BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192990.1| zinc finger and BTB domain-containing protei... 308 4e-84
Alignment gi|XP_002685767.1| PREDICTED: zinc finger protein 45-like [Bos ... 308 4e-84
Alignment gi|NP_001071484.1| zinc finger protein 238 [Bos taurus]. 88 1e-17
Alignment gi|NP_001179199.1| hypermethylated in cancer 2 protein [Bos tau... 85 8e-17
Alignment gi|XP_002694725.1| PREDICTED: hypermethylated in cancer 2 [Bos ... 85 8e-17
Alignment gi|NP_001071405.1| zinc finger and BTB domain-containing protei... 82 5e-16
Alignment gi|XP_002707785.1| PREDICTED: zinc finger and BTB domain contai... 77 2e-14
Alignment gi|XP_590523.4| PREDICTED: zinc finger and BTB domain containin... 77 2e-14
Alignment gi|NP_001069732.1| zinc finger and BTB domain-containing protei... 75 9e-14
Alignment gi|NP_001192697.1| zinc finger and BTB domain-containing protei... 68 1e-11
>ref|NP_001192990.1| zinc finger and BTB domain-containing protein 40 [Bos taurus].
Length = 1232
Score = 308 bits (790), Expect = 4e-84
Identities = 163/215 (75%), Positives = 172/215 (80%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL SLV+CS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLASLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV PE EILSSEGAGE H+S E S+P GPVK E + +H
Sbjct: 121 VQGQV-VRDVSTPSEPSRKESEKPETEILSSEGAGEHHTSPEVSTPPGGPVKVEVKHGVH 179
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPPVQLTSVLP 963
T VQEM VDP AAQEIQG ++P ++ P
Sbjct: 180 TAVQEMRVDPPAAQEIQGHTDTPGSHSAEVCPSAP 214
>ref|XP_002685767.1| PREDICTED: zinc finger protein 45-like [Bos taurus].
Length = 1232
Score = 308 bits (790), Expect = 4e-84
Identities = 163/215 (75%), Positives = 172/215 (80%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL SLV+CS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLASLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV PE EILSSEGAGE H+S E S+P GPVK E + +H
Sbjct: 121 VQGQV-VRDVSTPSEPSRKESEKPETEILSSEGAGEHHTSPEVSTPPGGPVKVEVKHGVH 179
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPPVQLTSVLP 963
T VQEM VDP AAQEIQG ++P ++ P
Sbjct: 180 TAVQEMRVDPPAAQEIQGHTDTPGSHSAEVCPSAP 214
>ref|NP_001071484.1| zinc finger protein 238 [Bos taurus].
Length = 531
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS----LLFKTLLD 480
D+ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S L +K LD
Sbjct: 8 DSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLD 67
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 68 KRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 126
>ref|NP_001179199.1| hypermethylated in cancer 2 protein [Bos taurus].
Length = 612
Score = 85.1 bits (209), Expect = 8e-17
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Frame = +1
Query: 277 WKKRGRELLDRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS 456
W RG D MELP++S+QLL QL + CD + + FRAHK VLAA+S
Sbjct: 13 WAGRG----DMGPDMELPSHSKQLLLQLNQQRTQGFLCDVIVMVENAVFRAHKNVLAASS 68
Query: 457 LLFKTLLDNTDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQM 624
+ FK+L+ + + IS+D +VS F +L+ +YTG+L P + NFS +++ A LQ+
Sbjct: 69 VYFKSLVLHDNLISLDTDMVSSAVFQQILDFIYTGRLLPGEPPAEPNFSTLLTAASYLQL 128
Query: 625 FDVAVSCKNLL 657
++A C+ L
Sbjct: 129 PELAALCRRKL 139
>ref|XP_002694725.1| PREDICTED: hypermethylated in cancer 2 [Bos taurus].
Length = 612
Score = 85.1 bits (209), Expect = 8e-17
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
Frame = +1
Query: 277 WKKRGRELLDRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS 456
W RG D MELP++S+QLL QL + CD + + FRAHK VLAA+S
Sbjct: 13 WAGRG----DMGPDMELPSHSKQLLLQLNQQRTQGFLCDVIVMVENAVFRAHKNVLAASS 68
Query: 457 LLFKTLLDNTDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQM 624
+ FK+L+ + + IS+D +VS F +L+ +YTG+L P + NFS +++ A LQ+
Sbjct: 69 VYFKSLVLHDNLISLDTDMVSSAVFQQILDFIYTGRLLPGEPPAEPNFSTLLTAASYLQL 128
Query: 625 FDVAVSCKNLL 657
++A C+ L
Sbjct: 129 PELAALCRRKL 139
>ref|NP_001071405.1| zinc finger and BTB domain-containing protein 5 [Bos taurus].
