Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124522.1| prostaglandin E synthase 2 [Canis lupus fami... 438 e-123
>ref|NP_001124522.1| prostaglandin E synthase 2 [Canis lupus familiaris].
Length = 372
Score = 438 bits (1127), Expect = e-123
Identities = 224/326 (68%), Positives = 234/326 (71%)
Frame = +2
Query: 32 MAHAARVLWPSGRALAWRLGGRPSLRLPEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 211
MA AR LWP ALAWRLGGR LP S
Sbjct: 1 MAQVARALWPVRYALAWRLGGRLPPGLPAHSRAGFAGAAGGQGPAATARKGSPRLLGAAA 60
Query: 212 XXXXXXXXXYHTVRWHLRAQDLRAEXXXXXXXXXXXXXXXXYQYKTCPFCSKVRAFLDFH 391
YHT RWHLRAQ LRA+ YQYKTCPFCSKVRAFLDFH
Sbjct: 61 LALGGVLGLYHTARWHLRAQHLRAQRPAAQLSLSSRLQLTLYQYKTCPFCSKVRAFLDFH 120
Query: 392 ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLE 571
ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEG+SLQQLNDSSVIISALKTYLVSGQPLE
Sbjct: 121 ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGESLQQLNDSSVIISALKTYLVSGQPLE 180
Query: 572 DIVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV 751
DI+TYYPPMKAVN+QGKEVTEFCNKYWLMLDEKEAQ +YGGKEARTEEMKWRQWADDWLV
Sbjct: 181 DIITYYPPMKAVNDQGKEVTEFCNKYWLMLDEKEAQHLYGGKEARTEEMKWRQWADDWLV 240
Query: 752 HLISPNVYRTPAEALASFDYIVKEGNFGTVEXXXXXXXXXXXXXLISKRLQSRHHLQDDV 931
HLISPNVYRTPAEALASFDYIV+EG FG VE ISKRL+SRHHLQDDV
Sbjct: 241 HLISPNVYRTPAEALASFDYIVREGKFGAVEGAVAKYMGAAAMYFISKRLKSRHHLQDDV 300
Query: 932 REDLYEAANKWVGTVGQRPALLGGPK 1009
REDLYEAA+KWV VG+ +GG K
Sbjct: 301 REDLYEAADKWVAAVGKDRPFMGGQK 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,958,421
Number of extensions: 1082392
Number of successful extensions: 5233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5226
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014764
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160026.1| prostaglandin E synthase 2 [Bos taurus]. 457 e-129
>ref|NP_001160026.1| prostaglandin E synthase 2 [Bos taurus].
Length = 372
Score = 457 bits (1176), Expect = e-129
Identities = 231/326 (70%), Positives = 241/326 (73%)
Frame = +2
Query: 32 MAHAARVLWPSGRALAWRLGGRPSLRLPEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 211
MAHA R LWP GRALAWRLG RP+L L QS
Sbjct: 1 MAHAVRALWPHGRALAWRLGDRPALGLHAQSRAGFTGAAGGSGPAATARKGGPRLLGAAA 60
Query: 212 XXXXXXXXXYHTVRWHLRAQDLRAEXXXXXXXXXXXXXXXXYQYKTCPFCSKVRAFLDFH 391
YHT RWHLRAQDLRAE YQYKTCPFCSKVRAFLDFH
Sbjct: 61 LALGGALGLYHTARWHLRAQDLRAERSATQLSLSSRLQLTLYQYKTCPFCSKVRAFLDFH 120
Query: 392 ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLE 571
ALPYQVVEVNPVRRAEIKFSSYRKVPI++AQEG+SLQQLNDSSVIISALKTYLVSGQPL
Sbjct: 121 ALPYQVVEVNPVRRAEIKFSSYRKVPIVMAQEGESLQQLNDSSVIISALKTYLVSGQPLA 180
Query: 572 DIVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV 751
DI+TYYPPMKAVN+QGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV
Sbjct: 181 DIITYYPPMKAVNDQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV 240
Query: 752 HLISPNVYRTPAEALASFDYIVKEGNFGTVEXXXXXXXXXXXXXLISKRLQSRHHLQDDV 931
HLISPNVYRTPAEALASFDYIVKEGNFGTVE ISKRL+ RHHL+DDV
Sbjct: 241 HLISPNVYRTPAEALASFDYIVKEGNFGTVEGAMAKYMGAAAMYFISKRLKRRHHLRDDV 300
Query: 932 REDLYEAANKWVGTVGQRPALLGGPK 1009
REDLYEAANKWV VG+ +GG K
Sbjct: 301 REDLYEAANKWVAAVGKDRPFMGGQK 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,225,676
Number of extensions: 1042745
Number of successful extensions: 4907
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4897
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927971.1| PREDICTED: prostaglandin E synthase 2 [Sus s... 488 e-138
>ref|XP_001927971.1| PREDICTED: prostaglandin E synthase 2 [Sus scrofa].
