Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003265.1| beta-2-glycoprotein 1 precursor [Canis lupus... 449 e-126
Alignment gi|XP_855585.1| PREDICTED: apolipoprotein H [Canis familiaris]. 449 e-126
Alignment gi|XP_532030.2| PREDICTED: similar to sushi, von Willebrand fac... 74 2e-13
Alignment gi|XP_547380.2| PREDICTED: similar to Coagulation factor XIII B... 72 9e-13
Alignment gi|XP_857962.1| PREDICTED: similar to Complement factor H precu... 70 4e-12
Alignment gi|XP_857918.1| PREDICTED: similar to Complement factor H precu... 69 5e-12
Alignment gi|XP_857879.1| PREDICTED: similar to Complement factor H precu... 69 5e-12
Alignment gi|XP_857842.1| PREDICTED: similar to complement component fact... 69 5e-12
Alignment gi|XP_857806.1| PREDICTED: similar to Complement factor H precu... 69 5e-12
Alignment gi|XP_857768.1| PREDICTED: similar to Complement factor H precu... 69 5e-12
>ref|NP_001003265.1| beta-2-glycoprotein 1 precursor [Canis lupus familiaris].
Length = 345
Score = 449 bits (1156), Expect = e-126
Identities = 216/345 (62%), Positives = 243/345 (70%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
MI LI F S LCH A AGRTCPKP+++PFA VVPLK+ Y PGE+I YTCQPGYV RG
Sbjct: 1 MISLGLILFSSVLCHVATAGRTCPKPDDIPFATVVPLKTFYDPGEQIAYTCQPGYVFRGL 60
Query: 225 IRRF------------------ICPLTGL------------------------------- 257
RRF +CP G+
Sbjct: 61 TRRFTCPLTGVWPTNTVRCIPRVCPFAGILENGAVRYTTFEYPNTISFACNTGFYLNGSS 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W ++ FA LSV+KPLA NNSLYG KAVFECLP +AM
Sbjct: 121 SAKCTEEGKWSVDLPVCTRVTCPPPSVPKFATLSVFKPLATNNSLYGNKAVFECLPHYAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGN TITCT HGNWT LPEC+EVKCPFPSRP+NGFVNYPAKQ+LYY+DKA YGCHDTYTL
Sbjct: 181 FGNDTITCTAHGNWTTLPECREVKCPFPSRPDNGFVNYPAKQILYYKDKAMYGCHDTYTL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPE VECNKFGNWSAQPSCKASCKLSVK+ATV+Y+GERV +Q+KFK+GMLHGQK+SF+C
Sbjct: 241 DGPEVVECNKFGNWSAQPSCKASCKLSVKKATVLYQGERVKLQEKFKDGMLHGQKVSFYC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYTEDA+CIDGTIEIPKCFKEHS+LAFWKTDAS+VKPC
Sbjct: 301 KNKEKKCSYTEDAECIDGTIEIPKCFKEHSSLAFWKTDASDVKPC 345
>ref|XP_855585.1| PREDICTED: apolipoprotein H [Canis familiaris].
Length = 345
Score = 449 bits (1156), Expect = e-126
Identities = 216/345 (62%), Positives = 243/345 (70%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
MI LI F S LCH A AGRTCPKP+++PFA VVPLK+ Y PGE+I YTCQPGYV RG
Sbjct: 1 MISLGLILFSSVLCHVATAGRTCPKPDDIPFATVVPLKTFYDPGEQIAYTCQPGYVFRGL 60
Query: 225 IRRF------------------ICPLTGL------------------------------- 257
RRF +CP G+
Sbjct: 61 TRRFTCPLTGVWPTNTVRCIPRVCPFAGILENGAVRYTTFEYPNTISFACNTGFYLNGSS 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W ++ FA LSV+KPLA NNSLYG KAVFECLP +AM
Sbjct: 121 SAKCTEEGKWSVDLPVCTRVTCPPPSVPKFATLSVFKPLATNNSLYGNKAVFECLPHYAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGN TITCT HGNWT LPEC+EVKCPFPSRP+NGFVNYPAKQ+LYY+DKA YGCHDTYTL
Sbjct: 181 FGNDTITCTAHGNWTTLPECREVKCPFPSRPDNGFVNYPAKQILYYKDKAMYGCHDTYTL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPE VECNKFGNWSAQPSCKASCKLSVK+ATV+Y+GERV +Q+KFK+GMLHGQK+SF+C
Sbjct: 241 DGPEVVECNKFGNWSAQPSCKASCKLSVKKATVLYQGERVKLQEKFKDGMLHGQKVSFYC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYTEDA+CIDGTIEIPKCFKEHS+LAFWKTDAS+VKPC
Sbjct: 301 KNKEKKCSYTEDAECIDGTIEIPKCFKEHSSLAFWKTDASDVKPC 345
>ref|XP_532030.2| PREDICTED: similar to sushi, von Willebrand factor type A, EGF and
pentraxin domain containing 1 [Canis familiaris].
Length = 3569
Score = 73.6 bits (179), Expect = 2e-13
Identities = 53/184 (28%), Positives = 72/184 (39%), Gaps = 2/184 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C P + F V P S+ G + Y+C G+ RG C G W
Sbjct: 2380 CLPPPLISFGVPAP-SSALHFGSTVKYSCVDGFFLRGDPTTS-CQADGTWSSPLPECVPV 2437
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPE 467
+ V Y A++ C P + GN TI C E+G W P
Sbjct: 2438 ECPHPEEILNGIIDV------QGLAYLSTALYTCKPGFELVGNTTILCGENGQWLGGKPT 2491
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-P 644
CK V+CP P NG +Y L+Y TY C + L+GP+ + C + G+W P
Sbjct: 2492 CKPVECPKPREISNGKFSYTH---LHYGQTITYSCRRGFRLEGPKALTCLETGDWDMDVP 2548
Query: 645 SCKA 656
SC A
Sbjct: 2549 SCSA 2552
Score = 71.6 bits (174), Expect = 9e-13
Identities = 42/116 (36%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K F C + + G ITC E G W++ LP C+ V C P+ PENG ++ +
Sbjct: 1807 GAKVTFSCKEGYQLVGATKITCLESGEWSDLLPYCEAVFCGVPAIPENGDIDVSS---FT 1863
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC---KASCKLSVKRATVIYEG 701
Y K TY C+ YTL+G +E C G+WS + P C K S S+ I G
Sbjct: 1864 YGSKVTYRCNKGYTLNGAKESSCLASGSWSHSLPVCELVKCSSPESINNGKYILSG 1919
Score = 68.2 bits (165), Expect = 1e-11
Identities = 59/214 (27%), Positives = 76/214 (35%), Gaps = 17/214 (7%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
+ Y +EI YTC G+ G R +C G W T V
Sbjct: 2845 NQYTFQKEIEYTCNVGFFLEGDRSR-VCLADGHWSGTTPICVPVRC------------VT 2891
Query: 339 KPLAGNNSL------YGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPS 497
P N + +G + VF C + + G +TC GNW E P CK V C P
Sbjct: 2892 PPQVANGVMDGLDYGFGKEVVFHCQDGYMLHGAPKLTCQSDGNWDAEFPSCKPVNCGPPE 2951
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVK 677
P +GF N + Y+ Y C Y L G C G+WS P C+ S
Sbjct: 2952 DPPHGFPNGFS---FYHGGHIQYQCFPGYKLYGSPSRRCLSDGSWSGSPPSCLPCRCS-- 3006
Query: 678 RATVIYEGERVNIQD----------KFKNGMLHG 749
T + + VN D FK LHG
Sbjct: 3007 --TPVIQNGAVNGTDFGCGKVAQIQCFKGFKLHG 3038
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 2/164 (1%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y G ++ ++C+ GY G + C +G W + V
Sbjct: 1804 YTLGAKVTFSCKEGY-QLVGATKITCLESGEWSDLLPYCEAVFCGVPAIPENGDIDV--- 1859
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVN 521
++ YG K + C + + G +C G+W+ LP C+ VKC P NG
Sbjct: 1860 ---SSFTYGSKVTYRCNKGYTLNGAKESSCLASGSWSHSLPVCELVKCSSPESINNGKYI 1916
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
L Y A+Y C Y+L GP +EC+ G+W A P+C
Sbjct: 1917 LSG---LTYLSTASYSCESGYSLQGPSVIECSASGSWDRAPPTC 1957
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 5/169 (2%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
+++ G + YTC PGY G IC G W + L
Sbjct: 2671 ANFPYGTIVSYTCNPGYELLGS-PMLICQEDGTWNGSAPSCISIECDLPVAPENGFLHFT 2729
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PECKEVKCPFPSRPENGF 515
+ GN Y C P H + G+ C ++ W+ P C+ + CP P+ NG
Sbjct: 2730 ETTMGNAVQY------ICKPGHILLGSDMRFCLQNREWSGTSPRCEAISCPKPNPIMNGS 2783
Query: 516 V---NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSC 650
V NY VLYYQ C+ Y L+GPE C + W ++P+C
Sbjct: 2784 VKGSNYTYLSVLYYQ------CNPGYVLNGPERRTCQQNNKWDESEPTC 2826
Score = 62.0 bits (149), Expect = 7e-10
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVL 542
+G + C+ + G+ T +C G W+ LPEC V+CP P NG ++ Q L
Sbjct: 2399 FGSTVKYSCVDGFFLRGDPTTSCQADGTWSSPLPECVPVECPHPEEILNGIIDV---QGL 2455
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKASCKLSVKRATVIYEGERVNIQ 719
Y A Y C + L G + C + G W +P+CK + + I G
Sbjct: 2456 AYLSTALYTCKPGFELVGNTTILCGENGQWLGGKPTCK---PVECPKPREISNG------ 2506
Query: 720 DKFKNGMLH-GQKISFFCRNKEKKCSYTEDAQCI---DGTIEIPKCFKEH 857
KF LH GQ I++ CR + + + C+ D +++P C H
Sbjct: 2507 -KFSYTHLHYGQTITYSCR-RGFRLEGPKALTCLETGDWDMDVPSCSAIH 2554
Score = 58.5 bits (140), Expect = 8e-09
Identities = 57/218 (26%), Positives = 80/218 (36%), Gaps = 5/218 (2%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C PE+ P P S+ G I Y C PGY G R C G W +
Sbjct: 2947 CGPPEDPPHGF--PNGFSFYHGGHIQYQCFPGYKLYGSPSRR-CLSDGSWSGSPPSCLPC 3003
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYG-GK-AVFECLPQHAMFGNGTITCTEHGNWTE-L 461
V + A N + +G GK A +C + G ITC + W+
Sbjct: 3004 R---------CSTPVIQNGAVNGTDFGCGKVAQIQCFKGFKLHGVSEITCEANDQWSSGF 3054
Query: 462 PECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-A 638
P C+ C P N F++ ++ TY C Y + G ++ C + G WS
Sbjct: 3055 PRCEHTSCGSPPVIPNAFISESGS---LEENVITYNCRSGYVIQGSSDLVCTEKGTWSQP 3111
Query: 639 QPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
P+C+ SC A + GE + K K L G
Sbjct: 3112 YPACEPLSCGSPPSVANAVATGEAHVYESKVKLRCLEG 3149
