Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850914.1| PREDICTED: hypothetical protein XP_845821 [Cani... 285 3e-77
>ref|XP_850914.1| PREDICTED: hypothetical protein XP_845821 [Canis familiaris].
Length = 206
Score = 285 bits (730), Expect = 3e-77
Identities = 146/208 (70%), Positives = 162/208 (77%)
Frame = +1
Query: 103 MATQDATPSSQWEGSNALDLPSACDIRDYVLQRPXXXXXXXXXXXXXXXXFPCSSDVDPD 282
MATQ+ATP SQ E S+ LDLPS DIRDY+LQRP PCSSDVD D
Sbjct: 1 MATQEATPGSQSEESSVLDLPSVYDIRDYILQRPQQEAGSEAFSSEEALSIPCSSDVDSD 60
Query: 283 TSNLNTEQSDSWTSENFWLNHPVKGWPETQTEDDGLRESLDRFYEVFGHSQPASGNPLST 462
TSNLNTEQ DS TSENFWL+ V+G ET+ EDDGLR+SLDRFYE+F H PA+ NPLST
Sbjct: 61 TSNLNTEQHDSGTSENFWLDPSVQGQTETKAEDDGLRKSLDRFYEMFDHPHPAARNPLST 120
Query: 463 SVCQCLSQKISELKSQGNQEYTLRSFQLARVIFNRDGCSVLQRHSRDAHFCPPGEGEESA 642
SVCQCLSQKI+ELK Q +Q+Y LRSFQ+ARV+F+RDGCSVLQRHS+DAHF P GEG S
Sbjct: 121 SVCQCLSQKINELKGQESQKYALRSFQMARVVFSRDGCSVLQRHSKDAHFYPVGEG--SV 178
Query: 643 SLEDGKLTPGLSKDIIHFLLQQNVMKDL 726
LED K TPGLSKDIIHFLLQQNVMKDL
Sbjct: 179 LLEDEKPTPGLSKDIIHFLLQQNVMKDL 206
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,626,102
Number of extensions: 1283139
Number of successful extensions: 4154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4147
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014692
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040017.1| hypothetical protein LOC615129 [Bos taurus]. 301 5e-82
>ref|NP_001040017.1| hypothetical protein LOC615129 [Bos taurus].
Length = 206
Score = 301 bits (771), Expect = 5e-82
Identities = 152/207 (73%), Positives = 167/207 (80%)
Frame = +1
Query: 103 MATQDATPSSQWEGSNALDLPSACDIRDYVLQRPXXXXXXXXXXXXXXXXFPCSSDVDPD 282
MATQ+ TP SQ E SNALDLPSA DIRDYVLQRP PCSSDVDPD
Sbjct: 1 MATQETTPGSQTEESNALDLPSAYDIRDYVLQRPSQQTNSEAFSSEEACSIPCSSDVDPD 60
Query: 283 TSNLNTEQSDSWTSENFWLNHPVKGWPETQTEDDGLRESLDRFYEVFGHSQPASGNPLST 462
+SNLNTEQ+DSWTSENFW VKG PET+ EDDGLR+SLD+FYEVFG+ QPASGN LST
Sbjct: 61 SSNLNTEQNDSWTSENFWFYPSVKGQPETKEEDDGLRKSLDKFYEVFGNPQPASGNSLST 120
Query: 463 SVCQCLSQKISELKSQGNQEYTLRSFQLARVIFNRDGCSVLQRHSRDAHFCPPGEGEESA 642
SVCQCLSQKI+ELK Q NQ YTLRSFQ+ARVIFN++GCS+LQ+HSRDAHF P EG S
Sbjct: 121 SVCQCLSQKINELKDQENQTYTLRSFQMARVIFNQNGCSILQKHSRDAHFYPVREG--ST 178
Query: 643 SLEDGKLTPGLSKDIIHFLLQQNVMKD 723
SL+D KLTPGLSKDIIHFLLQQN+MKD
Sbjct: 179 SLQDEKLTPGLSKDIIHFLLQQNLMKD 205
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,928,344
Number of extensions: 1244989
Number of successful extensions: 4018
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4007
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,427,258
Number of extensions: 804314
Number of successful extensions: 2735
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2734
Number of HSP's successfully gapped: 0
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082913.1| hypothetical protein LOC73747 [Mus musculus]. 217 9e-57
>ref|NP_082913.1| hypothetical protein LOC73747 [Mus musculus].