Length = 372
Score = 488 bits (1257), Expect = e-138
Identities = 249/326 (76%), Positives = 252/326 (77%)
Frame = +2
Query: 32 MAHAARVLWPSGRALAWRLGGRPSLRLPEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 211
MAHAARVLWPSGRALAWRLGGRPSLRLPEQS
Sbjct: 1 MAHAARVLWPSGRALAWRLGGRPSLRLPEQSRAGFTGAAGGPGPTATTRKGGPRLLGAAA 60
Query: 212 XXXXXXXXXYHTVRWHLRAQDLRAEXXXXXXXXXXXXXXXXYQYKTCPFCSKVRAFLDFH 391
YHTVRWHLRAQDLRAE YQYKTCPFCSKVRAFLDFH
Sbjct: 61 LALGGALGLYHTVRWHLRAQDLRAERTAAQLLLSSRLQLTLYQYKTCPFCSKVRAFLDFH 120
Query: 392 ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLE 571
ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLE
Sbjct: 121 ALPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLE 180
Query: 572 DIVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV 751
DIVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV
Sbjct: 181 DIVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLV 240
Query: 752 HLISPNVYRTPAEALASFDYIVKEGNFGTVEXXXXXXXXXXXXXLISKRLQSRHHLQDDV 931
HLISPNVYRTPAEALASFDYIVKEGNFGTVE LISKRL+SRHHLQDDV
Sbjct: 241 HLISPNVYRTPAEALASFDYIVKEGNFGTVEGAMAKYMGAAAMYLISKRLKSRHHLQDDV 300
Query: 932 REDLYEAANKWVGTVGQRPALLGGPK 1009
REDLYEAANKWV VG+ +GG K
Sbjct: 301 REDLYEAANKWVAAVGKDRPFMGGQK 326
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,763,869
Number of extensions: 678845
Number of successful extensions: 3304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3297
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598544.2| prostaglandin E synthase 2 [Mus musculus]. 417 e-117
>ref|NP_598544.2| prostaglandin E synthase 2 [Mus musculus].
Length = 384
Score = 417 bits (1072), Expect = e-117
Identities = 203/257 (78%), Positives = 216/257 (84%)
Frame = +2
Query: 239 YHTVRWHLRAQDLRAEXXXXXXXXXXXXXXXXYQYKTCPFCSKVRAFLDFHALPYQVVEV 418
YHTVRWH R+QDLRAE YQYKTCPFCSKVRAFLDFH+LPYQVVEV
Sbjct: 72 YHTVRWHQRSQDLRAERSAAQLPLSNSLQLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEV 131
Query: 419 NPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLEDIVTYYPPM 598
NPVRR EIKFSSYRKVPIL+AQEGDSLQQLNDSSVIISALKTYLVSGQPLE+++TYYPPM
Sbjct: 132 NPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLVSGQPLEEVITYYPPM 191
Query: 599 KAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLVHLISPNVYR 778
KA+N+QGKEVTEFCNKYWLMLDEKEAQ+MYGGKEARTEEMKWRQWADDWLVHLISPNVYR
Sbjct: 192 KAMNDQGKEVTEFCNKYWLMLDEKEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYR 251
Query: 779 TPAEALASFDYIVKEGNFGTVEXXXXXXXXXXXXXLISKRLQSRHHLQDDVREDLYEAAN 958
TPAEALASFDYIV+EG FG VE LISKRL+SRHHLQDDVR DLYEAAN
Sbjct: 252 TPAEALASFDYIVREGKFGAVEAAMAKYVGAAAMYLISKRLKSRHHLQDDVRVDLYEAAN 311
Query: 959 KWVGTVGQRPALLGGPK 1009
KWV VG+ +GG K
Sbjct: 312 KWVTAVGKDRPFMGGQK 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,647,690
Number of extensions: 852896
Number of successful extensions: 3700
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3694
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079348.1| prostaglandin E synthase 2 [Homo sapiens]. 428 e-120
>ref|NP_079348.1| prostaglandin E synthase 2 [Homo sapiens].
