Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095975.1| RAF proto-oncogene serine/threonine-protein ... 701 0.0
Alignment gi|XP_002687048.1| PREDICTED: v-raf murine sarcoma viral oncoge... 512 e-145
Alignment gi|XP_869161.2| PREDICTED: v-raf murine sarcoma viral oncogene ... 512 e-145
Alignment gi|NP_001014964.1| serine/threonine-protein kinase A-Raf [Bos t... 504 e-143
Alignment gi|NP_001193791.1| kinase suppressor of Ras 2 [Bos taurus]. 174 2e-43
Alignment gi|XP_002695708.1| PREDICTED: kinase suppressor of ras-like [Bo... 169 6e-42
Alignment gi|XP_001788801.1| PREDICTED: kinase suppressor of ras-like [Bo... 169 6e-42
Alignment gi|NP_001071440.1| tyrosine-protein kinase Fyn [Bos taurus]. 151 2e-36
Alignment gi|NP_001104274.1| v-src sarcoma (Schmidt-Ruppin A-2) viral onc... 150 4e-36
Alignment gi|XP_002690130.1| PREDICTED: tyrosine-protein kinase FRK-like ... 150 4e-36
>ref|NP_001095975.1| RAF proto-oncogene serine/threonine-protein kinase [Bos taurus].
Length = 668
Score = 701 bits (1810), Expect = 0.0
Identities = 344/347 (99%), Positives = 344/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTP PAQRERAPGS TQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 322 PTGWSQPKTPAPAQRERAPGSSTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 381
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 382 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 441
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 442 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 501
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 502 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 561
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 562 MTGELPY
Animal-Genome cDNA 20110601C-014818
Animal-Genome cDNA 20110601C-014818
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849708.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859528.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859493.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859456.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859421.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859382.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859346.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859313.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_541762.2| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
Alignment gi|XP_859234.1| PREDICTED: similar to RAF proto-oncogene serine... 705 0.0
>ref|XP_849708.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 3 [Canis
familiaris].
Length = 645
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 299 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 358
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 359 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 418
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 419 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 478
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 479 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 538
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 621
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 622 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 668
>ref|XP_002687048.1| PREDICTED: v-raf murine sarcoma viral oncogene homolog B1 [Bos
taurus].
Length = 765
Score = 512 bits (1318), Expect = e-145
Identities = 256/342 (74%), Positives = 294/342 (85%), Gaps = 3/342 (0%)
Frame = +3
Query: 75 KTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKW 254
K+P P QRER S ++++N+++ G+RDSS WEI ++ + RIGSGSFGTVYKGKW
Sbjct: 417 KSPGP-QRERKSSSSSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKW 475
Query: 255 HGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSS 434
HGDVAVK+L V PTP+QLQAF+NEV VLRKTRHVNILLFMGY TK LAIVTQWCEGSS
Sbjct: 476 HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSS 535
Query: 435 LYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFG 614
LY HLH+ ETKF+M +LIDIARQTAQGMDYLHAK+IIHRD+KSNNIFLHE LTVKIGDFG
Sbjct: 536 LYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 595
Query: 615 LATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPY 794
LATVKSRWSGS Q EQ +GSILWMAPEVIRMQD NP+SFQSDVY++GIVLYELMTG+LPY
Sbjct: 596 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY 655
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
S+INNRDQIIFMVGRGY SPDLSK+ NCPKAMKRL+A+C+KK ++ERPLFPQIL+SIEL
Sbjct: 656 SNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIEL 715
Query: 975 LQHSLPKINRSASEPSLHRAA-HTEDIN--ACTLTTSPRLPV 1091
L SLPKI+RSASEPSL+RA TED + AC SP+ P+
Sbjct: 716 LARSLPKIHRSASEPSLNRAGFQTEDFSLYAC---ASPKTPI 754
>ref|XP_869161.2| PREDICTED: v-raf murine sarcoma viral oncogene homolog B1 isoform 2,
partial [Bos taurus].
Length = 686
Score = 512 bits (1318), Expect = e-145
Identities = 256/342 (74%), Positives = 294/342 (85%), Gaps = 3/342 (0%)
Frame = +3
Query: 75 KTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKW 254
K+P P QRER S ++++N+++ G+RDSS WEI ++ + RIGSGSFGTVYKGKW
Sbjct: 338 KSPGP-QRERKSSSSSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKW 396
Query: 255 HGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSS 434
HGDVAVK+L V PTP+QLQAF+NEV VLRKTRHVNILLFMGY TK LAIVTQWCEGSS
Sbjct: 397 HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSS 456
Query: 435 LYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFG 614
LY HLH+ ETKF+M +LIDIARQTAQGMDYLHAK+IIHRD+KSNNIFLHE LTVKIGDFG
Sbjct: 457 LYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 516
Query: 615 LATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPY 794
LATVKSRWSGS Q EQ +GSILWMAPEVIRMQD NP+SFQSDVY++GIVLYELMTG+LPY
Sbjct: 517 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY 576
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
S+INNRDQIIFMVGRGY SPDLSK+ NCPKAMKRL+A+C+KK ++ERPLFPQIL+SIEL
Sbjct: 577 SNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIEL 636
Query: 975 LQHSLPKINRSASEPSLHRAA-HTEDIN--ACTLTTSPRLPV 1091
L SLPKI+RSASEPSL+RA TED + AC SP+ P+
Sbjct: 637 LARSLPKIHRSASEPSLNRAGFQTEDFSLYAC---ASPKTPI 675
>ref|NP_001014964.1| serine/threonine-protein kinase A-Raf [Bos taurus].
Length = 606
Score = 504 bits (1299), Expect = e-143
Identities = 245/345 (71%), Positives = 289/345 (83%), Gaps = 1/345 (0%)
Frame = +3
Query: 57 TGWSQPKTPVPA-QRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
+G P + P+ QRER S +K K++ G RDS YYWE+ SEV L RIG+GSFG
Sbjct: 265 SGRKSPHSKSPSEQRERK--SLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFG 322
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TV++G+WHGDVAVK+LKV PT EQ QAF+NE+ VLRKTRHVNILLFMG+MT+ AI+T
Sbjct: 323 TVFRGRWHGDVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIIT 382
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLY HLHV +T+F M QLID+ARQTAQGMDYLHAKNIIHRD+KSNNIFLHEGLT
Sbjct: 383 QWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLT 442
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVK+RWSG+Q +EQP+GS+LWMA EVIRMQD NP+SFQSDVY+YG+VLYEL
Sbjct: 443 VKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYEL 502
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTG LPYSHI +RDQIIFMVGRGY SPDLSK+ NCPKAM+RL++DC+K +EERPLFPQ
Sbjct: 503 MTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQ 562
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLP 1088
IL++IELLQ SLPKI RSASEPSLHR +++ AC L+ + +P
Sbjct: 563 ILATIELLQRSLPKIERSASEPSLHR-TQADELPACLLSAARLVP 606
>ref|NP_001193791.1| kinase suppressor of Ras 2 [Bos taurus].
Length = 949
Score = 174 bits (441), Expect = 2e-43
Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 13/305 (4%)
Frame = +3
Query: 144 PRGQRDSSYY---WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQ 314
PR +S + W+I ++ + IG G FG VY G+WHG+VA++++ + +QL+
Sbjct: 646 PRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLK 705
Query: 315 AFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 491
AF+ EV R+TRH N++LFMG M+ +LAI+T C+G +LY + + + +
Sbjct: 706 AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQ 765
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ--- 662
IA++ +GM YLHAK I+H+D+KS N+F G V I DFGL ++ ++ ++
Sbjct: 766 IAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQAGRRDDKLRI 824
Query: 663 PTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII 824
G + +APE+IR +D PFS SDV++ G + YEL E P+ + II
Sbjct: 825 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK-TQPAEAII 883
Query: 825 FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINR 1004
+ +G G P+LS++ K + ++ C +EERP F +++ +E LPK NR
Sbjct: 884 WQMGTG-MKPNLSQI--GMGKEISDILLFCWAFEQEERPTFTKLMDMLE----KLPKRNR 936
Query: 1005 SASEP 1019
S P
Sbjct: 937 RLSHP 941
>ref|XP_002695708.1| PREDICTED: kinase suppressor of ras-like [Bos taurus].
