Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093828.1| synaptogyrin-2 [Bos taurus]. 366 e-101
Alignment gi|NP_001075933.1| synaptogyrin-3 [Bos taurus]. 159 5e-39
Alignment gi|NP_001029795.1| synaptogyrin 1 [Bos taurus]. 155 7e-38
Alignment gi|NP_001039901.1| synaptogyrin-4 [Bos taurus]. 110 2e-24
>ref|NP_001093828.1| synaptogyrin-2 [Bos taurus].
Length = 224
Score = 366 bits (939), Expect = e-101
Identities = 179/224 (79%), Positives = 187/224 (83%)
Frame = +2
Query: 77 MESXXXXXXXXXXSFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCV 256
MES SFDL RFL QPQ FSCIFGEGYSN+H S +QYCV
Sbjct: 1 MESGAYGAPRAGGSFDLRRFLKQPQVVVRAVCLVFALIVFSCIFGEGYSNTHDSQQQYCV 60
Query: 257 FNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWF 436
FN N+DACRYGSAIGVLAFL SAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWF
Sbjct: 61 FNRNEDACRYGSAIGVLAFLASAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
Query: 437 VGFCFLTNQWAATKVEDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQN 616
VGFCFLTNQWAATK DV V ADSARAAITFSFFS+FSW +LA LAYQRYKAGVD+FIQN
Sbjct: 121 VGFCFLTNQWAATKKNDVHVEADSARAAITFSFFSIFSWCVLAFLAYQRYKAGVDEFIQN 180
Query: 617 YVDPTPDPSTAYASYPGVPADNYQQPPFTQNAETSEGYQPPPVY 748
YVDPTPDPSTAYASYPGVPAD YQQPPFTQNAE++EGYQPPPVY
Sbjct: 181 YVDPTPDPSTAYASYPGVPADTYQQPPFTQNAESTEGYQPPPVY 224
>ref|NP_001075933.1| synaptogyrin-3 [Bos taurus].
Length = 229
Score = 159 bits (401), Expect = 5e-39
Identities = 92/217 (42%), Positives = 117/217 (53%), Gaps = 9/217 (4%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+ D + F +PQ F I EGY N+ E CVFN N ACR+G A
Sbjct: 14 ALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNADSGPELRCVFNGNAGACRFGVA 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+G+ AFL + F ++D+ F QIS+ DR+ V+ DL FS LW+FLWFVGFCFLTNQW T
Sbjct: 74 LGLGAFLACSCFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRT 133
Query: 476 KV-EDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAY 652
D+ARA ITFSFFS+ SW L A QR++ G D + + A
Sbjct: 134 APGPGTAQAGDAARAVITFSFFSILSWVALTVKALQRFRLGTD---MSLFATEQLGAGAG 190
Query: 653 ASYPGVP-------ADNYQQPPFTQNAETS-EGYQPP 739
+YPG P D YQ PPFT+ +TS +GYQ P
Sbjct: 191 QTYPGYPVGSGVEGTDTYQSPPFTETLDTSPKGYQVP 227
>ref|NP_001029795.1| synaptogyrin 1 [Bos taurus].
Length = 191
Score = 155 bits (391), Expect = 7e-38
Identities = 74/160 (46%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + QP F I EGY NS E++C++N N +AC YG
Sbjct: 14 AFDPYTLVRQPHTILRVVSWVFSIVVFGSIVNEGYLNSPSESEEFCIYNRNPNACGYGVT 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GVLAFL + +D+YFPQIS+ DRK V+ D+ SA W FLWFVGFCFL NQW +
Sbjct: 74 VGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCFLANQWQVS 133
Query: 476 KVED--VLVGADSARAAITFSFFSVFSWGLLASLAYQRYK 589
+ +D + G D+ARAAI FSFFS+F+W L A+LA +R+K
Sbjct: 134 EPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 173
>ref|NP_001039901.1| synaptogyrin-4 [Bos taurus].
