Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095788.1| nuclear prelamin A recognition factor [Bos t... 486 e-137
Alignment gi|NP_001076880.2| cytosolic Fe-S cluster assembly factor NARFL... 242 4e-64
>ref|NP_001095788.1| nuclear prelamin A recognition factor [Bos taurus].
Length = 275
Score = 486 bits (1251), Expect = e-137
Identities = 237/259 (91%), Positives = 249/259 (96%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQENASV+VPSPA E+GE KGEFHKLADAKIFLSDCLACDSC
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENASVDVPSPAQENGE-KGEFHKLADAKIFLSDCLACDSC 59
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
VSAEEG+QV+QQNAKDF +VLNLNKKCD SEH+VLAVS+CPQSLPYFAAKFSLSVTDASR
Sbjct: 60 VSAEEGIQVSQQNAKDFFQVLNLNKKCDTSEHKVLAVSLCPQSLPYFAAKFSLSVTDASR 119
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFD TIAADFSILESQKEFVRRF QH+EEEPALPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRFRQHNEEEPALPMLTSACPGWVRYA 179
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLGHPVTPHLCTA+SPQQIMGSLVKDYFARRQ+LS D+IFHVIVAPCYD+KLEALQED
Sbjct: 180 ERVLGHPVTPHLCTAKSPQQIMGSLVKDYFARRQNLSPDKIFHVIVAPCYDKKLEALQED 239
Query: 809 VPTASPGFRGTDCVLTSGE 865
V TAS G RGTDCVLTSGE
Sbjct: 240 VLTASRGSRGTDCVLTSGE 258
>ref|NP_001076880.2| cytosolic Fe-S cluster assembly factor NARFL [Bos taurus].
Length = 476
Score = 242 bits (617), Expect = 4e-64
Identities = 118/275 (42%), Positives = 173/275 (62%), Gaps = 4/275 (1%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESG----EEKGEFHKLADAKIFLSDCLACDSCVSAE 280
++C K K D + + V + + G KL AKI L DCLAC CV++
Sbjct: 22 QDCIKPMKVDRRPGSGVAKIHIEDDGSYFQVSQDGGMKKLEKAKISLDDCLACSGCVTSA 81
Query: 281 EGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCG 460
E V + QQ+ ++ +VL NK + +++ +SV PQS A +F L+ TD +R+L
Sbjct: 82 ETVLITQQSHEELRKVLGANKTAAPDQQKLVVISVSPQSRASLAVRFQLNPTDTARKLTA 141
Query: 461 FLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVL 640
F K +G HYVFD + +FS+LESQ+EFVRRF ++ E ALP+LTSACPGW+ YAE+
Sbjct: 142 FFKKIGAHYVFDTAFSRNFSLLESQREFVRRFRGQADPEQALPVLTSACPGWICYAEKTH 201
Query: 641 GHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTA 820
G + PH+ TARSPQQ+MGSLVKD+FA++Q L+ D+++H V PCYD+KLEA + D +
Sbjct: 202 GSTLLPHISTARSPQQVMGSLVKDFFAQQQHLTPDKVYHATVMPCYDKKLEASRPDFFSQ 261
Query: 821 SPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
R DCV+T+GE+ +++E+ +S+ + PL
Sbjct: 262 EHQTRDVDCVITTGEVFKLLEEGGVSLSELEPAPL 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,162,083
Number of extensions: 1225059
Number of successful extensions: 7108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6925
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,306,398
Effective search space: 3018649978
Effective search space used: 3018649978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014591
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537935.2| PREDICTED: similar to nuclear prelamin A recogn... 471 e-133
Alignment gi|XP_547207.2| PREDICTED: similar to nuclear prelamin A recogn... 243 1e-64
Alignment gi|XP_865327.1| PREDICTED: similar to nuclear prelamin A recogn... 153 3e-37
Alignment gi|XP_865343.1| PREDICTED: similar to nuclear prelamin A recogn... 110 2e-24
>ref|XP_537935.2| PREDICTED: similar to nuclear prelamin A recognition factor isoform
a [Canis familiaris].