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K C P M GN C G WT+ LP C+ + C P ENGF Y A+ +
Sbjct: 1650 GSKISLFCDPGFQMVGNPVQYCLNQGQWTQPLPHCERISCGVPPPLENGF--YSAED-FH 1706
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
TY C++ Y L G + C G+W+ PSC
Sbjct: 1707 AGSTVTYQCNNGYYLLGDSRMFCTDNGSWNGISPSC 1742
Score = 55.1 bits (131), Expect = 9e-08
Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 4/224 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPL-KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
C KP + ++++ + K+ +A G + + C G+V + C G W N
Sbjct: 2082 CEKPPSVSYSILESVSKAKFAAGSVVSFKCMEGFVLNTSAK-IECLKGGQW--NPSPMSI 2138
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
+ ++ Y +G N +G + C + G TC G W+ P
Sbjct: 2139 QCIPVRCGEPPSIMNGYA--SGTNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPTP 2196
Query: 465 ECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQP 644
C V C P + ENGF+ + ++ ++ + Y C+ Y G C +W ++
Sbjct: 2197 TCHPVSCNEPPKVENGFLEHTTGRI--FESEVRYQCNPGYKSVGSPVFVCQANRHWHSE- 2253
Query: 645 SCKASCKLSVKRATVIYEGERVNIQDKFKNG--MLHGQKISFFC 770
S + G+ IQ+ + G G K+ FFC
Sbjct: 2254 --------SPLSCVPLNCGKPPPIQNGYMKGENFEVGSKVQFFC 2289
Score = 54.7 bits (130), Expect = 1e-07
Identities = 57/243 (23%), Positives = 81/243 (33%), Gaps = 57/243 (23%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C KPE V K S+ ++Y C+ GY +G R +C W
Sbjct: 3238 SCGKPESPEHGFVFGSKYSFE--STVIYQCETGYELQGNKER-VCQKNRRWSGEVATCKK 3294
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-P 464
K V N+ G + V+ C +++ G I CT HG W+ P
Sbjct: 3295 TRCEAPLGFLNGKAEV------ENTTAGLRVVYSCNRGYSLEGAPEIHCTGHGVWSHPHP 3348
Query: 465 ECKEVKCPFPSR-PEN--------------------GFV--------------------- 518
CK CP P PEN GF+
Sbjct: 3349 LCKPNPCPVPFVIPENAVLSEKEFYVDQNVSIKCREGFLLQGWGIITCNPDETWTVTNAK 3408
Query: 519 -------------NYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKA 656
N A+ + Y Y D TY C+ Y L+G C + G W++ P C+A
Sbjct: 3409 CEKISCGPPTHVGNAIARGIHYQYGDMITYSCYSGYMLEGSLRSICLENGTWTSPPICRA 3468
Query: 657 SCK 665
C+
Sbjct: 3469 VCR 3471
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 3/171 (1%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
SS+ G ++ Y C GY G + C +G W + K +
Sbjct: 1860 SSFTYGSKVTYRCNKGYTLNGA-KESSCLASGSWSHSLPVCELVKCSSPESINNGKYIL- 1917
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGF 515
+ Y A + C +++ G I C+ G+W P C V C P ++
Sbjct: 1918 -----SGLTYLSTASYSCESGYSLQGPSVIECSASGSWDRAPPTCHLVVCGEPPAIKDAV 1972
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW--SAQPSCKASC 662
+ + + + TY C + YTL GP+ +EC G W S Q SC
Sbjct: 1973 IT---GRNFTFGNTVTYTCKEGYTLAGPDTIECLANGKWNGSNQQCLAVSC 2020
Score = 53.9 bits (128), Expect = 2e-07
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXX 284
+ CP P + A ++ ++ +++ +C GY+ G + C L G W
Sbjct: 3177 KKCPLPANI--AHILVQGDDFSVNKQVSVSCAEGYIYEG-VNISTCQLDGTWE------- 3226
Query: 285 XXXXXXXXXXXFAKLSVYKP-------LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEH 443
+ +S KP + G+ + +++C + + GN C ++
Sbjct: 3227 ----PPFSDESCSPVSCGKPESPEHGFVFGSKYSFESTVIYQCETGYELQGNKERVCQKN 3282
Query: 444 GNWT-ELPECKEVKCPFPSRPENGFVNYPAK-QVLYYQDKATYGCHDTYTLDGPEEVECN 617
W+ E+ CK+ +C P GF+N A+ + + Y C+ Y+L+G E+ C
Sbjct: 3283 RRWSGEVATCKKTRCEAPL----GFLNGKAEVENTTAGLRVVYSCNRGYSLEGAPEIHCT 3338
Query: 618 KFGNWS-AQPSCK 653
G WS P CK
Sbjct: 3339 GHGVWSHPHPLCK 3351
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/168 (26%), Positives = 63/168 (37%), Gaps = 10/168 (5%)
Frame = +3
Query: 180 EIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP----- 344
E+ Y C PGY S G F+C W + L+ KP
Sbjct: 2225 EVRYQCNPGYKSVGS-PVFVCQANRHWHSESPLSC------------VPLNCGKPPPIQN 2271
Query: 345 --LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL--PECKEVKCPFPSRPENG 512
+ G N G K F C + G+ + TC + G W + +C KCP P EN
Sbjct: 2272 GYMKGENFEVGSKVQFFCNEGFELIGDNSWTCQKSGKWNKKLNQKCVPAKCPEPPLLENQ 2331
Query: 513 FVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
V K++ T C + + L GP ++C W+ + P CK
Sbjct: 2332 LV---LKELATEVGVVTLSCKEGHALQGPSVLKCLPSQQWNDSFPVCK 2376
Score = 51.6 bits (122), Expect = 1e-06
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +3
Query: 357 NSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAK 533
N YG + C P + + G+ + C E G W P C ++C P PENGF+++
Sbjct: 2672 NFPYGTIVSYTCNPGYELLGSPMLICQEDGTWNGSAPSCISIECDLPVAPENGFLHFTET 2731
Query: 534 QVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKA-SC 662
+ + Y C + L G + C + WS P C+A SC
Sbjct: 2732 TM---GNAVQYICKPGHILLGSDMRFCLQNREWSGTSPRCEAISC 2773
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/243 (23%), Positives = 91/243 (37%), Gaps = 8/243 (3%)
Frame = +3
Query: 114 PKPEELPFAVVVPLKSSYAPGEE------IVYTCQPGYVSRGGIRRFICPLTGLWPINTX 275
P E + V PL++ + E+ + Y C GY G R F C G W
Sbjct: 1682 PHCERISCGVPPPLENGFYSAEDFHAGSTVTYQCNNGYYLLGDSRMF-CTDNGSW----N 1736
Query: 276 XXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT 455
+ S Y N Y + C+P + G+G C E
Sbjct: 1737 GISPSCLDVDECAVGSDCSEYASCLNTNGSY----ICSCIPPYT--GDGK-NCAE----- 1784
Query: 456 ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
+KC P PENG Y + ++ K T+ C + Y L G ++ C + G WS
Sbjct: 1785 ------PIKCKAPGNPENG---YSSGEIYTLGAKVTFSCKEGYQLVGATKITCLESGEWS 1835
Query: 636 -AQPSCKA-SCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
P C+A C + I E +++ + +G K+++ C NK + +++
Sbjct: 1836 DLLPYCEAVFCGV-----PAIPENGDIDV-----SSFTYGSKVTYRC-NKGYTLNGAKES 1884
Query: 810 QCI 818
C+
Sbjct: 1885 SCL 1887
>ref|XP_547380.2| PREDICTED: similar to Coagulation factor XIII B chain precursor
(Protein-glutamine gamma-glutamyltransferase B chain)
(Transglutaminase B chain) (Fibrin stabilizing factor B
subunit) [Canis familiaris].
Length = 651
Score = 71.6 bits (174), Expect = 9e-13
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Frame = +3
Query: 354 NNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFVN 521
N+++Y G K +EC + + G ITC + G WT PEC E C P NG V
Sbjct: 349 NSTIYYNGDKVAYECKSGYHLRGATEITC-KRGKWTRPPECIENIENCKPPPNVINGAVV 407
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEG 701
Y C++ Y L G + C + G WS+ P C C ++V R +Y
Sbjct: 408 DGLLASYTTGSSVEYRCNEYYLLSGAKVSHCEQ-GEWSSPPICLEPCTINVDR---MYR- 462
Query: 702 ERVNIQDKFKNGMLHGQKISFFCR---NKEKKCSYTE-DAQCIDGTIEIPKCFKEHS 860
+ ++ K++ +LHG I F C+ + S +E QC G + P C ++ S
Sbjct: 463 NNIEMKWKYEGKVLHGDLIDFVCKQGYDLSPSNSLSELSVQCNRGEVRYPLCIRKES 519
Score = 57.0 bits (136), Expect = 2e-08
Identities = 59/255 (23%), Positives = 96/255 (37%), Gaps = 16/255 (6%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFI--CPLTGLWPINTXX 278
+ C KPE L + +K Y E + Y C GY + GG + C G P T
Sbjct: 89 KKCTKPE-LRNGYISDVKLMYKIQENMRYGCNSGYKTTGGKDEEVVQCLADGWSPQPTCR 147
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGN--W 452
+ K + K +EC P + G TE W
Sbjct: 148 EEHETCLVPELYHGNYSTTQKTFRVKD-----KVQYECAPGYYTAGGKKTEETECHTYGW 202
Query: 453 TELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P+C ++KC +NG+ +P KQ D + CH+ Y L G + ++C FG +
Sbjct: 203 ALTPKCTKLKCSSLKLIQNGYF-HPIKQTYEEGDVVQFFCHENYYLSGSDLIQCYNFGWY 261
Query: 633 SAQPSCKA------------SCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRN 776
P C+ + K+ +T GE V+++ + + ++I C N
Sbjct: 262 PESPVCEGRRNRCPPPPLPLNSKIQT-HSTTYRHGETVHVECELNFEIQGSEEIR--CEN 318
Query: 777 KEKKCSYTEDAQCID 821
+ +TE +CI+
Sbjct: 319 GK----WTEPPKCIE 329
Score = 56.6 bits (135), Expect = 3e-08
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 5/172 (2%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKL 329
P+K +Y G+ + + C Y G C G +P + L
Sbjct: 226 PIKQTYEEGDVVQFFCHENYYLSGS-DLIQCYNFGWYPESPVCEGRRNRCPPPP-----L 279
Query: 330 SVYKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELPEC---KEVKCPFP 494
+ + +++ Y G EC + G+ I C E+G WTE P+C K+ C P
Sbjct: 280 PLNSKIQTHSTTYRHGETVHVECELNFEIQGSEEIRC-ENGKWTEPPKCIEEKKTPCGNP 338
Query: 495 SRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSC 650
ENG N + + Y DK Y C Y L G E+ C K G W+ P C
Sbjct: 339 PFIENGAANLNS-TIYYNGDKVAYECKSGYHLRGATEITC-KRGKWTRPPEC 388
>ref|XP_857962.1| PREDICTED: similar to Complement factor H precursor (H factor 1)
isoform 14 [Canis familiaris].