Length = 234
Score = 110 bits (274), Expect = 2e-24
Identities = 54/156 (34%), Positives = 84/156 (53%)
Frame = +2
Query: 122 DLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIG 301
+ ++FL +P+ FS + +GY N + E +CV N N AC G
Sbjct: 14 EAVQFLKRPKAITRIFAGVFSLIVFSSLLTDGYQNKTDNSELHCVLNSNSTACSIAVGAG 73
Query: 302 VLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKV 481
+LAFL S F +D + ++++ + + DL+ + +W +W VGFCFL NQW +
Sbjct: 74 LLAFLSSLAFLALDAHEVRLASTRFKTAFQLLDLILAVIWAGVWAVGFCFLANQWHRSPP 133
Query: 482 EDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYK 589
L+G++SA+AAITFSFFS+ W A LA+Q +
Sbjct: 134 RYFLLGSNSAKAAITFSFFSILVWIFQAYLAFQELR 169
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,133,993
Number of extensions: 956086
Number of successful extensions: 5422
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5363
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,273,310
Effective search space: 3225768060
Effective search space used: 3225768060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014648
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851305.1| PREDICTED: similar to synaptogyrin 2 [Canis fam... 349 2e-96
Alignment gi|XP_852509.1| PREDICTED: similar to Synaptogyrin-1 [Canis fam... 182 6e-46
Alignment gi|XP_547182.2| PREDICTED: similar to Synaptogyrin-3 [Canis fam... 159 4e-39
>ref|XP_851305.1| PREDICTED: similar to synaptogyrin 2 [Canis familiaris].
Length = 459
Score = 349 bits (896), Expect = 2e-96
Identities = 163/185 (88%), Positives = 172/185 (92%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
FSCIFGEGY+N+H S ++YC+FN N+DAC YGSAIGVLAFLGSA F VVD YFPQISNAT
Sbjct: 275 FSCIFGEGYTNTHHSIQKYCIFNHNEDACGYGSAIGVLAFLGSAAFLVVDAYFPQISNAT 334
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKVEDVLVGADSARAAITFSFFSVFSW 553
DRKYLV+ DLLFSALWTFLWFVGFCFLTNQWAATKVEDV VGADSARAAITFSFFS+FSW
Sbjct: 335 DRKYLVVSDLLFSALWTFLWFVGFCFLTNQWAATKVEDVFVGADSARAAITFSFFSIFSW 394
Query: 554 GLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAYASYPGVPADNYQQPPFTQNAETSEGYQ 733
G LASLAYQRYKAGVDDFIQNYVDPTPDPSTAYASYPG DNYQQPPFTQNAET+EGYQ
Sbjct: 395 GALASLAYQRYKAGVDDFIQNYVDPTPDPSTAYASYPGASVDNYQQPPFTQNAETTEGYQ 454
Query: 734 PPPVY 748
PPPVY
Sbjct: 455 PPPVY 459
>ref|XP_852509.1| PREDICTED: similar to Synaptogyrin-1 [Canis familiaris].
Length = 335
Score = 182 bits (461), Expect = 6e-46
Identities = 94/192 (48%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
F I EGY NS+ GE +C++N N AC YG +GVLAFL + +D+YFPQIS+
Sbjct: 141 FGSIVNEGYLNSNSGGETFCIYNRNPSACSYGVTVGVLAFLTCLLYLALDVYFPQISSVK 200
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKVED--VLVGADSARAAITFSFFSVF 547
DRK V+ D+ SA W FLWFVGFCFL NQW +K +D + G D+ARAAITFSFFS+F
Sbjct: 201 DRKKAVLSDIGVSAFWAFLWFVGFCFLANQWQVSKPKDNPMNEGTDAARAAITFSFFSIF 260
Query: 548 SWGLLASLAYQRYKAGVDD--FIQNYVDPTPDPSTAYASY--------PGVPADNYQQPP 697
+W A LA+QRY+ G D F Q+Y+DP+ D S YA Y P YQQP
Sbjct: 261 TWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPSAGPDPAGMGGTYQQPA 320
Query: 698 FTQNAETSEGYQ 733
+ E +GYQ
Sbjct: 321 NAFDTE-PQGYQ 331
>ref|XP_547182.2| PREDICTED: similar to Synaptogyrin-3 [Canis familiaris].
