Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033164.1| B-cell receptor-associated protein 29 [Bos t... 393 e-109
Alignment gi|NP_001014941.1| B-cell receptor-associated protein 31 [Bos t... 197 9e-51
>ref|NP_001033164.1| B-cell receptor-associated protein 29 [Bos taurus].
Length = 240
Score = 393 bits (1009), Expect = e-109
Identities = 200/233 (85%), Positives = 209/233 (89%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MTLQW AVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIA+FWNKA
Sbjct: 1 MTLQWTAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSS H IE+SSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 VLFLDAVREVRKYSSTHTIEKSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKELS+KGVLK QAE+ N+AAKKFMEENERLKRLLKNYGKEE+HILE ENKKL
Sbjct: 121 VTLITQLAKELSHKGVLKHQAENINQAAKKFMEENERLKRLLKNYGKEEEHILEAENKKL 180
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHA 745
EDKEKL+TELKK SDALSKAQNDVM MK+QSERLSKEYD LL+EHSELQD A
Sbjct: 181 EEDKEKLKTELKKASDALSKAQNDVMIMKMQSERLSKEYDRLLREHSELQDRA 233
>ref|NP_001014941.1| B-cell receptor-associated protein 31 [Bos taurus].
Length = 245
Score = 197 bits (502), Expect = 9e-51
Identities = 108/234 (46%), Positives = 150/234 (64%), Gaps = 4/234 (1%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVRE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDAVREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKR----LLKNYGKEEDHILEEE 574
VTLI+Q A L++ K QAES + AAKK+MEEN+ LK+ + K G++ + ++EE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASDAAKKYMEENDLLKKEAGGVTKLGGRDSEVKVQEE 179
Query: 575 NKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
N+ L D ++L+ EL L KA+N+ + M+ QS+ L+KEYD LL+EH++LQ
Sbjct: 180 NRSLKADLKRLKDELAVNKQKLEKAENEALAMRKQSKGLTKEYDRLLEEHTKLQ 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,511,670
Number of extensions: 588925
Number of successful extensions: 2982
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2905
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533092.2| PREDICTED: similar to B-cell receptor-associate... 376 e-104
Alignment gi|XP_538200.1| PREDICTED: similar to B-cell receptor-associate... 201 9e-52
Alignment gi|XP_853216.1| PREDICTED: similar to B-cell receptor-associate... 96 5e-20
>ref|XP_533092.2| PREDICTED: similar to B-cell receptor-associated protein BAP29
isoform d [Canis familiaris].
Length = 293
Score = 376 bits (966), Expect = e-104
Identities = 191/232 (82%), Positives = 206/232 (88%)
Frame = +2
Query: 41 KKMTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXX 220
K+MTLQW AVATFLYAEIGLILIFCLPFIPPQRWQKIFSF+VWGKIATFWNKA
Sbjct: 49 KEMTLQWVAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIIL 108
Query: 221 XXXXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLR 400
DAVREVRKYSS AIE+ +RP AYEH QMKLFRSQRNLYISGFSLFFWLVLR
Sbjct: 109 LIVLFLDAVREVRKYSSIPAIEKGLTTRPGAYEHAQMKLFRSQRNLYISGFSLFFWLVLR 168
Query: 401 RLVTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENK 580
RLVTLITQLAKELSNKGVLK+QAE+TN+AAKKFMEENERLK+LLK+Y KEE+HILE ENK
Sbjct: 169 RLVTLITQLAKELSNKGVLKTQAENTNEAAKKFMEENERLKQLLKSYVKEEEHILETENK 228
Query: 581 KLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
KLVED+EKL+TELKK S+ALSKAQ DVMTM++QSERLSKEYD LLKEHSELQ
Sbjct: 229 KLVEDQEKLKTELKKTSEALSKAQKDVMTMRMQSERLSKEYDRLLKEHSELQ 280
>ref|XP_538200.1| PREDICTED: similar to B-cell receptor-associated protein 31
(BCR-associated protein Bap31) (p28 Bap31) (CDM protein)
(6C6-AG tumor-associated antigen) (DXS1357E) [Canis
familiaris].