Length = 473
Score = 471 bits (1212), Expect = e-133
Identities = 231/269 (85%), Positives = 251/269 (93%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSCVSAEEGVQ 292
+EC+KKTKT+DQENASV VPS A + EKGEFHKLADAKIFLSDCLACDSCV+AEEG+Q
Sbjct: 26 QECNKKTKTEDQENASVGVPSLAQDH-TEKGEFHKLADAKIFLSDCLACDSCVTAEEGLQ 84
Query: 293 VAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKS 472
V+QQN KDF RVLNLNKKCD S+H+VLAVSVCPQSLPYFAAKF LSVTDASRRLCGFLKS
Sbjct: 85 VSQQNVKDFFRVLNLNKKCDPSQHKVLAVSVCPQSLPYFAAKFRLSVTDASRRLCGFLKS 144
Query: 473 LGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPV 652
LGVHYVFD TIAADFSILESQKEFVRR+ QHSEEEPALPMLTSACPGWVRYAERVLGHPV
Sbjct: 145 LGVHYVFDTTIAADFSILESQKEFVRRYQQHSEEEPALPMLTSACPGWVRYAERVLGHPV 204
Query: 653 TPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGF 832
TPHLCTA+SPQQIMGSLVKDYFAR+Q+LS D+IFHVIVAPCYD+KLEAL+ED PTA GF
Sbjct: 205 TPHLCTAKSPQQIMGSLVKDYFARQQNLSPDKIFHVIVAPCYDKKLEALREDFPTAPHGF 264
Query: 833 RGTDCVLTSGEIAQMMEQSDLSVRDAALD 919
R DCVLTSGEIAQ+MEQSDL+V+DAA+D
Sbjct: 265 RSADCVLTSGEIAQIMEQSDLTVKDAAVD 293
>ref|XP_547207.2| PREDICTED: similar to nuclear prelamin A recognition factor-like
isoform 1 [Canis familiaris].
Length = 476
Score = 243 bits (621), Expect = 1e-64
Identities = 123/275 (44%), Positives = 175/275 (63%), Gaps = 4/275 (1%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESG----EEKGEFHKLADAKIFLSDCLACDSCVSAE 280
++C K K D + + V + G +L AKI L DCLAC CV++
Sbjct: 22 QDCIKPVKVDRRPGSGVAKIHIEDDGSYFQVSPDGGTQRLEKAKISLDDCLACSGCVTSA 81
Query: 281 EGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCG 460
E V + QQ+ ++ +VL+ NK + R++ VSV PQS AA+F LS TD +R+L
Sbjct: 82 ETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSPQSRASLAARFQLSPTDTARKLTA 141
Query: 461 FLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVL 640
F K +GVHYVFD + +FS+LESQ+EFV+RF + + ALP+LTSACPGW+ YAE+
Sbjct: 142 FFKKIGVHYVFDTAFSRNFSLLESQREFVQRFREQTNSTQALPVLTSACPGWICYAEKTH 201
Query: 641 GHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTA 820
G+ + P+L TARSPQQ+MGSLVKD+FA++Q L+ DRI+HV V PCYD+KLEA + D
Sbjct: 202 GNFLIPYLSTARSPQQVMGSLVKDFFAQQQHLTPDRIYHVTVMPCYDKKLEASRPDFFNQ 261
Query: 821 SPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
R DCV+T+GE+ +++E+ +S+ + PL
Sbjct: 262 EHQTRDVDCVVTTGEVFKLLEEEGVSLSELEPAPL 296
>ref|XP_865327.1| PREDICTED: similar to nuclear prelamin A recognition factor-like
isoform 2 [Canis familiaris].
