Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001163.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialy... 441 e-124
Alignment gi|NP_001091582.1| alpha-2,8-sialyltransferase 8B [Bos taurus]. 218 9e-57
Alignment gi|NP_001001599.1| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,... 134 1e-31
Alignment gi|NP_001179803.1| ST8 alpha-N-acetyl-neuraminide alpha-2,8-sia... 99 6e-21
Alignment gi|XP_002697803.1| PREDICTED: ST8 alpha-N-acetyl-neuraminide al... 99 6e-21
Alignment gi|NP_001027470.1| alpha-N-acetylneuraminide alpha-2,8-sialyltr... 90 4e-18
Alignment gi|NP_001096697.1| ST8 alpha-N-acetyl-neuraminide alpha-2,8-sia... 84 2e-16
Alignment gi|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 59 9e-09
Alignment gi|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase... 57 3e-08
Alignment gi|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 56 6e-08
>ref|NP_001001163.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase [Bos
taurus].
Length = 359
Score = 441 bits (1133), Expect = e-124
Identities = 224/227 (98%), Positives = 225/227 (99%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKE+ARTEEHQETQLIGDGEL LSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEMARTEEHQETQLIGDGELSLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
SSIFQHSVEG KINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 SSIFQHSVEGGKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 867
SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD
Sbjct: 121 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 180
Query: 868 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 181 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 227
>ref|NP_001091582.1| alpha-2,8-sialyltransferase 8B [Bos taurus].
Length = 366
Score = 218 bits (554), Expect = 9e-57
Identities = 104/182 (57%), Positives = 140/182 (76%), Gaps = 4/182 (2%)
Frame = +1
Query: 475 NSSDKIIRKAGSSIFQHSVEG----WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPG 642
+SS ++ ++ SI +H+++ W+ N +L L IRK IL+FLDAE+D+SV+K + KPG
Sbjct: 53 SSSPAVVDRSNESI-KHNIQPASAKWRHNQTLSLRIRKQILKFLDAEKDISVLKGTLKPG 111
Query: 643 DVIHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNF 822
D+IHY+ DR T+N+SQ+L+ LLP SP+KN+ F TCA+VGNSG+LL+S CG+EID+H+F
Sbjct: 112 DIIHYIFDRDSTMNVSQNLYELLPRTSPLKNKHFGTCAIVGNSGVLLNSGCGQEIDTHSF 171
Query: 823 VIRCNLAPVVEFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWI 1002
VIRCNLAPV E+A DVG K+D +TMNPSVVQRAF N + REK + RL LN S+LWI
Sbjct: 172 VIRCNLAPVQEYARDVGLKTDLVTMNPSVVQRAFEDLVNATWREKLLQRLHSLNGSILWI 231
Query: 1003 PA 1008
PA
Sbjct: 232 PA 233
>ref|NP_001001599.1| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase [Bos
taurus].
Length = 379
Score = 134 bits (337), Expect = 1e-31
Identities = 65/158 (41%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQDLHSLLP 714
W N + L R+ IL+ +D ++ S+ K+S + G ++HY + +IS + SLLP
Sbjct: 89 WTFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLP 148
Query: 715 EVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDFIT 894
+VSP+ N+R+ CAVVGNSGIL S CG +ID +FV RCN AP F DVG K++ T
Sbjct: 149 DVSPIVNKRYNICAVVGNSGILTGSRCGPQIDKSDFVFRCNFAPTEAFQRDVGRKTNLTT 208
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ + DR F L L+ ++LWIPA
Sbjct: 209 FNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 246
>ref|NP_001179803.1| ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Bos
taurus].
Length = 376
Score = 99.0 bits (245), Expect = 6e-21
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W +N S + + + R +A + + + G + Y +D +I+Q++ + P+
Sbjct: 93 WAMNISEANQFKSTLYRCCNAPPFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPK 152
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE-FAADVGTKSDFIT 894
P +FK CAVVGN GIL +S CG+EI+S +FV RCNL P+ E + DVG K+D +T
Sbjct: 153 DMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVT 212
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ F + E R F L + ++ + +PA
Sbjct: 213 VNPSIITERF--HKLEKWRRPFYRVLQLYENASVLLPA 248
>ref|XP_002697803.1| PREDICTED: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase
5 [Bos taurus].
Length = 376
Score = 99.0 bits (245), Expect = 6e-21
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W +N S + + + R +A + + + G + Y +D +I+Q++ + P+
Sbjct: 93 WAMNISEANQFKSTLSRCCNAPSFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPK 152
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE-FAADVGTKSDFIT 894
P +FK CAVVGN GIL +S CG+EI+S +FV RCNL P+ E + DVG K+D +T
Sbjct: 153 DMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVT 212
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ F + E R F L + ++ + +PA
Sbjct: 213 VNPSIITERF--HKLEKWRRPFYRVLQLYENASVLLPA 248
>ref|NP_001027470.1| alpha-N-acetylneuraminide alpha-2,8-sialyltransferase [Bos taurus].
Length = 356
Score = 89.7 bits (221), Expect = 4e-18
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W+ N + RK + D ++ K + G + Y + + I +SL P+
Sbjct: 68 WRRNRTAAGIFRKQMEDCCDPAHLFAMTKMNAPMGKSLWYDGEFLYSFTIDNSTYSLFPQ 127
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPV-VEFAADVGTKSDFIT 894
+P + K CAVVGN GIL S CG++ID +FV+RCNL P+ E+ DVG+KS +T
Sbjct: 128 ATPFQ-LPLKKCAVVGNGGILKKSGCGRQIDEADFVMRCNLPPLSSEYTKDVGSKSHLVT 186
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ F R+ FV + + N S +++PA
Sbjct: 187 ANPSIIRQRFQNLL--WSRKTFVDHMKVYNHSYIYMPA 222
>ref|NP_001096697.1| ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Bos
taurus].
Length = 243
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
WK R + DA ++ V +++ G + Y ++ + + I +++ +LP
Sbjct: 115 WKRQVEEYENFRAKLASCCDAVQNFIVSQNNTPIGTNMTYEVESKSKIQIKENIFDMLPV 174
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV-EFAADVGTKSDFIT 894
P F CAVVGN GIL S CG EID +FV RCNL P DVGTK++ +T
Sbjct: 175 FQPFVGYSFNQCAVVGNGGILNQSLCGAEIDKADFVFRCNLPPTTGNVTNDVGTKTNLVT 234
Query: 895 MNPSVVQR 918
+NPS++++
Sbjct: 235 LNPSIIKQ 242
>ref|NP_001002892.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Bos taurus].