Length = 198
Score = 159 bits (402), Expect = 4e-39
Identities = 90/188 (47%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
F I EGY N+ E CVFN N ACR+G A+G+ AFL A F ++D+ F QIS+
Sbjct: 9 FGPIVNEGYVNTDSGPELRCVFNGNAGACRFGIALGLGAFLACAAFLLLDVRFQQISSVR 68
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKV-EDVLVGADSARAAITFSFFSVFS 550
DR+ V+ DL FS LW+FLWFVGFCFLTNQW T L D+ARAAI FSFFS+ S
Sbjct: 69 DRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRTAPGPSTLQAGDAARAAIAFSFFSILS 128
Query: 551 WGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAYASYP---GVP-ADNYQQPPFTQNAET 718
W L A QR++ G D + AY YP GV + YQ PPFT+ +T
Sbjct: 129 WVALTVKALQRFRLGTDMSLFATEQLGTGAGQAYPGYPVGSGVEGTETYQSPPFTETLDT 188
Query: 719 S-EGYQPP 739
S +GYQ P
Sbjct: 189 SPKGYQVP 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,419,001
Number of extensions: 963765
Number of successful extensions: 5365
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5320
Number of HSP's successfully gapped: 3
Length of query: 329
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 226
Effective length of database: 15,440,896
Effective search space: 3489642496
Effective search space used: 3489642496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355380.1| PREDICTED: synaptogyrin-1-like [Sus scrofa]. 179 3e-45
Alignment gi|XP_003124775.1| PREDICTED: synaptogyrin-3-like isoform 1 [Su... 161 5e-40
Alignment gi|XP_003124776.1| PREDICTED: synaptogyrin-3-like isoform 2 [Su... 159 3e-39
Alignment gi|XP_003127321.2| PREDICTED: synaptogyrin-4-like [Sus scrofa]. 108 4e-24
>ref|XP_003355380.1| PREDICTED: synaptogyrin-1-like [Sus scrofa].
Length = 262
Score = 179 bits (453), Expect = 3e-45
Identities = 93/192 (48%), Positives = 118/192 (61%), Gaps = 12/192 (6%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
F I EGY NS E++CV+N N +AC YG +GVLAFL + +D+YFPQIS+
Sbjct: 68 FGSIVNEGYLNSPSESEEFCVYNRNPNACGYGVTVGVLAFLTCLLYLALDVYFPQISSVK 127
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKVED--VLVGADSARAAITFSFFSVF 547
DRK V+ D+ SA W FLWFVGFC+L NQW +K +D + G D+ARAAI FSFFS+F
Sbjct: 128 DRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIF 187
Query: 548 SWGLLASLAYQRYKAGVDD--FIQNYVDPTPDPSTAYASY--------PGVPADNYQQPP 697
+W A LA+QRY+ G D F Q+Y+DP+ D S YA Y P YQQP
Sbjct: 188 TWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPSTGPDPAGMGGTYQQPA 247
Query: 698 FTQNAETSEGYQ 733
T + E +GYQ
Sbjct: 248 NTFDTE-PQGYQ 258
>ref|XP_003124775.1| PREDICTED: synaptogyrin-3-like isoform 1 [Sus scrofa].
Length = 229
Score = 161 bits (408), Expect = 5e-40
Identities = 95/214 (44%), Positives = 118/214 (55%), Gaps = 6/214 (2%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+ D + F +PQ F I EGY N+ E CVFN N ACR+G
Sbjct: 14 ALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDNGPELRCVFNGNAGACRFGIV 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GV AFL A F ++D+ F QIS+ DR+ V+ DL FS LW+FLWFVGFCFLTNQW T
Sbjct: 74 LGVGAFLACAAFLLLDMRFQQISSVRDRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRT 133
Query: 476 KVEDVLVGA-DSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAY 652
+ V A D+ARAAI FSFFS+ SW L A QR++ G D + AY
Sbjct: 134 APDPGTVQAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSLFATEQLGAGAGQAY 193
Query: 653 ASYP---GVP-ADNYQQPPFTQNAETS-EGYQPP 739
YP GV + YQ PPFT+ +TS +GYQ P
Sbjct: 194 PGYPVGSGVEGTETYQSPPFTETLDTSPKGYQVP 227
>ref|XP_003124776.1| PREDICTED: synaptogyrin-3-like isoform 2 [Sus scrofa].