Length = 283
Score = 153 bits (386), Expect = 3e-37
Identities = 91/254 (35%), Positives = 127/254 (50%), Gaps = 4/254 (1%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESG----EEKGEFHKLADAKIFLSDCLACDSCVSAE 280
++C K K D + + V + G +L AKI L DCLAC CV++
Sbjct: 22 QDCIKPVKVDRRPGSGVAKIHIEDDGSYFQVSPDGGTQRLEKAKISLDDCLACSGCVTSA 81
Query: 281 EGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCG 460
E V + QQ+ ++ +VL+ NK + R++ VSV PQS AA+F LS TD +R+L
Sbjct: 82 ETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSPQSRASLAARFQLSPTDTARKLTA 141
Query: 461 FLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVL 640
F K +G W+ YAE+
Sbjct: 142 FFKKIG---------------------------------------------WICYAEKTH 156
Query: 641 GHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTA 820
G+ + P+L TARSPQQ+MGSLVKD+FA++Q L+ DRI+HV V PCYD+KLEA + D
Sbjct: 157 GNFLIPYLSTARSPQQVMGSLVKDFFAQQQHLTPDRIYHVTVMPCYDKKLEASRPDFFNQ 216
Query: 821 SPGFRGTDCVLTSG 862
R DCV+T+G
Sbjct: 217 EHQTRDVDCVVTTG 230
>ref|XP_865343.1| PREDICTED: similar to nuclear prelamin A recognition factor-like
isoform 3 [Canis familiaris].
Length = 193
Score = 110 bits (274), Expect = 2e-24
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESG----EEKGEFHKLADAKIFLSDCLACDSCVSAE 280
++C K K D + + V + G +L AKI L DCLAC CV++
Sbjct: 22 QDCIKPVKVDRRPGSGVAKIHIEDDGSYFQVSPDGGTQRLEKAKISLDDCLACSGCVTSA 81
Query: 281 EGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCG 460
E V + QQ+ ++ +VL+ NK + R++ VSV PQS AA+F LS TD +R+L
Sbjct: 82 ETVLITQQSHEELRKVLDANKTAAPGQQRLVVVSVSPQSRASLAARFQLSPTDTARKLTA 141
Query: 461 FLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVL 640
F K + GW+ YAE+
Sbjct: 142 FFKKI---------------------------------------------GWICYAEKTH 156
Query: 641 GHPVTPHLCTARSPQQIMGSLVKDYFARRQ 730
G+ + P+L TARSPQQ+MGSLVKD+FA++Q
Sbjct: 157 GNFLIPYLSTARSPQQVMGSLVKDFFAQQQ 186
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,692,875
Number of extensions: 1256664
Number of successful extensions: 7728
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7558
Number of HSP's successfully gapped: 6
Length of query: 313
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 210
Effective length of database: 15,440,896
Effective search space: 3242588160
Effective search space used: 3242588160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131175.2| PREDICTED: nuclear prelamin A recognition fa... 557 e-159
Alignment gi|XP_003357967.1| PREDICTED: nuclear prelamin A recognition fa... 443 e-125
Alignment gi|XP_003357971.1| PREDICTED: nuclear prelamin A recognition fa... 390 e-109
Alignment gi|XP_003124717.2| PREDICTED: cytosolic Fe-S cluster assembly f... 241 5e-64
>ref|XP_003131175.2| PREDICTED: nuclear prelamin A recognition factor isoform 1 [Sus
scrofa].
Length = 455
Score = 557 bits (1435), Expect = e-159
Identities = 277/279 (99%), Positives = 277/279 (99%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEE GEFHKLADAKIFLSDCLACDSC
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEE-GEFHKLADAKIFLSDCLACDSC 59
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR
Sbjct: 60 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 119
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 179
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED
Sbjct: 180 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 239
Query: 809 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALD L
Sbjct: 240 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTL 278
>ref|XP_003357967.1| PREDICTED: nuclear prelamin A recognition factor isoform 2 [Sus
scrofa].