Length = 999
Score = 169 bits (428), Expect = 6e-42
Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 11/315 (3%)
Frame = +3
Query: 108 PGSGTQEKNKIRPRGQRDSSYY--WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKIL 281
P S + I + + S Y W+I +V L IG G +G V++G+WHG+VA+++L
Sbjct: 658 PTSRRPWRGPISRKASQTSVYLQEWDIPFEQVELGEPIGQGRWGRVHRGRWHGEVAIRLL 717
Query: 282 KVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQ 458
++ + L+ F+ EV R+TRH N++LFMG M +LAI+T +C+G +L+ +
Sbjct: 718 EMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGRTLHSFVRDP 777
Query: 459 ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTV--KIGDFGLATVKS 632
+T + + IA++ +GM YLHAK I+H+D+KS N+F G V G FG++ V
Sbjct: 778 KTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVR 837
Query: 633 RWSGSQQVEQPTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPY 794
Q++ + ++APE++R +D PFS +DVY++G V YEL + P+
Sbjct: 838 EGRRENQLKLSHDWLCYLAPEIVREMTPGKDEDQLPFSKAADVYAFGTVWYELQARDWPF 897
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
+ + +I+ +G G + + K + +++ C +ERP FP ++ +E
Sbjct: 898 KN-QAAEALIWQIGSGEGMKRVLASI-SLGKEVTEILSACWAFDLQERPSFPLLMDMLE- 954
Query: 975 LQHSLPKINRSASEP 1019
LPK+NR S P
Sbjct: 955 ---KLPKLNRRLSHP 966
>ref|XP_001788801.1| PREDICTED: kinase suppressor of ras-like [Bos taurus].
Length = 999
Score = 169 bits (428), Expect = 6e-42
Identities = 101/315 (32%), Positives = 170/315 (53%), Gaps = 11/315 (3%)
Frame = +3
Query: 108 PGSGTQEKNKIRPRGQRDSSYY--WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKIL 281
P S + I + + S Y W+I +V L IG G +G V++G+WHG+VA+++L
Sbjct: 658 PTSRRPWRGPISRKASQTSVYLQEWDIPFEQVELGEPIGQGRWGRVHRGRWHGEVAIRLL 717
Query: 282 KVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQ 458
++ + L+ F+ EV R+TRH N++LFMG M +LAI+T +C+G +L+ +
Sbjct: 718 EMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGRTLHSFVRDP 777
Query: 459 ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTV--KIGDFGLATVKS 632
+T + + IA++ +GM YLHAK I+H+D+KS N+F G V G FG++ V
Sbjct: 778 KTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVR 837
Query: 633 RWSGSQQVEQPTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPY 794
Q++ + ++APE++R +D PFS +DVY++G V YEL + P+
Sbjct: 838 EGRRENQLKLSHDWLCYLAPEIVREMTPGKDEDQLPFSKAADVYAFGTVWYELQARDWPF 897
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
+ + +I+ +G G + + K + +++ C +ERP FP ++ +E
Sbjct: 898 KN-QAAEALIWQIGSGEGMKRVLASI-SLGKEVTEILSACWAFDLQERPSFPLLMDMLE- 954
Query: 975 LQHSLPKINRSASEP 1019
LPK+NR S P
Sbjct: 955 ---KLPKLNRRLSHP 966
>ref|NP_001071440.1| tyrosine-protein kinase Fyn [Bos taurus].
Length = 537
Score = 151 bits (381), Expect = 2e-36
Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 6/272 (2%)
Frame = +3
Query: 174 WEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQAFRNEVAVLRK 347
WEI + L R+G+G FG V+ G W+G+ VA+K LK +PE +F E +++K
Sbjct: 264 WEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKK 320
Query: 348 TRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDY 524
+H ++ ++++ + IVT++ SL L E + ++ L+D+A Q A GM Y
Sbjct: 321 LKHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY 380
Query: 525 LHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPTGSILWMAPEV 698
+ N IHRD++S NI + GL KI DFGLA + + ++ Q + P I W APE
Sbjct: 381 IERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFP---IKWTAPEA 437
Query: 699 IRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYK 875
F+ +SDV+S+GI+L EL+T G +PY +NNR +++ V RGY P +
Sbjct: 438 ALY---GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-EVLEQVERGYRMP----CPQ 489
Query: 876 NCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
+CP ++ L+ C KK EERP F + +E
Sbjct: 490 DCPISLHELMIHCWKKDPEERPTFEYLQGFLE 521
>ref|NP_001104274.1| v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog [Bos
taurus].
Length = 542
Score = 150 bits (378), Expect = 4e-36
Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 6/283 (2%)
Frame = +3
Query: 141 RPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQ 314
+P+ Q + WEI + L ++G G FG V+ G W+G VA+K LK +PE
Sbjct: 258 KPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE--- 314
Query: 315 AFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLID 491
AF E V++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D
Sbjct: 315 AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD 374
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQP 665
+A Q A GM Y+ N +HRD+++ NI + E L K+ DFGLA + + ++ Q + P
Sbjct: 375 MAAQIASGMAYVERMNYVHRDLRAANILVGESLVCKVADFGLARLIEDNEYTARQGAKFP 434
Query: 666 TGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 842
I W APE F+ +SDV+S+GI+L EL T G +PY + NR +++ V RG
Sbjct: 435 ---IKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG 487
Query: 843 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Y P CP+++ L+ C +K EERP F + + +E
Sbjct: 488 YRMP----CPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLE 526
>ref|XP_002690130.1| PREDICTED: tyrosine-protein kinase FRK-like [Bos taurus].
Length = 514
Score = 150 bits (378), Expect = 4e-36
Identities = 99/285 (34%), Positives = 151/285 (52%), Gaps = 14/285 (4%)
Frame = +3
Query: 135 KIRPRGQRDSSY----YWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDP 296
KI+ D SY WEI+ S + L R+GSG FG V++G W+ VAVK LK
Sbjct: 220 KIQVPAPFDLSYKTVDQWEIDRSSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSM 279
Query: 297 TPEQLQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWCEGSSLYKHLHVQE-TKF 470
P F E +++ RH ++ T +D + I+T+ SL ++L +K
Sbjct: 280 DPND---FLREAQIMKNLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDAGSKI 336
Query: 471 QMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV-----KSR 635
+ Q +D+A Q A GM YL ++N IHRD+ + N+ + E K+ DFGLA V +
Sbjct: 337 HLTQQVDMAAQVASGMAYLESQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVENEDI 396
Query: 636 WSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNR 812
+ +++ P + W APE IR N FS +SDV+S+GI+LYE++T G++PYS +
Sbjct: 397 YESKHEIKLP---VKWTAPEAIR---TNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGA 450
Query: 813 DQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLF 947
Q+I M+G+ Y P S NCP ++ +C ++RP F
Sbjct: 451 -QVIQMLGQNYRLPQPS----NCPLQFYNIMLECWNAEPKDRPTF 490
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,450,013
Number of extensions: 1892243
Number of successful extensions: 7372
Number of sequences better than 1.0e-05: 620
Number of HSP's gapped: 6420
Number of HSP's successfully gapped: 646
Length of query: 509
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,140,958
Effective search space: 5684665116
Effective search space used: 5684665116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 539 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 598
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 599 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 645
>ref|XP_859528.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 11 [Canis
familiaris].
Length = 615
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 269 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 328
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 329 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 388
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 389 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 448
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 449 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 508
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 509 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 568
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 569 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 615
>ref|XP_859493.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 10 [Canis
familiaris].
Length = 665
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 319 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 378
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 379 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 438
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 439 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 498
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 499 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 558
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 559 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 618
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 619 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 665
>ref|XP_859456.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 9 [Canis
familiaris].
Length = 630
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 284 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 343
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 344 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 403
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 404 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 463
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 464 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 523
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 524 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 583
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 584 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 630
>ref|XP_859421.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 8 [Canis
familiaris].
Length = 652
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 306 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 365
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 366 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 425
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 426 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 485
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 486 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 545
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 546 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 605
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 606 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 652
>ref|XP_859382.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 7 [Canis
familiaris].
Length = 653
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 307 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 366
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 367 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 426
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 427 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 486
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 487 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 546
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 547 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 606
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 607 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 653
>ref|XP_859346.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 6 [Canis
familiaris].
Length = 632
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 286 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 345
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 346 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 405
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 406 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 465
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 466 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 525
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 526 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 585
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 586 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 632
>ref|XP_859313.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 5 [Canis
familiaris].
Length = 654
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 308 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 367
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 368 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 427
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 428 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 487
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 488 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 547
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 548 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 607
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 608 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 654
>ref|XP_541762.2| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 2 [Canis
familiaris].
Length = 648
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 302 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 361
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 362 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 421
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 422 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 481
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 482 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 541
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 542 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 601
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 602 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 648
>ref|XP_859234.1| PREDICTED: similar to RAF proto-oncogene serine/threonine-protein
kinase (Raf-1) (C-RAF) (cRaf) isoform 4 [Canis
familiaris].