Length = 676
Score = 82.4 bits (202), Expect = 5e-16
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L D
Sbjct: 1 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ 60
Query: 484 T-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT 660
T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK+ LT
Sbjct: 61 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT 120
Query: 661 S 663
+
Sbjct: 121 T 121
>ref|XP_002707785.1<
Animal-Genome cDNA 20110601C-014837
Animal-Genome cDNA 20110601C-014837
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544510.2| PREDICTED: similar to zinc finger and BTB domai... 305 3e-83
Alignment gi|XP_547497.2| PREDICTED: similar to zinc finger protein 238 i... 88 1e-17
Alignment gi|XP_538734.2| PREDICTED: similar to Zinc finger and BTB domai... 83 4e-16
Alignment gi|XP_543570.2| PREDICTED: similar to Hypermethylated in cancer... 82 8e-16
Alignment gi|XP_848760.1| PREDICTED: similar to Zinc finger and BTB domai... 77 2e-14
Alignment gi|XP_544430.2| PREDICTED: similar to zinc finger and BTB domai... 77 3e-14
Alignment gi|XP_855026.1| PREDICTED: similar to zinc finger and BTB domai... 76 5e-14
Alignment gi|XP_548318.2| PREDICTED: similar to Hypermethylated in cancer... 75 9e-14
Alignment gi|XP_855871.1| PREDICTED: similar to BTB (POZ) domain containi... 68 1e-11
Alignment gi|XP_855835.1| PREDICTED: similar to BTB (POZ) domain containi... 68 1e-11
>ref|XP_544510.2| PREDICTED: similar to zinc finger and BTB domain containing 40
[Canis familiaris].
Length = 1243
Score = 305 bits (782), Expect = 3e-83
Identities = 165/220 (75%), Positives = 176/220 (80%), Gaps = 3/220 (1%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIG IYFRAHKLVLAAASLLF+TLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGAIYFRAHKLVLAAASLLFRTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV+CS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEE-AI 855
VQGQV PEVE+L+SEGAGE S EA P PVK ETEE I
Sbjct: 121 VQGQVVRDVSIPPSEAYRKEREKPEVEVLASEGAGEPRPSLEACVPPGAPVKAETEEDVI 180
Query: 856 HTVVQEMSVDPSAAQEIQGKGESPAE--PPVQLTSVLPSL 969
TV EMSV PS A+EIQG ++P E PPV++ S P++
Sbjct: 181 PTVAGEMSVGPSTAREIQGNTDAPVETPPPVEVCSPSPAV 220
>ref|XP_547497.2| PREDICTED: similar to zinc finger protein 238 isoform 1 [Canis
familiaris].
Length = 531
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS----LLFKTLLD 480
D+ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S L +K LD
Sbjct: 8 DSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLD 67
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 68 KRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 126
>ref|XP_538734.2| PREDICTED: similar to Zinc finger and BTB domain containing protein
5 [Canis familiaris].
Length = 893
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Frame = +1
Query: 307 RADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL--- 477
R M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L
Sbjct: 213 RLRIMDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVA 272
Query: 478 --DNT-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCK 648
D T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK
Sbjct: 273 EGDQTMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACK 332
Query: 649 NLLTS 663
+ LT+
Sbjct: 333 HYLTT 337
>ref|XP_543570.2| PREDICTED: similar to Hypermethylated in cancer 2 protein (Hic-2)
(Hic-3) (HIC1-related gene on chromosome 22) (Zinc
finger and BTB domain containing protein 30) [Canis
familiaris].
Length = 635
Score = 82.0 bits (201), Expect = 8e-16
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%)
Frame = +1
Query: 277 WKKRGRELLDRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS 456
W RG D MELP++S+QLL QL + CD I + FRAHK VLAA+S
Sbjct: 32 WAGRG----DMGPDMELPSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAHKNVLAASS 87
Query: 457 LLFKTLLDNTDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQM 624
+ FK+L+ + + I++D +VS F +L+ +YTGKL + NFS +++ A LQ+
Sbjct: 88 IYFKSLVLHDNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQPAEPNFSTLLTAASYLQL 147
Query: 625 FDVAVSCKNLL 657
++A C+ L
Sbjct: 148 PELAALCRRKL 158
>ref|XP_848760.1| PREDICTED: similar to Zinc finger and BTB domain containing protein
17 (Zinc finger protein 151) (Myc-interacting zinc
finger protein) (Miz-1 protein) [Canis familiaris].
Length = 470
Score = 77.4 bits (189), Expect = 2e-14
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 1/206 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+Q+L+QL + CDCT + + F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQQVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSC 675
+D S + +LE MYT KL + N ++++A LQM D+ +C + L SL
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSSENVDDVLAVASFLQMQDIITAC-HALKSL--- 114
Query: 676 SVQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAI 855
+E A + AS+ + G + + E+A
Sbjct: 115 -------------------------------AEPAASPGENTVASAVEGGDKRAKEEKAA 143
Query: 856 HTVVQEMSVDPSAAQEIQGKGESPAE 933
T++ E+ DP+ + G G P E
Sbjct: 144 ATMLSEL--DPAGSNPPPGPGREPKE 167
>ref|XP_544430.2| PREDICTED: similar to zinc finger and BTB domain containing 8
[Canis familiaris].
Length = 517
Score = 76.6 bits (187), Expect = 3e-14
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Frame = +1
Query: 310 ADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL---- 477
A ME+ ++ LLQQL ++ FCDC+I + F+AH+ VL A+S FK LL
Sbjct: 75 ASGMEISSHQSHLLQQLNEQRRQDVFCDCSILVEGKVFKAHRNVLFASSGYFKMLLSQNS 134
Query: 478 -DNTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNL 654
+ + + SP+ F ++L+ +Y+GKL + N +++S A LQM DV CK
Sbjct: 135 KETSQPTTATFQAFSPDTFTVILDFVYSGKLSLTGQNVIEVMSAASFLQMTDVISVCKTF 194
Query: 655 LTSLVSCS 678
+ S + S
Sbjct: 195 IKSSLDIS 202
>ref|XP_855026.1| PREDICTED: similar to zinc finger and BTB domain containing 3
[Canis familiaris].