Length = 407
Score = 443 bits (1140), Expect = e-125
Identities = 229/279 (82%), Positives = 229/279 (82%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEE
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEE----------------------- 37
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
CDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR
Sbjct: 38 --------------------------CDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 71
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA
Sbjct: 72 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 131
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED
Sbjct: 132 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 191
Query: 809 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALD L
Sbjct: 192 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDTL 230
>ref|XP_003357971.1| PREDICTED: nuclear prelamin A recognition factor-like [Sus scrofa].
Length = 373
Score = 390 bits (1003), Expect = e-109
Identities = 193/194 (99%), Positives = 193/194 (99%)
Frame = +2
Query: 344 KCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSI 523
KCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSI
Sbjct: 3 KCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSI 62
Query: 524 LESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSL 703
LESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSL
Sbjct: 63 LESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSL 122
Query: 704 VKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMME 883
VKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMME
Sbjct: 123 VKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMME 182
Query: 884 QSDLSVRDAALDPL 925
QSDLSVRDAALD L
Sbjct: 183 QSDLSVRDAALDTL 196
>ref|XP_003124717.2| PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Sus
scrofa].
Length = 476
Score = 241 bits (614), Expect = 5e-64
Identities = 117/247 (47%), Positives = 166/247 (67%), Gaps = 3/247 (1%)
Frame = +2
Query: 203 GEFHKLADAKIFLSDCLACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVS 382
G KL AKI L DCLAC CV++ E V + QQ+ ++ +VL+ NK + R++ +S
Sbjct: 56 GGTRKLEKAKISLDDCLACSGCVTSAETVLITQQSHEELRKVLDANKTAAPGQQRLVVIS 115
Query: 383 VCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQ 562
V PQS A +F L+ TD +R+L F K +G HYVFD + +FS+LESQ+EFVRRF
Sbjct: 116 VSPQSQASLAVRFQLNPTDTARKLTAFFKRIGAHYVFDTAFSRNFSLLESQREFVRRFRG 175
Query: 563 HSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSA 742
+ + ALP+LTSACPGW+ YAE+ G + PH+ TARSPQQ+MG+LVKD+FA++Q L+
Sbjct: 176 QAGSQQALPVLTSACPGWICYAEKTHGRALLPHISTARSPQQVMGALVKDFFAQQQHLTP 235
Query: 743 DRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLS---VRDAA 913
D+I+HV V PC+D+KLEA + D + R DCV+T+GE+ +++E+ +S + AA
Sbjct: 236 DKIYHVAVMPCHDKKLEASRPDFFSQEHQTRDVDCVITTGEVLKLLEEEGVSLSALEPAA 295
Query: 914 LDPLLET 934
LD L T
Sbjct: 296 LDSLCST 302
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,288,769
Number of extensions: 793250
Number of successful extensions: 4780
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 214
Effective length of database: 8,879,129
Effective search space: 1900133606
Effective search space used: 1900133606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080548.3| nuclear prelamin A recognition factor [Mus musc... 466 e-131
Alignment gi|NP_080514.3| cytosolic Fe-S cluster assembly factor NARFL [M... 241 5e-64
>ref|NP_080548.3| nuclear prelamin A recognition factor [Mus musculus].
Length = 462
Score = 466 bits (1198), Expect = e-131
Identities = 229/285 (80%), Positives = 255/285 (89%), Gaps = 6/285 (2%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVP------SPAPESGEEKGEFHKLADAKIFLSDC 250
MKCEHCTRKECSKK+KTDDQEN S + SPA ES EEKGEFHKLADAKIFLSDC
Sbjct: 1 MKCEHCTRKECSKKSKTDDQENVSSDGAQPSDGASPAKES-EEKGEFHKLADAKIFLSDC 59
Query: 251 LACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLS 430
LACDSCV+ EEGVQ++QQ+AKDFL VLNLNK+CD S+HRVL VSVCPQSLPYFAAKF+LS
Sbjct: 60 LACDSCVTVEEGVQLSQQSAKDFLHVLNLNKRCDTSKHRVLVVSVCPQSLPYFAAKFNLS 119
Query: 431 VTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACP 610
VTDASRRLCGFLKSLGVHYVFD TIAADFSILESQKEFVRR+HQHSEE+ LPMLTSACP
Sbjct: 120 VTDASRRLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYHQHSEEQRELPMLTSACP 179
Query: 611 GWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKL 790
GWVRYAERVLG P+ P+LCTA+SPQQ+MGSLVKDYFAR+Q+LS ++IFHV+VAPCYD+KL
Sbjct: 180 GWVRYAERVLGRPIIPYLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVVVAPCYDKKL 239
Query: 791 EALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
EAL+E + T G RGTDCVLTSGEIAQ+MEQSDLSV+D A+D L
Sbjct: 240 EALREGLSTTLNGARGTDCVLTSGEIAQIMEQSDLSVKDIAVDTL 284
>ref|NP_080514.3| cytosolic Fe-S cluster assembly factor NARFL [Mus musculus].