Length = 253
Score = 159 bits (401), Expect = 3e-39
Identities = 91/188 (48%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
F I EGY N+ E CVFN N ACR+G +GV AFL A F ++D+ F QIS+
Sbjct: 64 FGPIVNEGYVNTDNGPELRCVFNGNAGACRFGIVLGVGAFLACAAFLLLDMRFQQISSVR 123
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKVEDVLVGA-DSARAAITFSFFSVFS 550
DR+ V+ DL FS LW+FLWFVGFCFLTNQW T + V A D+ARAAI FSFFS+ S
Sbjct: 124 DRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRTAPDPGTVQAGDAARAAIAFSFFSILS 183
Query: 551 WGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAYASYP---GVP-ADNYQQPPFTQNAET 718
W L A QR++ G D + AY YP GV + YQ PPFT+ +T
Sbjct: 184 WVALTVKALQRFRLGTDMSLFATEQLGAGAGQAYPGYPVGSGVEGTETYQSPPFTETLDT 243
Query: 719 S-EGYQPP 739
S +GYQ P
Sbjct: 244 SPKGYQVP 251
>ref|XP_003127321.2| PREDICTED: synaptogyrin-4-like [Sus scrofa].
Length = 234
Score = 108 bits (271), Expect = 4e-24
Identities = 55/153 (35%), Positives = 81/153 (52%)
Frame = +2
Query: 122 DLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIG 301
+ ++FL +P+ FS + +GY N S + +CV N N AC + G
Sbjct: 14 EAVQFLKRPKTITRLFAGVFSLIVFSSLLTDGYQNKTNSSQLHCVLNSNRSACSFAVGAG 73
Query: 302 VLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKV 481
+LAFL F +D + ++++ + + D + + LW +WFVGFCFL NQW +
Sbjct: 74 LLAFLSCLAFLALDAHESLLASSRFKTAFQLLDFILAILWAGIWFVGFCFLANQWQHSPS 133
Query: 482 EDVLVGADSARAAITFSFFSVFSWGLLASLAYQ 580
L+G+ SA+AAITFSFFSV W A LA Q
Sbjct: 134 RHFLLGSSSAKAAITFSFFSVPLWIFQAYLALQ 166
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,441,779
Number of extensions: 660240
Number of successful extensions: 3551
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 4
Length of query: 329
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,879,129
Effective search space: 2042199670
Effective search space used: 2042199670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033330.1| synaptogyrin-2 [Mus musculus]. 353 1e-97
Alignment gi|NP_997591.1| synaptogyrin-1 isoform 1a [Mus musculus]. 177 1e-44
Alignment gi|NP_035652.2| synaptogyrin-3 [Mus musculus]. 158 7e-39
Alignment gi|NP_033329.1| synaptogyrin-1 isoform 1b [Mus musculus]. 154 1e-37
Alignment gi|NP_067457.2| synaptogyrin-4 [Mus musculus]. 106 3e-23
>ref|NP_033330.1| synaptogyrin-2 [Mus musculus].
Length = 224
Score = 353 bits (905), Expect = 1e-97
Identities = 171/224 (76%), Positives = 182/224 (81%)
Frame = +2
Query: 77 MESXXXXXXXXXXSFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCV 256
MES SFDL RFL+QPQ FSCIFGEGY+N H S + YCV
Sbjct: 1 MESGAYGAANAGGSFDLRRFLSQPQVVTRLVSMVLALIVFSCIFGEGYTNIHTSDQLYCV 60
Query: 257 FNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWF 436
FN N+DACRYGSAIGVLAFL SAFF VVD +F QISNATDRKYLVIGDLLFSALWTFLWF
Sbjct: 61 FNQNEDACRYGSAIGVLAFLASAFFLVVDAFFSQISNATDRKYLVIGDLLFSALWTFLWF 120
Query: 437 VGFCFLTNQWAATKVEDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQN 616
VGFCFLTNQWAATK +DV VGADSARAAITFSFFS+FSWG+LASLAYQRYKAGVD FIQN
Sbjct: 121 VGFCFLTNQWAATKPQDVRVGADSARAAITFSFFSIFSWGVLASLAYQRYKAGVDAFIQN 180
Query: 617 YVDPTPDPSTAYASYPGVPADNYQQPPFTQNAETSEGYQPPPVY 748
YVDPTPDP+TAYASYP +NYQQPPFTQN ET+EGYQPPPVY
Sbjct: 181 YVDPTPDPNTAYASYPSASVENYQQPPFTQNVETTEGYQPPPVY 224
>ref|NP_997591.1| synaptogyrin-1 isoform 1a [Mus musculus].
