Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536080.2| PREDICTED: similar to Receptor-type tyrosine-pr... 72 1e-12
>ref|XP_536080.2| PREDICTED: similar to Receptor-type tyrosine-protein
phosphatase-like N precursor (R-PTP-N) (PTP IA-2) (Islet
cell antigen 512) (ICA 512) (Islet cell autoantigen 3)
[Canis familiaris].
Length = 1066
Score = 71.6 bits (174), Expect = 1e-12
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 23/130 (17%)
Frame = +3
Query: 81 GSQRAEPGRMQCLL---WPGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--- 242
GS+RAEPGRM+ PGGS G +S GGCS IS H
Sbjct: 89 GSERAEPGRMRRPRRPGGPGGSGGLRLLLCLLLLSSRPGGCSAISAHGCLFDRRLCSHLE 148
Query: 243 -----------------LWPLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMG 371
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M
Sbjct: 149 VCIQDGLFGQCQVGVGQARPLLQVTSPVLQRLQSVLRQLMSQGLSWHDDLTQYVISQEME 208
Query: 372 HISQLHPQDP 401
I +L P +P
Sbjct: 209 RIPRLRPPEP 218
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,112,179
Number of extensions: 1227474
Number of successful extensions: 5092
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5081
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014713
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071365.1| regulated endocrine-specific protein 18 [Bos... 244 8e-65
Alignment gi|NP_001068599.1| receptor-type tyrosine-protein phosphatase-l... 60 4e-09
Alignment gi|XP_002687034.1| PREDICTED: KIAA0387-like [Bos taurus]. 49 5e-06
Alignment gi|XP_001788898.1| PREDICTED: protein tyrosine phosphatase, rec... 49 5e-06
>ref|NP_001071365.1| regulated endocrine-specific protein 18 [Bos taurus].
Length = 174
Score = 244 bits (623), Expect = 8e-65
Identities = 119/174 (68%), Positives = 131/174 (75%)
Frame = +3
Query: 108 MQCLLWPGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXXLWPLQGFTTPIFQHL 287
MQ LW GG +G NS GG SD+SGHD LWPL GFTTP+F+HL
Sbjct: 1 MQRQLWLGGFRGLWLLVCFLLLNSRLGGSSDVSGHDGQSQVGVGQLWPLPGFTTPVFKHL 60
Query: 288 QVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGARGKQEE 467
QV+LQQI+P LFWKDDMTQ VMTQKMG S+LHP+DPCVR G AA PT+T G RGKQEE
Sbjct: 61 QVLLQQIMPHDLFWKDDMTQEVMTQKMGRTSKLHPEDPCVRSGPAAFPTRTPGVRGKQEE 120
Query: 468 KLRLLFPKSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSHTVGHNLVAD 629
KLRLLFPKSP+VKVN+DQCFTSKVV+K LK EVA P KGFFES TVGHNLVAD
Sbjct: 121 KLRLLFPKSPMVKVNKDQCFTSKVVSKVLKHEVANPVKGFFESPPTVGHNLVAD 174
>ref|NP_001068599.1| receptor-type tyrosine-protein phosphatase-like N precursor [Bos
taurus].
Length = 979
Score = 59.7 bits (143), Expect = 4e-09
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Frame = +3
Query: 126 PGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------L 245
PGGS G S GGC+ IS H
Sbjct: 10 PGGSGGLRVLLCLLLLGSRPGGCNAISAHGCLFDRRLCSHLEVCIQDGLFGQCQVGVGQA 69
Query: 246 WPLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDP 401
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M I +L P +P
Sbjct: 70 RPLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQYVISQEMERIPRLRPPEP 121
>ref|XP_002687034.1| PREDICTED: KIAA0387-like [Bos taurus].
Length = 961
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 273 IFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGAR 452
+ QHL LQ++ GL W+DD TQ VM +++ + Q HP+ P +A+SP +++
Sbjct: 40 VLQHLTATLQKLSRTGLTWQDDSTQRVMARELASLPQTHPRHP-----EASSPARSSKQS 94
Query: 453 GKQEEKLRL 479
E L L
Sbjct: 95 VPDERSLSL 103
>ref|XP_001788898.1| PREDICTED: protein tyrosine phosphatase, receptor type, N
polypeptide 2 [Bos taurus].