Length = 476
Score = 241 bits (616), Expect = 5e-64
Identities = 115/243 (47%), Positives = 166/243 (68%)
Frame = +2
Query: 197 EKGEFHKLADAKIFLSDCLACDSCVSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLA 376
+ G KL AK+ L+DCLAC CV++ E V + QQ+ ++ +VL+ NK+ + R++
Sbjct: 54 QDGRTQKLEKAKVSLNDCLACSGCVTSAETVLITQQSHEELRKVLDANKEAAPGQQRLVV 113
Query: 377 VSVCPQSLPYFAAKFSLSVTDASRRLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRF 556
VS+ PQS AA+F L TD +R+L F K +GVH+VFD A +FS+LESQKEFV+RF
Sbjct: 114 VSISPQSRASLAARFRLDPTDTARKLTSFFKKIGVHFVFDTAFARNFSLLESQKEFVQRF 173
Query: 557 HQHSEEEPALPMLTSACPGWVRYAERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDL 736
+ + ALP+L SACPGW+ YAE+ G+ + P++ TARSPQQ+MGSLVKD+FA++Q L
Sbjct: 174 REQANSREALPVLASACPGWICYAEKTHGNFILPYISTARSPQQVMGSLVKDFFAQQQLL 233
Query: 737 SADRIFHVIVAPCYDRKLEALQEDVPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAAL 916
+ D+I+HV V PCYD+KLEA + D R DCVLT+GE+ +++E+ +S+ +
Sbjct: 234 TPDKIYHVTVMPCYDKKLEASRPDFFNQEYQTRDVDCVLTTGEVFRLLEEEGVSLTELEP 293
Query: 917 DPL 925
PL
Sbjct: 294 APL 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,560,405
Number of extensions: 1003465
Number of successful extensions: 5307
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5172
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 212
Effective length of database: 12,583,923
Effective search space: 2667791676
Effective search space used: 2667791676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036468.1| nuclear prelamin A recognition factor isoform a... 485 e-137
Alignment gi|NP_114174.1| nuclear prelamin A recognition factor isoform b... 463 e-130
Alignment gi|NP_001077077.1| nuclear prelamin A recognition factor isofor... 377 e-105
Alignment gi|NP_001033707.1| nuclear prelamin A recognition factor isofor... 375 e-104
Alignment gi|NP_071938.1| cytosolic Fe-S cluster assembly factor NARFL [H... 243 2e-64
>ref|NP_036468.1| nuclear prelamin A recognition factor isoform a [Homo sapiens].
Length = 456
Score = 485 bits (1248), Expect = e-137
Identities = 235/279 (84%), Positives = 256/279 (91%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQEN S + PSPA E+GE KGEFHKLADAKIFLSDCLACDSC
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGE-KGEFHKLADAKIFLSDCLACDSC 59
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
++AEEGVQ++QQNAKDF RVLNLNKKCD S+H+VL VSVCPQSLPYFAAKF+LSVTDASR
Sbjct: 60 MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 119
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFD TIAADFSILESQKEFVRR+ QHSEEE LPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 179
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLG P+T HLCTA+SPQQ+MGSLVKDYFAR+Q+LS ++IFHVIVAPCYD+KLEALQE
Sbjct: 180 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 239
Query: 809 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
+P A G RG DCVLTSGEIAQ+MEQ DLSVRDAA+D L
Sbjct: 240 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL 278
>ref|NP_114174.1| nuclear prelamin A recognition factor isoform b [Homo sapiens].
