Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532948.2| PREDICTED: similar to Condensin subunit 2 (Barr... 496 e-140
>ref|XP_532948.2| PREDICTED: similar to Condensin subunit 2 (Barren homolog protein
1) (Chromosome-associated protein H) (hCAP-H) (XCAP-H
homolog) [Canis familiaris].
Length = 916
Score = 496 bits (1277), Expect = e-140
Identities = 254/312 (81%), Positives = 268/312 (85%), Gaps = 4/312 (1%)
Frame = +1
Query: 37 GSGDSEDEMGPPCPATM---NKSPSETRGRPHSASSPSERVFSMPHPRKAPLSTAGTPVL 207
G G + M C + + +E RGRP +ASSPSERVFSM PRKAPLST GTPVL
Sbjct: 28 GEGCARQSMSGTCEYGIIHGKRGFTEIRGRPLNASSPSERVFSMALPRKAPLSTPGTPVL 87
Query: 208 EDFPQNDDEKERLQRRRSRVFDLQFSTDSPRLLASPS-SRNIDVSATIPKFTNTQITEHY 384
EDFPQNDDEKERLQRRRSRV DLQFS DSP LLASPS SRNID+SATIPKFTNTQITEHY
Sbjct: 88 EDFPQNDDEKERLQRRRSRVLDLQFSADSPHLLASPSGSRNIDISATIPKFTNTQITEHY 147
Query: 385 STCIKLSTENKITTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDA 564
STCIKLSTENKITTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDA
Sbjct: 148 STCIKLSTENKITTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDA 207
Query: 565 VHADVYRVLGGLGKDAPCPEEAEDHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLN 744
VHADVYRVLGGLG+DA PEEAE H AD S +TGTTKKA KP+KKHS KT+EQN+NNLN
Sbjct: 208 VHADVYRVLGGLGRDAASPEEAESHDADTSTTKTGTTKKAQKPKKKHSYKTIEQNVNNLN 267
Query: 745 VSAADRKCEVDPMFQKTAASFDECSTAGVFLSTLHCHDYSSELLFPLDVQTLSTGDPPEL 924
VS ADRKCE+DPMFQKTAASFDECSTAGVFLSTLHCHDY SELLFP DVQTLST +P EL
Sbjct: 268 VSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCHDYRSELLFPSDVQTLSTEEPLEL 327
Query: 925 PNLGWGEMNRFK 960
P+LGW EM K
Sbjct: 328 PDLGWVEMTDLK 339
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,311,961
Number of extensions: 1171054
Number of successful extensions: 4452
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4441
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-014783
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029385.1| condensin complex subunit 2 [Bos taurus]. 514 e-146
>ref|NP_001029385.1| condensin complex subunit 2 [Bos taurus].
Length = 724
Score = 514 bits (1324), Expect = e-146
Identities = 254/302 (84%), Positives = 270/302 (89%)
Frame = +1
Query: 61 MGPPCPATMNKSPSETRGRPHSASSPSERVFSMPHPRKAPLSTAGTPVLEDFPQNDDEKE 240
M PPC S RGR HS +SP+E F PRKAPL+T GTPVLEDFPQNDDEKE
Sbjct: 1 MRPPC--------SGPRGRHHSTASPAEWAFPTALPRKAPLNTPGTPVLEDFPQNDDEKE 52
Query: 241 RLQRRRSRVFDLQFSTDSPRLLASPSSRNIDVSATIPKFTNTQITEHYSTCIKLSTENKI 420
+LQRRRSRVFDLQFSTDSPRLLASPS RN+++SAT+PKFTNTQITEHYSTCIKLSTENKI
Sbjct: 53 KLQRRRSRVFDLQFSTDSPRLLASPSGRNVEISATMPKFTNTQITEHYSTCIKLSTENKI 112
Query: 421 TTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGL 600
TTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVY+VLGGL
Sbjct: 113 TTKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYKVLGGL 172
Query: 601 GKDAPCPEEAEDHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCEVDP 780
GKDAP PEEAEDHGADGSA ETGT KKAPKPRKKHSCKT+EQN+NNLNVS+ADRKCEVDP
Sbjct: 173 GKDAPPPEEAEDHGADGSATETGTAKKAPKPRKKHSCKTIEQNVNNLNVSSADRKCEVDP 232
Query: 781 MFQKTAASFDECSTAGVFLSTLHCHDYSSELLFPLDVQTLSTGDPPELPNLGWGEMNRFK 960
MFQKTAASFDECSTAGVFLSTLHC DY SELLFP D+QTLS+G+PPELP+LGW EM K
Sbjct: 233 MFQKTAASFDECSTAGVFLSTLHCPDYRSELLFPADIQTLSSGEPPELPDLGWVEMTDLK 292
Query: 961 TA 966
A
Sbjct: 293 AA 294
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,487,975
Number of extensions: 1131210
Number of successful extensions: 4438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4415
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124891.2| PREDICTED: u5 small nuclear ribonucleoprotei... 371 e-103
Alignment gi|XP_003361773.1| PREDICTED: condensin complex subunit 2-like ... 113 1e-25
>ref|XP_003124891.2| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Sus scrofa].