Length = 350
Score = 58.5 bits (140), Expect = 9e-09
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMK---NRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAP 846
T + + L ++P +P + R+ + CAVVGNSG L S G ++D HNF++R N AP
Sbjct: 124 TNEVLEKLFQIVPGENPYRFRDPRQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAP 183
Query: 847 VVEFAADVGTKSDFITMNP 903
V F DVG+++ M P
Sbjct: 184 TVGFEQDVGSRTTHHFMYP 202
>ref|NP_001008668.2| beta-galactoside alpha-2,6-sialyltransferase 2 [Bos taurus].
Length = 495
Score = 56.6 bits (135), Expect = 3e-08
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +1
Query: 703 SLLPEV--SPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGT 876
+L+P V S + RR +TCAVV ++G +L+S G+EIDSH+ V+R N AP + DVG
Sbjct: 250 ALVPPVPLSRLLPRRLRTCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGN 309
Query: 877 KSDFITMNPSVV 912
K+ +N ++
Sbjct: 310 KTTVRIINSQIL 321
>ref|NP_001091452.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Bos taurus].
Length = 339
Score = 55.8 bits (133), Expect = 6e-08
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +1
Query: 745 KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKS 882
+ CAVVGNSG L +S G +IDSH+FV+R N AP F ADVG K+
Sbjct: 139 RRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGFEADVGRKT 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,081,590
Number of extensions: 1259684
Number of successful extensions: 7918
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 7742
Number of HSP's successfully gapped: 16
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014781
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546003.2| PREDICTED: similar to CMP-N-acetylneuraminate-p... 509 e-144
Alignment gi|NP_001091017.1| alpha-2,8-sialyltransferase 8B [Canis lupus ... 208 7e-54
Alignment gi|XP_852981.1| PREDICTED: similar to ST8 alpha-N-acetyl-neuram... 135 5e-32
Alignment gi|XP_534865.2| PREDICTED: similar to Alpha-N-acetylneuraminide... 92 6e-19
Alignment gi|XP_544243.2| PREDICTED: similar to Alpha-2,8-sialyltransfera... 92 6e-19
Alignment gi|XP_546834.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 58 1e-08
Alignment gi|XP_539171.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 57 4e-08
Alignment gi|XP_855629.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 57 4e-08
Alignment gi|XP_860943.1| PREDICTED: similar to CMP-N-acetylneuraminate-b... 55 8e-08
Alignment gi|XP_535839.2| PREDICTED: similar to CMP-N-acetylneuraminate-b... 54 2e-07
>ref|XP_546003.2| PREDICTED: similar to CMP-N-acetylneuraminate-poly-alpha-2,8-sialyl
transferase (Alpha-2,8-sialyltransferase 8D) (ST8Sia IV)
(Polysialyltransferase-1) [Canis familiaris].
Length = 547
Score = 509 bits (1312), Expect = e-144
Identities = 276/352 (78%), Positives = 278/352 (78%), Gaps = 16/352 (4%)
Frame = +1
Query: 1 EPSCRSGRHLPCTRCLFGKEXXXXXXXXXXXXXXXXXXXXECAGHCSRTSGSSAGLQRTL 180
E SCRSGRHL CTRCL G+E A S T SA
Sbjct: 72 EASCRSGRHLRCTRCLLGEEPGAPGRRRGASRAGLAPPGRASAALRSGTGRGSAAED--- 128
Query: 181 ETCP*DPGSTLSSRF----------------TDSPSP*LHLPKTEPLYEEKVRELGQPGL 312
P DP L+ R P P LP TEP Y EKVRELG PGL
Sbjct: 129 ---PCDP--LLTPRLHALLRLHGPPPTPPPPPPPPPPRPCLPPTEPFYREKVRELGPPGL 183
Query: 313 SRAPKMRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKI 492
SRAPKMRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKI
Sbjct: 184 SRAPKMRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKI 243
Query: 493 IRKAGSSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRR 672
IRKAGSSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRR
Sbjct: 244 IRKAGSSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRR 303
Query: 673 RTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV 852
RTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV
Sbjct: 304 RTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV 363
Query: 853 EFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
EFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 364 EFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 415
>ref|NP_001091017.1| alpha-2,8-sialyltransferase 8B [Canis lupus familiaris].
Length = 332
Score = 208 bits (529), Expect = 7e-54
Identities = 110/223 (49%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
Frame = +1
Query: 343 KRWTICTISLLLIFYKTKEIARTEEHQETQLIGD-GELCLSRSLVNSSDKIIRKAGSSIF 519
+ W + ++LL++F +I+ EE IGD G RS VNS
Sbjct: 6 RSWMLAALTLLVVFLIFADISEIEEE-----IGDSGGRGTIRSAVNSL------------ 48
Query: 520 QHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDL 699
HS RK IL+FLDAE+D+SV+K + KPGD+IHY+ DR T+N+SQ+L
Sbjct: 49 -HSKSN-----------RKQILKFLDAEKDISVLKGTLKPGDIIHYIFDRDSTMNVSQNL 96
Query: 700 HSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTK 879
+ LLP SP+KN+ F+TCA+VGNSG+LL+S CG+EID+H+FVIRCNLAPV E+ DVG K
Sbjct: 97 YDLLPRTSPLKNKHFRTCAIVGNSGVLLNSGCGQEIDTHSFVIRCNLAPVQEYGRDVGLK 156
Query: 880 SDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+D +TMNPSV+QRAF N + REK + RL LN S+LWIPA
Sbjct: 157 TDLVTMNPSVIQRAFEDLVNATWREKLLQRLRSLNGSILWIPA 199
>ref|XP_852981.1| PREDICTED: similar to ST8 alpha-N-acetyl-neuraminide
alpha-2,8-sialyltransferase 3 [Canis familiaris].
Length = 468
Score = 135 bits (341), Expect = 5e-32
Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
Frame = +1
Query: 520 QHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQD 696
Q W N + L R+ IL+ +D ++ S+ K+S + G ++HY + +IS +
Sbjct: 172 QEKPSKWTFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNN 231
Query: 697 LHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGT 876
SLLP+VSP+ N+ F CAVVGNSGIL S CG+EID +FV RCN AP F DVG
Sbjct: 232 FRSLLPDVSPIVNKHFNICAVVGNSGILTGSRCGQEIDKSDFVFRCNFAPTEAFQRDVGR 291
Query: 877 KSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
K++ T NPS++++ + DR F L L+ ++LWIPA
Sbjct: 292 KTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 335
>ref|XP_534865.2| PREDICTED: similar to Alpha-N-acetylneuraminide
alpha-2,8-sialyltransferase (Ganglioside GD3 synthase)
(Ganglioside GT3 synthase) (Alpha-2,8-sialyltransferase
8A) (ST8Sia I) isoform 1 [Canis familiaris].