Length = 502
Score = 463 bits (1191), Expect = e-130
Identities = 235/325 (72%), Positives = 256/325 (78%), Gaps = 46/325 (14%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQEN S + PSPA E+GE KGEFHKLADAKIFLSDCLACDSC
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGE-KGEFHKLADAKIFLSDCLACDSC 59
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
++AEEGVQ++QQNAKDF RVLNLNKKCD S+H+VL VSVCPQSLPYFAAKF+LSVTDASR
Sbjct: 60 MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 119
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFD TIAADFSILESQKEFVRR+ QHSEEE LPMLTSACPGWVRYA
Sbjct: 120 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 179
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLG P+T HLCTA+SPQQ+MGSLVKDYFAR+Q+LS ++IFHVIVAPCYD+KLEALQE
Sbjct: 180 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 239
Query: 809 VPTASPGFRGTDCVLTS------------------------------------------- 859
+P A G RG DCVLTS
Sbjct: 240 LPPALHGSRGADCVLTSEISQAWWCTPVITATREAAARESLEPGRQRLQRDKIAPLDSSL 299
Query: 860 ---GEIAQMMEQSDLSVRDAALDPL 925
GEIAQ+MEQ DLSVRDAA+D L
Sbjct: 300 GGGGEIAQIMEQGDLSVRDAAVDTL 324
>ref|NP_001077077.1| nuclear prelamin A recognition factor isoform d [Homo sapiens].
Length = 408
Score = 377 bits (969), Expect = e-105
Identities = 192/279 (68%), Positives = 209/279 (74%)
Frame = +2
Query: 89 MKCEHCTRKECSKKTKTDDQENASVEVPSPAPESGEEKGEFHKLADAKIFLSDCLACDSC 268
MKCEHCTRKECSKKTKTDDQEN S + PSPA E+GE
Sbjct: 1 MKCEHCTRKECSKKTKTDDQENVSADAPSPAQENGE------------------------ 36
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
KCD S+H+VL VSVCPQSLPYFAAKF+LSVTDASR
Sbjct: 37 -------------------------KCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 71
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFD TIAADFSILESQKEFVRR+ QHSEEE LPMLTSACPGWVRYA
Sbjct: 72 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 131
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLG P+T HLCTA+SPQQ+MGSLVKDYFAR+Q+LS ++IFHVIVAPCYD+KLEALQE
Sbjct: 132 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 191
Query: 809 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
+P A G RG DCVLTSGEIAQ+MEQ DLSVRDAA+D L
Sbjct: 192 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL 230
>ref|NP_001033707.1| nuclear prelamin A recognition factor isoform c [Homo sapiens].
Length = 397
Score = 375 bits (962), Expect = e-104
Identities = 182/219 (83%), Positives = 201/219 (91%)
Frame = +2
Query: 269 VSAEEGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASR 448
++AEEGVQ++QQNAKDF RVLNLNKKCD S+H+VL VSVCPQSLPYFAAKF+LSVTDASR
Sbjct: 1 MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASR 60
Query: 449 RLCGFLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYA 628
RLCGFLKSLGVHYVFD TIAADFSILESQKEFVRR+ QHSEEE LPMLTSACPGWVRYA
Sbjct: 61 RLCGFLKSLGVHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYA 120
Query: 629 ERVLGHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQED 808
ERVLG P+T HLCTA+SPQQ+MGSLVKDYFAR+Q+LS ++IFHVIVAPCYD+KLEALQE
Sbjct: 121 ERVLGRPITAHLCTAKSPQQVMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQES 180
Query: 809 VPTASPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
+P A G RG DCVLTSGEIAQ+MEQ DLSVRDAA+D L
Sbjct: 181 LPPALHGSRGADCVLTSGEIAQIMEQGDLSVRDAAVDTL 219
>ref|NP_071938.1| cytosolic Fe-S cluster assembly factor NARFL [Homo sapiens].