Length = 1469
Score = 371 bits (953), Expect = e-103
Identities = 215/319 (67%), Positives = 224/319 (70%), Gaps = 35/319 (10%)
Frame = +1
Query: 1 TALRRLRARFKTGSGDSEDEMGPPCPATMNKSPSE---------TRGRPHSASSPSERVF 153
TALRRLRARFKTGSGDSEDEMGPPCP + +R R A + +
Sbjct: 686 TALRRLRARFKTGSGDSEDEMGPPCPGEAGWAGGAAGRARREWCSRHRCWRAGLSGQCEY 745
Query: 154 SMP--------------------HPRKAPLSTAGTPVLEDFPQNDDEKERLQRRRSRVFD 273
S P KAPLSTAGTPVLEDFPQNDDEKERLQRRRSRVFD
Sbjct: 746 SRPCLWLLLCQRSETLQGAERGRGGGKAPLSTAGTPVLEDFPQNDDEKERLQRRRSRVFD 805
Query: 274 LQFSTDSPRLLASPSSRNIDVSATIPKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLI 453
LQFSTDSPRLLASPSSR T P +TQ + ++ +KITTKNAFGLHLI
Sbjct: 806 LQFSTDSPRLLASPSSR------TGPAHRHTQELGAVTLDLENEEVHKITTKNAFGLHLI 859
Query: 454 DFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDAPCPEEAE 633
DFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDAPCPEEAE
Sbjct: 860 DFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDAPCPEEAE 919
Query: 634 DHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCEVDPMFQKTAASFDE 813
DHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCE AAS D
Sbjct: 920 DHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCE-----GLLAASRDL 974
Query: 814 CSTAG------VFLSTLHC 852
T G F LHC
Sbjct: 975 TLTIGERGLLLAFSRFLHC 993
>ref|XP_003361773.1| PREDICTED: condensin complex subunit 2-like [Sus scrofa].
Length = 160
Score = 113 bits (283), Expect = 1e-25
Identities = 53/60 (88%), Positives = 55/60 (91%)
Frame = +1
Query: 781 MFQKTAASFDECSTAGVFLSTLHCHDYSSELLFPLDVQTLSTGDPPELPNLGWGEMNRFK 960
MFQKTAASFDECSTAGVFLSTLHCHDYSSELLFP DVQTLSTG+PPELP+LGW EM K
Sbjct: 1 MFQKTAASFDECSTAGVFLSTLHCHDYSSELLFPSDVQTLSTGEPPELPDLGWVEMTDLK 60
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,467,047
Number of extensions: 728841
Number of successful extensions: 2812
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2802
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659067.2| condensin complex subunit 2 [Mus musculus]. 434 e-122
>ref|NP_659067.2| condensin complex subunit 2 [Mus musculus].