Length = 356
Score = 92.4 bits (228), Expect = 6e-19
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W+ N + RK + D ++ K + G + Y + + I +SL P+
Sbjct: 68 WRRNQTAARVFRKQMEDCCDPAHLFAMTKLNSPMGKSMWYDGEFLYSFTIDNSTYSLFPQ 127
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPV-VEFAADVGTKSDFIT 894
+P + K CAVVGN GIL S CG++ID NFV+RCNL P+ E+ DVG+KS +T
Sbjct: 128 ATPFQ-LPLKKCAVVGNGGILKKSGCGRQIDEANFVMRCNLPPLSSEYTKDVGSKSHLVT 186
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ F R+ FV + + N S +++PA
Sbjct: 187 ANPSIIRQRFQNLL--WSRKTFVDNMKIYNHSYIYMPA 222
>ref|XP_544243.2| PREDICTED: similar to Alpha-2,8-sialyltransferase 8F (ST8Sia VI)
[Canis familiaris].
Length = 331
Score = 92.4 bits (228), Expect = 6e-19
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
WK R + DA ++ V +++ G + Y ++ + + I +++ ++ P
Sbjct: 48 WKRQEEEYENFRAKLASCCDAAQNFIVSQNNTPAGTNMSYEVESKNEILIRENIFNMFPV 107
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV-EFAADVGTKSDFIT 894
P + CAVVGN GIL S CG EID +FV RCNL P+ + DVG+K++ +T
Sbjct: 108 SQPFVEYPYNQCAVVGNGGILNKSLCGAEIDKSDFVFRCNLPPITGNISKDVGSKTNVVT 167
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS+++ +G + + +E F+ ++ D+ L +PA
Sbjct: 168 VNPSIIRLKYGNLKKK--KEIFLEDIATYGDAFLLLPA 203
>ref|XP_546834.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalA.2) (SIAT4-B) (ST3Gal II)... [Canis familiaris].
Length = 350
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMKNR---RFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAP 846
T + + L ++P +P + R + + CAVVGNSG L S G ++D HNF++R N AP
Sbjct: 124 TNEVLEKLFQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAP 183
Query: 847 VVEFAADVGTKSDFITMNP 903
V F DVG+++ M P
Sbjct: 184 TVGFEQDVGSRTTHHFMYP 202
>ref|XP_539171.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 342
Score = 56.6 bits (135), Expect = 4e-08
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +1
Query: 691 QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEF 858
++L ++P V P+ +R + CAVVGNSG L +S G +IDSH+FV+R N AP F
Sbjct: 120 RELFQVVPGNVDPLLEKRSVGCRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGF 179
Query: 859 AADVGTKS 882
DVG+K+
Sbjct: 180 EMDVGSKT 187
>ref|XP_855629.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
(Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
(ST3GalIA) (ST3O) (ST3GalA.1) (SIAT4-A) (S... iso [Canis
familiaris].
Length = 227
Score = 56.6 bits (135), Expect = 4e-08
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +1
Query: 691 QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEF 858
++L ++P V P+ +R + CAVVGNSG L +S G +IDSH+FV+R N AP F
Sbjct: 117 RELFQVVPGNVDPLLEKRSVGCRRCAVVGNSGNLRESWYGPQIDSHDFVLRMNKAPTAGF 176
Query: 859 AADVGTKS 882
DVG+K+
Sbjct: 177 EMDVGSKT 184
>ref|XP_860943.1| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
6-sialyltransferase (Beta-galactoside
alpha-2,6-sialyltransferase) (Alpha 2,6-ST)
(Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75)
isoform 2 [Canis familiaris].
Length = 289
Score = 55.5 bits (132), Expect = 8e-08
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +1
Query: 724 PMKNRRFKT-----CAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDF 888
P +N R K CAVV ++G L S+ G+EID H+ V+R N AP F DVGTK+
Sbjct: 52 PKENIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTASFQQDVGTKTTI 111
Query: 889 ITMNPSVVQRAFGGFRNES 945
MN ++ F ++S
Sbjct: 112 RLMNSQILAELNKRFNSDS 130
>ref|XP_535839.2| PREDICTED: similar to
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
6-sialyltransferase (Beta-galactoside
alpha-2,6-sialyltransferase) (Alpha 2,6-ST)
(Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75)
isoform 1 [Canis familiaris].
Length = 399
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +1
Query: 724 PMKNRRFKT-----CAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDF 888
P +N R K CAVV ++G L S+ G+EID H+ V+R N AP F DVGTK+
Sbjct: 163 PKENIRTKAGPWGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTASFQQDVGTKTTI 222
Query: 889 ITMNPSVV 912
MN +V
Sbjct: 223 RLMNSQLV 230
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,846,940
Number of extensions: 1300617
Number of successful extensions: 8301
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 8127
Number of HSP's successfully gapped: 18
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032399.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialy... 451 e-127
Alignment gi|XP_001924922.1| PREDICTED: alpha-2,8-sialyltransferase 8B [S... 223 1e-58
Alignment gi|XP_003361588.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc... 133 2e-31
Alignment gi|XP_001927625.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc... 133 2e-31
Alignment gi|XP_003360731.1| PREDICTED: alpha-2,8-sialyltransferase 8E-li... 99 5e-21
Alignment gi|XP_003130770.1| PREDICTED: alpha-2,8-sialyltransferase 8F-li... 91 1e-18
Alignment gi|XP_003360637.1| PREDICTED: alpha-N-acetylneuraminide alpha-2... 78 7e-15
Alignment gi|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-a... 59 4e-09
Alignment gi|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-gala... 58 7e-09
Alignment gi|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyl... 54 2e-07
>ref|NP_001032399.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase [Sus
scrofa].
Length = 359
Score = 451 bits (1159), Expect = e-127
Identities = 227/227 (100%), Positives = 227/227 (100%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 867
SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD
Sbjct: 121 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 180
Query: 868 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 181 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 227
>ref|XP_001924922.1| PREDICTED: alpha-2,8-sialyltransferase 8B [Sus scrofa].