Length = 566
Score = 75.9 bits (185), Expect = 5e-14
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Frame = +1
Query: 316 AMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-----LD 480
AME P++S+QLLQ L + CDCT+ +G+ F AH+ VLA+ S F+ LD
Sbjct: 53 AMEFPDHSQQLLQSLREQRSQGFLCDCTVMVGSTQFLAHRAVLASCSPFFQLFYKERELD 112
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPV-GKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + I +V+ F LLL+ MY G+L + G +++ A L M D+ CK L
Sbjct: 113 KRDLVCIHNEIVTAPAFGLLLDFMYAGQLVLRGDTPVEDVLAAASYLHMNDIVKVCKRRL 172
>ref|XP_548318.2| PREDICTED: similar to Hypermethylated in cancer 1 protein (Hic-1)
(Zinc finger and BTB domain containing protein 29)
[Canis familiaris].
Length = 732
Score = 75.1 bits (183), Expect = 9e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 22 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 81
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 82 LNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 141
Query: 634 AVSCKNLL 657
CK L
Sbjct: 142 VALCKKRL 149
>ref|XP_855871.1| PREDICTED: similar to BTB (POZ) domain containing 15 isoform 4
[Canis familiaris].
Length = 453
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Frame = +1
Query: 331 NYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL----DNTDTIS 498
++S+++L +L L + FCD TI + FRAHK+VLAA S F+T L ++ +
Sbjct: 12 SHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNV 71
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV 669
+D V+ F LLE YT L + N +++ A +QMF VA +C + S +
Sbjct: 72 LDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI 128
>ref|XP_855835.1| PREDICTED: similar to BTB (POZ) domain containing 15 isoform 3
[Canis familiaris].
Length = 502
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Frame = +1
Query: 331 NYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL----DNTDTIS 498
++S+++L +L L + FCD TI + FRAHK+VLAA S F+T L ++ +
Sbjct: 12 SHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNV 71
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV 669
+D V+ F LLE YT L + N +++ A +QMF VA +C + S +
Sbjct: 72 LDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,575,451
Number of extensions: 1085269
Number of successful extensions: 5796
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 5702
Number of HSP's successfully gapped: 68
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
/A>| PREDICTED: zinc finger and BTB domain containing 17-like [Bos
taurus].
Length = 793
Score = 77.0 bits (188), Expect = 2e-14
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+ +L+QL + CDCT + + F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSC 675
+D S + +LE MYT KL + N ++++A LQM D+ +C + L SL
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSSENVDDVLAVASFLQMQDIITAC-HALKSL--- 114
Query: 676 SVQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAI 855
+E A + EAS+ + G + + E+A
Sbjct: 115 -------------------------------AEPAASPGENMEASAAEVGDKRAKEEKAA 143
Query: 856 HTVVQEMSVDPSAAQEIQGKGESPAE 933
T + E+ DP+ + G G P E
Sbjct: 144 ATPLSEL--DPARSSPPTGPGREPKE 167
>ref|XP_590523.4| PREDICTED: zinc finger and BTB domain containing 17 [Bos taurus].
Length = 727
Score = 77.0 bits (188), Expect = 2e-14
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+ +L+QL + CDCT + + F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSC 675
+D S + +LE MYT KL + N ++++A LQM D+ +C + L SL
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSSENVDDVLAVASFLQMQDIITAC-HALKSL--- 114
Query: 676 SVQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAI 855
+E A + EAS+ + G + + E+A
Sbjct: 115 -------------------------------AEPAASPGENMEASAAEVGDKRAKEEKAA 143
Query: 856 HTVVQEMSVDPSAAQEIQGKGESPAE 933
T + E+ DP+ + G G P E
Sbjct: 144 ATPLSEL--DPARSSPPTGPGREPKE 167
>ref|NP_001069732.1| zinc finger and BTB domain-containing protein 8A [Bos taurus].
Length = 441
Score = 75.1 bits (183), Expect = 9e-14
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
ME+ ++ LLQQL ++ FCDC+I + F+AH+ VL A+S FK LL +
Sbjct: 1 MEISSHQSHLLQQLNEQRRQDVFCDCSILVEGKVFKAHRNVLFASSGYFKMLLSQNSKET 60
Query: 484 TDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTS 663
+ + SP+ F ++L+ +Y+GKL + N +++S A LQM DV CK + S
Sbjct: 61 SQPTTATFQAFSPDTFTVILDFVYSGKLSLTGQNVIEVMSAASFLQMTDVISVCKTFIKS 120
Query: 664 LVSCS 678
+ S
Sbjct: 121 SLDIS 125
>ref|NP_001192697.1| zinc finger and BTB domain-containing protein 2 [Bos taurus].