Length = 648
Score = 705 bits (1820), Expect = 0.0
Identities = 346/347 (99%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 302 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 361
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 362 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 421
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 422 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 481
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 482 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 541
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 542 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 601
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 602 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 648
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,020,404
Number of extensions: 1930127
Number of successful extensions: 7912
Number of sequences better than 1.0e-05: 893
Number of HSP's gapped: 6597
Number of HSP's successfully gapped: 913
Length of query: 509
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 402
Effective length of database: 15,307,552
Effective search space: 6153635904
Effective search space used: 6153635904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134658.1| PREDICTED: serine/threonine-protein kinase B... 512 e-145
Alignment gi|NP_999494.1| serine/threonine-protein kinase A-Raf [Sus scro... 504 e-143
Alignment gi|XP_003360338.1| PREDICTED: serine/threonine-protein kinase A... 465 e-131
Alignment gi|XP_003132939.2| PREDICTED: kinase suppressor of Ras 2 [Sus s... 173 3e-43
Alignment gi|NP_001073675.2| tyrosine-protein kinase Fyn [Sus scrofa]. 151 1e-36
Alignment gi|XP_001928649.1| PREDICTED: proto-oncogene tyrosine-protein k... 150 2e-36
Alignment gi|XP_001925827.2| PREDICTED: tyrosine-protein kinase FRK [Sus ... 149 3e-36
Alignment gi|NP_001182264.1| ephrin type-A receptor 3 [Sus scrofa]. 144 1e-34
Alignment gi|XP_003127734.2| PREDICTED: ephrin type-A receptor 8 [Sus scr... 139 3e-33
Alignment gi|NP_001137185.1| tyrosine-protein kinase Lck [Sus scrofa]. 139 6e-33
>ref|XP_003134658.1| PREDICTED: serine/threonine-protein kinase B-raf, partial [Sus
scrofa].
Length = 720
Score = 512 bits (1318), Expect = e-145
Identities = 256/342 (74%), Positives = 294/342 (85%), Gaps = 3/342 (0%)
Frame = +3
Query: 75 KTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKW 254
K+P P QRER S ++++N+++ G+RDSS WEI ++ + RIGSGSFGTVYKGKW
Sbjct: 372 KSPGP-QRERKSSSSSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKW 430
Query: 255 HGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSS 434
HGDVAVK+L V PTP+QLQAF+NEV VLRKTRHVNILLFMGY TK LAIVTQWCEGSS
Sbjct: 431 HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSS 490
Query: 435 LYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFG 614
LY HLH+ ETKF+M +LIDIARQTAQGMDYLHAK+IIHRD+KSNNIFLHE LTVKIGDFG
Sbjct: 491 LYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 550
Query: 615 LATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPY 794
LATVKSRWSGS Q EQ +GSILWMAPEVIRMQD NP+SFQSDVY++GIVLYELMTG+LPY
Sbjct: 551 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY 610
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
S+INNRDQIIFMVGRGY SPDLSK+ NCPKAMKRL+A+C+KK ++ERPLFPQIL+SIEL
Sbjct: 611 SNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIEL 670
Query: 975 LQHSLPKINRSASEPSLHRAA-HTEDIN--ACTLTTSPRLPV 1091
L SLPKI+RSASEPSL+RA TED + AC SP+ P+
Sbjct: 671 LARSLPKIHRSASEPSLNRAGFQTEDFSLYAC---ASPKTPI 709
>ref|NP_999494.1| serine/threonine-protein kinase A-Raf [Sus scrofa].
Length = 606
Score = 504 bits (1299), Expect = e-143
Identities = 245/345 (71%), Positives = 289/345 (83%), Gaps = 1/345 (0%)
Frame = +3
Query: 57 TGWSQPKTPVPA-QRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
+G P + P+ QRER S +K K++ G RDS YYWE+ SEV L RIG+GSFG
Sbjct: 265 SGRKSPHSKSPSEQRERK--SLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFG 322
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TV++G+WHGDVAVK+LKV PT EQ QAF+NE+ VLRKTRHVNILLFMG+MT+ AI+T
Sbjct: 323 TVFRGRWHGDVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIIT 382
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLY HLHV +T+F M QLID+ARQTAQGMDYLHAKNIIHRD+KSNNIFLHEGLT
Sbjct: 383 QWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLT 442
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVK+RWSG+Q +EQP+GS+LWMA EVIRMQD NP+SFQSDVY+YG+VLYEL
Sbjct: 443 VKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYEL 502
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTG LPYSHI +RDQIIFMVGRGY SPDLSK+ NCPKAM+RL++DC+K +EERPLFPQ
Sbjct: 503 MTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQ 562
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLP 1088
IL++IELLQ SLPKI RSASEPSLHR +++ AC L+ + +P
Sbjct: 563 ILATIELLQRSLPKIERSASEPSLHR-TQADELPACLLSAARLVP 606
>ref|XP_003360338.1| PREDICTED: serine/threonine-protein kinase A-Raf-like [Sus scrofa].
Length = 606
Score = 465 bits (1196), Expect = e-131
Identities = 228/345 (66%), Positives = 273/345 (79%), Gaps = 1/345 (0%)
Frame = +3
Query: 57 TGWSQPKTPVPA-QRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
+G P + P+ QRER S +K K++ G RDS YYWE+ SEV L RIG+GSFG
Sbjct: 265 SGRKSPHSKSPSEQRERK--SLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFG 322
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TV++G+WHGDVAVK+LKV PT EQ QAF+NE+ VLRKTRHVNILLFMG+MT+ AI+T
Sbjct: 323 TVFRGRWHGDVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIIT 382
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLY HLHV +T+F M QLID+ARQTAQGMDYLHAKNIIHRD+KSN+IFLHEGLT
Sbjct: 383 QWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNSIFLHEGLT 442
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVK+RWSG+Q +EQP+GS+LWMA EVIRMQD NP+SFQSDVY+YG+VLYEL
Sbjct: 443 VKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYEL 502
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTG LPYSHI +RDQIIFMVGRGY SPDLSK+ NCPKAM+RL++DC+K +EERPLFPQ
Sbjct: 503 MTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQ 562
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLP 1088
+ L + R A E HR +++ AC L+ + +P
Sbjct: 563 VGQGGGLDYLGRKLLRRKALEXXXHR-TQADELPACLLSAARLVP 606
>ref|XP_003132939.2| PREDICTED: kinase suppressor of Ras 2 [Sus scrofa].
Length = 651
Score = 173 bits (438), Expect = 3e-43
Identities = 106/305 (34%), Positives = 168/305 (55%), Gaps = 13/305 (4%)
Frame = +3
Query: 144 PRGQRDSSYY---WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQ 314
PR +S + W+I ++ + IG G FG VY G+WHG+VA++++ + EQL+
Sbjct: 348 PRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEEQLK 407
Query: 315 AFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 491
AF+ EV R+TRH N++LFMG M+ +LAI+T C+G +LY + + + +
Sbjct: 408 AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQ 467
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ--- 662
IA++ + M YLHAK I+H+D+KS N+F G V I DFGL ++ ++ ++
Sbjct: 468 IAQEIVKAMGYLHAKGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQAGRRDDKLRI 526
Query: 663 PTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII 824
G + +APE+IR +D PFS SDV++ G + YEL E P+ + II
Sbjct: 527 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK-TQPAEAII 585
Query: 825 FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINR 1004
+ +G G P+LS++ K + ++ C +EERP F +++ +E LPK NR
Sbjct: 586 WQMGTG-MKPNLSQI--GMGKEISDILLFCWAFEQEERPTFTKLMDMLE----KLPKRNR 638
Query: 1005 SASEP 1019
S P
Sbjct: 639 RLSHP 643
>ref|NP_001073675.2| tyrosine-protein kinase Fyn [Sus scrofa].
Length = 537
Score = 151 bits (381), Expect = 1e-36
Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 6/272 (2%)
Frame = +3
Query: 174 WEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQAFRNEVAVLRK 347
WEI + L R+G+G FG V+ G W+G+ VA+K LK +PE +F E +++K
Sbjct: 264 WEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKK 320
Query: 348 TRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDY 524
+H ++ ++++ + IVT++ SL L E + ++ L+D+A Q A GM Y
Sbjct: 321 LKHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY 380
Query: 525 LHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPTGSILWMAPEV 698
+ N IHRD++S NI + GL KI DFGLA + + ++ Q + P I W APE
Sbjct: 381 IERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFP---IKWTAPEA 437
Query: 699 IRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYK 875
F+ +SDV+S+GI+L EL+T G +PY +NNR +++ V RGY P +
Sbjct: 438 ALY---GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-EVLEQVERGYRMP----CPQ 489
Query: 876 NCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
+CP ++ L+ C KK EERP F + +E
Sbjct: 490 DCPISLHELMIHCWKKDPEERPTFEYLQGFLE 521
>ref|XP_001928649.1| PREDICTED: proto-oncogene tyrosine-protein kinase Src [Sus scrofa].
Length = 542
Score = 150 bits (378), Expect = 2e-36
Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 6/283 (2%)
Frame = +3
Query: 141 RPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQ 314
+P+ Q + WEI + L ++G G FG V+ G W+G VA+K LK +PE
Sbjct: 258 KPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE--- 314
Query: 315 AFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLID 491
AF E V++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D
Sbjct: 315 AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD 374
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQP 665
+A Q A GM Y+ N +HRD+++ NI + E L K+ DFGLA + + ++ Q + P
Sbjct: 375 MAAQIASGMAYVERMNYVHRDLRAANILVGENLACKVADFGLARLIEDNEYTARQGAKFP 434
Query: 666 TGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 842
I W APE F+ +SDV+S+GI+L EL T G +PY + NR +++ V RG
Sbjct: 435 ---IKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG 487
Query: 843 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Y P CP+++ L+ C +K EERP F + + +E
Sbjct: 488 YRMP----CPPECPESLHDLMCQCWRKDPEERPTFEYLQAFLE 526
>ref|XP_001925827.2| PREDICTED: tyrosine-protein kinase FRK [Sus scrofa].