Length = 375
Score = 223 bits (569), Expect = 1e-58
Identities = 116/242 (47%), Positives = 162/242 (66%), Gaps = 20/242 (8%)
Frame = +1
Query: 343 KRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNS-------------- 480
+ W + ++LL++F +++ T E Q G G + RS VNS
Sbjct: 6 RSWMLAALTLLVVFLIFADVSETREDQGNSG-GRGTI---RSAVNSLHSKSNRAEVVING 61
Query: 481 --SDKIIRKAGSSIFQHSVEG----WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPG 642
S ++ ++ SI +H+++ W+ N +L L IRK IL+FLDAE+D+SV+K + KPG
Sbjct: 62 SSSPAVVDRSNESI-KHNIQPASAKWRHNQTLSLRIRKQILKFLDAEKDISVLKGTLKPG 120
Query: 643 DVIHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNF 822
D+IHY+ DR T+N+SQ+L+ LLP SP+KN+ F TCA+VGNSG+LL+S CG+EID+H+F
Sbjct: 121 DIIHYIFDRDSTMNVSQNLYELLPRTSPLKNKHFGTCAIVGNSGVLLNSGCGEEIDTHSF 180
Query: 823 VIRCNLAPVVEFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWI 1002
VIRCNLAPV E+A DVG K+D +TMNPSV+QRAF N + REK + RL LN S+LWI
Sbjct: 181 VIRCNLAPVQEYARDVGIKTDLVTMNPSVIQRAFEDLVNATWREKLLQRLHSLNGSILWI 240
Query: 1003 PA 1008
PA
Sbjct: 241 PA 242
>ref|XP_003361588.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha
2,8-sialyltransferase-like [Sus scrofa].
Length = 379
Score = 133 bits (334), Expect = 2e-31
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQDLHSLLP 714
W N + L R+ IL+ +D ++ S+ K+S + G ++HY + +IS + SLLP
Sbjct: 89 WTFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLP 148
Query: 715 EVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDFIT 894
+VSP+ N+ + CAVVGNSGIL S CG++ID +FV RCN AP F DVG K++ T
Sbjct: 149 DVSPIVNKHYNICAVVGNSGILTGSRCGQQIDKSDFVFRCNFAPTEAFQRDVGRKTNLTT 208
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ + DR F L L+ ++LWIPA
Sbjct: 209 FNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 246
>ref|XP_001927625.1| PREDICTED: sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha
2,8-sialyltransferase [Sus scrofa].
Length = 324
Score = 133 bits (334), Expect = 2e-31
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQDLHSLLP 714
W N + L R+ IL+ +D ++ S+ K+S + G ++HY + +IS + SLLP
Sbjct: 34 WTFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNNFRSLLP 93
Query: 715 EVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGTKSDFIT 894
+VSP+ N+ + CAVVGNSGIL S CG++ID +FV RCN AP F DVG K++ T
Sbjct: 94 DVSPIVNKHYNICAVVGNSGILTGSRCGQQIDKSDFVFRCNFAPTEAFQRDVGRKTNLTT 153
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ + DR F L L+ ++LWIPA
Sbjct: 154 FNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 191
>ref|XP_003360731.1| PREDICTED: alpha-2,8-sialyltransferase 8E-like, partial [Sus scrofa].
Length = 452
Score = 98.6 bits (244), Expect = 5e-21
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W +N S + + + R +A + + + G + Y +D +I+Q++ + P+
Sbjct: 116 WAMNISEANQFKSTLSRCCNAPSFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPK 175
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE-FAADVGTKSDFIT 894
P +FK CAVVGN GIL +S CG+EI+S +FV RCNL P+ E + DVG K+D +T
Sbjct: 176 DMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVT 235
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ F + E R F L + ++ + +PA
Sbjct: 236 VNPSIITERF--HKLEKWRRPFYRVLQVYENASVLLPA 271
>ref|XP_003130770.1| PREDICTED: alpha-2,8-sialyltransferase 8F-like [Sus scrofa].
Length = 370
Score = 90.9 bits (224), Expect = 1e-18
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
WK + R + DA ++ V +++ G + Y ++ + + I + + +LP
Sbjct: 87 WKRQAEAYENFRAKLASCCDAVQNFIVSQNNTPVGTNMSYEVESKSEIQIRESIFDMLPV 146
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV-EFAADVGTKSDFIT 894
P + CAVVGN GIL S CG EID +FV RCNL P + DVG+K++ +T
Sbjct: 147 FQPFIGYPYNQCAVVGNGGILNQSLCGAEIDKSDFVFRCNLPPTTGNISNDVGSKTNLVT 206
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS+++ +G + + + F+ ++ D+ + +PA
Sbjct: 207 LNPSIIRLRYGNLKEK--KAVFLEDIATYGDAFVLLPA 242
>ref|XP_003360637.1| PREDICTED: alpha-N-acetylneuraminide
alpha-2,8-sialyltransferase-like, partial [Sus scrofa].
Length = 199
Score = 78.2 bits (191), Expect = 7e-15
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPV-V 852
+ I +SL P+ +P + K CAVVGN GIL S CG++ID NFV+RCNL P+
Sbjct: 119 SFTIDNSTYSLFPQATPFQ-LPLKKCAVVGNGGILKKSGCGRQIDEANFVMRCNLPPLSS 177
Query: 853 EFAADVGTKSDFITMNPSVVQR 918
E+ DVG+KS +T NPS++++
Sbjct: 178 EYTKDVGSKSHLVTANPSIIRQ 199
>ref|NP_001004047.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Sus scrofa].
Length = 343
Score = 58.9 bits (141), Expect = 4e-09
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Frame = +1
Query: 691 QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEF 858
++L ++P V P+ +R + CAVVGNSG L +S G +IDSH+FV+R N AP F
Sbjct: 121 RELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPTEGF 180
Query: 859 AADVGTKS 882
ADVG+K+
Sbjct: 181 EADVGSKT 188
>ref|XP_003361349.1| PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Sus scrofa].
Length = 335
Score = 58.2 bits (139), Expect = 7e-09
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMKNR---RFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAP 846
T + + L ++P +P + R + + CAVVGNSG L S G ++D HNF++R N AP
Sbjct: 124 TNEVLEKLFQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGPDVDGHNFIMRMNQAP 183
Query: 847 VVEFAADVGTKSDFITMNP 903
V F DVG+++ M P
Sbjct: 184 TVGFEQDVGSRTTHHFMYP 202
>ref|XP_003124903.1| PREDICTED: beta-galactoside alpha-2,6-sialyltransferase 2-like [Sus
scrofa].