Length = 514
Score = 68.2 bits (165), Expect = 1e-11
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL--DNTDT 492
M+L N+ LLQQL + CDCT++IG +YF+AHK VLA+ S FK L ++
Sbjct: 1 MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSEC 60
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL 567
+ + + + P+ F+ LL +MYTGK+
Sbjct: 61 VRLKPTDIQPDIFSYLLHLMYTGKM 85
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,405,956
Number of extensions: 1124346
Number of successful extensions: 5628
Number of sequences better than 1.0e-05: 80
Number of HSP's gapped: 5459
Number of HSP's successfully gapped: 80
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361280.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ... 357 4e-99
Alignment gi|XP_003357696.1| PREDICTED: zinc finger protein 238-like [Sus... 88 8e-18
Alignment gi|XP_001929597.1| PREDICTED: hypermethylated in cancer 2 prote... 82 4e-16
Alignment gi|XP_003353866.1| PREDICTED: zinc finger and BTB domain-contai... 75 4e-14
Alignment gi|XP_003360604.1| PREDICTED: zinc finger and BTB domain-contai... 75 5e-14
Alignment gi|XP_003131872.1| PREDICTED: hypermethylated in cancer 1 prote... 75 5e-14
Alignment gi|XP_003356337.1| PREDICTED: zinc finger and BTB domain-contai... 75 7e-14
Alignment gi|XP_003130128.1| PREDICTED: zinc finger and BTB domain-contai... 68 7e-12
Alignment gi|XP_003130127.1| PREDICTED: zinc finger and BTB domain-contai... 68 7e-12
Alignment gi|XP_001929236.1| PREDICTED: zinc finger and BTB domain-contai... 68 7e-12
>ref|XP_003361280.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger and BTB
domain-containing protein 40-like [Sus scrofa].
Length = 1225
Score = 357 bits (917), Expect = 4e-99
Identities = 186/207 (89%), Positives = 186/207 (89%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV NPEVEILSSEGAGELHSSREASSPQ GPVKGETEEAIH
Sbjct: 121 VQGQVVRDVSSPSSESSRKESENPEVEILSSEGAGELHSSREASSPQGGPVKGETEEAIH 180
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPP 939
TVVQEMSVDPS AQEIQG ESPAEPP
Sbjct: 181 TVVQEMSVDPSTAQEIQGNAESPAEPP 207
>ref|XP_003357696.1| PREDICTED: zinc finger protein 238-like [Sus scrofa].
Length = 531
Score = 87.8 bits (216), Expect = 8e-18
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS----LLFKTLLD 480
D+ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S L +K LD
Sbjct: 8 DSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLD 67
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 68 KRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 126
>ref|XP_001929597.1| PREDICTED: hypermethylated in cancer 2 protein [Sus scrofa].
Length = 605
Score = 82.0 bits (201), Expect = 4e-16
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%)
Frame = +1
Query: 277 WKKRGRELLDRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS 456
W RG D MELP++S+QLL QL + CD I + FRAHK VLAA+S
Sbjct: 13 WAGRG----DMGPDMELPSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAHKNVLAASS 68
Query: 457 LLFKTLLDNTDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQM 624
+ FK+L+ + + I++D +VS F +L+ +YTGKL + NFS +++ A LQ+
Sbjct: 69 IYFKSLVLHDNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQPAEPNFSTLLTAASYLQL 128
Query: 625 FDVAVSCKNLL 657
++A C+ L
Sbjct: 129 PELAALCRRKL 139
>ref|XP_003353866.1| PREDICTED: zinc finger and BTB domain-containing protein 3 [Sus
scrofa].
Length = 539
Score = 75.5 bits (184), Expect = 4e-14
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Frame = +1
Query: 316 AMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-----LD 480
AME P +S+QLLQ L + CDCT+ +G+ F AH+ VLA+ S F+ LD
Sbjct: 27 AMEFPEHSQQLLQSLREQRSQGFLCDCTVMVGSTQFLAHRAVLASCSPFFQLFYKERELD 86
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPV-GKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + I +V+ F LLL+ MY G+L + G +++ A L M D+ CK L
Sbjct: 87 KRDLVCIHNEIVTAPAFGLLLDFMYAGQLVLRGDTPVEDVLAAASYLHMNDIVKVCKRRL 146
>ref|XP_003360604.1| PREDICTED: zinc finger and BTB domain-containing protein 17 [Sus
scrofa].
Length = 744
Score = 75.1 bits (183), Expect = 5e-14
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 1/208 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+ +L+QL + CDCT + + F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSC 675
+D S + +LE MYT KL + N ++++A LQM ++ +C L +
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSSENVDDVLAVASFLQMQEIITACHALKSLAERA 118
Query: 676 SVQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAI 855
+ G+ + E ++ EL +R SSP GP + E +E
Sbjct: 119 TSPGE------SVEASAVEVGDKRAKEEKAAASTLSELDPAR--SSPPTGPGR-EPKEER 169
Query: 856 HTVVQEMSVDPSAAQEIQGKGESPAEPP 939
+ M+ S A++ + K ++P EPP
Sbjct: 170 GGQAESMA---SGAEQTE-KADAPREPP 193
>ref|XP_003131872.1| PREDICTED: hypermethylated in cancer 1 protein isoform 1 [Sus
scrofa].
Length = 733
Score = 75.1 bits (183), Expect = 5e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 22 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 81
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 82 LNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 141
Query: 634 AVSCKNLL 657
CK L
Sbjct: 142 VALCKKRL 149
>ref|XP_003356337.1| PREDICTED: zinc finger and BTB domain-containing protein 8A-like
[Sus scrofa].