Length = 961
Score = 49.3 bits (116), Expect = 5e-06
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 273 IFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGAR 452
+ QHL LQ++ GL W+DD TQ VM +++ + Q HP+ P +A+SP +++
Sbjct: 40 VLQHLTATLQKLSRTGLTWQDDSTQRVMARELASLPQTHPRHP-----EASSPARSSKQS 94
Query: 453 GKQEEKLRL 479
E L L
Sbjct: 95 VPDERSLSL 103
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,382,100
Number of extensions: 1193473
Number of successful extensions: 5381
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5366
Number of HSP's successfully gapped: 5
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133719.1| PREDICTED: regulated endocrine-specific prot... 318 3e-87
Alignment gi|XP_003133718.1| PREDICTED: receptor-type tyrosine-protein ph... 60 1e-09
Alignment gi|XP_003133717.1| PREDICTED: receptor-type tyrosine-protein ph... 60 1e-09
>ref|XP_003133719.1| PREDICTED: regulated endocrine-specific protein 18-like [Sus
scrofa].
Length = 174
Score = 318 bits (814), Expect = 3e-87
Identities = 155/174 (89%), Positives = 155/174 (89%)
Frame = +3
Query: 108 MQCLLWPGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXXLWPLQGFTTPIFQHL 287
MQCLLWPGGSQG NSHTGGCSDISGHD LWPLQGFTTPIFQHL
Sbjct: 1 MQCLLWPGGSQGLWLLLCFLLLNSHTGGCSDISGHDGQGQVGVGQLWPLQGFTTPIFQHL 60
Query: 288 QVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGARGKQEE 467
QVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGARGKQEE
Sbjct: 61 QVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGARGKQEE 120
Query: 468 KLRLLFPKSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSHTVGHNLVAD 629
KLRLLFPKSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSHTVGHNLVAD
Sbjct: 121 KLRLLFPKSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSHTVGHNLVAD 174
>ref|XP_003133718.1| PREDICTED: receptor-type tyrosine-protein phosphatase-like N
isoform 2 [Sus scrofa].
Length = 950
Score = 60.5 bits (145), Expect = 1e-09
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Frame = +3
Query: 126 PGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------L 245
PGGS G S GGC+ IS H
Sbjct: 10 PGGSGGLRVLLCLLLLGSRLGGCNAISAHGCLFDRRLCSHLEVCIQDGLFGQCQVGVGQA 69
Query: 246 WPLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVR 410
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M I +L P +P R
Sbjct: 70 RPLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQYVISQEMERIPRLRPPEPPAR 124
>ref|XP_003133717.1| PREDICTED: receptor-type tyrosine-protein phosphatase-like N
isoform 1 [Sus scrofa].
Length = 979
Score = 60.5 bits (145), Expect = 1e-09
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Frame = +3
Query: 126 PGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------L 245
PGGS G S GGC+ IS H
Sbjct: 10 PGGSGGLRVLLCLLLLGSRLGGCNAISAHGCLFDRRLCSHLEVCIQDGLFGQCQVGVGQA 69
Query: 246 WPLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVR 410
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M I +L P +P R
Sbjct: 70 RPLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQYVISQEMERIPRLRPPEPPAR 124
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,502,308
Number of extensions: 773588
Number of successful extensions: 3482
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3473
Number of HSP's successfully gapped: 5
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033075.1| regulated endocrine-specific protein 18 [Mus mu... 172 4e-43
Alignment gi|NP_033011.2| receptor-type tyrosine-protein phosphatase-like... 59 4e-09
>ref|NP_033075.1| regulated endocrine-specific protein 18 [Mus musculus].
Length = 175
Score = 172 bits (435), Expect = 4e-43
Identities = 88/175 (50%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Frame = +3
Query: 108 MQCLLWPGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXXLWPLQGFTTPIFQHL 287
MQ L P GS S G CSDI+ HD LW QG +FQ+L
Sbjct: 1 MQSSLKPAGSGHLQLLVCFLLLYSRPGSCSDINAHDGQGQVGSEQLWTFQGLIASVFQYL 60
Query: 288 QVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAASPTKTTGARGKQEE 467
Q++ QIVP+G+FW DD+ +MT+K+ H+S+LHPQ PC + +A SPT G R KQEE
Sbjct: 61 QLIFHQIVPEGMFWADDIAYELMTKKVEHLSRLHPQYPCRKDMKAVSPTANAGVRSKQEE 120
Query: 468 KLRLLFP-KSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSHTVGHNLVAD 629
KL+LL P KSP VKVNRD+CFT+KV+ KA K+E P KGFF TVG NLVAD
Sbjct: 121 KLQLLSPQKSPTVKVNRDRCFTTKVIPKATKQEATHPTKGFFGPFPTVGLNLVAD 175
>ref|NP_033011.2| receptor-type tyrosine-protein phosphatase-like N [Mus musculus].