Length = 206
Score = 217 bits (553), Expect = 9e-57
Identities = 113/207 (54%), Positives = 138/207 (66%)
Frame = +1
Query: 103 MATQDATPSSQWEGSNALDLPSACDIRDYVLQRPXXXXXXXXXXXXXXXXFPCSSDVDPD 282
M +Q ATPSS S LDLP+ CD Y + F SS DPD
Sbjct: 1 MESQAATPSSLSGESCTLDLPAVCDTSSYEASQRVSQGSSNSLSSLESHPFLSSSTTDPD 60
Query: 283 TSNLNTEQSDSWTSENFWLNHPVKGWPETQTEDDGLRESLDRFYEVFGHSQPASGNPLST 462
+++LNTEQ SW SENFWL+ KG ET E+DGLR+SLDRFYE F H P SG+PLS
Sbjct: 61 SNSLNTEQKGSWDSENFWLDPSSKGQLETNEEEDGLRKSLDRFYEAFAHPLPGSGDPLSA 120
Query: 463 SVCQCLSQKISELKSQGNQEYTLRSFQLARVIFNRDGCSVLQRHSRDAHFCPPGEGEESA 642
SVCQCLSQ ISEL+ Q +Q Y LRSFQ+A+VIF+RDGCS+LQRHSRD F P +E +
Sbjct: 121 SVCQCLSQTISELEGQESQRYALRSFQMAQVIFSRDGCSILQRHSRDTRFYP--LEQEGS 178
Query: 643 SLEDGKLTPGLSKDIIHFLLQQNVMKD 723
S++D + TPGLS+++I FLL+Q VMKD
Sbjct: 179 SVDDEEPTPGLSREVIRFLLEQTVMKD 205
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,295,765
Number of extensions: 1047353
Number of successful extensions: 3271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689717.2| hypothetical protein LOC149840 [Homo sapiens]. 271 6e-73
>ref|NP_689717.2| hypothetical protein LOC149840 [Homo sapiens].
Length = 205
Score = 271 bits (693), Expect = 6e-73
Identities = 141/208 (67%), Positives = 158/208 (75%)
Frame = +1
Query: 103 MATQDATPSSQWEGSNALDLPSACDIRDYVLQRPXXXXXXXXXXXXXXXXFPCSSDVDPD 282
MA +DAT S E S+ALDLPSACDIRDYVLQ P FP SSDVDPD
Sbjct: 1 MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPD 60
Query: 283 TSNLNTEQSDSWTSENFWLNHPVKGWPETQTEDDGLRESLDRFYEVFGHSQPASGNPLST 462
TSNLN EQ++SWT+ENFWL+ VKG E + EDDGLR+SLDRFYE+FGH QP S N LS
Sbjct: 61 TSNLNIEQNNSWTAENFWLDPAVKGQSEKE-EDDGLRKSLDRFYEMFGHPQPGSANSLSA 119
Query: 463 SVCQCLSQKISELKSQGNQEYTLRSFQLARVIFNRDGCSVLQRHSRDAHFCPPGEGEESA 642
SVC+CLSQKI++L+ Q +Q+Y LRSFQ+ARVIFNRDGCSVLQRHSRD HF P EG S
Sbjct: 120 SVCKCLSQKITQLRGQESQKYALRSFQMARVIFNRDGCSVLQRHSRDTHFYPLEEG--ST 177
Query: 643 SLEDGKLTPGLSKDIIHFLLQQNVMKDL 726
SL+D K PGLSKDI HFLLQQNVMKDL
Sbjct: 178 SLDDEKPNPGLSKDITHFLLQQNVMKDL 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,865,823
Number of extensions: 1258940
Number of successful extensions: 4012
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4004
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014692
(911 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1243 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1243 bits (627), Expect = 0.0
Identities = 634/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 278 cagacaccagtaacctaaatactgaacagagtgattcctggacctctgagaacttctggc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15739106 cagacaccagtaacctaaatactgaacagagtgattcctggacctctgagaacttctggc 15739047
Query: 338 ttaaccatcctgtgaagggctggccagagacccagacagaggatgatggacttcgggaat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15739046 ttaaccatcctgtgaagggctggccagagacccagacagaggatgatggacttcgggaat 15738987
Query: 398 ctctggatagattctatgaagtgtttggccattctcagccagcctctggaaatccactct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738986 ctctggatagattctatgaagtgtttggccattctcagccagcctctggaaatccactct 15738927