Length = 377
Score = 428 bits (1100), Expect = e-120
Identities = 219/325 (67%), Positives = 232/325 (71%)
Frame = +2
Query: 35 AHAARVLWPSGRALAWRLGGRPSLRLPEQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 214
A R LWP G ALAWRLGGRP LP QS
Sbjct: 5 ARVVRALWPGGCALAWRLGGRPQPLLPTQSRAGFAGAAGGPSPVAAARKGSPRLLGAAAL 64
Query: 215 XXXXXXXXYHTVRWHLRAQDLRAEXXXXXXXXXXXXXXXXYQYKTCPFCSKVRAFLDFHA 394
YHT RWHLRAQDL AE YQYKTCPFCSKVRAFLDFHA
Sbjct: 65 ALGGALGLYHTARWHLRAQDLHAERSAAQLSLSSRLQLTLYQYKTCPFCSKVRAFLDFHA 124
Query: 395 LPYQVVEVNPVRRAEIKFSSYRKVPILLAQEGDSLQQLNDSSVIISALKTYLVSGQPLED 574
LPYQVVEVNPVRRAEIKFSSYRKVPIL+AQEG+S QQLNDSSVIISALKTYLVSGQPLE+
Sbjct: 125 LPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEE 184
Query: 575 IVTYYPPMKAVNEQGKEVTEFCNKYWLMLDEKEAQRMYGGKEARTEEMKWRQWADDWLVH 754
I+TYYP MKAVNEQGKEVTEF NKYWLML+EKEAQ++YGGKEARTEEMKWRQWADDWLVH
Sbjct: 185 IITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADDWLVH 244
Query: 755 LISPNVYRTPAEALASFDYIVKEGNFGTVEXXXXXXXXXXXXXLISKRLQSRHHLQDDVR 934
LISPNVYRTP EALASFDYIV+EG FG VE LISKRL+SRH LQD+VR
Sbjct: 245 LISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVR 304
Query: 935 EDLYEAANKWVGTVGQRPALLGGPK 1009
EDLYEAA+KWV VG+ +GG K
Sbjct: 305 EDLYEAADKWVAAVGKDRPFMGGQK 329
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,919,392
Number of extensions: 1038977
Number of successful extensions: 4589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4576
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014764
(1059 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 398 e-108
Sscrofa_Chr02 62 7e-07
>Sscrofa_Chr01
|| Length = 315321322
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 299 cagctcttgctgtccagccgcctgcagctgactctataccagtacaagacgtgtccattc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302579905 cagctcttgctgtccagccgcctgcagctgactctataccagtacaagacgtgtccattc 302579846
Query: 359 tgcagcaaagtccgcgccttcctcgacttccacgccctgccctaccaggtggtggaggtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302579845 tgcagcaaagtccgcgccttcctcgacttccacgccctgccctaccaggtggtggaggtg 302579786
Query: 419 aaccctgtccgcagggccgagatcaagttctcctcctacaggaaggtgcccatcctgctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302579785 aaccctgtccgcagggccgagatcaagttctcctcctacaggaaggtgcccatcctgctg 302579726
Query: 479 gcccaggaaggagacagcttg 499
|||||||||||||||||||||
Sbjct: 302579725 gcccaggaaggagacagcttg 302579705
Score = 392 bits (198), Expect = e-106
Identities = 201/202 (99%)
Strand = Plus / Minus
Query: 709 agaggagatgaagtggcggcagtgggcagatgactggctggtgcacctgatctcccccaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302578235 agaggagatgaagtggcggcagtgggcagatgactggctggtgcacctgatctcccccaa 302578176
Query: 769 cgtgtaccgcacgccggccgaggccctggcctccttcgactacattgtcaaggagggcaa 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302578175 cgtgtaccgcacgccggccgaggccctggcctccttcgactacattgtcaaggagggcaa 302578116
Query: 829 tttcgggacggtggagggcgccatggccaagtacatgggcgcagctgccatgtacctcat 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302578115 tttcgggacggtggagggcgccatggccaagtacatgggcgcagctgccatgtacctcat 302578056
Query: 889 cagcaagcggctccagagcagg 910
||||||||||||| ||||||||
Sbjct: 302578055 cagcaagcggctcaagagcagg 302578034