Length = 1169
Score = 69.7 bits (169), Expect = 4e-12
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 5/236 (2%)
Frame = +3
Query: 153 LKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLS 332
L+ +Y G + Y C+PG+ + G I + G W + A
Sbjct: 38 LQQTYPEGTQATYKCRPGFRTLGAI--IMECKNGEW-VALNPSRICQRRPCGHPGDASFG 94
Query: 333 VYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPE- 506
+ GN YG K V+ C + + G E WT ++P C+E+ C +PE
Sbjct: 95 SFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDGWTNDIPICEEISC---QKPEI 151
Query: 507 -NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCK-ASCKLSVKR 680
NG++ + KQ ++ Y CH Y + C K G W PSCK A C
Sbjct: 152 INGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-WIPSPSCKEALCP----- 204
Query: 681 ATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCID-GTIEIPKC 845
I G+ K+++ G I++ C++ Y A C D G + +P+C
Sbjct: 205 PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKATCTDVGWVPLPRC 256
Score = 60.1 bits (144), Expect = 3e-09
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 4/230 (1%)
Frame = +3
Query: 147 VPLKSSYAPGEEIVYTCQPGYVSRG--GIRRFICPLTGLWPINTXXXXXXXXXXXXXXXF 320
+P K Y G+ + ++C+P ++ G I+ + + ++PI
Sbjct: 513 IPKKDKYKVGDVLKFSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGE 572
Query: 321 AKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSR 500
K K +N L + C + M G I C + G WT+LP C EV+
Sbjct: 573 VK-ETQKETYEHNDL----VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTCGDI 626
Query: 501 PE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSV 674
PE G V + ++ D + C + YT+ GP+ + C G W+ P C A+ +L
Sbjct: 627 PELDYGSVVESSNSPYHHGDSVEFSCKEEYTMVGPKSITCIS-GMWTEPPQCIATDEL-- 683
Query: 675 KRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDG 824
K+ T N D H IS+ CR K+ +++ CI+G
Sbjct: 684 KKCTYRLTKYEANPLDNII--FDHNDNISYKCRRTLKQ----KNSTCING 727
Score = 60.1 bits (144), Expect = 3e-09
Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 5/179 (2%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW---PINTXXXXXXXXXXXXXXXF 320
P K Y E++ Y C P Y G F+ L G W P+
Sbjct: 944 PKKVLYRSEEKVTYRC-PTYYHMDG-PNFVQCLNGQWIGSPVCKDMSCESPPKVKNAIVL 1001
Query: 321 AKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFP 494
+ S Y P G +EC+ +FG +TC +G WT P+C E KC P
Sbjct: 1002 NERSRYLP--------GWSVHYECIKPFDLFGEAEVTCL-NGTWTNPPQCGESKGKCGPP 1052
Query: 495 SRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
+NG + + Y C Y L G V C G W+ P C +C +S
Sbjct: 1053 PPIDNGDITSFPLSAYAPESTVEYKCQSLYALQGNRIVRCRN-GQWTKPPKCLDACVVS 1110
Score = 58.5 bits (140), Expect = 8e-09
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 8/194 (4%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPI--NTXX 278
++CP P ++P A V ++ GE++ CQ Y+ + +C G W
Sbjct: 741 QSCPPPPQIPNAQNVITTVNFKDGEKVSVVCQDDYIIQDA-EEIVCK-DGRWQSVPRCIE 798
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSL-----YGGKAVFECLPQHAMFGNGTITCTEH 443
K S++ S +G K + C + ITC +
Sbjct: 799 KIPCPQPSPIEHGTIKSSIFSEEIEETSKPKSYPHGSKLNYTCEDGFRVSEKDEITC-QM 857
Query: 444 GNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKF 623
G W+ LP C + C P+ + Y ++ Y C D + +DGP V+C
Sbjct: 858 GKWSSLPRCVGLPCAPPAYMVTHGILIQQSDSYQYGEEVMYKCDDGFAIDGPASVKC-LG 916
Query: 624 GNWSAQPSC-KASC 662
G WS P C K C
Sbjct: 917 GKWSNPPKCIKTDC 930
Score = 56.6 bits (135), Expect = 3e-08
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLY 545
YG + +++C A+ G ++ C G W+ P+C + C F + K+VLY
Sbjct: 892 YGEEVMYKCDDGFAIDGPASVKCLG-GKWSNPPKCIKTDC-FNLPSFGNAIPIGPKKVLY 949
Query: 546 Y-QDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCK-ASCKL--SVKRATVIYEGER 707
++K TY C Y +DGP V+C G W P CK SC+ VK A V+ E R
Sbjct: 950 RSEEKVTYRCPTYYHMDGPNFVQCLN-GQWIGSPVCKDMSCESPPKVKNAIVLNERSR 1006
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
G+I C + G W+ P C E++C P + + + P K D + C + GP
Sbjct: 481 GSIVCGDDG-WSHKPACFEIECKIP-KIDAQLLPIPKKDKYKVGDVLKFSCRPRFIRVGP 538
Query: 600 EEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNK 779
E ++C FG P CK K ++ GE +++ K H + + C +
Sbjct: 539 ESIQCYHFGWSPVFPICKEQTKHCAAPPHLL-NGE---VKETQKETYEHNDLVEYVCNTR 594
Query: 780 EKKCSYTEDAQCIDGT-IEIPKCFKEHS 860
+ + QCIDG ++P C + S
Sbjct: 595 FLMKGFNK-IQCIDGEWTDLPMCIEVES 621
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFVNYPAKQVLYYQDK 557
F C P+ G +I C G P CKE C P NG V K+ + D
Sbjct: 527 FSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGEVKETQKETYEHNDL 586
Query: 558 ATYGCHDTYTLDGPEEVECNKFGNWSAQPSC---KASCKLSVKRATVIYEGERVNIQDKF 728
Y C+ + + G +++C G W+ P C +++C I E + ++ +
Sbjct: 587 VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTC-------GDIPELDYGSVVESS 638
Query: 729 KNGMLHGQKISFFCRN-------KEKKC---SYTEDAQCIDGTIEIPKC 845
+ HG + F C+ K C +TE QCI T E+ KC
Sbjct: 639 NSPYHHGDSVEFSCKEEYTMVGPKSITCISGMWTEPPQCI-ATDELKKC 686
>ref|XP_857918.1| PREDICTED: similar to Complement factor H precursor (H factor 1)
isoform 13 [Canis familiaris].
Length = 1057
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 6/253 (2%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
R C P + F + + + G ++VYTC GY G I C G W +
Sbjct: 83 RPCGHPGDASFGSFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
+L+ + +G FEC + G I C+ +G W+ E
Sbjct: 142 EVVKCLPVTEPENGRLASIPLESDQEYTFGNVVRFECNSGFMLDGPSEIHCSANGIWSAE 201
Query: 459 LPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C E+ C +PE NG++ + KQ ++ Y CH Y + C K G W
Sbjct: 202 QPRCVEISC---QKPEIINGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-W 256
Query: 633 SAQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
PSCK A C I G+ K+++ G I++ C++ Y A
Sbjct: 257 IPSPSCKEALCP-----PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKA 307
Query: 810 QCID-GTIEIPKC 845
C D G + +P+C
Sbjct: 308 TCTDVGWVPLPRC 320
Score = 60.1 bits (144), Expect = 3e-09
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 4/230 (1%)
Frame = +3
Query: 147 VPLKSSYAPGEEIVYTCQPGYVSRG--GIRRFICPLTGLWPINTXXXXXXXXXXXXXXXF 320
+P K Y G+ + ++C+P ++ G I+ + + ++PI
Sbjct: 577 IPKKDKYKVGDVLKFSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGE 636
Query: 321 AKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSR 500
K K +N L + C + M G I C + G WT+LP C EV+
Sbjct: 637 VK-ETQKETYEHNDL----VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTCGDI 690
Query: 501 PE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSV 674
PE G V + ++ D + C + YT+ GP+ + C G W+ P C A+ +L
Sbjct: 691 PELDYGSVVESSNSPYHHGDSVEFSCKEEYTMVGPKSITCIS-GMWTEPPQCIATDEL-- 747
Query: 675 KRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDG 824
K+ T N D H IS+ CR K+ +++ CI+G
Sbjct: 748 KKCTYRLTKYEANPLDNII--FDHNDNISYKCRRTLKQ----KNSTCING 791
Score = 55.8 bits (133), Expect = 5e-08
Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 9/198 (4%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPI--NTXX 278
++CP P ++P A V ++ GE++ CQ Y+ + +C G W
Sbjct: 805 QSCPPPPQIPNAQNVITTVNFKDGEKVSVVCQDDYIIQDA-EEIVCK-DGRWQSVPRCIE 862
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSL-----YGGKAVFECLPQHAMFGNGTITCTEH 443
K S++ S +G K + C + ITC +
Sbjct: 863 KIPCPQPSPIEHGTIKSSIFSEEIEETSKPKSYPHGSKLNYTCEDGFRVSEKDEITC-QM 921
Query: 444 GNWTELPECKEVK--CPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECN 617
G W+ LP C E K C P +NG + + Y C Y L G V C
Sbjct: 922 GKWSSLPRCVESKGKCGPPPPIDNGDITSFPLSAYAPESTVEYKCQSLYALQGNRIVRCR 981
Query: 618 KFGNWSAQPSCKASCKLS 671
G W+ P C +C +S
Sbjct: 982 N-GQWTKPPKCLDACVVS 998
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
G+I C + G W+ P C E++C P + + + P K D + C + GP
Sbjct: 545 GSIVCGDDG-WSHKPACFEIECKIP-KIDAQLLPIPKKDKYKVGDVLKFSCRPRFIRVGP 602
Query: 600 EEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNK 779
E ++C FG P CK K ++ GE +++ K H + + C +
Sbjct: 603 ESIQCYHFGWSPVFPICKEQTKHCAAPPHLL-NGE---VKETQKETYEHNDLVEYVCNTR 658
Query: 780 EKKCSYTEDAQCIDGT-IEIPKCFKEHS 860
+ + QCIDG ++P C + S
Sbjct: 659 FLMKGFNK-IQCIDGEWTDLPMCIEVES 685
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFVNYPAKQVLYYQDK 557
F C P+ G +I C G P CKE C P NG V K+ + D
Sbjct: 591 FSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGEVKETQKETYEHNDL 650
Query: 558 ATYGCHDTYTLDGPEEVECNKFGNWSAQPSC---KASCKLSVKRATVIYEGERVNIQDKF 728
Y C+ + + G +++C G W+ P C +++C I E + ++ +
Sbjct: 651 VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTC-------GDIPELDYGSVVESS 702
Query: 729 KNGMLHGQKISFFCRN-------KEKKC---SYTEDAQCIDGTIEIPKC 845
+ HG + F C+ K C +TE QCI T E+ KC
Sbjct: 703 NSPYHHGDSVEFSCKEEYTMVGPKSITCISGMWTEPPQCI-ATDELKKC 750
>ref|XP_857879.1| PREDICTED: similar to Complement factor H precursor (H factor 1)
isoform 12 [Canis familiaris].