Length = 503
Score = 53.5 bits (127), Expect = 2e-07
Identities = 31/80 (38%), Positives = 46/80 (57%)
Frame = +1
Query: 673 RTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV 852
RTL + L LLP R ++CAVV ++G +L+S G+EIDSH+ V+R N AP
Sbjct: 257 RTLVPAVPLGQLLP-------RGLRSCAVVTSAGAILNSSLGEEIDSHDAVLRFNSAPTH 309
Query: 853 EFAADVGTKSDFITMNPSVV 912
+ DVG K+ +N ++
Sbjct: 310 GYEKDVGNKTTIRIINSQIL 329
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,114,597
Number of extensions: 812365
Number of successful extensions: 5327
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5224
Number of HSP's successfully gapped: 15
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153217.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialy... 442 e-124
Alignment gi|NP_033209.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltr... 442 e-124
Alignment gi|NP_033207.2| alpha-2,8-sialyltransferase 8B [Mus musculus]. 221 5e-58
Alignment gi|NP_033208.2| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-s... 139 5e-33
Alignment gi|NP_035504.2| alpha-N-acetylneuraminide alpha-2,8-sialyltrans... 93 3e-19
Alignment gi|NP_665837.1| alpha-2,8-sialyltransferase 8F [Mus musculus]. 89 5e-18
Alignment gi|NP_694764.2| alpha-2,8-sialyltransferase 8E isoform middle [... 86 3e-17
Alignment gi|NP_038694.2| alpha-2,8-sialyltransferase 8E isoform long [Mu... 86 3e-17
Alignment gi|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 68 1e-11
Alignment gi|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alph... 62 9e-10
>ref|NP_001153217.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform 2
[Mus musculus].
Length = 266
Score = 442 bits (1136), Expect = e-124
Identities = 222/227 (97%), Positives = 225/227 (99%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
S+IFQHSV+GWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 STIFQHSVQGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 867
S +LHSLLPEVSPMKNRRFKTCAVVGNSGILLDS CGKEIDSHNFVIRCNLAPVVEFAAD
Sbjct: 121 SHNLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSGCGKEIDSHNFVIRCNLAPVVEFAAD 180
Query: 868 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 181 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 227
>ref|NP_033209.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform 1
[Mus musculus].
Length = 359
Score = 442 bits (1136), Expect = e-124
Identities = 222/227 (97%), Positives = 225/227 (99%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
S+IFQHSV+GWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 STIFQHSVQGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 867
S +LHSLLPEVSPMKNRRFKTCAVVGNSGILLDS CGKEIDSHNFVIRCNLAPVVEFAAD
Sbjct: 121 SHNLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSGCGKEIDSHNFVIRCNLAPVVEFAAD 180
Query: 868 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 181 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 227
>ref|NP_033207.2| alpha-2,8-sialyltransferase 8B [Mus musculus].
Length = 375
Score = 221 bits (564), Expect = 5e-58
Identities = 113/241 (46%), Positives = 158/241 (65%), Gaps = 19/241 (7%)
Frame = +1
Query: 343 KRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNS-------------- 480
+ W + ++LL++F +I+ EE ++ G RS VNS
Sbjct: 6 RSWMLAALTLLVVFLIFADISEIEE----EIGNSGGRGTIRSAVNSLHSKSNRAEVVING 61
Query: 481 -SDKIIRKAGSSIFQHSVEG----WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGD 645
S + + +H+++ W+ N +L L IRK IL+FLDAE+D+SV+K + KPGD
Sbjct: 62 SSPPAVADRSNESLKHNIQPASSKWRHNQTLSLRIRKQILKFLDAEKDISVLKGTLKPGD 121
Query: 646 VIHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFV 825
+IHY+ DR T+N+SQ+L+ LLP SP+KN+ F+TCA+VGNSG+LL+S CG+EID+H+FV
Sbjct: 122 IIHYIFDRDSTMNVSQNLYELLPRTSPLKNKHFQTCAIVGNSGVLLNSGCGQEIDTHSFV 181
Query: 826 IRCNLAPVVEFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIP 1005
IRCNLAPV E+A DVG K+D +TMNPSV+QRAF N + REK + RL LN S+LWIP
Sbjct: 182 IRCNLAPVQEYARDVGLKTDLVTMNPSVIQRAFEDLVNATWREKLLQRLHGLNGSILWIP 241
Query: 1006 A 1008
A
Sbjct: 242 A 242
>ref|NP_033208.2| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase [Mus
musculus].
Length = 380
Score = 139 bits (349), Expect = 5e-33
Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Frame = +1
Query: 520 QHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQD 696
Q W N + L R+ IL+ +D ++ S+ KSS + G ++HY + +IS +
Sbjct: 84 QEKPSKWTFNRTAFLHQRQEILQHVDVIKNFSLTKSSVRIGQLMHYDYSSHKYVFSISNN 143
Query: 697 LHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGT 876
SLLP+VSP+ N+R+ CAVVGNSGIL S+CG+EID +FV RCN AP F DVG
Sbjct: 144 FRSLLPDVSPIMNKRYNVCAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFHKDVGR 203
Query: 877 KSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
K++ T NPS++++ + DR F L L+ ++LWIPA
Sbjct: 204 KTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 247
>ref|NP_035504.2| alpha-N-acetylneuraminide alpha-2,8-sialyltransferase [Mus musculus].
Length = 355
Score = 93.2 bits (230), Expect = 3e-19
Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W+ N + R+ + D ++ K + G + Y + + I +SL P+
Sbjct: 67 WRTNQTSASLFRRQMEDCCDPAHLFAMTKMNSPMGKSLWYDGELLYSFTIDNSTYSLFPQ 126
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPV-VEFAADVGTKSDFIT 894
+P + K CAVVGN GIL S CG++ID NFV+RCNL P+ E+ DVG+K+ +T
Sbjct: 127 ATPFQ-LPLKKCAVVGNGGILKMSGCGRQIDEANFVMRCNLPPLSSEYTRDVGSKTQLVT 185
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ F R+KFV + + N S +++PA
Sbjct: 186 ANPSIIRQRFENLL--WSRKKFVDNMKIYNHSYIYMPA 221
>ref|NP_665837.1| alpha-2,8-sialyltransferase 8F [Mus musculus].