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 2 gcgccctcccgcggtgccggcgaaacgaacatggcccatgctgcacgggttctctggccc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302581335 gcgccctcccgcggtgccggcgaaacgaacatggcccatgctgcacgggttctctggccc 302581276
Query: 62 agcgggcgcgccctggcctggagactgggcggtcgtccctctctaagactccccgagcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302581275 agcgggcgcgccctggcctggagactgggcggtcgtccctctctaagactccccgagcag 302581216
Query: 122 agccgggcgggcttcaccggagcggcgggaggcccaggccccaccgccaccacccgcaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302581215 agccgggcgggcttcaccggagcggcgggaggcccaggccccaccgccaccacccgcaa 302581157
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 558 ggcagcccctggaagacatcgtcacctactacccgcccatgaaggctgtcaacgagcagg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302578654 ggcagcccctggaagacatcgtcacctactacccgcccatgaaggctgtcaacgagcagg 302578595
Query: 618 gcaaggaggtgaccgagttctgcaacaaatactggctcatgctggatgagaaggaggccc 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302578594 gcaaggaggtgaccgagttctgcaacaaatactggctcatgctggatgagaaggaggccc 302578535
Query: 678 agcggatgtacggtggaaaggaggcgaggac 708
|||||||||||||||||||||||||||||||
Sbjct: 302578534 agcggatgtacggtggaaaggaggcgaggac 302578504
Score = 159 bits (80), Expect = 4e-36
Identities = 115/124 (92%), Gaps = 2/124 (1%)
Strand = Plus / Minus
Query: 907 caggcaccacctccaggatgacgtccgcgaggacctctacgaggctgccaacaagtgggt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302577711 caggcaccacctccaggatgacgtccgcgaggacctctacgaggctgccaacaagtgggt 302577652
Query: 967 gggaaccgttggccaaagaccggcccttcttggggggccaaaagcccaaccctggctgat 1026
|| | | | ||| |||||||||||||||| |||||||||| ||||| || ||||||||||
Sbjct: 302577651 ggcagctg-tgggcaaagaccggcccttcatggggggccagaagccgaa-cctggctgat 302577594
Query: 1027 ttgg 1030
||||
Sbjct: 302577593 ttgg 302577590
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 237 tgtaccacaccgtgcggtggcaccttcgcgcccaggacctccgagcggagcgcacagccg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302581100 tgtaccacaccgtgcggtggcaccttcgcgcccaggacctccgagcggagcgcacagccg 302581041
Query: 297 cgcag 301
|||||
Sbjct: 302581040 cgcag 302581036
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 499 gcaacaactgaatgactcctctgtcatcatcagcgccctcaagacctacctggtgtcagg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302579071 gcaacaactgaatgactcctctgtcatcatcagcgccctcaagacctacctggtgtcagg 302579012
Query: 559 g 559
|
Sbjct: 302579011 g 302579011
>Sscrofa_Chr02
|| Length = 162569375
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 870 cagctgccatgtacctcatcagcaagcggctccagagcaggcaccacctccagga 924
|||||||||||||||||||||||||| || || ||| ||||||| ||||| ||||
Sbjct: 47615058 cagctgccatgtacctcatcagcaagaggatcaagatcaggcacaacctctagga 47615112
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,468,699
Number of extensions: 113
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 8
Length of query: 1059
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1038
Effective length of database: 2,808,413,156
Effective search space: 2915132855928
Effective search space used: 2915132855928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)