Length = 987
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 6/253 (2%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
R C P + F + + + G ++VYTC GY G I C G W +
Sbjct: 83 RPCGHPGDASFGSFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
+L+ + +G FEC + G I C+ +G W+ E
Sbjct: 142 EVVKCLPVTEPENGRLASIPLESDQEYTFGNVVRFECNSGFMLDGPSEIHCSANGIWSAE 201
Query: 459 LPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C E+ C +PE NG++ + KQ ++ Y CH Y + C K G W
Sbjct: 202 QPRCVEISC---QKPEIINGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-W 256
Query: 633 SAQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
PSCK A C I G+ K+++ G I++ C++ Y A
Sbjct: 257 IPSPSCKEALCP-----PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKA 307
Query: 810 QCID-GTIEIPKC 845
C D G + +P+C
Sbjct: 308 TCTDVGWVPLPRC 320
Score = 60.1 bits (144), Expect = 3e-09
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 4/230 (1%)
Frame = +3
Query: 147 VPLKSSYAPGEEIVYTCQPGYVSRG--GIRRFICPLTGLWPINTXXXXXXXXXXXXXXXF 320
+P K Y G+ + ++C+P ++ G I+ + + ++PI
Sbjct: 577 IPKKDKYKVGDVLKFSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGE 636
Query: 321 AKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSR 500
K K +N L + C + M G I C + G WT+LP C EV+
Sbjct: 637 VK-ETQKETYEHNDL----VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTCGDI 690
Query: 501 PE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSV 674
PE G V + ++ D + C + YT+ GP+ + C G W+ P C A+ +L
Sbjct: 691 PELDYGSVVESSNSPYHHGDSVEFSCKEEYTMVGPKSITCIS-GMWTEPPQCIATDEL-- 747
Query: 675 KRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDG 824
K+ T N D H IS+ CR K+ +++ CI+G
Sbjct: 748 KKCTYRLTKYEANPLDNII--FDHNDNISYKCRRTLKQ----KNSTCING 791
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
G+I C + G W+ P C E++C P + + + P K D + C + GP
Sbjct: 545 GSIVCGDDG-WSHKPACFEIECKIP-KIDAQLLPIPKKDKYKVGDVLKFSCRPRFIRVGP 602
Query: 600 EEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNK 779
E ++C FG P CK K ++ GE +++ K H + + C +
Sbjct: 603 ESIQCYHFGWSPVFPICKEQTKHCAAPPHLL-NGE---VKETQKETYEHNDLVEYVCNTR 658
Query: 780 EKKCSYTEDAQCIDGT-IEIPKCFKEHS 860
+ + QCIDG ++P C + S
Sbjct: 659 FLMKGFNK-IQCIDGEWTDLPMCIEVES 685
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFVNYPAKQVLYYQDK 557
F C P+ G +I C G P CKE C P NG V K+ + D
Sbjct: 591 FSCRPRFIRVGPESIQCYHFGWSPVFPICKEQTKHCAAPPHLLNGEVKETQKETYEHNDL 650
Query: 558 ATYGCHDTYTLDGPEEVECNKFGNWSAQPSC---KASCKLSVKRATVIYEGERVNIQDKF 728
Y C+ + + G +++C G W+ P C +++C I E + ++ +
Sbjct: 651 VEYVCNTRFLMKGFNKIQCID-GEWTDLPMCIEVESTC-------GDIPELDYGSVVESS 702
Query: 729 KNGMLHGQKISFFCRN-------KEKKC---SYTEDAQCIDGTIEIPKC 845
+ HG + F C+ K C +TE QCI T E+ KC
Sbjct: 703 NSPYHHGDSVEFSCKEEYTMVGPKSITCISGMWTEPPQCI-ATDELKKC 750
>ref|XP_857842.1| PREDICTED: similar to complement component factor h isoform 11
[Canis familiaris].
Length = 626
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 6/253 (2%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
R C P + F + + + G ++VYTC GY G I C G W +
Sbjct: 83 RPCGHPGDASFGSFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
+L+ + +G FEC + G I C+ +G W+ E
Sbjct: 142 EVVKCLPVTEPENGRLASIPLESDQEYTFGNVVRFECNSGFMLDGPSEIHCSANGIWSAE 201
Query: 459 LPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C E+ C +PE NG++ + KQ ++ Y CH Y + C K G W
Sbjct: 202 QPRCVEISC---QKPEIINGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-W 256
Query: 633 SAQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
PSCK A C I G+ K+++ G I++ C++ Y A
Sbjct: 257 IPSPSCKEALCP-----PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKA 307
Query: 810 QCID-GTIEIPKC 845
C D G + +P+C
Sbjct: 308 TCTDVGWVPLPRC 320
Score = 58.5 bits (140), Expect = 8e-09
Identities = 44/180 (24%), Positives = 64/180 (35%), Gaps = 6/180 (3%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPIN----TXXXXXXXXXXXXXXX 317
P + +Y G+ + C G+ + G C G +P T
Sbjct: 398 PQRKNYYQGQSVRVNCNNGHSLQNGHNIMTCTEDGWFPPPECEATDMSCESPPKVKNAIV 457
Query: 318 FAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPF 491
+ S Y P G +EC+ +FG +TC +G WT P+C E KC
Sbjct: 458 LNERSRYLP--------GWSVHYECIKPFDLFGEAEVTCL-NGTWTNPPQCGESKGKCGP 508
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
P +NG + + Y C Y L G V C G W+ P C +C +S
Sbjct: 509 PPPIDNGDITSFPLSAYAPESTVEYKCQSLYALQGNRIVRCRN-GQWTKPPKCLDACVVS 567
>ref|XP_857806.1| PREDICTED: similar to Complement factor H precursor (H factor 1)
isoform 10 [Canis familiaris].
Length = 685
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 6/253 (2%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
R C P + F + + + G ++VYTC GY G I C G W +
Sbjct: 83 RPCGHPGDASFGSFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
+L+ + +G FEC + G I C+ +G W+ E
Sbjct: 142 EVVKCLPVTEPENGRLASIPLESDQEYTFGNVVRFECNSGFMLDGPSEIHCSANGIWSAE 201
Query: 459 LPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C E+ C +PE NG++ + KQ ++ Y CH Y + C K G W
Sbjct: 202 QPRCVEISC---QKPEIINGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-W 256
Query: 633 SAQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
PSCK A C I G+ K+++ G I++ C++ Y A
Sbjct: 257 IPSPSCKEALCP-----PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKA 307
Query: 810 QCID-GTIEIPKC 845
C D G + +P+C
Sbjct: 308 TCTDVGWVPLPRC 320
Score = 60.1 bits (144), Expect = 3e-09
Identities = 48/179 (26%), Positives = 65/179 (36%), Gaps = 5/179 (2%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW---PINTXXXXXXXXXXXXXXXF 320
P K Y E++ Y C P Y G F+ L G W P+
Sbjct: 460 PKKVLYRSEEKVTYRC-PTYYHMDG-PNFVQCLNGQWIGSPVCKDMSCESPPKVKNAIVL 517
Query: 321 AKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFP 494
+ S Y P G +EC+ +FG +TC +G WT P+C E KC P
Sbjct: 518 NERSRYLP--------GWSVHYECIKPFDLFGEAEVTCL-NGTWTNPPQCGESKGKCGPP 568
Query: 495 SRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
+NG + + Y C Y L G V C G W+ P C +C +S
Sbjct: 569 PPIDNGDITSFPLSAYAPESTVEYKCQSLYALQGNRIVRCRN-GQWTKPPKCLDACVVS 626
Score = 57.0 bits (136), Expect = 2e-08
Identities = 45/121 (37%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Frame = +3
Query: 366 YGGKAV-FECLPQHAMF-GNGTITCTEHGNWTELPECKEVKCPFPSRPENG-FVNYPAKQ 536
Y G++V C H++ G+ +TCTE G W PEC +K + P G + K+
Sbjct: 404 YQGQSVRVNCNNGHSLQNGHNIMTCTEDG-WFPPPECVPLKTDCFNLPSFGNAIPIGPKK 462
Query: 537 VLYY-QDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCK-ASCKL--SVKRATVIYEGE 704
VLY ++K TY C Y +DGP V+C G W P CK SC+ VK A V+ E
Sbjct: 463 VLYRSEEKVTYRCPTYYHMDGPNFVQCLN-GQWIGSPVCKDMSCESPPKVKNAIVLNERS 521
Query: 705 R 707
R
Sbjct: 522 R 522
>ref|XP_857768.1| PREDICTED: similar to Complement factor H precursor (H factor 1)
isoform 9 [Canis familiaris].