Length = 246
Score = 201 bits (511), Expect = 9e-52
Identities = 111/235 (47%), Positives = 151/235 (64%), Gaps = 5/235 (2%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVRE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDAVREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRL-----LKNYGKEEDHILEE 571
VTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ +K GK+ + +EE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAAGGVKLDGKDAEEKVEE 179
Query: 572 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
EN+ L D +KL+ EL L KA+ + + M+ QSE L+KEYD LL+EH++LQ
Sbjct: 180 ENRSLKADLKKLKDELDINKQKLEKAEREAVAMRKQSEGLTKEYDRLLEEHAKLQ 234
>ref|XP_853216.1| PREDICTED: similar to B-cell receptor-associated protein 31 [Canis
familiaris].
Length = 144
Score = 95.9 bits (237), Expect = 5e-20
Identities = 54/112 (48%), Positives = 72/112 (64%)
Frame = +2
Query: 239 DAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRLVTLI 418
DAVRE+RKY + + + P A EH MKLFR+QRNLY++GFSL +LR LVTLI
Sbjct: 34 DAVREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYVAGFSLLLSFLLRGLVTLI 92
Query: 419 TQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEE 574
+Q A L K QAES ++AAKK+MEEN++LK+ G + LE++
Sbjct: 93 SQQATLLVANEAFKKQAESASEAAKKYMEENDQLKKEAAAGGVKSLRFLEDD 144
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,750,699
Number of extensions: 607684
Number of successful extensions: 3961
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3701
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357558.1| PREDICTED: b-cell receptor-associated protei... 430 e-121
Alignment gi|XP_003357557.1| PREDICTED: b-cell receptor-associated protei... 430 e-121
Alignment gi|XP_003135528.2| PREDICTED: b-cell receptor-associated protei... 196 2e-50
>ref|XP_003357558.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 2
[Sus scrofa].
Length = 241
Score = 430 bits (1106), Expect = e-121
Identities = 221/234 (94%), Positives = 221/234 (94%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKA
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 180
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR 748
VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR
Sbjct: 181 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR 234
>ref|XP_003357557.1| PREDICTED: b-cell receptor-associated protein 29-like isoform 1
[Sus scrofa].
Length = 241
Score = 430 bits (1106), Expect = e-121
Identities = 221/234 (94%), Positives = 221/234 (94%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKA
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAFLTIIVLLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 VLFLDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL
Sbjct: 121 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 180
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR 748
VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR
Sbjct: 181 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR 234
>ref|XP_003135528.2| PREDICTED: b-cell receptor-associated protein 31-like [Sus scrofa].
Length = 246
Score = 196 bits (498), Expect = 2e-50
Identities = 108/235 (45%), Positives = 150/235 (63%), Gaps = 5/235 (2%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW AVATFLYAE+ +L+ C+PFI P+RWQKIF + + T+ N
Sbjct: 1 MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DA+RE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDALREIRKYDDVTE-KVNLQNNPGAVEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRL-----LKNYGKEEDHILEE 571
VTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ +K G + +EE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKEAAVGGVKLDGGDAGGKVEE 179
Query: 572 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
EN+ L + ++L+ EL L KA+N+ + M+ QSE L+KEYD LL+EH++LQ
Sbjct: 180 ENRSLKAELKRLKEELAVSKQKLEKAENEALAMRKQSEGLTKEYDRLLEEHTKLQ 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,269,034
Number of extensions: 374927
Number of successful extensions: 1908
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157562.1| B-cell receptor-associated protein 29 [Mus m... 359 2e-99
Alignment gi|NP_031556.1| B-cell receptor-associated protein 29 [Mus musc... 359 2e-99
Alignment gi|NP_036190.2| B-cell receptor-associated protein 31 [Mus musc... 196 2e-50
>ref|NP_001157562.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 359 bits (921), Expect = 2e-99
Identities = 182/231 (78%), Positives = 202/231 (87%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MT+QWAAVA+FLYAEIGLIL+FCLPFIPPQRWQKIFSFSVWGKIA+FWNKA
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSS + +E++SA RP+A+EHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 ILFLDAVREVRKYSSTNVVEKNSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKE++NKGVLK QAE+TNKAAKKFMEENE+LK L+N EE H+LE ENKKL
Sbjct: 121 VTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLKLGLRNDNAEE-HLLEAENKKL 179
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQD 739
+E KE L+TELKK SDAL KAQNDVMTMK+QSERLSKEYD LLKEHSELQ+
Sbjct: 180 IESKENLKTELKKASDALLKAQNDVMTMKIQSERLSKEYDRLLKEHSELQN 230
>ref|NP_031556.1| B-cell receptor-associated protein 29 [Mus musculus].