Length = 476
Score = 243 bits (620), Expect = 2e-64
Identities = 121/275 (44%), Positives = 175/275 (63%), Gaps = 4/275 (1%)
Frame = +2
Query: 113 KECSKKTKTDDQENASVEVPSPAPESG----EEKGEFHKLADAKIFLSDCLACDSCVSAE 280
+EC K K + + + V + + G +L AK+ L+DCLAC C+++
Sbjct: 22 QECIKPVKVEKRAGSGVAKIRIEDDGSYFQINQDGGTRRLEKAKVSLNDCLACSGCITSA 81
Query: 281 EGVQVAQQNAKDFLRVLNLNKKCDASEHRVLAVSVCPQSLPYFAAKFSLSVTDASRRLCG 460
E V + QQ+ ++ +VL+ NK S+ R++ VSV PQS AA+F L+ TD +R+L
Sbjct: 82 ETVLITQQSHEELKKVLDANKMAAPSQQRLVVVSVSPQSRASLAARFQLNPTDTARKLTS 141
Query: 461 FLKSLGVHYVFDATIAADFSILESQKEFVRRFHQHSEEEPALPMLTSACPGWVRYAERVL 640
F K +GVH+VFD + FS+LESQ+EFVRRF ++ ALP+L SACPGW+ YAE+
Sbjct: 142 FFKKIGVHFVFDTAFSRHFSLLESQREFVRRFRGQADCRQALPLLASACPGWICYAEKTH 201
Query: 641 GHPVTPHLCTARSPQQIMGSLVKDYFARRQDLSADRIFHVIVAPCYDRKLEALQEDVPTA 820
G + PH+ TARSPQQ+MGSLVKD+FA++Q L+ D+I+HV V PCYD+KLEA + D
Sbjct: 202 GSFILPHISTARSPQQVMGSLVKDFFAQQQHLTPDKIYHVTVMPCYDKKLEASRPDFFNQ 261
Query: 821 SPGFRGTDCVLTSGEIAQMMEQSDLSVRDAALDPL 925
R DCVLT+GE+ +++E+ +S+ D PL
Sbjct: 262 EHQTRDVDCVLTTGEVFRLLEEEGVSLPDLEPAPL 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,835,449
Number of extensions: 1215837
Number of successful extensions: 6752
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6600
Number of HSP's successfully gapped: 6
Length of query: 313
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 211
Effective length of database: 14,934,836
Effective search space: 3151250396
Effective search space used: 3151250396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014591
(940 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 289 1e-75
>Sscrofa_Chr12
|| Length = 63588571
Score = 289 bits (146), Expect = 1e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 198 agaagggagaattccataaattggctgacgccaagatatttctgagcgactgcctggcat 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90126 agaagggagaattccataaattggctgacgccaagatatttctgagcgactgcctggcat 90185
Query: 258 gtgacagctgtgtgtctgcagaggaaggagtccaggtcgcccagcagaacgccaaggact 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90186 gtgacagctgtgtgtctgcagaggaaggagtccaggtcgcccagcagaacgccaaggact 90245
Query: 318 tcctccgcgtcctgaaccttaacaag 343
||||||||||||||||||||||||||
Sbjct: 90246 tcctccgcgtcctgaaccttaacaag 90271
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 476 ggggtccactatgtcttcgatgccacgatcgcggccgacttcagcatcctggagagccag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95526 ggggtccactatgtcttcgatgccacgatcgcggccgacttcagcatcctggagagccag 95585
Query: 536 aaggagttcgtgcgccggttccaccagcacagcgaggaagagcccgccttgcccatgctg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95586 aaggagttcgtgcgccggttccaccagcacagcgaggaagagcccgccttgcccatgctg 95645
Query: 596 acctccgcctgtcccgg 612
|||||||||||||||||
Sbjct: 95646 acctccgcctgtcccgg 95662
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 728 caggacctgtccgcagacaggatcttccacgtcatcgtggccccttgctacgacaggaag 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100221 caggacctgtccgcagacaggatcttccacgtcatcgtggccccttgctacgacaggaag 100280
Query: 788 ctggaggcccttcaggaggacgtgcccacggcctcgccgggtttccgcggcacagactgt 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100281 ctggaggcccttcaggaggacgtgcccacggcctcgccgggtttccgcggcacagactgt 100340
Query: 848 gtgctgacctcaggtga 864