Length = 868
Score = 69.3 bits (168), Expect = 5e-12
Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 6/253 (2%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
R C P + F + + + G ++VYTC GY G I C G W +
Sbjct: 83 RPCGHPGDASFGSFHLERGNKFEYGAKVVYTCNEGYQLIGRINFRECEPDG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
+L+ + +G FEC + G I C+ +G W+ E
Sbjct: 142 EVVKCLPVTEPENGRLASIPLESDQEYTFGNVVRFECNSGFMLDGPSEIHCSANGIWSAE 201
Query: 459 LPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C E+ C +PE NG++ + KQ ++ Y CH Y + C K G W
Sbjct: 202 QPRCVEISC---QKPEIINGYLTF-EKQTYKENERLHYKCHKGYEYSERGDTVCTKLG-W 256
Query: 633 SAQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
PSCK A C I G+ K+++ G I++ C++ Y A
Sbjct: 257 IPSPSCKEALCP-----PPNIRNGDYTPKATKYRS----GDAITYHCKSGFFSTIYGNKA 307
Query: 810 QCID-GTIEIPKC 845
C D G + +P+C
Sbjct: 308 TCTDVGWVPLPRC 320
Score = 57.0 bits (136), Expect = 2e-08
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 4/176 (2%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
K +Y + + Y C ++ +G + C + G W +L
Sbjct: 642 KETYEHNDLVEYVCNTRFLMKG-FNKIQC-IDGEWT----DLPMCIEVESTCGDIPELDY 695
Query: 336 YKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFPSRP 503
+ +NS Y G F C ++ M G +ITC G WTE P+C E KC P
Sbjct: 696 GSVVESSNSPYHHGDSVEFSCKEEYTMVGPKSITCIS-GMWTEPPQCIESKGKCGPPPPI 754
Query: 504 ENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
+NG + + Y C Y L G V C G W+ P C +C +S
Sbjct: 755 DNGDITSFPLSAYAPESTVEYKCQSLYALQGNRIVRCRN-GQWTKPPKCLDACVVS 809
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 1/148 (0%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
G+I C + G W+ P C E++C P + + + P K D + C + GP
Sbjct: 545 GSIVCGDDG-WSHKPACFEIECKIP-KIDAQLLPIPKKDKYKVGDVLKFSCRPRFIRVGP 602
Query: 600 EEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNK 779
E ++C FG P CK K ++ GE +++ K H + + C +
Sbjct: 603 ESIQCYHFGWSPVFPICKEQTKHCAAPPHLL-NGE---VKETQKETYEHNDLVEYVCNTR 658
Query: 780 EKKCSYTEDAQCIDGT-IEIPKCFKEHS 860
+ + QCIDG ++P C + S
Sbjct: 659 FLMKGFNK-IQCIDGEWTDLPMCIEVES 685
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,081,285
Number of extensions: 1070827
Number of successful extensions: 4016
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3741
Number of HSP's successfully gapped: 97
Length of query: 304
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 202
Effective length of database: 15,474,232
Effective search space: 3125794864
Effective search space used: 3125794864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776417.1| beta-2-glycoprotein 1 precursor [Bos taurus]. 456 e-128
Alignment gi|XP_002689967.1| PREDICTED: sushi, von Willebrand factor type... 74 2e-13
Alignment gi|XP_002705103.1| PREDICTED: polydom [Bos taurus]. 74 2e-13
Alignment gi|NP_001029108.1| complement factor H precursor [Bos taurus]. 73 3e-13
Alignment gi|XP_002694272.1| PREDICTED: CD46 antigen, complement regulato... 72 9e-13
Alignment gi|XP_875508.3| PREDICTED: CD46 antigen, complement regulatory ... 72 9e-13
Alignment gi|XP_001789416.1| PREDICTED: complement factor H-like [Bos tau... 69 4e-12
Alignment gi|XP_002693955.1| PREDICTED: complement factor H-related 1-lik... 66 4e-11
Alignment gi|NP_001098497.1| hypothetical protein LOC790886 [Bos taurus]. 66 5e-11
Alignment gi|NP_001229494.1| membrane cofactor protein isoform 5 [Bos tau... 66 5e-11
>ref|NP_776417.1| beta-2-glycoprotein 1 precursor [Bos taurus].
Length = 345
Score = 456 bits (1174), Expect = e-128
Identities = 217/345 (62%), Positives = 248/345 (71%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
M PP L+ L FLCH AIAGRTCPKP+ELPF+ VVPLK +Y PGE+IV++CQPGYVSRGG
Sbjct: 1 MPPPALVLLLGFLCHVAIAGRTCPKPDELPFSTVVPLKRTYEPGEQIVFSCQPGYVSRGG 60
Query: 225 IRRF------------------ICPLTGL------------------------------- 257
IRRF +CP G+
Sbjct: 61 IRRFTCPLTGLWPINTLKCMPRVCPFAGILENGTVRYTTFGYPNTISSSCHTGFYLKGAS 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W + FA LSVYKPLAGNNS YG KAVF+CLP+HAM
Sbjct: 121 SAKCTEEGKWSPDLPVCAPITCPPPPIPKFASLSVYKPLAGNNSFYGSKAVFKCLPRHAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGN T+TCTEHGN T+LPEC+EV+CPFPSRP+NGFVN+PA VLYY+D AT+GCH+TY+L
Sbjct: 181 FGNDTVTCTEHGNCTQLPECREVRCPFPSRPDNGFVNHPANPVLYYKDTATFGCHETYSL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPEEVEC+KFGNWSAQP+CKASCKLS+KRATVIYEGERV IQ+KFKNGMLHGQK+SFFC
Sbjct: 241 DGPEEVECSKFGNWSAQPNCKASCKLSIKRATVIYEGERVAIQNKFKNGMLHGQKVSFFC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKE+KCSYTEDAQCIDGTIEIPKCFKE S+LAFWKTDAS+VKPC
Sbjct: 301 KNKERKCSYTEDAQCIDGTIEIPKCFKERSSLAFWKTDASDVKPC 345
>ref|XP_002689967.1| PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin
domain containing 1, partial [Bos taurus].
Length = 2463
Score = 73.6 bits (179), Expect = 2e-13
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Frame = +3
Query: 348 AGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PECKEVKCPFPSRPENGFVNY 524
+G G + F C + + G ITC E G W+ L P C+ V C P+ PENG V+
Sbjct: 693 SGETYTVGAEVTFSCEEGYQLVGAARITCLESGEWSHLIPYCEAVSCGAPALPENGGVDG 752
Query: 525 PAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGE 704
A Y +K Y C+ YTL+G +E C G+WS P K S E
Sbjct: 753 SA---FTYGNKVIYRCNKGYTLEGEKESSCLASGSWSQSPPVCELVKCS--------SPE 801
Query: 705 RVNIQDKFKNGMLHGQKISFFCRN 776
VN + +G+ + S+ C N
Sbjct: 802 DVNHGNYILSGLTYLSTASYSCDN 825
Score = 72.0 bits (175), Expect = 7e-13
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 2/184 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C P + F V P S+ G + Y+C G+ +G C G W
Sbjct: 1273 CLPPPLISFGVPAP-SSALHFGSTVKYSCVDGFFLKGDPTTS-CQADGTWSSPLPECVPV 1330
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPE 467
+ V Y A++ C P + GN T C E+G+W + P
Sbjct: 1331 ECPQPEEILNGIIDV------QGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGKKPT 1384
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-P 644
CK ++CP P NG ++Y L+Y TY C + L+GP+ + C + G+W P
Sbjct: 1385 CKPIECPKPKEILNGKLSYTK---LHYGQTITYSCDRGFRLEGPKALTCLETGDWDVDVP 1441
Query: 645 SCKA 656
SC A
Sbjct: 1442 SCNA 1445
Score = 71.6 bits (174), Expect = 9e-13
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
+Y G E+ ++C+ GY G R C +G W L
Sbjct: 696 TYTVGAEVTFSCEEGY-QLVGAARITCLESGEWS------HLIPYCEAVSCGAPALPENG 748
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGFV 518
+ G+ YG K ++ C + + G +C G+W++ P C+ VKC P +G
Sbjct: 749 GVDGSAFTYGNKVIYRCNKGYTLEGEKESSCLASGSWSQSPPVCELVKCSSPEDVNHG-- 806
Query: 519 NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK-ASCKLSVKRATVI 692
NY L Y A+Y C + Y+L GP +EC+ G+W A P+C SC
Sbjct: 807 NYILSG-LTYLSTASYSCDNGYSLQGPSVIECSASGSWDRAPPTCHLVSC---------- 855
Query: 693 YEGERVNIQDKFKNG--MLHGQKISFFCR 773
GE I+D G G +++ CR
Sbjct: 856 --GEPPAIKDAVTTGSNFTFGNTVTYACR 882
Score = 70.1 bits (170), Expect = 3e-12
Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y +E+ YTC G++ G R +C G W NT +
Sbjct: 1741 YTFQKEVQYTCNTGFLLEGASSR-VCLADGSWSGNTPICVPVRCAPPSQVANGVMD---- 1795
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGFVN 521
G + +G + VF C +A+ G +TC +GNW ++P CK V C P + GF