Query: 458 ccacatctgtctgccagtgcctgtctcagaaaatcagcgaactgaagagccaggggaacc 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738926 ccacatctgtctgccagtgcctgtctcagaaaatcagcgaactgaagagccaggggaacc 15738867
Query: 518 aagagtacaccctccgtagttttcaactggcccgggtcatcttcaaccgggacggctgct 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738866 aagagtacaccctccgtagttttcaactggcccgggtcatcttcaaccgggacggctgct 15738807
Query: 578 ccgtcctacagaggcattccagggacgctcacttctgcccaccaggagaaggagaagaaa 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738806 ccgtcctacagaggcattccagggacgctcacttctgcccaccaggagaaggagaagaaa 15738747
Query: 638 gtgcatctctggaggatggaaaactgaccccaggactttcaaaagatatcattcactttc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738746 gtgcatctctggaggatggaaaactgaccccaggactttcaaaagatatcattcactttc 15738687
Query: 698 tcttgcagcagaacgtgatgaaagacctataactggtgcctggtggtgagagcaggcact 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738686 tcttgcagcagaacgtgatgaaagacctataactggtgcctggtggtgagagcaggcact 15738627
Query: 758 tggaggggagcccagaggcggatactgttggtgctccacccagaagttctcaggccaagt 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738626 tggaggggagcccagaggcggatactgttggtgctccacccagaagttctcaggccaagt 15738567
Query: 818 aaatgctttgcaagagaaggctggcatctgcgatctggtccagga-caagttcagcccaa 876
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 15738566 aaatgctttgcaagagaaggctggcatctgcgatctggtccaggagcaagttcagcccaa 15738507
Query: 877 atggagaaccagcagtgtctgggattctgttgcct 911
|||||||||||||||||||||||||||||||||||
Sbjct: 15738506 atggagaaccagcagtgtctgggattctgttgcct 15738472
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 98 gggcgatggccacccaggatgccaccccaagtagccagtgggagggaagcaatgctttgg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15704462 gggcgatggccacccaggatgccaccccaagtagccagtgggagggaagcaatgctttgg 15704521
Query: 158 acctgccatccgcttgtgacataagggattacgtgttgcagagacccagccaggaggcca 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15704522 acctgccatccgcttgtgacataagggattacgtgttgcagagacccagccaggaggcca 15704581
Query: 218 gcagcgaggctttcagttctgaggaagccctttcatttccttgctcttctgatgtggatc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15704582 gcagcgaggctttcagttctgaggaagccctttcatttccttgctcttctgatgtggatc 15704641
Query: 278 cag 280
|||
Sbjct: 15704642 cag 15704644
Score = 159 bits (80), Expect = 3e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 1 gccgctgctgtttcggggtggtgagtgtcagtgggccctggcgacttttctaggtcagtt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 15555813 gccgctgctgtttcggggtggtgagtgtcagtgggccctggcgatttttctaggtcagtt 15555754
Query: 61 ttcgttgcagacgctcgagtgcct 84
||||||||||||||||||||||||
Sbjct: 15555753 ttcgttgcagacgctcgagtgcct 15555730
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,870,660
Number of extensions: 258
Number of successful extensions: 258
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 3
Length of query: 911
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 890
Effective length of database: 2,808,413,156
Effective search space: 2499487708840
Effective search space used: 2499487708840
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)