Length = 511
Score = 149 bits (377), Expect = 3e-36
Identities = 97/288 (33%), Positives = 153/288 (53%), Gaps = 14/288 (4%)
Frame = +3
Query: 135 KIRPRGQRDSSY----YWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDP 296
KI+ D SY WEI+ + + L R+GSG FG V++G W+ VAVK LK
Sbjct: 219 KIQVPATIDLSYKTADQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSM 278
Query: 297 TPEQLQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWCEGSSLYKHLHVQE-TKF 470
P F E +++ RH ++ T +D + I+T+ SL ++L +K
Sbjct: 279 DPND---FLREAQIMKNLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDAGSKI 335
Query: 471 QMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV-----KSR 635
+ Q +D+A Q A GM YL ++N IHRD+ + N+ + E K+ DFGLA V +
Sbjct: 336 HLTQQVDMAAQVASGMAYLESQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDI 395
Query: 636 WSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNR 812
+ +++ P + W APE IR N FS +SDV+S+G++LYE++T G++PYS +
Sbjct: 396 YESKHEIKLP---VKWTAPEAIRA---NKFSIKSDVWSFGVLLYEIITYGKMPYSGMTGA 449
Query: 813 DQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI 956
Q+I M+G+ Y P + NCP ++ +C + +ERP F +
Sbjct: 450 -QVIQMLGQNYRLPQPA----NCPPEFYNIMLECWNEEPKERPTFEML 492
>ref|NP_001182264.1| ephrin type-A receptor 3 [Sus scrofa].
Length = 984
Score = 144 bits (364), Expect = 1e-34
Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 12/294 (4%)
Frame = +3
Query: 177 EIEASEVMLSTRIGSGSFGTVYKG------KWHGDVAVKILKVVDPTPEQLQAFRNEVAV 338
E++A+ + + +G+G FG V G K VA+K LKV T +Q + F E ++
Sbjct: 616 ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKV-GYTEKQRRDFLGEASI 674
Query: 339 LRKTRHVNILLFMGYMTKDN-LAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQG 515
+ + H NI+ G +TK + IVT++ E SL L + +F + QL+ + R A G
Sbjct: 675 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 734
Query: 516 MDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV-KSRWSGSQQVEQPTGSILWMAP 692
M YL +HRD+ + NI ++ L K+ DFGL+ V + + I W +P
Sbjct: 735 MKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSP 794
Query: 693 EVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKL 869
E I + F+ SDV+SYGIVL+E+M+ GE PY ++N+D +I V GY P
Sbjct: 795 EAIAYR---KFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD-VIKAVDEGYRLPP---- 846
Query: 870 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL---QHSLPKINRSASEPS 1022
+CP A+ +L+ DC +K + RP F QI+S ++ L SL I +A+ PS
Sbjct: 847 PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLKIITSAAARPS 900
>ref|XP_003127734.2| PREDICTED: ephrin type-A receptor 8 [Sus scrofa].
Length = 1005
Score = 139 bits (351), Expect = 3e-33
Identities = 107/331 (32%), Positives = 159/331 (48%), Gaps = 16/331 (4%)
Frame = +3
Query: 69 QPKTPVPAQRERAPGSGTQEKNKIRPR-----GQRDSSYYWEIEASEVMLSTRIGSGSFG 233
Q PV R PG + + P G+ EIEAS + + IGSG G
Sbjct: 588 QAPPPVFLPLHRPPGKIPEPQFYAEPHTYEEPGRAGRGSTREIEASRIHIEKIIGSGESG 647
Query: 234 TVYKGKWHGD------VAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKD 395
V G+ VA+K LK T Q + F +E +++ + H NI+ G +T+
Sbjct: 648 EVCYGRLRVPGQRDVPVAIKALKA-GYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG 706
Query: 396 NLA-IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNI 572
LA IVT++ E SL L + +F + QL+ + R GM YL +HRD+ + N+
Sbjct: 707 RLAMIVTEYMENGSLDAFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNV 766
Query: 573 FLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGS---ILWMAPEVIRMQDNNPFSFQSDV 743
+ L K+ DFGL+ V TG I W APE I + FS SDV
Sbjct: 767 LVDGNLVCKVSDFGLSRVLE--DDPDAAYTTTGGKIPIRWTAPEAIAFR---TFSSASDV 821
Query: 744 YSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVK 920
+S+G+V++E++ GE PY ++ NRD +I V GY P CP A+ +L+ DC
Sbjct: 822 WSFGVVMWEVLAYGERPYWNMTNRD-VISSVEEGYRLP----APMGCPHALHQLMLDCWH 876
Query: 921 KVKEERPLFPQILSSIELLQHSLPKINRSAS 1013
K + +RP F QI+S ++ L S + +A+
Sbjct: 877 KDRAQRPRFSQIVSVLDALIRSPESLRATAT 907
>ref|NP_001137185.1| tyrosine-protein kinase Lck [Sus scrofa].
Length = 509
Score = 139 bits (349), Expect = 6e-33
Identities = 92/274 (33%), Positives = 154/274 (56%), Gaps = 8/274 (2%)
Frame = +3
Query: 174 WEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQAFRNEVAVLRK 347
WE+ + L R+G+G FG V+ G ++G VAVK LK +P+ AF E ++++
Sbjct: 238 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPD---AFLAEANLMKQ 294
Query: 348 TRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDY 524
+H ++ +T++ + I+T++ E SL L K + +L+D+A Q A+GM +
Sbjct: 295 LQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTSTGIKLTINKLLDMAAQIAEGMAF 354
Query: 525 LHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPTGSILWMAPEV 698
+ +N IHRD+++ NI + + L+ KI DFGLA + + ++ + + P I W APE
Sbjct: 355 IEDRNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP---IKWTAPEA 411
Query: 699 IRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGY--ASPDLSKL 869
I + F+ +SDV+S+GI+L E++T G +PY + N ++I + RGY PD
Sbjct: 412 I---NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-TEVIQNLERGYRMVRPD---- 463
Query: 870 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
NCP+ + L+ C K+ EERP F + S +E
Sbjct: 464 --NCPEELYHLMMLCWKERPEERPTFDYMRSVLE 495
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,496,343
Number of extensions: 1214147
Number of successful extensions: 4820
Number of sequences better than 1.0e-05: 428
Number of HSP's gapped: 4229
Number of HSP's successfully gapped: 436
Length of query: 509
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 406
Effective length of database: 8,779,541
Effective search space: 3564493646
Effective search space used: 3564493646
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084056.1| RAF proto-oncogene serine/threonine-protein kin... 700 0.0
Alignment gi|NP_033833.1| serine/threonine-protein kinase A-Raf isoform 1... 508 e-144
Alignment gi|NP_647455.3| serine/threonine-protein kinase B-raf [Mus musc... 506 e-143
Alignment gi|NP_001108017.1| kinase suppressor of Ras 2 isoform 1 [Mus mu... 174 2e-43
Alignment gi|NP_038599.1| kinase suppressor of Ras 1 [Mus musculus]. 168 1e-41
Alignment gi|NP_001116365.1| tyrosine-protein kinase Fyn isoform a [Mus m... 151 2e-36
Alignment gi|NP_001192062.1| tyrosine-protein kinase Yes [Mus musculus]. 149 6e-36
Alignment gi|NP_001192061.1| tyrosine-protein kinase Yes [Mus musculus]. 149 6e-36
Alignment gi|NP_033561.1| tyrosine-protein kinase Yes [Mus musculus]. 149 6e-36
Alignment gi|NP_001020566.1| neuronal proto-oncogene tyrosine-protein kin... 149 6e-36
>ref|NP_084056.1| RAF proto-oncogene serine/threonine-protein kinase [Mus musculus].
Length = 648
Score = 700 bits (1807), Expect = 0.0
Identities = 342/347 (98%), Positives = 346/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 302 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 361
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 362 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 421
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 422 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 481
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGS+LWMAPEVIRMQD+NPFSFQSDVYSYGIVLYEL
Sbjct: 482 VKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDDNPFSFQSDVYSYGIVLYEL 541
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
M GELPY+HINNRDQIIFMVGRGYASPDLS+LYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 542 MAGELPYAHINNRDQIIFMVGRGYASPDLSRLYKNCPKAMKRLVADCVKKVKEERPLFPQ 601
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 602 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 648
>ref|NP_033833.1| serine/threonine-protein kinase A-Raf isoform 1 [Mus musculus].