Length = 441
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
ME+ ++ LLQQL ++ FCDC I + F+AH+ VL A+S FK LL T +
Sbjct: 1 MEISSHQSHLLQQLNEQRRQDVFCDCNILVEGKVFKAHRNVLFASSGYFKMLLSQTSKET 60
Query: 499 IDASVV-----SPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTS 663
+ SP+ F ++L+ +Y+G+L + N +++S A LQM DV CK + S
Sbjct: 61 SQPTTATFQAFSPDTFTVILDFVYSGRLSLTGQNVIEVMSAASFLQMTDVISVCKTFIKS 120
Query: 664 LVSCS 678
+ S
Sbjct: 121 SLDIS 125
>ref|XP_003130128.1| PREDICTED: zinc finger and BTB domain-containing protein 44 isoform
2 [Sus scrofa].
Length = 616
Score = 68.2 bits (165), Expect = 7e-12
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Frame = +1
Query: 331 NYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL----DNTDTIS 498
++S+++L +L L + FCD TI + FRAHK+VLAA S F+T L ++ +
Sbjct: 12 SHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNV 71
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV 669
+D V+ F LLE YT L + N +++ A +QMF VA +C + S +
Sbjct: 72 LDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI 128
>ref|XP_003130127.1| PREDICTED: zinc finger and BTB domain-containing protein 44 isoform
1 [Sus scrofa].
Length = 453
Score = 68.2 bits (165), Expect = 7e-12
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Frame = +1
Query: 331 NYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL----DNTDTIS 498
++S+++L +L L + FCD TI + FRAHK+VLAA S F+T L ++ +
Sbjct: 12 SHSQEMLGKLNMLRNDGHFCDITIRVQDKIFRAHKVVLAACSDFFRTKLVGQAEDENKNV 71
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV 669
+D V+ F LLE YT L + N +++ A +QMF VA +C + S +
Sbjct: 72 LDLHHVTVTGFIPLLEYAYTATLSINTENIIDVLAAASYMQMFSVASTCSEFMKSSI 128
>ref|XP_001929236.1| PREDICTED: zinc finger and BTB domain-containing protein 2 [Sus
scrofa].
Length = 514
Score = 68.2 bits (165), Expect = 7e-12
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL--DNTDT 492
M+L N+ LLQQL + CDCT++IG +YF+AHK VLA+ S FK L ++
Sbjct: 1 MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSEC 60
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL 567
+ + + + P+ F+ LL +MYTGK+
Sbjct: 61 VRLKPTDIQPDIFSYLLHLMYTGKM 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,093,842
Number of extensions: 822519
Number of successful extensions: 3504
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 3429
Number of HSP's successfully gapped: 50
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_937891.1| zinc finger and BTB domain-containing protein 4... 268 5e-72
Alignment gi|NP_001012330.1| zinc finger protein 238 isoform 1 [Mus muscu... 88 1e-17
Alignment gi|NP_038943.3| zinc finger protein 238 isoform 2 [Mus musculus]. 85 7e-17
Alignment gi|NP_001156756.1| zinc finger and BTB domain-containing protei... 82 5e-16
Alignment gi|NP_001156755.1| zinc finger and BTB domain-containing protei... 82 5e-16
Alignment gi|NP_775575.2| zinc finger and BTB domain-containing protein 5... 82 5e-16
Alignment gi|NP_849253.2| hypermethylated in cancer 2 protein [Mus muscul... 80 2e-15
Alignment gi|NP_033567.2| zinc finger and BTB domain-containing protein 1... 75 6e-14
Alignment gi|NP_001091673.1| hypermethylated in cancer 1 protein isoform ... 75 8e-14
Alignment gi|NP_034560.2| hypermethylated in cancer 1 protein isoform 1 [... 75 8e-14
>ref|NP_937891.1| zinc finger and BTB domain-containing protein 40 [Mus musculus].
Length = 1258
Score = 268 bits (685), Expect = 5e-72
Identities = 141/207 (68%), Positives = 157/207 (75%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELP+YS+QLL QLY LCKEQ+FCDCTIS+G IYFRAHK VLAAASLLFKTLLD+TD IS
Sbjct: 1 MELPSYSQQLLLQLYALCKEQRFCDCTISVGNIYFRAHKPVLAAASLLFKTLLDSTDAIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEM YTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT+LV+CS
Sbjct: 61 IDASVVSPEEFALLLEMTYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTNLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV P+VE LSSEGA E SS E S+ GP K +T++ I+
Sbjct: 121 VQGQVVRDVSVLSSEAGNKESEKPQVEALSSEGAEEPSSSPEVSAVPAGPEKAKTQDVIN 180
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPP 939
QE++ DP AQE+Q E P
Sbjct: 181 IATQEINADPPVAQEVQVAAEITGATP 207
>ref|NP_001012330.1| zinc finger protein 238 isoform 1 [Mus musculus].
Length = 531
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS----LLFKTLLD 480
D+ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S L +K LD
Sbjct: 8 DSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLD 67
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 68 KRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 126
>ref|NP_038943.3| zinc finger protein 238 isoform 2 [Mus musculus].
