgcctggagttccacattagtaaggta 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20816484 agcaaattaaaaccattgaaagatacatgagacgcctggagttccacattagtaaggta 20816426
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,661,108
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 7
Length of query: 942
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 921
Effective length of database: 2,808,413,156
Effective search space: 2586548516676
Effective search space used: 2586548516676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)