Length = 234
Score = 177 bits (448), Expect = 1e-44
Identities = 94/218 (43%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + QP F I EGY N+ + E++C++N N +AC YG
Sbjct: 14 AFDPYTLVRQPHTILRVVSWVFSIVVFGSIVNEGYLNNPEEEEEFCIYNRNPNACSYGVT 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GVLAFL + +D+YFPQIS+ DRK V+ D+ SA W F WFVGFCFL NQW +
Sbjct: 74 VGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFFWFVGFCFLANQWQVS 133
Query: 476 KVED--VLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDD--FIQNYVDPTPDPS 643
K +D + G D+ARAAI FSFFS+F+W A LA+QRY+ G D F Q+Y+DP+ D S
Sbjct: 134 KPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSS 193
Query: 644 TAYASY--------PGVPADNYQQPPFTQNAETSEGYQ 733
YA Y P YQ P +AE +GYQ
Sbjct: 194 MPYAPYVEPSAGSDPAGMGGTYQHPANAFDAE-PQGYQ 230
>ref|NP_035652.2| synaptogyrin-3 [Mus musculus].
Length = 229
Score = 158 bits (399), Expect = 7e-39
Identities = 91/214 (42%), Positives = 116/214 (54%), Gaps = 6/214 (2%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + F +PQ F I EGY NS E CVFN N ACR+G
Sbjct: 14 AFDPVSFARRPQTLLRVVSWVFSIAVFGPIVNEGYVNSDSGPELRCVFNGNAGACRFGVV 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQW-AA 472
+G+ AF+ F ++D+ F QIS+ DR+ V+ DL FS +W+FLWFVGFCFLTNQW
Sbjct: 74 LGLGAFIACVAFLLLDVRFQQISSVRDRRRAVLLDLGFSGVWSFLWFVGFCFLTNQWQRT 133
Query: 473 TKVEDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAY 652
T D+ARAAI FSFFS+ SW L A QR++ G D + + AY
Sbjct: 134 TPGPGTAQAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSLFATDQLGTGAAQAY 193
Query: 653 ASYP---GVP-ADNYQQPPFTQNAET-SEGYQPP 739
YP GV + YQ PPFT+ +T S+GYQ P
Sbjct: 194 PGYPVGSGVEGTETYQSPPFTETLDTSSKGYQVP 227
>ref|NP_033329.1| synaptogyrin-1 isoform 1b [Mus musculus].
Length = 191
Score = 154 bits (388), Expect = 1e-37
Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + QP F I EGY N+ + E++C++N N +AC YG
Sbjct: 14 AFDPYTLVRQPHTILRVVSWVFSIVVFGSIVNEGYLNNPEEEEEFCIYNRNPNACSYGVT 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GVLAFL + +D+YFPQIS+ DRK V+ D+ SA W F WFVGFCFL NQW +
Sbjct: 74 VGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFFWFVGFCFLANQWQVS 133
Query: 476 KVED--VLVGADSARAAITFSFFSVFSWGLLASLAYQRYK 589
K +D + G D+ARAAI FSFFS+F+W L A+LA +R+K
Sbjct: 134 KPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 173
>ref|NP_067457.2| synaptogyrin-4 [Mus musculus].