Length = 522
Score = 85.1 bits (209), Expect = 7e-17
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLF----KTLLDNT 486
ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S+ F K LD
Sbjct: 1 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLDKR 60
Query: 487 DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 61 DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 117
>ref|NP_001156756.1| zinc finger and BTB domain-containing protein 5 [Mus musculus].
Length = 670
Score = 82.4 bits (202), Expect = 5e-16
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L D
Sbjct: 1 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ 60
Query: 484 T-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT 660
T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK+ LT
Sbjct: 61 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT 120
Query: 661 S 663
+
Sbjct: 121 T 121
>ref|NP_001156755.1| zinc finger and BTB domain-containing protein 5 [Mus musculus].
Length = 670
Score = 82.4 bits (202), Expect = 5e-16
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L D
Sbjct: 1 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ 60
Query: 484 T-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT 660
T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK+ LT
Sbjct: 61 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT 120
Query: 661 S 663
+
Sbjct: 121 T 121
>ref|NP_775575.2| zinc finger and BTB domain-containing protein 5 [Mus musculus].
Length = 670
Score = 82.4 bits (202), Expect = 5e-16
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L D
Sbjct: 1 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ 60
Query: 484 T-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT 660
T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK+ LT
Sbjct: 61 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT 120
Query: 661 S 663
+
Sbjct: 121 T 121
>ref|NP_849253.2| hypermethylated in cancer 2 protein [Mus musculus].
Length = 619
Score = 80.5 bits (197), Expect = 2e-15
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Frame = +1
Query: 304 DRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDN 483
D MELP++S+QLL QL + CD I + FRAHK VLAA+S+ FK+L+ +
Sbjct: 18 DMGPDMELPSHSKQLLLQLNQQRAKGFLCDVIIMVENSIFRAHKNVLAASSIYFKSLVLH 77
Query: 484 TDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQMFDVAVSCKN 651
+ I++D +VS F +L+ +YTGKL + NFS +++ A LQ+ ++A C+
Sbjct: 78 DNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQPSEPNFSTLLTAASYLQLPELAALCRR 137
Query: 652 LL 657
L
Sbjct: 138 KL 139
>ref|NP_033567.2| zinc finger and BTB domain-containing protein 17 [Mus musculus].
Length = 794
Score = 75.5 bits (184), Expect = 6e-14
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+++L+QL + CDCT + + F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQRVLEQLNQQRQLGLLCDCTFVVDGVDFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSC 675
+D S + +LE MYT KL + N ++++A LQM D+ +C L +
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVASFLQMQDIVTACHTLKSLAEPS 118
Query: 676 SVQGQ 690
S G+
Sbjct: 119 STTGE 123
>ref|NP_001091673.1| hypermethylated in cancer 1 protein isoform 2 [Mus musculus].
Length = 733
Score = 75.1 bits (183), Expect = 8e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 22 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 81
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 82 LNLDHDMVSPAVFRLVLDFIYTGRLTDSVEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 141
Query: 634 AVSCKNLL 657
CK L
Sbjct: 142 VALCKKRL 149
>ref|NP_034560.2| hypermethylated in cancer 1 protein isoform 1 [Mus musculus].
Length = 893
Score = 75.1 bits (183), Expect = 8e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 182 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 241
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 242 LNLDHDMVSPAVFRLVLDFIYTGRLTDSVEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 301
Query: 634 AVSCKNLL 657
CK L
Sbjct: 302 VALCKKRL 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,223,771
Number of extensions: 889104
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 76
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077090.1| zinc finger and BTB domain-containing protei... 315 3e-86
Alignment gi|NP_055685.3| zinc finger and BTB domain-containing protein 4... 315 3e-86
Alignment gi|NP_991331.1| zinc finger protein 238 isoform 1 [Homo sapiens]. 88 1e-17
Alignment gi|NP_006343.2| zinc finger protein 238 isoform 2 [Homo sapiens]. 85 9e-17
Alignment gi|NP_055687.1| zinc finger and BTB domain-containing protein 5... 82 6e-16
Alignment gi|NP_055909.2| hypermethylated in cancer 2 protein [Homo sapie... 82 7e-16
Alignment gi|NP_001035531.1| zinc finger and BTB domain-containing protei... 75 9e-14
Alignment gi|NP_001091672.1| hypermethylated in cancer 1 protein isoform ... 75 9e-14
Alignment gi|NP_006488.2| hypermethylated in cancer 1 protein isoform 1 [... 75 9e-14
Alignment gi|NP_003434.2| zinc finger and BTB domain-containing protein 1... 74 2e-13
>ref|NP_001077090.1| zinc finger and BTB domain-containing protein 40 [Homo sapiens].
Length = 1239
Score = 315 bits (808), Expect = 3e-86
Identities = 167/216 (77%), Positives = 175/216 (81%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV+CS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV P+VEILSSEGAGE HSS E ++ GPVK ETEEA H
Sbjct: 121 VQGQVVRDVSAPSSETFRKEPEKPQVEILSSEGAGEPHSSPELAATPGGPVKAETEEAAH 180
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPPVQLTSVLPS 966
+V QEMSV+ AQE Q E+PAE P + PS
Sbjct: 181 SVSQEMSVNSPTAQESQRNAETPAETPTTAEACSPS 216
>ref|NP_055685.3| zinc finger and BTB domain-containing protein 40 [Homo sapiens].