Length = 604
Score = 508 bits (1309), Expect = e-144
Identities = 246/345 (71%), Positives = 290/345 (84%), Gaps = 1/345 (0%)
Frame = +3
Query: 57 TGWSQPKTPVPA-QRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
+G P + +P+ QRER S EK K++ G RDS YYWE+ SEV L RIG+GSFG
Sbjct: 263 SGRKSPHSKLPSEQRERK--SLADEKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFG 320
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TV++G+WHGDVAVK+LKV PT EQ QAF+NE+ VLRKTRHVNILLFMG+MT+ AI+T
Sbjct: 321 TVFRGRWHGDVAVKVLKVAQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIIT 380
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLY HLHV +T+F M QLID+ARQTAQGMDYLHAKNIIHRD+KSNNIFLHEGLT
Sbjct: 381 QWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLT 440
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVK+RWSG+Q +EQP+GS+LWMA EVIRMQD NP+SFQSDVY+YG+VLYEL
Sbjct: 441 VKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYEL 500
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTG LPYSHI +RDQIIFMVGRGY SPDLSK++ NCPKAM+RL+ DC+K +EERPLFPQ
Sbjct: 501 MTGSLPYSHIGSRDQIIFMVGRGYLSPDLSKIFSNCPKAMRRLLTDCLKFQREERPLFPQ 560
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLP 1088
IL++IELLQ SLPKI RSASEPSLHR +++ AC L+ + +P
Sbjct: 561 ILATIELLQRSLPKIERSASEPSLHR-TQADELPACLLSAARLVP 604
>ref|NP_647455.3| serine/threonine-protein kinase B-raf [Mus musculus].
Length = 804
Score = 506 bits (1302), Expect = e-143
Identities = 255/344 (74%), Positives = 295/344 (85%), Gaps = 5/344 (1%)
Frame = +3
Query: 75 KTPVPAQRER--APGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKG 248
K+P P QRER + S ++++++++ G+RDSS WEI ++ + RIGSGSFGTVYKG
Sbjct: 453 KSPGP-QRERKSSSSSSSEDRSRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKG 511
Query: 249 KWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEG 428
KWHGDVAVK+L V PTP+QLQAF+NEV VLRKTRHVNILLFMGY TK LAIVTQWCEG
Sbjct: 512 KWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEG 571
Query: 429 SSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGD 608
SSLY HLH+ ETKF+M +LIDIARQTAQGMDYLHAK+IIHRD+KSNNIFLHE LTVKIGD
Sbjct: 572 SSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGD 631
Query: 609 FGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGEL 788
FGLATVKSRWSGS Q EQ +GSILWMAPEVIRMQD NP+SFQSDVY++GIVLYELMTG+L
Sbjct: 632 FGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 691
Query: 789 PYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSI 968
PYS+INNRDQIIFMVGRGY SPDLSK+ NCPKAMKRL+A+C+KK ++ERPLFPQIL+SI
Sbjct: 692 PYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASI 751
Query: 969 ELLQHSLPKINRSASEPSLHRAA-HTEDIN--ACTLTTSPRLPV 1091
ELL SLPKI+RSASEPSL+RA TED + AC SP+ P+
Sbjct: 752 ELLARSLPKIHRSASEPSLNRAGFQTEDFSLYAC---ASPKTPI 792
>ref|NP_001108017.1| kinase suppressor of Ras 2 isoform 1 [Mus musculus].
Length = 951
Score = 174 bits (441), Expect = 2e-43
Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 13/305 (4%)
Frame = +3
Query: 144 PRGQRDSSYY---WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQ 314
PR +S + W+I ++ + IG G FG VY G+WHG+VA++++ + +QL+
Sbjct: 647 PRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLK 706
Query: 315 AFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 491
AF+ EV R+TRH N++LFMG M+ +LAI+T C+G +LY + + + +
Sbjct: 707 AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQ 766
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ--- 662
IA++ +GM YLHAK I+H+D+KS N+F G V I DFGL ++ ++ ++
Sbjct: 767 IAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQAGRRDDKLRI 825
Query: 663 PTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII 824
G + +APE+IR +D PFS SDV++ G + YEL E P+ + II
Sbjct: 826 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK-TQPAEAII 884
Query: 825 FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINR 1004
+ +G G P+LS++ K + ++ C +EERP F +++ +E LPK NR
Sbjct: 885 WQMGTG-MKPNLSQI--GMGKEISDILLFCWAFEQEERPTFTKLMDMLE----KLPKRNR 937
Query: 1005 SASEP 1019
S P
Sbjct: 938 RLSHP 942
>ref|NP_038599.1| kinase suppressor of Ras 1 [Mus musculus].
Length = 873
Score = 168 bits (425), Expect = 1e-41
Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 17/321 (5%)
Frame = +3
Query: 108 PGSGTQEKNKIRPRGQRDSSYY--WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKIL 281
P S + I + + S Y W+I +V L IG G +G V++G+WHG+VA+++L
Sbjct: 532 PSSRRPWRGPISRKASQTSVYLQEWDIPFEQVELGEPIGQGRWGRVHRGRWHGEVAIRLL 591
Query: 282 KVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQ 458
++ + L+ F+ EV R+TRH N++LFMG M +LAI+T +C+G +L+ +
Sbjct: 592 EMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGRTLHSFVRDP 651
Query: 459 ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTV--KIGDFGLATVKS 632
+T + + IA++ +GM YLHAK I+H+D+KS N+F G V G FG++ V
Sbjct: 652 KTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVR 711
Query: 633 RWSGSQQVEQPTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPY 794
Q++ + ++APE++R +D PFS +DVY++G V YEL + P+
Sbjct: 712 EERRENQLKLSHDWLCYLAPEIVREMIPGRDEDQLPFSKAADVYAFGTVWYELQARDWPF 771
Query: 795 SHINNRDQIIFMVGRG------YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI 956
H + +I+ +G G AS L K + +++ C +ERP F +
Sbjct: 772 KH-QPAEALIWQIGSGEGVRRVLASVSLG-------KEVGEILSACWAFDLQERPSFSLL 823
Query: 957 LSSIELLQHSLPKINRSASEP 1019
+ +E LPK+NR S P
Sbjct: 824 MDMLE----RLPKLNRRLSHP 840
>ref|NP_001116365.1| tyrosine-protein kinase Fyn isoform a [Mus musculus].
Length = 537
Score = 151 bits (381), Expect = 2e-36
Identities = 97/272 (35%), Positives = 151/272 (55%), Gaps = 6/272 (2%)
Frame = +3
Query: 174 WEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQAFRNEVAVLRK 347
WEI + L R+G+G FG V+ G W+G+ VA+K LK +PE +F E +++K
Sbjct: 264 WEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKK 320
Query: 348 TRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDY 524
+H ++ ++++ + IVT++ SL L E + ++ L+D+A Q A GM Y
Sbjct: 321 LKHDKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY 380
Query: 525 LHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPTGSILWMAPEV 698
+ N IHRD++S NI + GL KI DFGLA + + ++ Q + P I W APE
Sbjct: 381 IERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFP---IKWTAPEA 437
Query: 699 IRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYK 875
F+ +SDV+S+GI+L EL+T G +PY +NNR +++ V RGY P +
Sbjct: 438 ALY---GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-EVLEQVERGYRMP----CPQ 489
Query: 876 NCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
+CP ++ L+ C KK EERP F + +E
Sbjct: 490 DCPISLHELMIHCWKKDPEERPTFEYLQGFLE 521
>ref|NP_001192062.1| tyrosine-protein kinase Yes [Mus musculus].
Length = 541
Score = 149 bits (376), Expect = 6e-36
Identities = 96/282 (34%), Positives = 153/282 (54%), Gaps = 4/282 (1%)
Frame = +3
Query: 138 IRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQA 317
++P+ Q + WEI + L ++G G FG V+ G W+G V I K + P +A
Sbjct: 256 VKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAI-KTLKPGTMMPEA 314
Query: 318 FRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLIDI 494
F E +++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D+
Sbjct: 315 FLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMSKGSLLDFLKEGDGKYLKLPQLVDM 374
Query: 495 ARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPT 668
A Q A GM Y+ N IHRD+++ NI + E L KI DFGLA + + ++ Q + P
Sbjct: 375 AAQIADGMAYIERMNYIHRDLRAANILVGENLICKIADFGLARLIEDNEYTARQGAKFP- 433
Query: 669 GSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGY 845
I W APE F+ +SDV+S+GI+ EL+T G +PY + NR +++ V RGY
Sbjct: 434 --IKWTAPEAALY---GRFTIKSDVWSFGILQTELVTKGRVPYPGMVNR-EVLEQVERGY 487
Query: 846 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
P + CP+++ L+ C KK +ERP F I S +E
Sbjct: 488 RMP----CPQGCPESLHELMNLCWKKDPDERPTFEYIQSFLE 525
>ref|NP_001192061.1| tyrosine-protein kinase Yes [Mus musculus].