Length = 731
Score = 434 bits (1116), Expect = e-122
Identities = 226/293 (77%), Positives = 244/293 (83%)
Frame = +1
Query: 70 PCPATMNKSPSETRGRPHSASSPSERVFSMPHPRKAPLSTAGTPVLEDFPQNDDEKERLQ 249
P TMN S + RG+ SSP ERV P KAPL T TPVLEDFPQNDDEKER+Q
Sbjct: 4 PRSETMNSSFLKARGQQDVLSSPLERVPPASRPGKAPLGTPKTPVLEDFPQNDDEKERMQ 63
Query: 250 RRRSRVFDLQFSTDSPRLLASPSSRNIDVSATIPKFTNTQITEHYSTCIKLSTENKITTK 429
RRRSRVFDLQFSTDS L ASP+ RNIDVS TI KFTNTQITEHYSTCIKLS+ENKITTK
Sbjct: 64 RRRSRVFDLQFSTDSIHL-ASPN-RNIDVSTTISKFTNTQITEHYSTCIKLSSENKITTK 121
Query: 430 NAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKD 609
NAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKD
Sbjct: 122 NAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKD 181
Query: 610 APCPEEAEDHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCEVDPMFQ 789
P P+ E H DGS +ET TKK KP+KK SCKT+EQN++N+NVS AD KC VDPMFQ
Sbjct: 182 TP-PQGEESHSGDGSTLETERTKKPAKPKKKQSCKTIEQNLSNINVSEADGKCAVDPMFQ 240
Query: 790 KTAASFDECSTAGVFLSTLHCHDYSSELLFPLDVQTLSTGDPPELPNLGWGEM 948
KTAASFDECST GVFLSTLHC DY SELLFP D+QTLS+G+P ELP+LG+ +M
Sbjct: 241 KTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQTLSSGEPLELPDLGFVDM 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,255,199
Number of extensions: 962263
Number of successful extensions: 3594
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3577
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056156.2| condensin complex subunit 2 [Homo sapiens]. 516 e-146
>ref|NP_056156.2| condensin complex subunit 2 [Homo sapiens].
Length = 741
Score = 516 bits (1328), Expect = e-146
Identities = 260/299 (86%), Positives = 268/299 (89%)
Frame = +1
Query: 64 GPPCPATMNKSPSETRGRPHSASSPSERVFSMPHPRKAPLSTAGTPVLEDFPQNDDEKER 243
GP PATMN S SETRG PHSASSPSERVF MP PRKAPL+ GTPVLEDFPQNDDEKER
Sbjct: 5 GPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDDEKER 64
Query: 244 LQRRRSRVFDLQFSTDSPRLLASPSSRNIDVSATIPKFTNTQITEHYSTCIKLSTENKIT 423
LQRRRSRVFDLQFSTDSPRLLASPSSR+ID+SATIPKFTNTQITEHYSTCIKLSTENKIT
Sbjct: 65 LQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTENKIT 124
Query: 424 TKNAFGLHLIDFMSEILKQKDAEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLG 603
TKNAFGLHLIDFMSEILKQKD EPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLG
Sbjct: 125 TKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLG 184
Query: 604 KDAPCPEEAEDHGADGSAVETGTTKKAPKPRKKHSCKTVEQNINNLNVSAADRKCEVDPM 783
KDAP EE E H ADGSA E GTTKKA KP+KKH +T+EQNINNLNVS ADRKCE+DPM
Sbjct: 185 KDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCEIDPM 244
Query: 784 FQKTAASFDECSTAGVFLSTLHCHDYSSELLFPLDVQTLSTGDPPELPNLGWGEMNRFK 960
FQKTAASFDECSTAGVFLSTLHC DY SELLFP DVQTLSTG+P ELP LG EM K
Sbjct: 245 FQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMTDLK 303
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,486,139
Number of extensions: 1147657
Number of successful extensions: 4376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4348
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014783
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 480 e-133
gb|GL895315.2| Sus scrofa unplaced genomic scaffold ChrUScaf3199 317 6e-84
>Sscrofa_Chr03
|| Length = 144787322
Score = 480 bits (242), Expect = e-133
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 79 gccacaatgaataagtctccttcagagacccgaggacgcccccatagcgcctcctcacct 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49072356 gccacaatgaataagtctccttcagagacccgaggacgcccccatagcgcctcctcacct 49072297
Query: 139 tcggagcgggtattctccatgccccatcccaggaaggcccctctcagtactgctggcacc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49072296 tcggagcgggtattctccatgccccatcccaggaaggcccctctcagtactgctggcacc 49072237