Sbjct: 1796 --GLDYGFGKEVVFHCQDGYALHGAPKLTCQSNGNWDAQVPFCKPVNCSPPEDLDRGF-- 1851
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
P LY + Y C Y L G +C +WS P CK S
Sbjct: 1852 -PNGFSLYRGGQIEYQCFPGYKLHGSPSRKCLSNSSWSGSPPSCLPCKCS 1900
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 6/170 (3%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLW----PINTXXXXXXXXXXXXXXXFAKLSVYK 341
G ++Y+C GY S G C G W P+ ++ Y
Sbjct: 2210 GPSVIYSCNRGY-SLEGAPEASCTENGTWSHPVPLCKPNPCPVPFVIPENAVLSEKEFY- 2267
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENGFV 518
+ N S+ +C + G TITC WT+ +C+++ C P+ EN
Sbjct: 2268 -VDQNVSI-------KCREGFLLRGQSTITCNPDETWTQTSAKCEKISCGPPTHVENAI- 2318
Query: 519 NYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCK 665
A+ V Y Y D TY C+ Y L+G C + G W++ P C+A C+
Sbjct: 2319 ---ARGVHYQYGDVITYSCYSGYMLEGSLRSVCLENGTWTSPPVCRAVCR 2365
Score = 59.3 bits (142), Expect = 4e-09
Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 2/184 (1%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C KPE V S Y I Y C+ GY G R +C G W
Sbjct: 2132 SCGKPESPEHGFV--FGSEYNFESTITYHCETGYELEGSRER-VCQENGQWTGGVATCKK 2188
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
K V NS G ++ C +++ G +CTE+G W+ +P
Sbjct: 2189 IMCEAPLKFLNGKAEV------ENSTAGPSVIYSCNRGYSLEGAPEASCTENGTWSHPVP 2242
Query: 465 ECKEVKCPFPSR-PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ 641
CK CP P PEN ++ ++ Y + C + + L G + CN W+ Q
Sbjct: 2243 LCKPNPCPVPFVIPENAVLS---EKEFYVDQNVSIKCREGFLLRGQSTITCNPDETWT-Q 2298
Query: 642 PSCK 653
S K
Sbjct: 2299 TSAK 2302
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K C P M GN C G WT+ LP C+ + C P ENGF Y A+ +
Sbjct: 543 GSKISLFCDPGFQMVGNSVQYCLNQGQWTQPLPRCERISCGVPPPLENGF--YSAED-FH 599
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
TY C++ Y L G + C G+W+ PSC
Sbjct: 600 AGSTVTYQCNNGYYLLGDSRMFCTDNGSWNGISPSC 635
Score = 57.8 bits (138), Expect = 1e-08
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVL 542
+G + C+ + G+ T +C G W+ LPEC V+CP P NG ++ Q L
Sbjct: 1292 FGSTVKYSCVDGFFLKGDPTTSCQADGTWSSPLPECVPVECPQPEEILNGIIDV---QGL 1348
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKASCKLSVKRATVIYEGERVNIQ 719
Y A Y C + L G C + G+W +P+CK + + I G
Sbjct: 1349 AYLSTALYTCKPGFELVGNTTTLCGENGHWLGKKPTCK---PIECPKPKEILNG------ 1399
Query: 720 DKFKNGMLH-GQKISFFCRNKEKKCSYTEDAQCI---DGTIEIPKCFKEH 857
K LH GQ I++ C ++ + + C+ D +++P C H
Sbjct: 1400 -KLSYTKLHYGQTITYSC-DRGFRLEGPKALTCLETGDWDVDVPSCNAIH 1447
Score = 55.5 bits (132), Expect = 6e-08
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVL 542
Y + C P + + GN + C E G W P C ++C P PENGF++
Sbjct: 1569 YNTLVSYSCNPGYELLGNAVLICQEDGTWNGSAPSCISMECDLPVAPENGFLHVTETTT- 1627
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKA-SC 662
Y C +TL G + C + WS A P C+A SC
Sbjct: 1628 --GSAVQYSCKPGHTLVGSDLRLCLRNREWSGASPRCEAISC 1667
Score = 55.1 bits (131), Expect = 8e-08
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 1/181 (0%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP+PEE+ ++ +Y +YTC+PG+ G +C G W
Sbjct: 1332 CPQPEEILNGIIDVQGLAYL--STALYTCKPGFELVGNTTT-LCGENGHWLGKKPTCKPI 1388
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPE 467
KLS K YG + C + G +TC E G+W ++P
Sbjct: 1389 ECPKPKEILNGKLSYTK------LHYGQTITYSCDRGFRLEGPKALTCLETGDWDVDVPS 1442
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPS 647
C + C P ENGFV Y Y C + + G C + G S+ P+
Sbjct: 1443 CNAIHCDPPQPIENGFVEGADYS---YGAMIIYSCFPGFQVAGHAMQTCEESGWSSSIPT 1499
Query: 648 C 650
C
Sbjct: 1500 C 1500
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 6/188 (3%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+CPKP + + S+Y+ + Y C GYV G RR C W +
Sbjct: 1666 SCPKPNPVTDGSI--RGSNYSYLSVLYYECNSGYVLNGSSRR-TCQEDKTWDGDEPVCIP 1722
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELP 464
S + G + + + C + G + C G+W+ P
Sbjct: 1723 VDCGSPPS------SANGQVKGEEYTFQKEVQYTCNTGFLLEGASSRVCLADGSWSGNTP 1776
Query: 465 ECKEVKCPFPSRPENGFVNYP----AKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
C V+C PS+ NG ++ K+V+++ C D Y L G ++ C GNW
Sbjct: 1777 ICVPVRCAPPSQVANGVMDGLDYGFGKEVVFH-------CQDGYALHGAPKLTCQSNGNW 1829
Query: 633 SAQ-PSCK 653
AQ P CK
Sbjct: 1830 DAQVPFCK 1837
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 6/165 (3%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S++ G +++Y C GY G + C +G W + K S
Sbjct: 753 SAFTYGNKVIYRCNKGYTLEGE-KESSCLASGSWSQSPPVCE-----------LVKCSSP 800
Query: 339 KPLAGNNSLYGG-----KAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSR 500
+ + N + G A + C +++ G I C+ G+W P C V C P
Sbjct: 801 EDVNHGNYILSGLTYLSTASYSCDNGYSLQGPSVIECSASGSWDRAPPTCHLVSCGEPPA 860
Query: 501 PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
++ + + TY C + YTL GP+ +EC G WS
Sbjct: 861 IKDAVTT---GSNFTFGNTVTYACREGYTLAGPDTIECLASGKWS 902
Score = 52.4 bits (124), Expect = 5e-07
Identities = 51/216 (23%), Positives = 75/216 (34%), Gaps = 3/216 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C PE+L P S G +I Y C PGY G R C W +
Sbjct: 1841 CSPPEDLDRGF--PNGFSLYRGGQIEYQCFPGYKLHGSPSRK-CLSNSSWSGSPPSCLPC 1897
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPE 467
A + G + G A C + G ITC G W ++ P
Sbjct: 1898 KCSPPTIQSGA-------VNGTDFSCGKAAQIRCFKGFQLLGLSEITCEADGQWSSDFPR 1950
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQP 644
C+ C P N F+ ++ ++ TY C Y + G ++ C + G WS P
Sbjct: 1951 CEHPSCGSPPTIPNAFI---VERGSLEENVITYTCKPGYVIQGSSDLICTEKGTWSQPYP 2007
Query: 645 SCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
C+ SC + + GE + + + L G
Sbjct: 2008 VCEPLSCGPPPSVSNAVATGEAHTYESQVRLRCLEG 2043
Score = 50.8 bits (120), Expect = 2e-06
Identities = 51/194 (26%), Positives = 72/194 (37%), Gaps = 9/194 (4%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C P +P A +V S I YTC+PGYV +G IC G W
Sbjct: 1955 SCGSPPTIPNAFIVERGS--LEENVITYTCKPGYVIQGS-SDLICTEKGTW--------- 2002
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKA-------VFECLPQHAMFGN-GTITCTEH 443
LS P + +N++ G+A CL + M + T TC +
Sbjct: 2003 ----SQPYPVCEPLSCGPPPSVSNAVATGEAHTYESQVRLRCLEGYVMDTDIDTFTCQKD 2058
Query: 444 GNW-TELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
G+W E C KCP P+ + V+ V + + C + YT +G C
Sbjct: 2059 GHWFPETISCSPKKCPLPTNVTHILVHGDDFSV---NKQVSVSCVEGYTYEGVNTSTCQL 2115
Query: 621 FGNWSAQPSCKASC 662
G W P SC
Sbjct: 2116 DGTWE-PPFSDESC 2128
Score = 50.1 bits (118), Expect = 3e-06
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 9/192 (4%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXX 284
+ CP P + +V ++ +++ +C GY G + C L G W
Sbjct: 2071 KKCPLPTNVTHILVHG--DDFSVNKQVSVSCVEGYTYEG-VNTSTCQLDGTWE------- 2120
Query: 285 XXXXXXXXXXXFAKLSVYKPLAGNNS-LYGGKAVFE------CLPQHAMFGNGTITCTEH 443
+ +S KP + + ++G + FE C + + G+ C E+
Sbjct: 2121 ----PPFSDESCSPISCGKPESPEHGFVFGSEYNFESTITYHCETGYELEGSRERVCQEN 2176
Query: 444 GNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
G WT + CK++ C P + NG Y C+ Y+L+G E C +
Sbjct: 2177 GQWTGGVATCKKIMCEAPLKFLNGKAEVENSTA---GPSVIYSCNRGYSLEGAPEASCTE 2233
Query: 621 FGNWS-AQPSCK 653
G WS P CK
Sbjct: 2234 NGTWSHPVPLCK 2245
>ref|XP_002705103.1| PREDICTED: polydom [Bos taurus].