Length = 398
Score = 89.0 bits (219), Expect = 5e-18
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W + R + DA +D V +++ G + Y ++ ++ + I +++ + P
Sbjct: 115 WNRQAEEYDNFRAKLASCCDAIQDFVVSQNNTPVGTNMSYEVESKKHIPIRENIFHMFPV 174
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAA-DVGTKSDFIT 894
P + + CAVVGN GIL S CG EID +FV RCNL P+ A+ DVG+K++ +T
Sbjct: 175 SQPFVDYPYNQCAVVGNGGILNKSLCGAEIDKSDFVFRCNLPPITGSASKDVGSKTNLVT 234
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ + + + + +F+ +S D+ L +PA
Sbjct: 235 VNPSIITLKYQNLKEK--KAQFLEDISTYGDAFLLLPA 270
>ref|NP_694764.2| alpha-2,8-sialyltransferase 8E isoform middle [Mus musculus].
Length = 376
Score = 86.3 bits (212), Expect = 3e-17
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 649 IHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVI 828
+ Y ++ +I Q++ + P+ P +FK CAVVGN GIL +S CGKEI+S +FV
Sbjct: 130 LRYEVESSGLYHIDQEIFKMFPKEMPYYRSQFKKCAVVGNGGILKNSGCGKEINSADFVF 189
Query: 829 RCNLAPVVE-FAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIP 1005
RCNL P+ + DVG K+D +T+NPS++ F + E R F L ++ + +P
Sbjct: 190 RCNLPPISGIYTTDVGEKTDVVTVNPSIIIDRF--HKLEKWRRPFFSVLQRYENASVLLP 247
Query: 1006 A 1008
A
Sbjct: 248 A 248
>ref|NP_038694.2| alpha-2,8-sialyltransferase 8E isoform long [Mus musculus].
Length = 412
Score = 86.3 bits (212), Expect = 3e-17
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = +1
Query: 649 IHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVI 828
+ Y ++ +I Q++ + P+ P +FK CAVVGN GIL +S CGKEI+S +FV
Sbjct: 166 LRYEVESSGLYHIDQEIFKMFPKEMPYYRSQFKKCAVVGNGGILKNSGCGKEINSADFVF 225
Query: 829 RCNLAPVVE-FAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIP 1005
RCNL P+ + DVG K+D +T+NPS++ F + E R F L ++ + +P
Sbjct: 226 RCNLPPISGIYTTDVGEKTDVVTVNPSIIIDRF--HKLEKWRRPFFSVLQRYENASVLLP 283
Query: 1006 A 1008
A
Sbjct: 284 A 284
>ref|NP_033203.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Mus musculus].
Length = 337
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 7/78 (8%)
Frame = +1
Query: 670 RRTLNIS---QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVI 828
R+ N+S ++L L+P V PM N+R + CAVVGNSG L DS G EIDSH+FV+
Sbjct: 105 RKPNNLSDTVKELFRLVPGNVDPMLNKRLVGCRRCAVVGNSGNLKDSSYGPEIDSHDFVL 164
Query: 829 RCNLAPVVEFAADVGTKS 882
R N AP V F ADVG+++
Sbjct: 165 RMNKAPTVGFEADVGSRT 182
>ref|NP_033205.2| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Mus musculus].
Length = 350
Score = 61.6 bits (148), Expect = 9e-10
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMKNR---RFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAP 846
T + + L ++P +P + R + + CAVVGNSG L S G+E+DSHNF++R N AP
Sbjct: 124 TNEVLEKLFQIVPGENPYRFRDPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAP 183
Query: 847 VVEFAADVGTKSDFITMNP 903
V F DVG+++ M P
Sbjct: 184 TVGFEKDVGSRTTHHFMYP 202
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,425,955
Number of extensions: 1056473
Number of successful extensions: 5535
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5409
Number of HSP's successfully gapped: 16
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005659.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltr... 444 e-125
Alignment gi|NP_778222.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltr... 325 3e-89
Alignment gi|NP_006002.1| alpha-2,8-sialyltransferase 8B [Homo sapiens]. 223 3e-58
Alignment gi|NP_056963.2| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-s... 138 9e-33
Alignment gi|NP_037437.2| alpha-2,8-sialyltransferase 8E [Homo sapiens]. 99 8e-21
Alignment gi|NP_003025.1| alpha-N-acetylneuraminide alpha-2,8-sialyltrans... 94 3e-19
Alignment gi|NP_001004470.1| alpha-2,8-sialyltransferase 8F [Homo sapiens]. 89 6e-18
Alignment gi|NP_775479.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 63 4e-10
Alignment gi|NP_003024.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 63 4e-10
Alignment gi|NP_008858.1| CMP-N-acetylneuraminate-beta-galactosamide-alph... 59 7e-09
>ref|NP_005659.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a
[Homo sapiens].
Length = 359
Score = 444 bits (1141), Expect = e-125
Identities = 224/227 (98%), Positives = 225/227 (99%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGEL LSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELSLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
SSIFQH+VEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 SSIFQHNVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 867
S DLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD
Sbjct: 121 SHDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAAD 180
Query: 868 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA
Sbjct: 181 VGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 227
>ref|NP_778222.1| CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform b
[Homo sapiens].
Length = 168
Score = 325 bits (834), Expect = 3e-89
Identities = 165/168 (98%), Positives = 166/168 (98%)
Frame = +1
Query: 328 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNSSDKIIRKAG 507
MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGEL LSRSLVNSSDKIIRKAG
Sbjct: 1 MRSIRKRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELSLSRSLVNSSDKIIRKAG 60
Query: 508 SSIFQHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 687
SSIFQH+VEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI
Sbjct: 61 SSIFQHNVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNI 120
Query: 688 SQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIR 831
S DLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIR
Sbjct: 121 SHDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIR 168
>ref|NP_006002.1| alpha-2,8-sialyltransferase 8B [Homo sapiens].