Query: 199 ccagtccttgaagactttcctcagaatgatgacgaaaaggagcgactgcagcggaggcgc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49072236 ccagtccttgaagactttcctcagaatgatgacgaaaaggagcgactgcagcggaggcgc 49072177
Query: 259 tctagggtctttgacctgcagttcagcacagactcgcctcgtttgctggcgtccccatcc 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 49072176 tctagggtctttgacctgcagttcagcacagactcgcctcgtttgctggcgtccccgtcc 49072117
Query: 319 agcagg 324
||||||
Sbjct: 49072116 agcagg 49072111
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 508 gtggctgctggcactctggatgccagcaccaagatctatgctgtgcgtgtagatgctgtc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49070761 gtggctgctggcactctggatgccagcaccaagatctatgctgtgcgtgtagatgctgtc 49070702
Query: 568 catgccgatgtgtacagagtcctcgggggcctgggcaaggatgcaccatgtccggaagaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49070701 catgccgatgtgtacagagtcctcgggggcctgggcaaggatgcaccatgtccggaagaa 49070642
Query: 628 gcagaggaccatggtgcag 646
|||||||||||||||||||
Sbjct: 49070641 gcagaggaccatggtgcag 49070623
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 645 agatggaagtgcagttgaaacaggaacaaccaagaaggctccgaaaccaaggaagaagca 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49069969 agatggaagtgcagttgaaacaggaacaaccaagaaggctccgaaaccaaggaagaagca 49069910
Query: 705 ctcatgtaaaaccgtagagcagaatataaacaacctcaacgtatctgcagcagatcgaaa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49069909 ctcatgtaaaaccgtagagcagaatataaacaacctcaacgtatctgcagcagatcgaaa 49069850
Query: 765 gtgtgaggtg 774
||||||||||
Sbjct: 49069849 gtgtgaggtg 49069840
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 415 aaaatcactaccaagaatgcttttggcttgcacttgattgattttatgtcagagattctt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49071166 aaaatcactaccaagaatgcttttggcttgcacttgattgattttatgtcagagattctt 49071107
Query: 475 aaacagaaagatgccgaaccaaccaactttaaagt 509
|||||||||||||||||||||||||||||||||||
Sbjct: 49071106 aaacagaaagatgccgaaccaaccaactttaaagt 49071072
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 322 aggaatattgatgtttcagcaacaattcctaaatttacaaacacacaaattactgagcat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49071951 aggaatattgatgtttcagcaacaattcctaaatttacaaacacacaaattactgagcat 49071892
Query: 382 tactccacctgtatcaaactgtccactgaaaat 414
|||||||||||||||||||||||||||||||||
Sbjct: 49071891 tactccacctgtatcaaactgtccactgaaaat 49071859
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1 acagcgctccggcgtctccgcgcgcgatttaaaaccggctctggcgactccgaagacgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49084074 acagcgctccggcgtctccgcgcgcgatttaaaaccggctctggcgactccgaagacgag 49084015
Query: 61 atgggacctccttgtccgg 79
|||||||||||||||||||
Sbjct: 49084014 atgggacctccttgtccgg 49083996
>gb|GL895315.2| Sus scrofa unplaced genomic scaffold ChrUScaf3199
Length = 11802
Score = 317 bits (160), Expect = 6e-84
Identities = 185/192 (96%), Gaps = 1/192 (0%)
Strand = Plus / Plus
Query: 770 aggtggatcccatgttccagaagacggcagcctcgtttgatgagtgcagcacagcagggg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6709 aggtggatcccatgttccagaagacggcagcctcgtttgatgagtgcagcacagcagggg 6768
Query: 830 tgtttctctccaccctgcactgccacgactatagcagtgagctgctcttccccctcgatg 889
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6769 tgtttctctccaccctgcactgccacgactatagcagtgagctgctcttcccctccgatg 6828
Query: 890 tccagactctctccacgggagaccccccggagttgcccaatttaggttggggggagatga 949
|||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||
Sbjct: 6829 tccagactctctccaccggagaacccccggagttgcccgatttaggttgggtggagatg- 6887
Query: 950 accgatttaaaa 961
||||||||||||
Sbjct: 6888 accgatttaaaa 6899
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,123,918
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 7
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)