Length = 3396
Score = 73.6 bits (179), Expect = 2e-13
Identities = 46/144 (31%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Frame = +3
Query: 348 AGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PECKEVKCPFPSRPENGFVNY 524
+G G + F C + + G ITC E G W+ L P C+ V C P+ PENG V+
Sbjct: 1626 SGETYTVGAEVTFSCEEGYQLVGAARITCLESGEWSHLIPYCEAVSCGAPALPENGGVDG 1685
Query: 525 PAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGE 704
A Y +K Y C+ YTL+G +E C G+WS P K S E
Sbjct: 1686 SA---FTYGNKVIYRCNKGYTLEGEKESSCLASGSWSQSPPVCELVKCS--------SPE 1734
Query: 705 RVNIQDKFKNGMLHGQKISFFCRN 776
VN + +G+ + S+ C N
Sbjct: 1735 DVNHGNYILSGLTYLSTASYSCDN 1758
Score = 72.0 bits (175), Expect = 7e-13
Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 2/184 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C P + F V P S+ G + Y+C G+ +G C G W
Sbjct: 2206 CLPPPLISFGVPAP-SSALHFGSTVKYSCVDGFFLKGDPTTS-CQADGTWSSPLPECVPV 2263
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPE 467
+ V Y A++ C P + GN T C E+G+W + P
Sbjct: 2264 ECPQPEEILNGIIDV------QGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGKKPT 2317
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-P 644
CK ++CP P NG ++Y L+Y TY C + L+GP+ + C + G+W P
Sbjct: 2318 CKPIECPKPKEILNGKLSYTK---LHYGQTITYSCDRGFRLEGPKALTCLETGDWDVDVP 2374
Query: 645 SCKA 656
SC A
Sbjct: 2375 SCNA 2378
Score = 71.6 bits (174), Expect = 9e-13
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 5/209 (2%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
+Y G E+ ++C+ GY G R C +G W L
Sbjct: 1629 TYTVGAEVTFSCEEGY-QLVGAARITCLESGEWS------HLIPYCEAVSCGAPALPENG 1681
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGFV 518
+ G+ YG K ++ C + + G +C G+W++ P C+ VKC P +G
Sbjct: 1682 GVDGSAFTYGNKVIYRCNKGYTLEGEKESSCLASGSWSQSPPVCELVKCSSPEDVNHG-- 1739
Query: 519 NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK-ASCKLSVKRATVI 692
NY L Y A+Y C + Y+L GP +EC+ G+W A P+C SC
Sbjct: 1740 NYILSG-LTYLSTASYSCDNGYSLQGPSVIECSASGSWDRAPPTCHLVSC---------- 1788
Query: 693 YEGERVNIQDKFKNG--MLHGQKISFFCR 773
GE I+D G G +++ CR
Sbjct: 1789 --GEPPAIKDAVTTGSNFTFGNTVTYACR 1815
Score = 70.1 bits (170), Expect = 3e-12
Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y +E+ YTC G++ G R +C G W NT +
Sbjct: 2674 YTFQKEVQYTCNTGFLLEGASSR-VCLADGSWSGNTPICVPVRCAPPSQVANGVMD---- 2728
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGFVN 521
G + +G + VF C +A+ G +TC +GNW ++P CK V C P + GF
Sbjct: 2729 --GLDYGFGKEVVFHCQDGYALHGAPKLTCQSNGNWDAQVPFCKPVNCSPPEDLDRGF-- 2784
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
P LY + Y C Y L G +C +WS P CK S
Sbjct: 2785 -PNGFSLYRGGQIEYQCFPGYKLHGSPSRKCLSNSSWSGSPPSCLPCKCS 2833
Score = 60.1 bits (144), Expect = 3e-09
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 6/170 (3%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLW----PINTXXXXXXXXXXXXXXXFAKLSVYK 341
G ++Y+C GY S G C G W P+ ++ Y
Sbjct: 3143 GPSVIYSCNRGY-SLEGAPEASCTENGTWSHPVPLCKPNPCPVPFVIPENAVLSEKEFY- 3200
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENGFV 518
+ N S+ +C + G TITC WT+ +C+++ C P+ EN
Sbjct: 3201 -VDQNVSI-------KCREGFLLRGQSTITCNPDETWTQTSAKCEKISCGPPTHVENAI- 3251
Query: 519 NYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCK 665
A+ V Y Y D TY C+ Y L+G C + G W++ P C+A C+
Sbjct: 3252 ---ARGVHYQYGDVITYSCYSGYMLEGSLRSVCLENGTWTSPPVCRAVCR 3298
Score = 59.3 bits (142), Expect = 4e-09
Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 2/184 (1%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C KPE V S Y I Y C+ GY G R +C G W
Sbjct: 3065 SCGKPESPEHGFV--FGSEYNFESTITYHCETGYELEGSRER-VCQENGQWTGGVATCKK 3121
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
K V NS G ++ C +++ G +CTE+G W+ +P
Sbjct: 3122 IMCEAPLKFLNGKAEV------ENSTAGPSVIYSCNRGYSLEGAPEASCTENGTWSHPVP 3175
Query: 465 ECKEVKCPFPSR-PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ 641
CK CP P PEN ++ ++ Y + C + + L G + CN W+ Q
Sbjct: 3176 LCKPNPCPVPFVIPENAVLS---EKEFYVDQNVSIKCREGFLLRGQSTITCNPDETWT-Q 3231
Query: 642 PSCK 653
S K
Sbjct: 3232 TSAK 3235
Score = 58.5 bits (140), Expect = 8e-09
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K C P M GN C G WT+ LP C+ + C P ENGF Y A+ +
Sbjct: 1476 GSKISLFCDPGFQMVGNSVQYCLNQGQWTQPLPRCERISCGVPPPLENGF--YSAED-FH 1532
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
TY C++ Y L G + C G+W+ PSC
Sbjct: 1533 AGSTVTYQCNNGYYLLGDSRMFCTDNGSWNGISPSC 1568
Score = 57.8 bits (138), Expect = 1e-08
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVL 542
+G + C+ + G+ T +C G W+ LPEC V+CP P NG ++ Q L
Sbjct: 2225 FGSTVKYSCVDGFFLKGDPTTSCQADGTWSSPLPECVPVECPQPEEILNGIIDV---QGL 2281
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKASCKLSVKRATVIYEGERVNIQ 719
Y A Y C + L G C + G+W +P+CK + + I G
Sbjct: 2282 AYLSTALYTCKPGFELVGNTTTLCGENGHWLGKKPTCK---PIECPKPKEILNG------ 2332
Query: 720 DKFKNGMLH-GQKISFFCRNKEKKCSYTEDAQCI---DGTIEIPKCFKEH 857
K LH GQ I++ C ++ + + C+ D +++P C H
Sbjct: 2333 -KLSYTKLHYGQTITYSC-DRGFRLEGPKALTCLETGDWDVDVPSCNAIH 2380
Score = 55.5 bits (132), Expect = 6e-08
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVL 542
Y + C P + + GN + C E G W P C ++C P PENGF++
Sbjct: 2502 YNTLVSYSCNPGYELLGNAVLICQEDGTWNGSAPSCISMECDLPVAPENGFLHVTETTT- 2560
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKA-SC 662
Y C +TL G + C + WS A P C+A SC
Sbjct: 2561 --GSAVQYSCKPGHTLVGSDLRLCLRNREWSGASPRCEAISC 2600
Score = 55.1 bits (131), Expect = 8e-08
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 1/181 (0%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP+PEE+ ++ +Y +YTC+PG+ G +C G W
Sbjct: 2265 CPQPEEILNGIIDVQGLAYL--STALYTCKPGFELVGNTTT-LCGENGHWLGKKPTCKPI 2321
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPE 467
KLS K YG + C + G +TC E G+W ++P
Sbjct: 2322 ECPKPKEILNGKLSYTK------LHYGQTITYSCDRGFRLEGPKALTCLETGDWDVDVPS 2375
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPS 647
C + C P ENGFV Y Y C + + G C + G S+ P+
Sbjct: 2376 CNAIHCDPPQPIENGFVEGADYS---YGAMIIYSCFPGFQVAGHAMQTCEESGWSSSIPT 2432
Query: 648 C 650
C
Sbjct: 2433 C 2433
Score = 54.7 bits (130), Expect = 1e-07
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 6/188 (3%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+CPKP + + S+Y+ + Y C GYV G RR C W +
Sbjct: 2599 SCPKPNPVTDGSI--RGSNYSYLSVLYYECNSGYVLNGSSRR-TCQEDKTWDGDEPVCIP 2655
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELP 464
S + G + + + C + G + C G+W+ P
Sbjct: 2656 VDCGSPPS------SANGQVKGEEYTFQKEVQYTCNTGFLLEGASSRVCLADGSWSGNTP 2709
Query: 465 ECKEVKCPFPSRPENGFVNYP----AKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
C V+C PS+ NG ++ K+V+++ C D Y L G ++ C GNW
Sbjct: 2710 ICVPVRCAPPSQVANGVMDGLDYGFGKEVVFH-------CQDGYALHGAPKLTCQSNGNW 2762
Query: 633 SAQ-PSCK 653
AQ P CK
Sbjct: 2763 DAQVPFCK 2770
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 6/165 (3%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S++ G +++Y C GY G + C +G W + K S
Sbjct: 1686 SAFTYGNKVIYRCNKGYTLEGE-KESSCLASGSWSQSPPVCE-----------LVKCSSP 1733
Query: 339 KPLAGNNSLYGG-----KAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSR 500
+ + N + G A + C +++ G I C+ G+W P C V C P
Sbjct: 1734 EDVNHGNYILSGLTYLSTASYSCDNGYSLQGPSVIECSASGSWDRAPPTCHLVSCGEPPA 1793
Query: 501 PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
++ + + TY C + YTL GP+ +EC G WS
Sbjct: 1794 IKDAVTT---GSNFTFGNTVTYACREGYTLAGPDTIECLASGKWS 1835
Score = 52.4 bits (124), Expect = 5e-07
Identities = 51/216 (23%), Positives = 75/216 (34%), Gaps = 3/216 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C PE+L P S G +I Y C PGY G R C W +
Sbjct: 2774 CSPPEDLDRGF--PNGFSLYRGGQIEYQCFPGYKLHGSPSRK-CLSNSSWSGSPPSCLPC 2830
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPE 467
A + G + G A C + G ITC G W ++ P
Sbjct: 2831 KCSPPTIQSGA-------VNGTDFSCGKAAQIRCFKGFQLLGLSEITCEADGQWSSDFPR 2883
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQP 644
C+ C P N F+ ++ ++ TY C Y + G ++ C + G WS P
Sbjct: 2884 CEHPSCGSPPTIPNAFI---VERGSLEENVITYTCKPGYVIQGSSDLICTEKGTWSQPYP 2940
Query: 645 SCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
C+ SC + + GE + + + L G
Sbjct: 2941 VCEPLSCGPPPSVSNAVATGEAHTYESQVRLRCLEG 2976
Score = 50.1 bits (118), Expect = 3e-06
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 9/192 (4%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXX 284
+ CP P + +V ++ +++ +C GY G + C L G W
Sbjct: 3004 KKCPLPTNVTHILVHG--DDFSVNKQVSVSCVEGYTYEG-VNTSTCQLDGTWE------- 3053
Query: 285 XXXXXXXXXXXFAKLSVYKPLAGNNS-LYGGKAVFE------CLPQHAMFGNGTITCTEH 443
+ +S KP + + ++G + FE C + + G+ C E+
Sbjct: 3054 ----PPFSDESCSPISCGKPESPEHGFVFGSEYNFESTITYHCETGYELEGSRERVCQEN 3109
Query: 444 GNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
G WT + CK++ C P + NG Y C+ Y+L+G E C +
Sbjct: 3110 GQWTGGVATCKKIMCEAPLKFLNGKAEVENSTA---GPSVIYSCNRGYSLEGAPEASCTE 3166
Query: 621 FGNWS-AQPSCK 653
G WS P CK
Sbjct: 3167 NGTWSHPVPLCK 3178
Score = 49.3 bits (116), Expect = 5e-06
Identities = 51/194 (26%), Positives = 71/194 (36%), Gaps = 9/194 (4%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C P +P A +V S I YTC+PGYV +G IC G W
Sbjct: 2888 SCGSPPTIPNAFIVERGS--LEENVITYTCKPGYVIQGS-SDLICTEKGTW--------- 2935
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKA-------VFECLPQHAM-FGNGTITCTEH 443
LS P + +N++ G+A CL + M T TC +
Sbjct: 2936 ----SQPYPVCEPLSCGPPPSVSNAVATGEAHTYESQVRLRCLEGYVMDTVIDTFTCQKD 2991
Query: 444 GNW-TELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
G+W E C KCP P+ + V+ V + + C + YT +G C
Sbjct: 2992 GHWFPETISCSPKKCPLPTNVTHILVHGDDFSV---NKQVSVSCVEGYTYEGVNTSTCQL 3048
Query: 621 FGNWSAQPSCKASC 662
G W P SC
Sbjct: 3049 DGTWE-PPFSDESC 3061
>ref|NP_001029108.1| complement factor H precursor [Bos taurus].