Length = 1239
Score = 315 bits (808), Expect = 3e-86
Identities = 167/216 (77%), Positives = 175/216 (81%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 498
MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS
Sbjct: 1 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDTIS 60
Query: 499 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVSCS 678
IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLV+CS
Sbjct: 61 IDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTSLVNCS 120
Query: 679 VQGQVXXXXXXXXXXXXXXXXXNPEVEILSSEGAGELHSSREASSPQEGPVKGETEEAIH 858
VQGQV P+VEILSSEGAGE HSS E ++ GPVK ETEEA H
Sbjct: 121 VQGQVVRDVSAPSSETFRKEPEKPQVEILSSEGAGEPHSSPELAATPGGPVKAETEEAAH 180
Query: 859 TVVQEMSVDPSAAQEIQGKGESPAEPPVQLTSVLPS 966
+V QEMSV+ AQE Q E+PAE P + PS
Sbjct: 181 SVSQEMSVNSPTAQESQRNAETPAETPTTAEACSPS 216
>ref|NP_991331.1| zinc finger protein 238 isoform 1 [Homo sapiens].
Length = 531
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS----LLFKTLLD 480
D+ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S L +K LD
Sbjct: 8 DSMEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLD 67
Query: 481 NTDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 68 KRDIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 126
>ref|NP_006343.2| zinc finger protein 238 isoform 2 [Homo sapiens].
Length = 522
Score = 85.1 bits (209), Expect = 9e-17
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLF----KTLLDNT 486
ME P++SR LLQ L + CDCT+ +G FRAH+ VLA+ S+ F K LD
Sbjct: 1 MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLDKR 60
Query: 487 DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLL 657
D + +++ +V+ FALLLE MY GKL +++ A L M+D+ CK L
Sbjct: 61 DIVHLNSDIVTAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKL 117
>ref|NP_055687.1| zinc finger and BTB domain-containing protein 5 [Homo sapiens].
Length = 677
Score = 82.4 bits (202), Expect = 6e-16
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
M+ P + Q+ QQL Q CDC I +G +F+AH+ VLAA S F+ L D
Sbjct: 1 MDFPGHFEQIFQQLNYQRLHGQLCDCVIVVGNRHFKAHRSVLAACSTHFRALFSVAEGDQ 60
Query: 484 T-DTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLT 660
T + I +D+ VV+ E FA L++MMYT L +G+ N ++ A L + V +CK+ LT
Sbjct: 61 TMNMIQLDSEVVTAEAFAALIDMMYTSTLMLGESNVMDVLLAASHLHLNSVVKACKHYLT 120
Query: 661 S 663
+
Sbjct: 121 T 121
>ref|NP_055909.2| hypermethylated in cancer 2 protein [Homo sapiens].
Length = 615
Score = 82.0 bits (201), Expect = 7e-16
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 4/131 (3%)
Frame = +1
Query: 277 WKKRGRELLDRADAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAAS 456
W RG D MELP++S+QLL QL + CD I + FRAHK VLAA+S
Sbjct: 13 WAGRG----DMGPDMELPSHSKQLLLQLNQQRTKGFLCDVIIMVENSIFRAHKNVLAASS 68
Query: 457 LLFKTLLDNTDTISIDASVVSPEEFALLLEMMYTGKL----PVGKHNFSKIISLADSLQM 624
+ FK+L+ + + I++D +VS F +L+ +YTGKL + NFS +++ A LQ+
Sbjct: 69 IYFKSLVLHDNLINLDTDMVSSTVFQQILDFIYTGKLLPSDQPAEPNFSTLLTAASYLQL 128
Query: 625 FDVAVSCKNLL 657
++A C+ L
Sbjct: 129 PELAALCRRKL 139
>ref|NP_001035531.1| zinc finger and BTB domain-containing protein 8A [Homo sapiens].
Length = 441
Score = 75.1 bits (183), Expect = 9e-14
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLL-----DN 483
ME+ ++ LLQQL ++ FCDC+I + F+AH+ VL A+S FK LL +
Sbjct: 1 MEISSHQSHLLQQLNEQRRQDVFCDCSILVEGKVFKAHRNVLFASSGYFKMLLSQNSKET 60
Query: 484 TDTISIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNLLTS 663
+ + SP+ F ++L+ +Y+GKL + N +++S A LQM DV CK + S
Sbjct: 61 SQPTTATFQAFSPDTFTVILDFVYSGKLSLTGQNVIEVMSAASFLQMTDVISVCKTFIKS 120
Query: 664 LVSCS 678
+ S
Sbjct: 121 SLDIS 125
>ref|NP_001091672.1| hypermethylated in cancer 1 protein isoform 2 [Homo sapiens].
Length = 733
Score = 75.1 bits (183), Expect = 9e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 22 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 81
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 82 LNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 141
Query: 634 AVSCKNLL 657
CK L
Sbjct: 142 VALCKKRL 149
>ref|NP_006488.2| hypermethylated in cancer 1 protein isoform 1 [Homo sapiens].