Length = 240
Score = 359 bits (921), Expect = 2e-99
Identities = 182/231 (78%), Positives = 202/231 (87%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MT+QWAAVA+FLYAEIGLIL+FCLPFIPPQRWQKIFSFSVWGKIA+FWNKA
Sbjct: 1 MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSS + +E++SA RP+A+EHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 ILFLDAVREVRKYSSTNVVEKNSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKE++NKGVLK QAE+TNKAAKKFMEENE+LK L+N EE H+LE ENKKL
Sbjct: 121 VTLITQLAKEIANKGVLKIQAENTNKAAKKFMEENEKLKLGLRNDNAEE-HLLEAENKKL 179
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQD 739
+E KE L+TELKK SDAL KAQNDVMTMK+QSERLSKEYD LLKEHSELQ+
Sbjct: 180 IESKENLKTELKKASDALLKAQNDVMTMKIQSERLSKEYDRLLKEHSELQN 230
>ref|NP_036190.2| B-cell receptor-associated protein 31 [Mus musculus].
Length = 245
Score = 196 bits (498), Expect = 2e-50
Identities = 109/238 (45%), Positives = 146/238 (61%), Gaps = 4/238 (1%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW VATFLYAE+ +L+ C+PFI P+RWQK+F + + T+ N
Sbjct: 1 MSLQWTTVATFLYAEVFAVLLLCIPFISPKRWQKVFKSRLVELVVTYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVRE+ KY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDAVREILKYDDVTE-KVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEED----HILEEE 574
VTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ G + D + EE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAEDGDKLDIGNTEMKLEE 179
Query: 575 NKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQDHAR 748
NK L D KL+ EL L KA+N+ + M+ QSE L+KEYD LL+EH++LQ R
Sbjct: 180 NKSLKNDLRKLKDELASTKKKLEKAENEALAMQKQSEGLTKEYDRLLEEHAKLQASVR 237
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,208,787
Number of extensions: 522968
Number of successful extensions: 2642
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2524
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008405.1| B-cell receptor-associated protein 29 isofor... 383 e-115
Alignment gi|NP_061332.2| B-cell receptor-associated protein 29 isoform b... 385 e-107
Alignment gi|NP_001132929.1| B-cell receptor-associated protein 31 isofor... 201 9e-52
Alignment gi|NP_005736.3| B-cell receptor-associated protein 31 isoform b... 200 2e-51
Alignment gi|NP_001132913.1| B-cell receptor-associated protein 31 isofor... 200 2e-51
>ref|NP_001008405.1| B-cell receptor-associated protein 29 isoform a [Homo sapiens].
Length = 348
Score = 383 bits (983), Expect(3) = e-115
Identities = 193/230 (83%), Positives = 208/230 (90%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSF+VWGKIATFWNKA
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSS H IE+SS SRP AYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKELSNKGVLK+QAE+TNKAAKKFMEENE+LKR+LK++GK+E+ +LE ENKKL
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEECVLEAENKKL 180
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
VED+EKL+TEL+K SDALSKAQNDVM MK+QSERLSKEYD LLKEHSELQ
Sbjct: 181 VEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQ 230
Score = 47.0 bits (110), Expect(3) = e-115
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +1
Query: 715 ERTLRTSGSCTERQ*ERPVNLMKEDCDTPCQDDKFVIMLASRKFKFTSEKY 867
++T GS +RQ E+ VN +K+ C+ CQ+D FV MLASRKFKF Y
Sbjct: 250 KQTGSRKGSFRKRQQEKTVNFIKDTCNILCQNDNFV-MLASRKFKFRKMHY 299
Score = 27.3 bits (59), Expect(3) = e-115
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 855 FRKIYQPEF--FVMLHV*ALIIMALSQYLMFRHI 950
FRK++ F F+M H+ I+MALS+YLM I
Sbjct: 294 FRKMHYDRFVIFLMPHI-GCIVMALSKYLMMFQI 326
>ref|NP_061332.2| B-cell receptor-associated protein 29 isoform b [Homo sapiens].