Length = 541
Score = 149 bits (376), Expect = 6e-36
Identities = 96/282 (34%), Positives = 153/282 (54%), Gaps = 4/282 (1%)
Frame = +3
Query: 138 IRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQA 317
++P+ Q + WEI + L ++G G FG V+ G W+G V I K + P +A
Sbjct: 256 VKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAI-KTLKPGTMMPEA 314
Query: 318 FRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLIDI 494
F E +++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D+
Sbjct: 315 FLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMSKGSLLDFLKEGDGKYLKLPQLVDM 374
Query: 495 ARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPT 668
A Q A GM Y+ N IHRD+++ NI + E L KI DFGLA + + ++ Q + P
Sbjct: 375 AAQIADGMAYIERMNYIHRDLRAANILVGENLICKIADFGLARLIEDNEYTARQGAKFP- 433
Query: 669 GSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGY 845
I W APE F+ +SDV+S+GI+ EL+T G +PY + NR +++ V RGY
Sbjct: 434 --IKWTAPEAALY---GRFTIKSDVWSFGILQTELVTKGRVPYPGMVNR-EVLEQVERGY 487
Query: 846 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
P + CP+++ L+ C KK +ERP F I S +E
Sbjct: 488 RMP----CPQGCPESLHELMNLCWKKDPDERPTFEYIQSFLE 525
>ref|NP_033561.1| tyrosine-protein kinase Yes [Mus musculus].
Length = 541
Score = 149 bits (376), Expect = 6e-36
Identities = 96/282 (34%), Positives = 153/282 (54%), Gaps = 4/282 (1%)
Frame = +3
Query: 138 IRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQA 317
++P+ Q + WEI + L ++G G FG V+ G W+G V I K + P +A
Sbjct: 256 VKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAI-KTLKPGTMMPEA 314
Query: 318 FRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLIDI 494
F E +++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D+
Sbjct: 315 FLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMSKGSLLDFLKEGDGKYLKLPQLVDM 374
Query: 495 ARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPT 668
A Q A GM Y+ N IHRD+++ NI + E L KI DFGLA + + ++ Q + P
Sbjct: 375 AAQIADGMAYIERMNYIHRDLRAANILVGENLICKIADFGLARLIEDNEYTARQGAKFP- 433
Query: 669 GSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGY 845
I W APE F+ +SDV+S+GI+ EL+T G +PY + NR +++ V RGY
Sbjct: 434 --IKWTAPEAALY---GRFTIKSDVWSFGILQTELVTKGRVPYPGMVNR-EVLEQVERGY 487
Query: 846 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
P + CP+++ L+ C KK +ERP F I S +E
Sbjct: 488 RMP----CPQGCPESLHELMNLCWKKDPDERPTFEYIQSFLE 525
>ref|NP_001020566.1| neuronal proto-oncogene tyrosine-protein kinase Src isoform 2 [Mus
musculus].
Length = 535
Score = 149 bits (376), Expect = 6e-36
Identities = 96/283 (33%), Positives = 154/283 (54%), Gaps = 6/283 (2%)
Frame = +3
Query: 141 RPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQ 314
+P+ Q + WEI + L ++G G FG V+ G W+G VA+K LK +PE
Sbjct: 251 KPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE--- 307
Query: 315 AFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLID 491
AF E V++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D
Sbjct: 308 AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVD 367
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQP 665
++ Q A GM Y+ N +HRD+++ NI + E L K+ DFGLA + + ++ Q + P
Sbjct: 368 MSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 427
Query: 666 TGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 842
I W APE F+ +SDV+S+GI+L EL T G +PY + NR +++ V RG
Sbjct: 428 ---IKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG 480
Query: 843 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Y P CP+++ L+ C +K EERP F + + +E
Sbjct: 481 YRMP----CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 519
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,036,332
Number of extensions: 1616388
Number of successful extensions: 6456
Number of sequences better than 1.0e-05: 685
Number of HSP's gapped: 5407
Number of HSP's successfully gapped: 699
Length of query: 509
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 403
Effective length of database: 12,433,743
Effective search space: 5010798429
Effective search space used: 5010798429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002871.1| RAF proto-oncogene serine/threonine-protein kin... 701 0.0
Alignment gi|NP_004324.2| serine/threonine-protein kinase B-raf [Homo sap... 512 e-145
Alignment gi|NP_001645.1| serine/threonine-protein kinase A-Raf [Homo sap... 503 e-142
Alignment gi|NP_775869.3| kinase suppressor of Ras 2 [Homo sapiens]. 174 2e-43
Alignment gi|NP_055053.1| kinase suppressor of Ras 1 [Homo sapiens]. 164 2e-40
Alignment gi|NP_002028.1| tyrosine-protein kinase Fyn isoform a [Homo sap... 152 6e-37
Alignment gi|NP_938033.1| proto-oncogene tyrosine-protein kinase Src [Hom... 150 3e-36
Alignment gi|NP_005408.1| proto-oncogene tyrosine-protein kinase Src [Hom... 150 3e-36
Alignment gi|NP_002022.1| tyrosine-protein kinase FRK [Homo sapiens]. 150 4e-36
Alignment gi|NP_005424.1| tyrosine-protein kinase Yes [Homo sapiens]. 149 5e-36
>ref|NP_002871.1| RAF proto-oncogene serine/threonine-protein kinase [Homo sapiens].
Length = 648
Score = 701 bits (1810), Expect = 0.0
Identities = 344/347 (99%), Positives = 345/347 (99%)
Frame = +3
Query: 54 PTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
PTGWSQPKTPVPAQRERAP SGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG
Sbjct: 302 PTGWSQPKTPVPAQRERAPVSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 361
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TVYKGKWHGDVAVKILKVVDPTPEQ QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT
Sbjct: 362 TVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 421
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT
Sbjct: 422 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 481
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVKSRWSGSQQVEQPTGS+LWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL
Sbjct: 482 VKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 541
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ
Sbjct: 542 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 601
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 1094
ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
Sbjct: 602 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF 648
>ref|NP_004324.2| serine/threonine-protein kinase B-raf [Homo sapiens].
Length = 766
Score = 512 bits (1318), Expect = e-145
Identities = 256/342 (74%), Positives = 294/342 (85%), Gaps = 3/342 (0%)
Frame = +3
Query: 75 KTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKW 254
K+P P QRER S ++++N+++ G+RDSS WEI ++ + RIGSGSFGTVYKGKW
Sbjct: 418 KSPGP-QRERKSSSSSEDRNRMKTLGRRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKW 476
Query: 255 HGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSS 434
HGDVAVK+L V PTP+QLQAF+NEV VLRKTRHVNILLFMGY TK LAIVTQWCEGSS
Sbjct: 477 HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQLAIVTQWCEGSS 536
Query: 435 LYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFG 614
LY HLH+ ETKF+M +LIDIARQTAQGMDYLHAK+IIHRD+KSNNIFLHE LTVKIGDFG
Sbjct: 537 LYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFG 596
Query: 615 LATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPY 794
LATVKSRWSGS Q EQ +GSILWMAPEVIRMQD NP+SFQSDVY++GIVLYELMTG+LPY
Sbjct: 597 LATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY 656
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
S+INNRDQIIFMVGRGY SPDLSK+ NCPKAMKRL+A+C+KK ++ERPLFPQIL+SIEL
Sbjct: 657 SNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIEL 716
Query: 975 LQHSLPKINRSASEPSLHRAA-HTEDIN--ACTLTTSPRLPV 1091
L SLPKI+RSASEPSL+RA TED + AC SP+ P+
Sbjct: 717 LARSLPKIHRSASEPSLNRAGFQTEDFSLYAC---ASPKTPI 755
>ref|NP_001645.1| serine/threonine-protein kinase A-Raf [Homo sapiens].
Length = 606
Score = 503 bits (1296), Expect = e-142
Identities = 246/345 (71%), Positives = 288/345 (83%), Gaps = 1/345 (0%)
Frame = +3
Query: 57 TGWSQPKTPVPA-QRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFG 233
+G P + PA QRER S +K K++ G RDS YYWE+ SEV L RIG+GSFG
Sbjct: 265 SGRKSPHSKSPAEQRERK--SLADDKKKVKNLGYRDSGYYWEVPPSEVQLLKRIGTGSFG 322
Query: 234 TVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT 413
TV++G+WHGDVAVK+LKV PT EQ QAF+NE+ VLRKTRHVNILLFMG+MT+ AI+T
Sbjct: 323 TVFRGRWHGDVAVKVLKVSQPTAEQAQAFKNEMQVLRKTRHVNILLFMGFMTRPGFAIIT 382
Query: 414 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLT 593
QWCEGSSLY HLHV +T+F M QLID+ARQTAQGMDYLHAKNIIHRD+KSNNIFLHEGLT
Sbjct: 383 QWCEGSSLYHHLHVADTRFDMVQLIDVARQTAQGMDYLHAKNIIHRDLKSNNIFLHEGLT 442
Query: 594 VKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYEL 773
VKIGDFGLATVK+RWSG+Q +EQP+GS+LWMA EVIRMQD NP+SFQSDVY+YG+VLYEL
Sbjct: 443 VKIGDFGLATVKTRWSGAQPLEQPSGSVLWMAAEVIRMQDPNPYSFQSDVYAYGVVLYEL 502
Query: 774 MTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQ 953
MTG LPYSHI RDQIIFMVGRGY SPDLSK+ NCPKAM+RL++DC+K +EERPLFPQ
Sbjct: 503 MTGSLPYSHIGCRDQIIFMVGRGYLSPDLSKISSNCPKAMRRLLSDCLKFQREERPLFPQ 562
Query: 954 ILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLP 1088
IL++IELLQ SLPKI RSASEPSLHR +++ AC L+ + +P
Sbjct: 563 ILATIELLQRSLPKIERSASEPSLHR-TQADELPACLLSAARLVP 606
>ref|NP_775869.3| kinase suppressor of Ras 2 [Homo sapiens].