Length = 375
Score = 223 bits (567), Expect = 3e-58
Identities = 115/242 (47%), Positives = 161/242 (66%), Gaps = 20/242 (8%)
Frame = +1
Query: 343 KRWTICTISLLLIFYKTKEIARTEEHQETQLIGDGELCLSRSLVNS-------------- 480
+ W + ++LL++F +I+ EE ++ G RS VNS
Sbjct: 6 RSWMLAALTLLVVFLIFADISEIEE----EIGNSGGRGTIRSAVNSLHSKSNRAEVVING 61
Query: 481 --SDKIIRKAGSSIFQHSVEG----WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPG 642
S ++ ++ SI +H+++ W+ N +L L IRK IL+FLDAE+D+SV+K + KPG
Sbjct: 62 SSSPAVVDRSNESI-KHNIQPASSKWRHNQTLSLRIRKQILKFLDAEKDISVLKGTLKPG 120
Query: 643 DVIHYVLDRRRTLNISQDLHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNF 822
D+IHY+ DR T+N+SQ+L+ LLP SP+KN+ F TCA+VGNSG+LL+S CG+EID+H+F
Sbjct: 121 DIIHYIFDRDSTMNVSQNLYELLPRTSPLKNKHFGTCAIVGNSGVLLNSGCGQEIDAHSF 180
Query: 823 VIRCNLAPVVEFAADVGTKSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWI 1002
VIRCNLAPV E+A DVG K+D +TMNPSV+QRAF N + REK + RL LN S+LWI
Sbjct: 181 VIRCNLAPVQEYARDVGLKTDLVTMNPSVIQRAFEDLVNATWREKLLQRLHSLNGSILWI 240
Query: 1003 PA 1008
PA
Sbjct: 241 PA 242
>ref|NP_056963.2| sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase [Homo
sapiens].
Length = 380
Score = 138 bits (347), Expect = 9e-33
Identities = 67/164 (40%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Frame = +1
Query: 520 QHSVEGWKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRR-TLNISQD 696
Q WK N + L R+ IL+ +D ++ S+ K+S + G ++HY + +IS +
Sbjct: 84 QEKPSKWKFNRTAFLHQRQEILQHVDVIKNFSLTKNSVRIGQLMHYDYSSHKYVFSISNN 143
Query: 697 LHSLLPEVSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEFAADVGT 876
SLLP+VSP+ N+ + CAVVGNSGIL S+CG+EID +FV RCN AP F DVG
Sbjct: 144 FRSLLPDVSPIMNKHYNICAVVGNSGILTGSQCGQEIDKSDFVFRCNFAPTEAFQRDVGR 203
Query: 877 KSDFITMNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
K++ T NPS++++ + DR F L L+ ++LWIPA
Sbjct: 204 KTNLTTFNPSILEKYYNNLLTIQDRNNFFLSLKKLDGAILWIPA 247
>ref|NP_037437.2| alpha-2,8-sialyltransferase 8E [Homo sapiens].
Length = 376
Score = 98.6 bits (244), Expect = 8e-21
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W +N S + + + R +A + + + G + Y +D +I+Q++ + P+
Sbjct: 93 WAMNISEANQFKSTLSRCCNAPAFLFTTQKNTPLGTKLKYEVDTSGIYHINQEIFRMFPK 152
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVE-FAADVGTKSDFIT 894
P +FK CAVVGN GIL +S CG+EI+S +FV RCNL P+ E + DVG K+D +T
Sbjct: 153 DMPYYRSQFKKCAVVGNGGILKNSRCGREINSADFVFRCNLPPISEKYTMDVGVKTDVVT 212
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ F + E R F L + ++ + +PA
Sbjct: 213 VNPSIITERF--HKLEKWRRPFYRVLQVYENASVLLPA 248
>ref|NP_003025.1| alpha-N-acetylneuraminide alpha-2,8-sialyltransferase [Homo sapiens].
Length = 356
Score = 93.6 bits (231), Expect = 3e-19
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
W+ N + RK + D ++ K + G + Y + + I +SL P+
Sbjct: 68 WRRNQTAARAFRKQMEDCCDPAHLFAMTKMNSPMGKSMWYDGEFLYSFTIDNSTYSLFPQ 127
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPV-VEFAADVGTKSDFIT 894
+P + K CAVVGN GIL S CG++ID NFV+RCNL P+ E+ DVG+KS +T
Sbjct: 128 ATPFQ-LPLKKCAVVGNGGILKKSGCGRQIDEANFVMRCNLPPLSSEYTKDVGSKSQLVT 186
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
NPS++++ F R+ FV + + N S +++PA
Sbjct: 187 ANPSIIRQRFQNLL--WSRKTFVDNMKIYNHSYIYMPA 222
>ref|NP_001004470.1| alpha-2,8-sialyltransferase 8F [Homo sapiens].
Length = 398
Score = 89.0 bits (219), Expect = 6e-18
Identities = 46/158 (29%), Positives = 84/158 (53%), Gaps = 1/158 (0%)
Frame = +1
Query: 538 WKINSSLVLEIRKNILRFLDAERDVSVVKSSFKPGDVIHYVLDRRRTLNISQDLHSLLPE 717
WK + R + DA ++ V +++ G + Y ++ ++ + I +++ + P
Sbjct: 115 WKRQAEEYANFRAKLASCCDAVQNFVVSQNNTPVGTNMSYEVESKKEIPIKKNIFHMFPV 174
Query: 718 VSPMKNRRFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVV-EFAADVGTKSDFIT 894
P + + CAVVGN GIL S CG EID +FV RCNL P + + DVG+K++ +T
Sbjct: 175 SQPFVDYPYNQCAVVGNGGILNKSLCGTEIDKSDFVFRCNLPPTTGDVSKDVGSKTNLVT 234
Query: 895 MNPSVVQRAFGGFRNESDREKFVHRLSMLNDSVLWIPA 1008
+NPS++ +G + + + F+ ++ D+ +PA
Sbjct: 235 INPSIITLKYGNLKEK--KALFLEDIATYGDAFFLLPA 270
>ref|NP_775479.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Homo sapiens].
Length = 340
Score = 63.2 bits (152), Expect = 4e-10
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Frame = +1
Query: 691 QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEF 858
++L ++P V PM +R + CAVVGNSG L +S G EIDSH+FV+R N AP F
Sbjct: 118 KELFRVVPGNVDPMLEKRSVGCRRCAVVGNSGNLRESSYGPEIDSHDFVLRMNKAPTAGF 177
Query: 859 AADVGTKS 882
ADVGTK+
Sbjct: 178 EADVGTKT 185
>ref|NP_003024.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 1 [Homo sapiens].
Length = 340
Score = 63.2 bits (152), Expect = 4e-10
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Frame = +1
Query: 691 QDLHSLLP-EVSPMKNRRF---KTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAPVVEF 858
++L ++P V PM +R + CAVVGNSG L +S G EIDSH+FV+R N AP F
Sbjct: 118 KELFRVVPGNVDPMLEKRSVGCRRCAVVGNSGNLRESSYGPEIDSHDFVLRMNKAPTAGF 177
Query: 859 AADVGTKS 882
ADVGTK+
Sbjct: 178 EADVGTKT 185
>ref|NP_008858.1| CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase 2 [Homo sapiens].