Length = 233
Score = 106 bits (264), Expect = 3e-23
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 8/195 (4%)
Frame = +2
Query: 122 DLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIG 301
+ +RFL +P+ FS + +GY N +S + CV N N AC + G
Sbjct: 14 ETVRFLRRPKSISRIFGGVFSLVIFSSLLTDGYQNRTESPQLRCVLNSNHMACSFAVGAG 73
Query: 302 VLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKV 481
L+FL F +D Y ++ + + D + + LW +WFV FCFL +QW +K
Sbjct: 74 FLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILAVLWAGVWFVAFCFLASQWQHSKS 133
Query: 482 EDVLVGADSARAAITFSFFSVFSWGLLASLAYQ--------RYKAGVDDFIQNYVDPTPD 637
+ L+G SA+AAI FSFFSV W L A LA+Q YK +++ + V T
Sbjct: 134 KHFLLGNSSAKAAIAFSFFSVPVWILQAYLAFQDLRDEAPVPYKRSLEE--GSVVLNTLS 191
Query: 638 PSTAYASYPGVPADN 682
PS+ S P + N
Sbjct: 192 PSSTSPSNPPITGPN 206
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,453,287
Number of extensions: 760288
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4105
Number of HSP's successfully gapped: 5
Length of query: 329
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 227
Effective length of database: 12,553,887
Effective search space: 2849732349
Effective search space used: 2849732349
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004701.1| synaptogyrin-2 [Homo sapiens]. 367 e-101
Alignment gi|NP_004702.2| synaptogyrin-1 isoform 1a [Homo sapiens]. 185 5e-47
Alignment gi|NP_004200.2| synaptogyrin-3 [Homo sapiens]. 163 2e-40
Alignment gi|NP_663783.1| synaptogyrin-1 isoform 1b [Homo sapiens]. 159 3e-39
Alignment gi|NP_663791.1| synaptogyrin-1 isoform 1c [Homo sapiens]. 157 1e-38
Alignment gi|NP_036583.2| synaptogyrin-4 [Homo sapiens]. 108 6e-24
>ref|NP_004701.1| synaptogyrin-2 [Homo sapiens].
Length = 224
Score = 367 bits (941), Expect = e-101
Identities = 176/224 (78%), Positives = 186/224 (83%)
Frame = +2
Query: 77 MESXXXXXXXXXXSFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCV 256
MES SFDL RFLTQPQ FSCI+GEGYSN+H+S + YCV
Sbjct: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
Query: 257 FNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWF 436
FN N+DACRYGSAIGVLAFL SAFF VVD YFPQISNATDRKYLVIGDLLFSALWTFLWF
Sbjct: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
Query: 437 VGFCFLTNQWAATKVEDVLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQN 616
VGFCFLTNQWA T +DVLVGADS RAAITFSFFS+FSWG+LASLAYQRYKAGVDDFIQN
Sbjct: 121 VGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDDFIQN 180
Query: 617 YVDPTPDPSTAYASYPGVPADNYQQPPFTQNAETSEGYQPPPVY 748
YVDPTPDP+TAYASYPG DNYQQPPFTQNAET+EGYQPPPVY
Sbjct: 181 YVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGYQPPPVY 224
>ref|NP_004702.2| synaptogyrin-1 isoform 1a [Homo sapiens].
Length = 233
Score = 185 bits (470), Expect = 5e-47
Identities = 98/217 (45%), Positives = 126/217 (58%), Gaps = 11/217 (5%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + QP F I EGY NS GE++C++N N +AC YG A
Sbjct: 14 AFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVA 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GVLAFL + +D+YFPQIS+ DRK V+ D+ SA W FLWFVGFC+L NQW +
Sbjct: 74 VGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVS 133
Query: 476 KVED--VLVGADSARAAITFSFFSVFSWGLLASLAYQRYKAGVDD--FIQNYVDPTPDPS 643
K +D + G D+ARAAI FSFFS+F+W A LA+QRY+ G D F Q+Y+DP+ D S
Sbjct: 134 KPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSS 193
Query: 644 TAYASY-------PGVPADNYQQPPFTQNAETSEGYQ 733
YA Y P YQQP T + E +GYQ
Sbjct: 194 MPYAPYVEPTGPDPAGMGGTYQQPANTFDTE-PQGYQ 229
>ref|NP_004200.2| synaptogyrin-3 [Homo sapiens].