Length = 241
Score = 385 bits (989), Expect = e-107
Identities = 194/231 (83%), Positives = 209/231 (90%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSF+VWGKIATFWNKA
Sbjct: 1 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFNVWGKIATFWNKAFLTIIILLI 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVREVRKYSS H IE+SS SRP AYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL
Sbjct: 61 VLFLDAVREVRKYSSVHTIEKSSTSRPDAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 120
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEEDHILEEENKKL 586
VTLITQLAKELSNKGVLK+QAE+TNKAAKKFMEENE+LKR+LK++GK+E+ +LE ENKKL
Sbjct: 121 VTLITQLAKELSNKGVLKTQAENTNKAAKKFMEENEKLKRILKSHGKDEECVLEAENKKL 180
Query: 587 VEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQD 739
VED+EKL+TEL+K SDALSKAQNDVM MK+QSERLSKEYD LLKEHSELQD
Sbjct: 181 VEDQEKLKTELRKTSDALSKAQNDVMEMKMQSERLSKEYDQLLKEHSELQD 231
>ref|NP_001132929.1| B-cell receptor-associated protein 31 isoform a [Homo sapiens].
Length = 313
Score = 201 bits (511), Expect = 9e-52
Identities = 112/236 (47%), Positives = 151/236 (63%), Gaps = 5/236 (2%)
Frame = +2
Query: 44 KMTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXX 223
+M+LQW AVATFLYAE+ ++L+ C+PFI P+RWQKIF + + ++ N
Sbjct: 67 RMSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVIL 126
Query: 224 XXXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRR 403
DAVRE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRR
Sbjct: 127 VLLVIDAVREIRKYDDVTE-KVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRR 185
Query: 404 LVTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEED-----HILE 568
LVTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ G + D LE
Sbjct: 186 LVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLE 245
Query: 569 EENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
EEN+ L D +KL+ EL L KA+N V+ M+ QSE L+KEYD LL+EH++LQ
Sbjct: 246 EENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQ 301
>ref|NP_005736.3| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 200 bits (509), Expect = 2e-51
Identities = 112/235 (47%), Positives = 150/235 (63%), Gaps = 5/235 (2%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW AVATFLYAE+ ++L+ C+PFI P+RWQKIF + + ++ N
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVRE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDAVREIRKYDDVTE-KVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEED-----HILEE 571
VTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ G + D LEE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEE 179
Query: 572 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
EN+ L D +KL+ EL L KA+N V+ M+ QSE L+KEYD LL+EH++LQ
Sbjct: 180 ENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQ 234
>ref|NP_001132913.1| B-cell receptor-associated protein 31 isoform b [Homo sapiens].
Length = 246
Score = 200 bits (509), Expect = 2e-51
Identities = 112/235 (47%), Positives = 150/235 (63%), Gaps = 5/235 (2%)
Frame = +2
Query: 47 MTLQWAAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSVWGKIATFWNKAXXXXXXXXX 226
M+LQW AVATFLYAE+ ++L+ C+PFI P+RWQKIF + + ++ N
Sbjct: 1 MSLQWTAVATFLYAEVFVVLLLCIPFISPKRWQKIFKSRLVELLVSYGNTFFVVLIVILV 60
Query: 227 XXXXDAVREVRKYSSAHAIERSSASRPAAYEHTQMKLFRSQRNLYISGFSLFFWLVLRRL 406
DAVRE+RKY + + + P A EH MKLFR+QRNLYI+GFSL +LRRL
Sbjct: 61 LLVIDAVREIRKYDDVTE-KVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRL 119
Query: 407 VTLITQLAKELSNKGVLKSQAESTNKAAKKFMEENERLKRLLKNYGKEED-----HILEE 571
VTLI+Q A L++ K QAES ++AAKK+MEEN++LK+ G + D LEE
Sbjct: 120 VTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKGAAVDGGKLDVGNAEVKLEE 179
Query: 572 ENKKLVEDKEKLQTELKKVSDALSKAQNDVMTMKVQSERLSKEYDLLLKEHSELQ 736
EN+ L D +KL+ EL L KA+N V+ M+ QSE L+KEYD LL+EH++LQ
Sbjct: 180 ENRSLKADLQKLKDELASTKQKLEKAENQVLAMRKQSEGLTKEYDRLLEEHAKLQ 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,306,628
Number of extensions: 604916
Number of successful extensions: 3300
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3146
Number of HSP's successfully gapped: 8
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014664
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 472 e-130