Length = 350
Score = 58.9 bits (141), Expect = 7e-09
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 676 TLNISQDLHSLLPEVSPMKNR---RFKTCAVVGNSGILLDSECGKEIDSHNFVIRCNLAP 846
T + + L ++P +P + R + + CAVVGNSG L S G+++D HNF++R N AP
Sbjct: 124 TNEVLEKLFQIVPGENPYRFRDPHQCRRCAVVGNSGNLRGSGYGQDVDGHNFIMRMNQAP 183
Query: 847 VVEFAADVGTKSDFITMNP 903
V F DVG+++ M P
Sbjct: 184 TVGFEQDVGSRTTHHFMYP 202
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,985,967
Number of extensions: 1265162
Number of successful extensions: 7005
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 6855
Number of HSP's successfully gapped: 25
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014781
(1010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 872 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 872 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Minus
Query: 1 gaacccagctgcagaagcggccgccacctcccatgcacaaggtgtctcttcggaaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825882 gaacccagctgcagaagcggccgccacctcccatgcacaaggtgtctcttcggaaaagaa 110825823
Query: 61 acctgagccccagggaggcggcgcggagcgaccggggcagggctggcgggaaccgcgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825822 acctgagccccagggaggcggcgcggagcgaccggggcagggctggcgggaaccgcgagg 110825763
Query: 121 gagtgcgctgggcactgctcgaggaccagcgggagctcggctgggctgcagaggaccctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825762 gagtgcgctgggcactgctcgaggaccagcgggagctcggctgggctgcagaggaccctc 110825703
Query: 181 gagacctgcccctgagatcccggctccacgctctcctcgcgttttacagattccccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825702 gagacctgcccctgagatcccggctccacgctctcctcgcgttttacagattccccttcc 110825643
Query: 241 ccgtgactacatctccccaaaacggagcctttatatgaagagaaggtgagggagctgggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825642 ccgtgactacatctccccaaaacggagcctttatatgaagagaaggtgagggagctgggg 110825583
Query: 301 caaccaggactttcccgggcacccaagatgcgctccattaggaagaggtggacgatctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825582 caaccaggactttcccgggcacccaagatgcgctccattaggaagaggtggacgatctgc 110825523
Query: 361 acgataagtctgctcctgatcttttataagacaaaagaaatagcaagaactgaggagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110825522 acgataagtctgctcctgatcttttataagacaaaagaaatagcaagaactgaggagcac 110825463
Query: 421 caggagacgcaactcatcgg 440
||||||||||||||||||||
Sbjct: 110825462 caggagacgcaactcatcgg 110825443
Score = 521 bits (263), Expect = e-145
Identities = 263/263 (100%)
Strand = Plus / Minus
Query: 571 aggaagaacattcttcgtttccttgatgcagaacgcgatgtctctgtggtcaagagcagt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110808497 aggaagaacattcttcgtttccttgatgcagaacgcgatgtctctgtggtcaagagcagt 110808438
Query: 631 tttaagcctggtgatgtcatacactatgttctggataggcgccggacactaaatatttct 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110808437 tttaagcctggtgatgtcatacactatgttctggataggcgccggacactaaatatttct 110808378
Query: 691 caggatctgcacagcctcctacctgaagtttcaccaatgaaaaatcgcagatttaagacc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110808377 caggatctgcacagcctcctacctgaagtttcaccaatgaaaaatcgcagatttaagacc 110808318
Query: 751 tgcgcagttgttgggaattctggcattctgctagatagtgaatgtggaaaagagattgac 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110808317 tgcgcagttgttgggaattctggcattctgctagatagtgaatgtggaaaagagattgac 110808258
Query: 811 agtcacaattttgtaataaggtg 833
|||||||||||||||||||||||
Sbjct: 110808257 agtcacaattttgtaataaggtg 110808235
Score = 353 bits (178), Expect = 1e-94
Identities = 181/182 (99%)
Strand = Plus / Minus
Query: 829 aggtgtaatctagcccctgtggtggagtttgctgcagatgtgggaactaaatcagatttt 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110785823 aggtgtaatctagcccctgtggtggagtttgctgcagatgtgggaactaaatcagatttt 110785764
Query: 889 attaccatgaatccatcagttgtacaaagagcatttggaggctttcggaatgaaagtgac 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110785763 attaccatgaatccatcagttgtacaaagagcatttggaggctttcggaatgaaagtgac 110785704
Query: 949 agagaaaaatttgtgcacagactctccatgctgaatgacagtgtcctttggatccctgct 1008
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 110785703 agagaaaaatttgtgcacagactttccatgctgaatgacagtgtcctttggatccctgct 110785644
Query: 1009 tt 1010
||
Sbjct: 110785643 tt 110785642
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 440 gagatggcgagctgtgtttgagtcgatcacttgtcaatagttcagataaaatcattcgaa 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110819114 gagatggcgagctgtgtttgagtcgatcacttgtcaatagttcagataaaatcattcgaa 110819055
Query: 500 aggctggctcttcaatcttccagcattctgtagaaggttggaaaatcaattcctctttgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110819054 aggctggctcttcaatcttccagcattctgtagaaggttggaaaatcaattcctctttgg 110818995
Query: 560 tcctggagataagg 573
||||||||||||||
Sbjct: 110818994 tcctggagataagg 110818981
Score = 103 bits (52), Expect = 2e-19
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 278 aagagaaggtgagggagctggggcaaccaggactttcccgggcacccaagatgcgctcca 337
||||||| |||||||||||| || ||||||||||| |||||||||||| | ||||||
Sbjct: 111387417 aagagaaagtgagggagctgacgcctccaggactttcatgggcacccaagaagtgctcca 111387358
Query: 338 ttaggaagaggtggacgatctgcacgataagtctgctcctgatcttttataagacaaaag 397
||||||| ||| | ||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct: 111387357 acaggaagatgtgaattatctgcaggataaatctgctcttgatcttttataagacaaaag 111387298
Query: 398 aaatagcaagaa 409
|| ||| |||||
Sbjct: 111387297 aattagtaagaa 111387286
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,137,787
Number of extensions: 154
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 5
Length of query: 1010
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 989
Effective length of database: 2,808,413,156
Effective search space: 2777520611284
Effective search space used: 2777520611284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)