Length = 229
Score = 163 bits (413), Expect = 2e-40
Identities = 95/214 (44%), Positives = 119/214 (55%), Gaps = 6/214 (2%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+ D + F +PQ F I EGY N+ E CVFN N ACR+G A
Sbjct: 14 ALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDSGPELRCVFNGNAGACRFGVA 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+G+ AFL A F ++D+ F QIS+ DR+ V+ DL FS LW+FLWFVGFCFLTNQW T
Sbjct: 74 LGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRT 133
Query: 476 KVEDVLVGA-DSARAAITFSFFSVFSWGLLASLAYQRYKAGVDDFIQNYVDPTPDPSTAY 652
A D+ARAAI FSFFS+ SW L A QR++ G D + + S AY
Sbjct: 134 APGPATTQAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSLFATEQLSTGASQAY 193
Query: 653 ASYP---GVP-ADNYQQPPFTQNAETS-EGYQPP 739
YP GV + YQ PPFT+ +TS +GYQ P
Sbjct: 194 PGYPVGSGVEGTETYQSPPFTETLDTSPKGYQVP 227
>ref|NP_663783.1| synaptogyrin-1 isoform 1b [Homo sapiens].
Length = 191
Score = 159 bits (403), Expect = 3e-39
Identities = 76/160 (47%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Frame = +2
Query: 116 SFDLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSA 295
+FD + QP F I EGY NS GE++C++N N +AC YG A
Sbjct: 14 AFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVA 73
Query: 296 IGVLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAAT 475
+GVLAFL + +D+YFPQIS+ DRK V+ D+ SA W FLWFVGFC+L NQW +
Sbjct: 74 VGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVS 133
Query: 476 KVED--VLVGADSARAAITFSFFSVFSWGLLASLAYQRYK 589
K +D + G D+ARAAI FSFFS+F+W L A+LA +R+K
Sbjct: 134 KPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK 173
>ref|NP_663791.1| synaptogyrin-1 isoform 1c [Homo sapiens].
Length = 192
Score = 157 bits (397), Expect = 1e-38
Identities = 72/134 (53%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Frame = +2
Query: 194 FSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIGVLAFLGSAFFFVVDIYFPQISNAT 373
F I EGY NS GE++C++N N +AC YG A+GVLAFL + +D+YFPQIS+
Sbjct: 41 FGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVK 100
Query: 374 DRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKVED--VLVGADSARAAITFSFFSVF 547
DRK V+ D+ SA W FLWFVGFC+L NQW +K +D + G D+ARAAI FSFFS+F
Sbjct: 101 DRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIF 160
Query: 548 SWGLLASLAYQRYK 589
+W L A+LA +R+K
Sbjct: 161 TWSLTAALAVRRFK 174
>ref|NP_036583.2| synaptogyrin-4 [Homo sapiens].
Length = 234
Score = 108 bits (271), Expect = 6e-24
Identities = 52/153 (33%), Positives = 82/153 (53%)
Frame = +2
Query: 122 DLLRFLTQPQXXXXXXXXXXXXXXFSCIFGEGYSNSHKSGEQYCVFNCNDDACRYGSAIG 301
+ ++FL +P+ FS + +GY N +S + +C+ N N AC + G
Sbjct: 14 EAVQFLRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAVGAG 73
Query: 302 VLAFLGSAFFFVVDIYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFLTNQWAATKV 481
LAFL F V+D +I+ + + D + + LW +WF+GFCFL NQW +
Sbjct: 74 FLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPP 133
Query: 482 EDVLVGADSARAAITFSFFSVFSWGLLASLAYQ 580
++ L+G+ SA+AAI F+FFS+ W A LA+Q
Sbjct: 134 KEFLLGSSSAQAAIAFTFFSILVWIFQAYLAFQ 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,575,115
Number of extensions: 927045
Number of successful extensions: 4988
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4940
Number of HSP's successfully gapped: 6
Length of query: 329
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 226
Effective length of database: 14,901,872
Effective search space: 3367823072
Effective search space used: 3367823072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014648
(989 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 70 3e-09
>Sscrofa_Chr03
|| Length = 144787322
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 416 ctctggaccttcctgtggttcgttggcttctgcttcctcaccaatcagtgg 466
|||||| ||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 42204995 ctctggtccttcctgtggtttgtgggcttctgcttcctcaccaaccagtgg 42205045
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,451,770
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 989
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 968
Effective length of database: 2,808,413,156
Effective search space: 2718543935008
Effective search space used: 2718543935008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)