|||||||||||||||||
Sbjct: 100341 gtgctgacctcaggtga 100357
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 342 agaagtgtgatgcctccgagcacagggtgctggcagtgtcggtgtgtcctcagtccctgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93100 agaagtgtgatgcctccgagcacagggtgctggcagtgtcggtgtgtcctcagtccctgc 93159
Query: 402 cttattttgctgcgaagttcagcctcagtgtgacggatgcatccagaagactctgtggct 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93160 cttattttgctgcgaagttcagcctcagtgtgacggatgcatccagaagactctgtggct 93219
Query: 462 tcctcaaaagtctcgg 477
||||||||||||||||
Sbjct: 93220 tcctcaaaagtctcgg 93235
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 611 ggctgggtccgctatgccgagcgggtgctgggtcacccggtcaccccccacctctgcacc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99810 ggctgggtccgctatgccgagcgggtgctgggtcacccggtcaccccccacctctgcacc 99869
Query: 671 gccagatctccccagcagatcatgggctccctggtgaaagactactttgccaggcggcag 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99870 gccagatctccccagcagatcatgggctccctggtgaaagactactttgccaggcggcag 99929
Query: 731 g 731
|
Sbjct: 99930 g 99930
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 5 gggcggcgggtggtgagcggcggtgaccgcgtctcccggtgctcccttcaggccgcgcgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20086 gggcggcgggtggtgagcggcggtgaccgcgtctcccggtgctcccttcaggccgcgcgc 20145
Query: 65 ccggacctgcccgcccggctccagatgaagtgtgagcactgcacgcggaagg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20146 ccggacctgcccgcccggctccagatgaagtgtgagcactgcacgcggaagg 20197
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 5 gggcggcgggtggtgagcggcggtgaccgcgtctcccggtgctcccttcaggccgcgcgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86038 gggcggcgggtggtgagcggcggtgaccgcgtctcccggtgctcccttcaggccgcgcgc 86097
Query: 65 ccggacctgcccgcccggctccagatgaagtgtgagcactgcacgcggaagg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86098 ccggacctgcccgcccggctccagatgaagtgtgagcactgcacgcggaagg 86149
Score = 129 bits (65), Expect = 3e-27
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 858 caggtgaaatcgctcagatgatggagcagagtgacctctcggtgagagatgctgccctgg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101277 caggtgaaatcgctcagatgatggagcagagtgacctctcggtgagagatgctgccctgg 101336
Query: 918 accccctgt 926
|| ||||||
Sbjct: 101337 acaccctgt 101345
Score = 115 bits (58), Expect = 4e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 138 ccgatgaccaagagaatgcatcagtcgaggtaccaagtccagccccggagagtggagagg 197
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 21135 ccgatgaccaagagaatgcatcagtcgaggtaccaagtccggccccggagagtggagagg 21194
Query: 198 ag 199
||
Sbjct: 21195 ag 21196
Score = 115 bits (58), Expect = 4e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 138 ccgatgaccaagagaatgcatcagtcgaggtaccaagtccagccccggagagtggagagg 197
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 87087 ccgatgaccaagagaatgcatcagtcgaggtaccaagtccggccccggagagtggagagg 87146
Query: 198 ag 199
||
Sbjct: 87147 ag 87148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,530,453
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 940
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 919
Effective length of database: 2,808,413,156
Effective search space: 2580931690364
Effective search space used: 2580931690364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)