Length = 921
Score = 174 bits (442), Expect = 2e-43
Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 13/305 (4%)
Frame = +3
Query: 144 PRGQRDSSYY---WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQ 314
PR +S + W+I ++ + IG G FG VY G+WHG+VA++++ + +QL+
Sbjct: 617 PRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLK 676
Query: 315 AFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLID 491
AF+ EV R+TRH N++LFMG M+ +LAI+T C+G +LY + + + +
Sbjct: 677 AFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQ 736
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQ--- 662
IA++ +GM YLHAK I+H+D+KS N+F G V I DFGL ++ ++ ++
Sbjct: 737 IAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVV-ITDFGLFSISGVLQAGRREDKLRI 795
Query: 663 PTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII 824
G + +APE+IR +D PFS SDV++ G + YEL E P+ + II
Sbjct: 796 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK-TQPAEAII 854
Query: 825 FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINR 1004
+ +G G P+LS++ K + ++ C +EERP F +++ +E LPK NR
Sbjct: 855 WQMGTG-MKPNLSQI--GMGKEISDILLFCWAFEQEERPTFTKLMDMLE----KLPKRNR 907
Query: 1005 SASEP 1019
S P
Sbjct: 908 RLSHP 912
>ref|NP_055053.1| kinase suppressor of Ras 1 [Homo sapiens].
Length = 762
Score = 164 bits (415), Expect = 2e-40
Identities = 100/315 (31%), Positives = 167/315 (53%), Gaps = 11/315 (3%)
Frame = +3
Query: 108 PGSGTQEKNKIRPRGQRDSSYY--WEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKIL 281
P S + I + + S Y W+I +V L IG G +G V++G+WHG+VA+++L
Sbjct: 445 PSSRRPWRGPISRKASQTSVYLQEWDIPFEQVELGEPIGQGRWGRVHRGRWHGEVAIRLL 504
Query: 282 KVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMG-YMTKDNLAIVTQWCEGSSLYKHLHVQ 458
++ + L+ F+ EV R+TRH N++LFMG M +LAI+T +C+G +L+ +
Sbjct: 505 EMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGRTLHSFVRDP 564
Query: 459 ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTV--KIGDFGLATVKS 632
+T + + IA++ +GM YLHAK I+H+D+KS N+F G V G FG++ V
Sbjct: 565 KTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVR 624
Query: 633 RWSGSQQVEQPTGSILWMAPEVIRM------QDNNPFSFQSDVYSYGIVLYELMTGELPY 794
Q++ + ++APE++R +D PFS +DVY++G V YEL + P
Sbjct: 625 EGRRENQLKLSHDWLCYLAPEIVREMTPGKDEDQLPFSKAADVYAFGTVWYELQARDWPL 684
Query: 795 SHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIEL 974
+ + I+ +G G + + K + +++ C +ERP F ++ +E
Sbjct: 685 KN-QAAEASIWQIGSGEGMKRVLTSV-SLGKEVSEILSACWAFDLQERPSFSLLMDMLE- 741
Query: 975 LQHSLPKINRSASEP 1019
LPK+NR S P
Sbjct: 742 ---KLPKLNRRLSHP 753
>ref|NP_002028.1| tyrosine-protein kinase Fyn isoform a [Homo sapiens].
Length = 537
Score = 152 bits (385), Expect = 6e-37
Identities = 98/272 (36%), Positives = 152/272 (55%), Gaps = 6/272 (2%)
Frame = +3
Query: 174 WEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQAFRNEVAVLRK 347
WEI + L R+G+G FG V+ G W+G+ VA+K LK +PE +F E +++K
Sbjct: 264 WEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPE---SFLEEAQIMKK 320
Query: 348 TRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDY 524
+H ++ ++++ + IVT++ SL L E + ++ L+D+A Q A GM Y
Sbjct: 321 LKHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY 380
Query: 525 LHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPTGSILWMAPEV 698
+ N IHRD++S NI + GL KI DFGLA + + ++ Q + P I W APE
Sbjct: 381 IERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFP---IKWTAPEA 437
Query: 699 IRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGYASPDLSKLYK 875
F+ +SDV+S+GI+L EL+T G +PY +NNR +++ V RGY P +
Sbjct: 438 ALY---GRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR-EVLEQVERGYRMP----CPQ 489
Query: 876 NCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
+CP ++ L+ C KK EERP F + S +E
Sbjct: 490 DCPISLHELMIHCWKKDPEERPTFEYLQSFLE 521
>ref|NP_938033.1| proto-oncogene tyrosine-protein kinase Src [Homo sapiens].
Length = 536
Score = 150 bits (379), Expect = 3e-36
Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 6/283 (2%)
Frame = +3
Query: 141 RPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQ 314
+P+ Q + WEI + L ++G G FG V+ G W+G VA+K LK +PE
Sbjct: 252 KPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE--- 308
Query: 315 AFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLID 491
AF E V++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D
Sbjct: 309 AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD 368
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQP 665
+A Q A GM Y+ N +HRD+++ NI + E L K+ DFGLA + + ++ Q + P
Sbjct: 369 MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 428
Query: 666 TGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 842
I W APE F+ +SDV+S+GI+L EL T G +PY + NR +++ V RG
Sbjct: 429 ---IKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG 481
Query: 843 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Y P CP+++ L+ C +K EERP F + + +E
Sbjct: 482 YRMP----CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 520
>ref|NP_005408.1| proto-oncogene tyrosine-protein kinase Src [Homo sapiens].
Length = 536
Score = 150 bits (379), Expect = 3e-36
Identities = 97/283 (34%), Positives = 154/283 (54%), Gaps = 6/283 (2%)
Frame = +3
Query: 141 RPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDPTPEQLQ 314
+P+ Q + WEI + L ++G G FG V+ G W+G VA+K LK +PE
Sbjct: 252 KPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE--- 308
Query: 315 AFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLID 491
AF E V++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D
Sbjct: 309 AFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVD 368
Query: 492 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQP 665
+A Q A GM Y+ N +HRD+++ NI + E L K+ DFGLA + + ++ Q + P
Sbjct: 369 MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP 428
Query: 666 TGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRG 842
I W APE F+ +SDV+S+GI+L EL T G +PY + NR +++ V RG
Sbjct: 429 ---IKWTAPEAALY---GRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-EVLDQVERG 481
Query: 843 YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Y P CP+++ L+ C +K EERP F + + +E
Sbjct: 482 YRMP----CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 520
>ref|NP_002022.1| tyrosine-protein kinase FRK [Homo sapiens].
Length = 505
Score = 150 bits (378), Expect = 4e-36
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 14/293 (4%)
Frame = +3
Query: 135 KIRPRGQRDSSY----YWEIEASEVMLSTRIGSGSFGTVYKGKWHGD--VAVKILKVVDP 296
KI+ D SY WEI+ + + L R+GSG FG V++G W+ VAVK LK
Sbjct: 210 KIQVPAPFDLSYKTVDQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSM 269
Query: 297 TPEQLQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWCEGSSLYKHLHVQE-TKF 470
P F E +++ RH ++ T +D + I+T+ SL ++L +K
Sbjct: 270 DPND---FLREAQIMKNLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDTGSKI 326
Query: 471 QMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV-----KSR 635
+ Q +D+A Q A GM YL ++N IHRD+ + N+ + E K+ DFGLA V +
Sbjct: 327 HLTQQVDMAAQVASGMAYLESRNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDI 386
Query: 636 WSGSQQVEQPTGSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNR 812
+ +++ P + W APE IR +N FS +SDV+S+GI+LYE++T G++PYS +
Sbjct: 387 YESRHEIKLP---VKWTAPEAIR---SNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGA 440
Query: 813 DQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
Q+I M+ + Y P S NCP+ ++ +C +ERP F + +E
Sbjct: 441 -QVIQMLAQNYRLPQPS----NCPQQFYNIMLECWNAEPKERPTFETLRWKLE 488
>ref|NP_005424.1| tyrosine-protein kinase Yes [Homo sapiens].