Length = 981
Score = 59.3 bits (142), Expect = 4e-09
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Frame = +3
Query: 129 GGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------LW 248
GGS G + GGCS IS H
Sbjct: 14 GGSGGLRLLVCLLLLSGRPGGCSAISAHGCLFDRRLCSHLEVCIQDGLFGQCQAGVGQAR 73
Query: 249 PLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAAS 428
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ+V++Q+M I +L P +P R
Sbjct: 74 PLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQHVISQEMERIPRLRPPEPHPRDRSGLV 133
Query: 429 PTK 437
P K
Sbjct: 134 PRK 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,790,345
Number of extensions: 989817
Number of successful extensions: 4244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4222
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007090.3| regulated endocrine-specific protein 18 [Hom... 201 6e-52
Alignment gi|NP_001186692.1| receptor-type tyrosine-protein phosphatase-l... 60 4e-09
Alignment gi|NP_002837.1| receptor-type tyrosine-protein phosphatase-like... 60 4e-09
>ref|NP_001007090.3| regulated endocrine-specific protein 18 [Homo sapiens].
Length = 228
Score = 201 bits (512), Expect = 6e-52
Identities = 101/180 (56%), Positives = 121/180 (67%)
Frame = +3
Query: 63 FSATEVGSQRAEPGRMQCLLWPGGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX 242
F+ T GS+RAEPGR+Q LWPG S+G NS GGCSD S HD
Sbjct: 28 FTETWPGSERAEPGRIQHPLWPGSSEGLQLLVCFLLLNSCPGGCSDTSAHDGQDQVGVGQ 87
Query: 243 LWPLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQA 422
LWPLQGF TP+FQHLQVVLQQI+PQGLFWKDD+TQ+ M QKM H S+LHPQ+PC++ G+A
Sbjct: 88 LWPLQGFATPVFQHLQVVLQQIIPQGLFWKDDITQDAMIQKMEHASRLHPQEPCLKDGKA 147
Query: 423 ASPTKTTGARGKQEEKLRLLFPKSPVVKVNRDQCFTSKVVAKALKREVATPAKGFFESSH 602
PTKTT +SP+ KVNRDQCFTS+VV+KALK+EVA P K + S+
Sbjct: 148 LFPTKTT---------------ESPLAKVNRDQCFTSEVVSKALKQEVANPVKITYRCSY 192
>ref|NP_001186692.1| receptor-type tyrosine-protein phosphatase-like N isoform 2
precursor [Homo sapiens].
Length = 950
Score = 59.7 bits (143), Expect = 4e-09
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Frame = +3
Query: 129 GGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------LW 248
GGS G +S GGCS +S H
Sbjct: 11 GGSGGLRLLLCLLLLSSRPGGCSAVSAHGCLFDRRLCSHLEVCIQDGLFGQCQVGVGQAR 70
Query: 249 PLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAAS 428
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M I +L P +P R +
Sbjct: 71 PLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQYVISQEMERIPRLRPPEPRPRDRSGLA 130
Query: 429 PTKTTGARGK 458
P K G G+
Sbjct: 131 P-KRPGPAGE 139
>ref|NP_002837.1| receptor-type tyrosine-protein phosphatase-like N isoform 1
precursor [Homo sapiens].