>Sscrofa_Chr09
|| Length = 153670197
Score = 472 bits (238), Expect = e-130
Identities = 258/262 (98%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 734 caggatcatgcacggaaaggcagtaagaaaggcctgtgaaccttatgaaagaagattgtg 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118089391 caggatcatgcacggaaaggcagtaagaaaggcctgtgaaccttatgaaagaagattgtg 118089450
Query: 794 atacaccatgtcaagatgacaaatttgttatcatgttagcctctagaaaattt-aaattc 852
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 118089451 atacaccatgtcaagatgacaaatttgttatcatgttagcctctagaaaatttaaaattc 118089510
Query: 853 acttcagaaaaatataccagccagaattttttgtaatgctacatgtataggctcttatca 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118089511 acttcagaaaaatataccagccagaattttttgtaatgctacatgtataggctcttatca 118089570
Query: 913 taatggcattatcacaatatttgatgtt-cagacatattgtaaagcctgtcttccagctc 971
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 118089571 taatggcattatcacaatatttgatgttccagacatattgtaaagcctgtcttccagctc 118089630
Query: 972 tgaagtaaaataatagcatgtc 993
|||||||||||| ||||||||
Sbjct: 118089631 tgaagtaaaatataagcatgtc 118089652
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 237 tagatgctgtaagagaagtaagaaagtattcctcagctcatgccattgaaaggagctcag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118060625 tagatgctgtaagagaagtaagaaagtattcctcagctcatgccattgaaaggagctcag 118060684
Query: 297 ctagcagacctgctgcctatgaacatacacaaatgaaactctttaggtctcaaagaaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118060685 ctagcagacctgctgcctatgaacatacacaaatgaaactctttaggtctcaaagaaatc 118060744
Query: 357 tttacatttctggattttcatta 379
|||||||||||||||||||||||
Sbjct: 118060745 tttacatttctggattttcatta 118060767
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 391 agtgttgagacgcctggttacccttattactcagctggcaaaagagttatcaaacaaagg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118062371 agtgttgagacgcctggttacccttattactcagctggcaaaagagttatcaaacaaagg 118062430
Query: 451 agtacttaaaagtcaagcagaaagtaccaacaaggctgccaaaaaattcatggaagagaa 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118062431 agtacttaaaagtcaagcagaaagtaccaacaaggctgccaaaaaattcatggaagagaa 118062490
Query: 511 tgaaagactaaaacgg 526
||||||||||||||||
Sbjct: 118062491 tgaaagactaaaacgg 118062506
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 526 gcttttgaaaaactatggcaaagaagaagatcacattttggaagaagaaaataaaaaact 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118067409 gcttttgaaaaactatggcaaagaagaagatcacattttggaagaagaaaataaaaaact 118067468
Query: 586 agtcgaagacaaggaaaaactgcaaactgaattaaagaaggtttcagatg 635
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118067469 agtcgaagacaaggaaaaactgcaaactgaattaaagaaggtttcagatg 118067518
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 137 agatggcagaagattttttcatttagcgtctggggtaaaattgcaactttctggaacaag 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118052410 agatggcagaagattttttcatttagcgtctggggtaaaattgcaactttctggaacaag 118052469
Query: 197 gcttttcttactattatagtcctattgattgttctatttctag 239
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118052470 gcttttcttactattatagtcctattgattgttctatttctag 118052512
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 635 gccctttctaaggcacaaaacgatgtgatgacaatgaaggtgcaatcagagcgactttca 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118084233 gccctttctaaggcacaaaacgatgtgatgacaatgaaggtgcaatcagagcgactttca 118084292
Query: 695 aaagagtacgacttactcctgaaagaacactcagaacttcagg 737
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118084293 aaagagtacgacttactcctgaaagaacactcagaacttcagg 118084335
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 48 tgacacttcagtgggcggctgttgcgacttttctttacgctgaaataggactcattttaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118047488 tgacacttcagtgggcggctgttgcgacttttctttacgctgaaataggactcattttaa 118047547
Query: 108 tcttctgtctaccttttattcctcctcagag 138
|||||||||||||||||||||||||||||||
Sbjct: 118047548 tcttctgtctaccttttattcctcctcagag 118047578
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,672,283
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 7
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)