Length = 714
Score = 75.1 bits (183), Expect = 9e-14
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 13/128 (10%)
Frame = +1
Query: 313 DAMELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTLLDNTDT 492
D ME P +SRQLL QL + CD I + FRAHK VLAA+S K+L+ + +
Sbjct: 3 DTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNL 62
Query: 493 ISIDASVVSPEEFALLLEMMYTGKL-------------PVGKHNFSKIISLADSLQMFDV 633
+++D +VSP F L+L+ +YTG+L P + + +++ A LQ+ D+
Sbjct: 63 LNLDHDMVSPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIPDL 122
Query: 634 AVSCKNLL 657
CK L
Sbjct: 123 VALCKKRL 130
>ref|NP_003434.2| zinc finger and BTB domain-containing protein 17 isoform 2 [Homo
sapiens].
Length = 803
Score = 74.3 bits (181), Expect = 2e-13
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +1
Query: 319 MELPNYSRQLLQQLYTLCKEQQFCDCTISIGTIYFRAHKLVLAAASLLFKTL-LDNTDTI 495
M+ P +S+ +L+QL + CDCT + ++F+AHK VLAA S FK L +D D +
Sbjct: 1 MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDVV 60
Query: 496 SIDASVVSPEEFALLLEMMYTGKLPVGKHNFSKIISLADSLQMFDVAVSCKNL 654
+D S + +LE MYT KL + N ++++A LQM D+ +C L
Sbjct: 61 HLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHAL 111
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,899,317
Number of extensions: 1062589
Number of successful extensions: 5526
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 5362
Number of HSP's successfully gapped: 85
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014837
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893957.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1346 0.0
Sscrofa_Chr06 289 1e-75
>gb|GL893957.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2670
Length = 80571
Score = 1346 bits (679), Expect = 0.0
Identities = 710/719 (98%), Gaps = 1/719 (0%)
Strand = Plus / Plus
Query: 245 aggatctagtactgatccccacaaagttattctggaagaagcgagggagagagctcttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7007 aggatctagtactgatccccacaaagttattctggaagaagcgagggagagagctcttgg 7066
Query: 305 acagagctgatgcaatggagctccccaactatagccggcagctgctgcagcagctctaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7067 acagagctgatgcaatggagctccccaactatagccggcagctgctgcagcagctctaca 7126
Query: 365 ctctgtgcaaggaacagcagttctgtgactgcacgatttccatcggtactatttacttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7127 ctctgtgcaaggaacagcagttctgtgactgcacgatttccatcggtactatttacttca 7186
Query: 425 gggcccacaagcttgtcctggccgccgccagcctcttgttcaaaaccctgctggacaaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7187 gggcccacaagcttgtcctggccgccgccagcctcttgttcaaaaccctgctggacaaca 7246
Query: 485 cagacaccatctccatcgatgcatccgtggtcagccccgaagagtttgccctcttgttag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7247 cagacaccatctccatcgatgcatccgtggtcagccccgaagagtttgccctcttgttag 7306
Query: 545 aaatgatgtacactggcaaactacctgtgggcaagcacaacttctccaaaatcatctctt 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7307 aaatgatgtacactggcaaactacctgtgggcaagcacaacttctccaaaattatctctt 7366
Query: 605 tagccgacagcctacagatgtttgatgtggccgttagttgtaaaaatcttctgaccagcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7367 tagccgacagcctacagatgtttgatgtggccgttagttgtaaaaatcttctgaccagcc 7426
Query: 665 tcgtaagctgctctgttcagggtcaggtggtgagggatgtctccagcccatcctcagatt 724
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7427 tcgtaagctgctctgttcagggtcaggtggtgagggatgtctccagcccatcctcagagt 7486
Query: 725 catccaggaaggagtcagagaaccctgaagtagaaatcctttcctctgagggggctggag 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 catccaggaaggagtcagagaaccctgaagtagaaatcctttcctctgagggggctggag 7546
Query: 785 aacttcattcctccagggaggcttccagcccgcaagagggccctgtaaaaggtgagacgg 844
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7547 aacttcattcctccagggaggcttccagcccgcaagggggccctgtaaaaggtgagacgg 7606
Query: 845 aggaagcaatccacacggttgtgcaggagatgagtgtggatccttccgctgcccaggaga 904
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7607 aggaagcaatccacacggttgtgcaggagatgagtgtggatccttccactgcccaggaga 7666
Query: 905 tccaggggaaaggcgagagcccagcgg-agccccccgtacagctgacgtctgttcttcc 962
|||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 7667 tccaggggaatgcggagagcccagcggaacccccccgtacagctgacgtctgttcttcc 7725
>Sscrofa_Chr06
|| Length = 157765593
Score = 289 bits (146), Expect = 1e-75
Identities = 153/154 (99%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 1 tatacccgttctgcgccggcctcaaaatggccgccttctggcgtatctggcgctgttgaa 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 74418305 tatacccgttctgcgccggc-tcaaaatggccgccttctggcgtatctggcgctgttgaa 74418247
Query: 61 tggagaaagctttattgttcccttcgggcaggagtgttcgtgtcctctatggcgctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74418246 tggagaaagctttattgttcccttcgggcaggagtgttcgtgtcctctatggcgctgtca 74418187
Query: 121 ataaagaacggcagtttgaatcggtgctgaacag 154
||||||||||||||||||||||||||||||||||
Sbjct: 74418186 ataaagaacggcagtttgaatcggtgctgaacag 74418153
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,951,210
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)