Length = 979
Score = 59.7 bits (143), Expect = 4e-09
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 20/130 (15%)
Frame = +3
Query: 129 GGSQGXXXXXXXXXXNSHTGGCSDISGHDXXXXXXXXX--------------------LW 248
GGS G +S GGCS +S H
Sbjct: 11 GGSGGLRLLLCLLLLSSRPGGCSAVSAHGCLFDRRLCSHLEVCIQDGLFGQCQVGVGQAR 70
Query: 249 PLQGFTTPIFQHLQVVLQQIVPQGLFWKDDMTQNVMTQKMGHISQLHPQDPCVRVGQAAS 428
PL T+P+ Q LQ VL+Q++ QGL W DD+TQ V++Q+M I +L P +P R +
Sbjct: 71 PLLQVTSPVLQRLQGVLRQLMSQGLSWHDDLTQYVISQEMERIPRLRPPEPRPRDRSGLA 130
Query: 429 PTKTTGARGK 458
P K G G+
Sbjct: 131 P-KRPGPAGE 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,231,820
Number of extensions: 1199332
Number of successful extensions: 5047
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5033
Number of HSP's successfully gapped: 5
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014713
(926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 666 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 666 bits (336), Expect = 0.0
Identities = 346/348 (99%), Gaps = 1/348 (0%)
Strand = Plus / Minus
Query: 580 agggcttctttgagtcatcccacaccgtgggccacaaccttgtcgctgactgagacctcg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134398173 agggcttctttgagtcatcccacaccgtgggccacaaccttgtcgctgactgagacctcg 134398114
Query: 640 tgcgaagccttttgccccagtgcccttccctttgccctcccaaggggcagttccagcatg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134398113 tgcgaagccttttgccccagtgcccttccctttgccctcccaaggggcagttccagcatg 134398054
Query: 700 acctgaatctggatcattaaagtgactttcacgcaaactctctgtgacttgccctgaggc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134398053 acctgaatctggatcattaaagtgactttcacgcaaactctctgtgacttgccctgaggc 134397994
Query: 760 aggatgggtgatgttttgacctggccaggacctctgacctgagagtggggggaccagaac 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134397993 aggatgggtgatgttttgacctggccaggacctctgacctgagagtggggggaccagaac 134397934
Query: 820 agggggatggggtgaggagagcacagttgctccttactgctagaaggctgcctctgtctt 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134397933 agggggatggggtgaggagagcacagttgctccttactgctagaaggctgcctctgtctt 134397874
Query: 880 gtttttcttccagtgacca-tccaaaagtgggaagagcgagggtgggc 926
||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 134397873 gtttttcttccagtgaccattccagaagtgggaagagcgagggtgggc 134397826
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 317 aggtttgttctggaaggatgacatgacccagaatgtgatgacccagaagatggggcatat 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134401185 aggtttgttctggaaggatgacatgacccagaatgtgatgacccagaagatggggcatat 134401126
Query: 377 cagccaactccacccccaggatccatgtgtgagggttgggcaggcagcctctcccaccaa 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134401125 cagccaactccacccccaggatccatgtgtgagggttgggcaggcagcctctcccaccaa 134401066
Query: 437 aaccactggggcaagg 452
||||||||||||||||
Sbjct: 134401065 aaccactggggcaagg 134401050
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1 ttcagtctggccagcgggtgggaagcgacagccccgctcaatccctccagcaactgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134404835 ttcagtctggccagcgggtgggaagcgacagccccgctcaatccctccagcaactgtctc 134404776
Query: 61 tcttctctgcgactgaagtggggagccagcgcgccgagcccgggaggatgcag 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134404775 tcttctctgcgactgaagtggggagccagcgcgccgagcccgggaggatgcag 134404723
Score = 214 bits (108), Expect = 6e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 213 gatggtcagggccaagtgggagtggggcagctctggcccctccaaggatttaccaccccg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134402916 gatggtcagggccaagtgggagtggggcagctctggcccctccaaggatttaccaccccg 134402857
Query: 273 atcttccagcatttgcaagttgtactccagcagattgtgccccaaggt 320
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134402856 atcttccagcatttgcaagttgtactccagcagattgtgccccaaggt 134402809
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 490 agagcccagtggtcaaggtgaacagggatcagtgctttacctccaaagtggttgcaaagg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134400670 agagcccagtggtcaaggtgaacagggatcagtgctttacctccaaagtggttgcaaagg 134400611
Query: 550 ccctgaaacgagaggtggccactcctgccaagg 582
|||||||||||||||||||||||||||||||||
Sbjct: 134400610 ccctgaaacgagaggtggccactcctgccaagg 134400578
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 450 aggggcaaacaagaggagaaacttcgactcctattccccaag 491
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134400830 aggggcaaacaagaggagaaacttcgactcctattccccaag 134400789
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 174 aacagccacactgggggctgcagcgacattagtggccacg 213
||||||||||||||||||||||||||||||||||||||||
Sbjct: 134404662 aacagccacactgggggctgcagcgacattagtggccacg 134404623
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,400,215
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 7
Length of query: 926
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 905
Effective length of database: 2,808,413,156
Effective search space: 2541613906180
Effective search space used: 2541613906180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)