Length = 543
Score = 149 bits (377), Expect = 5e-36
Identities = 96/282 (34%), Positives = 153/282 (54%), Gaps = 4/282 (1%)
Frame = +3
Query: 138 IRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQA 317
++P+ Q + WEI + L ++G G FG V+ G W+G V I K + P +A
Sbjct: 258 VKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAI-KTLKPGTMMPEA 316
Query: 318 FRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKF-QMFQLIDI 494
F E +++K RH ++ ++++ + IVT++ SL L + K+ ++ QL+D+
Sbjct: 317 FLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMSKGSLLDFLKEGDGKYLKLPQLVDM 376
Query: 495 ARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV--KSRWSGSQQVEQPT 668
A Q A GM Y+ N IHRD+++ NI + E L KI DFGLA + + ++ Q + P
Sbjct: 377 AAQIADGMAYIERMNYIHRDLRAANILVGENLVCKIADFGLARLIEDNEYTARQGAKFP- 435
Query: 669 GSILWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT-GELPYSHINNRDQIIFMVGRGY 845
I W APE F+ +SDV+S+GI+ EL+T G +PY + NR +++ V RGY
Sbjct: 436 --IKWTAPEAALY---GRFTIKSDVWSFGILQTELVTKGRVPYPGMVNR-EVLEQVERGY 489
Query: 846 ASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIE 971
P + CP+++ L+ C KK +ERP F I S +E
Sbjct: 490 RMP----CPQGCPESLHELMNLCWKKDPDERPTFEYIQSFLE 527
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,026,554
Number of extensions: 1914950
Number of successful extensions: 7548
Number of sequences better than 1.0e-05: 800
Number of HSP's gapped: 6322
Number of HSP's successfully gapped: 817
Length of query: 509
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 402
Effective length of database: 14,770,016
Effective search space: 5937546432
Effective search space used: 5937546432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014818
(1529 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1102 0.0
Sscrofa_ChrX 60 4e-06
>Sscrofa_Chr13
|| Length = 218635234
Score = 1102 bits (556), Expect = 0.0
Identities = 572/580 (98%)
Strand = Plus / Minus
Query: 950 tcagatcctgtcttccatcgagctgctccaacactctctaccgaaaatcaaccggagtgc 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874745 tcagatcctgtcttccatcgagctgctccaacactctctaccgaaaatcaaccggagtgc 75874686
Query: 1010 ttctgagccatccctgcaccgggcggcccacacggaggacatcaatgcctgcactctgac 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874685 ttctgagccatccctgcaccgggcggcccacacggaggacatcaatgcctgcactctgac 75874626
Query: 1070 cacatccccgagattgcccgtcttctagctgactctgcacctgcgctcaagccgctgtgg 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874625 cacatccccgagattgcccgtcttctagctgactctgcacctgcgctcaagccgctgtgg 75874566
Query: 1130 gagaagtgaagtcagcaggtaccacctttctgctccctttctgtggggacagagcttatc 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874565 gagaagtgaagtcagcaggtaccacctttctgctccctttctgtggggacagagcttatc 75874506
Query: 1190 ttcagagaagctgctgctaaggaccttctagaccactcacagggccttaacttcacgatg 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874505 ttcagagaagctgctgctaaggaccttctagaccactcacagggccttaacttcacgatg 75874446
Query: 1250 ccttttctatccaattctggccctgggagaaggaagccattcgcgatgctggtttgtcct 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874445 ccttttctatccaattctggccctgggagaaggaagccattcgcgatgctggtttgtcct 75874386
Query: 1310 gctccccctcgaggtcccatgctcctgtgctgagccttctccagatgcaccagtggctgc 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874385 gctccccctcgaggtcccatgctcctgtgctgagccttctccagatgcaccagtggctgc 75874326
Query: 1370 tgatggcattatgggatctggggccccagctattgattggctaaatgagtaatttgagag 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874325 tgatggcattatgggatctggggccccagctattgattggctaaatgagtaatttgagag 75874266
Query: 1430 caagnnnnnnnngcactcagaggggaaaaaagtgactggcaggcaaaccagccatgacat 1489
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874265 caagaaaaaaaagcactcagaggggaaaaaagtgactggcaggcaaaccagccatgacat 75874206
Query: 1490 gggggacatgttgatttcgggaatcagctcctatgagcaa 1529
||||||||||||||||||||||||||||||||||||||||
Sbjct: 75874205 gggggacatgttgatttcgggaatcagctcctatgagcaa 75874166
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 343 gcaaaactcggcatgtgaacatcctgctgttcatggggtacatgaccaaggacaacctgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75848726 gcaaaactcggcatgtgaacatcctgctgttcatggggtacatgaccaaggacaacctgg 75848667
Query: 403 cgattgtgacccagtggtgtgagggcagcagcctctacaaacacctgcatgtccaggaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75848666 cgattgtgacccagtggtgtgagggcagcagcctctacaaacacctgcatgtccaggaga 75848607
Query: 463 ccaagttccagatgttccagttgattgacattgcccggcagacggctcagggaatgga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75848606 ccaagttccagatgttccagttgattgacattgcccggcagacggctcagggaatgga 75848549
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 817 agatcatcttcatggtgggccgaggctatgcctccccagatcttagtaagctctacaaga 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875220 agatcatcttcatggtgggccgaggctatgcctccccagatcttagtaagctctacaaga 75875161
Query: 877 actgcccaaaagcaatgaagaggcttgtggccgactgtgtgaagaaagttaaggaagaaa 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875160 actgcccaaaagcaatgaagaggcttgtggccgactgtgtgaagaaagttaaggaagaaa 75875101
Query: 937 ggcctctttttcctcag 953
|||||||||||||||||
Sbjct: 75875100 ggcctctttttcctcag 75875084
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 686 ggccccagaggtgatccggatgcaggataacaacccattcagcttccagtccgacgtcta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875470 ggccccagaggtgatccggatgcaggataacaacccattcagcttccagtccgacgtcta 75875411
Query: 746 ctcctacggcattgtgctgtacgagctcatgacgggggagctcccttactcccacatcaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875410 ctcctacggcattgtgctgtacgagctcatgacgggggagctcccttactcccacatcaa 75875351
Query: 806 caaccgtgatcag 818
|||||||||||||
Sbjct: 75875350 caaccgtgatcag 75875338
Score = 258 bits (130), Expect = 8e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 11 agcctcaccttcagccttgtccagcagccccaacaatctgagcccaacgggctggtcaca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75857933 agcctcaccttcagccttgtccagcagccccaacaatctgagcccaacgggctggtcaca 75857874
Query: 71 accgaaaacccctgtgccagcacagagagagcgggcgccaggatccgggacccaggagaa 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75857873 accgaaaacccctgtgccagcacagagagagcgggcgccaggatccgggacccaggagaa 75857814
Query: 131 aaacaaaatt 140
||||||||||
Sbjct: 75857813 aaacaaaatt 75857804
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 568 atatatttctccatgaaggcctaacggtgaaaattggagattttggtttggcaacagtca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875973 atatatttctccatgaaggcctaacggtgaaaattggagattttggtttggcaacagtca 75875914
Query: 628 agtcgcgctggagtggttctcagcaggttgaacaacctactggctccatcctgtggatgg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75875913 agtcgcgctggagtggttctcagcaggttgaacaacctactggctccatcctgtggatgg 75875854
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 141 aggcctcgtggacagagagattcaagctattactgggaaatagaagccagtgaagtgatg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75857321 aggcctcgtggacagagagattcaagctattactgggaaatagaagccagtgaagtgatg 75857262
Query: 201 ctttccactcggattgggtcaggctcctttggaactgtttataagggcaagtggcatgg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75857261 ctttccactcggattgggtcaggctcctttggaactgtttataagggcaagtggcatgg 75857203
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 258 ggagatgttgcagtaaagatcctaaaggttgttgaccccacaccagagcagttgcaggcc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75849550 ggagatgttgcagtaaagatcctaaaggttgttgaccccacaccagagcagttgcaggcc 75849491
Query: 318 tttaggaatgaagtggctgtccttcg 343
||||||||||||||||||||||||||
Sbjct: 75849490 tttaggaatgaagtggctgtccttcg 75849465
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 521 ctacttgcatgcaaagaacatcatccacagagacatgaaatccaaca 567
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75877703 ctacttgcatgcaaagaacatcatccacagagacatgaaatccaaca 75877657
>Sscrofa_ChrX
|| Length = 144288218
Score = 60.0 bits (30), Expect = 4e-06
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 693 gaggtgatccggatgcaggataacaacccattcagcttccagtccgacgtctactcctac 752
|||||||||||||||||||| ||||| | |||||||||||| |||||||| ||||
Sbjct: 47390692 gaggtgatccggatgcaggacccgaacccctacagcttccagtctgacgtctatgcctat 47390633
Query: 753 ggcattgtgctgtacgagctcatgac 778
|| | ||||| ||||||||||||||
Sbjct: 47390632 ggggtggtgctctacgagctcatgac 47390607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,170,324
Number of extensions: 265
Number of successful extensions: 265
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 11
Length of query: 1529
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1508
Effective length of database: 2,808,413,156
Effective search space: 4235087039248
Effective search space used: 4235087039248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)