Length = 1236
Score = 73.2 bits (178), Expect = 3e-13
Identities = 64/245 (26%), Positives = 98/245 (40%), Gaps = 16/245 (6%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+ +Y G + Y C+PGY + G I +C G W ++
Sbjct: 39 EQTYQEGTQATYKCRPGYRTLGSIV-MMCR-GGKW-VSLHPSRICRKKPCAHPGDTPFGS 95
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENG 512
+ G YG K V+ C + M G + WT ++P C+ VKC + PENG
Sbjct: 96 FHLAEGTQFEYGAKVVYTCDEGYQMVGEMNFRECDTNGWTNDIPICEVVKCLPVTEPENG 155
Query: 513 FVNYPA---KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSC-KASCKLSVK 677
+ A Q Y + C+ Y LDGP+++ C+ G WSA+ P C + CK
Sbjct: 156 KIFSDALEPDQEYTYGQVVQFECNSGYMLDGPKQIHCSAGGVWSAETPKCVEIFCK---- 211
Query: 678 RATVIYEGERV----------NIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT 827
VI G+ V +Q + G +GQ+ C K +T CI+ T
Sbjct: 212 -TPVILNGQAVLPKATYKANERVQYRCAAGFEYGQRGDTIC----TKSGWTPAPTCIEIT 266
Query: 828 IEIPK 842
+ P+
Sbjct: 267 CDPPR 271
Score = 67.8 bits (164), Expect = 1e-11
Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 17/278 (6%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWP-----I 266
G C P + VV K Y GEE+ Y C G+ + G I L G W I
Sbjct: 936 GLPCGLPPYVQNGVVSHKKDRYQYGEEVTYDCDEGFGTDGPAS--IRCLGGEWSRPQDCI 993
Query: 267 NTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHG 446
+T K Y+ G + F+CL + + G+ TI C +
Sbjct: 994 STNCVNLPTFEDAVLTDREK-DFYRS--------GEQVAFKCLSYYQLDGSNTIQCIK-S 1043
Query: 447 NWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFG 626
W P C++V C P + EN + + K +++A Y C Y L G EV C G
Sbjct: 1044 KWIGRPACRDVSCGNPPQVENAII-HNQKSKYQSEERARYECIGNYDLFGEMEVVCLN-G 1101
Query: 627 NWSAQPSCKASCKLSVKRATVIYEGERVN-IQDKFKNGM-----------LHGQKISFFC 770
W+ P CK S + I G+ + +Q + GM L G K + C
Sbjct: 1102 TWTEPPQCKDS-QGKCGPPPPIDNGDITSLLQSVYPPGMIVEYRCQAYYELRGNK-NVVC 1159
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTD 884
RN E +++ +C++ + + ++H WK D
Sbjct: 1160 RNGE----WSQLPKCLEACVISEETMRKHHIQLRWKHD 1193
Score = 61.6 bits (148), Expect = 9e-10
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 4/249 (1%)
Frame = +3
Query: 90 AAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG--IRRFICPLTGLWP 263
AA R C PE P+ P K +Y G+ + ++C G + G ++ + + P
Sbjct: 560 AACYERECSIPEMDPYLNAYPRKETYKVGDVLKFSCSQGRIMVGADSVQCYHFGWSPKLP 619
Query: 264 INTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEH 443
+ ++K +N + + C P+ M G+ I C +
Sbjct: 620 TCKVKKVKSCALPPELPNGKRKEIHKEEYAHNEV----VEYACNPRFLMKGSHKIQCVD- 674
Query: 444 GNWTELPECKEVKCPFPSRPE--NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECN 617
G WT LP C E + + P+ +G V P+ ++ D + C + +T+ GP + C
Sbjct: 675 GEWTALPVCIEEERTCGNIPDLDHGDVK-PSVPPYHHGDSVEFSCREAFTMIGPRFITCI 733
Query: 618 KFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSY 797
G W+ P C A+ +L + + ++ E + K H S+ CR K S
Sbjct: 734 S-GEWTQPPQCIATDELRKCKGSTLFPPEG---RQAHKIEYDHNTNKSYQCRGK----SE 785
Query: 798 TEDAQCIDG 824
+ + CI+G
Sbjct: 786 HKHSICING 794
Score = 60.8 bits (146), Expect = 2e-09
Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 7/236 (2%)
Frame = +3
Query: 84 CHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWP 263
C+ + CP P ++P A + +Y GE+I C+ Y+ + +C G W
Sbjct: 802 CNEEAKIQLCPPPPQVPNACDMTTTVNYQDGEKISILCKENYLIQDA-EEIVCK-DGRWQ 859
Query: 264 INTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLY-------GGKAVFECLPQHAMFGNG 422
+S ++ G K + C + N
Sbjct: 860 SIPRCIEKIGCSQPPQIDHGTISSSSSAEERREIHEQRLYAHGTKLSYTCEEGFEISENN 919
Query: 423 TITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPE 602
I C G W+ P+C + C P +NG V++ K Y ++ TY C + + DGP
Sbjct: 920 VIIC-HMGKWSSPPQCVGLPCGLPPYVQNGVVSH-KKDRYQYGEEVTYDCDEGFGTDGPA 977
Query: 603 EVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
+ C G WS C ++ +++ E + D+ K+ G++++F C
Sbjct: 978 SIRC-LGGEWSRPQDCISTNCVNLPTF------EDAVLTDREKDFYRSGEQVAFKC 1026
Score = 53.1 bits (126), Expect = 3e-07
Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVN-YPAKQVLYYQDKATYGCHDTYTLDG 596
G+I C + G W++ C E +C P + ++N YP K+ D + C + G
Sbjct: 547 GSIVCGQDG-WSDKAACYERECSIPEM--DPYLNAYPRKETYKVGDVLKFSCSQGRIMVG 603
Query: 597 PEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCR 773
+ V+C FG WS + P+CK S + G+R I K H + + + C
Sbjct: 604 ADSVQCYHFG-WSPKLPTCKVKKVKSCALPPELPNGKRKEIH---KEEYAHNEVVEYAC- 658
Query: 774 NKEKKCSYTEDAQCIDGT-IEIPKCFKEHSALA-FWKTDASNVKP 902
N + QC+DG +P C +E D +VKP
Sbjct: 659 NPRFLMKGSHKIQCVDGEWTALPVCIEEERTCGNIPDLDHGDVKP 703
Score = 48.9 bits (115), Expect = 6e-06
Identities = 56/250 (22%), Positives = 88/250 (35%), Gaps = 3/250 (1%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
+ C P + PF + + + G ++VYTC GY G + C G W +
Sbjct: 83 KPCAHPGDTPFGSFHLAEGTQFEYGAKVVYTCDEGYQMVGEMNFRECDTNG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
K+ YG FEC + + G I C+ G W+ E
Sbjct: 142 EVVKCLPVTEPENGKIFSDALEPDQEYTYGQVVQFECNSGYMLDGPKQIHCSAGGVWSAE 201
Query: 459 LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA 638
P+C E+ C P NG P K ++ Y C + + C K G W+
Sbjct: 202 TPKCVEIFCKTPV-ILNGQAVLP-KATYKANERVQYRCAAGFEYGQRGDTICTKSG-WTP 258
Query: 639 QPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCI 818
P+C + +Y E + + KI++ C+ DA C
Sbjct: 259 APTCIEITCDPPRIPNGVYRPELSKYRGQ--------DKITYECKKGFFPEIRGTDATCT 310
Query: 819 -DGTIEIPKC 845
DG + +P+C
Sbjct: 311 RDGWVPVPRC 320
>ref|XP_002694272.1| PREDICTED: CD46 antigen, complement regulatory protein-like [Bos
taurus].
Length = 301
Score = 71.6 bits (174), Expect = 9e-13
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 10/208 (4%)
Frame = +3
Query: 93 AIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTG---LWP 263
A G++CP + V + S G + +C PG+ G + C ++G W
Sbjct: 75 ACVGKSCPNLGDPANGQVNFVNGSVLFGSQAHVSCNPGFYLIGA-KVIYCEISGDNVNWS 133
Query: 264 INTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQH-----AMFGNGTI 428
N + + YK + Y ++ C P H ++ G T+
Sbjct: 134 DNLPICEIILCATPGNITNGRFTQYKEVYR----YSEVVIYRCDPSHGPDEYSLIGETTL 189
Query: 429 TCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEE 605
C +H W+ + PECK VKC +P ENG + + YY + + CHD + L G
Sbjct: 190 ICVDHNRWSSDPPECKVVKCDYPI-VENGAIVSGFRGKYYYNMQVVFQCHDGFHLHGSST 248
Query: 606 VECNKFGNWSAQ-PSCKASCKLSVKRAT 686
+ C G W + P C A ++ A+
Sbjct: 249 IVCGANGTWEPKLPKCSAKEAIATTTAS 276
>ref|XP_875508.3| PREDICTED: CD46 antigen, complement regulatory protein-like [Bos
taurus].
Length = 301
Score = 71.6 bits (174), Expect = 9e-13
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 10/208 (4%)
Frame = +3
Query: 93 AIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTG---LWP 263
A G++CP + V + S G + +C PG+ G + C ++G W
Sbjct: 75 ACVGKSCPNLGDPANGQVNFVNGSVLFGSQAHVSCNPGFYLIGA-KVIYCEISGDNVNWS 133
Query: 264 INTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQH-----AMFGNGTI 428
N + + YK + Y ++ C P H ++ G T+
Sbjct: 134 DNLPICEIILCATPGNITNGRFTQYKEVYR----YSEVVIYRCDPSHGPDEYSLIGETTL 189
Query: 429 TCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEE 605
C +H W+ + PECK VKC +P ENG + + YY + + CHD + L G
Sbjct: 190 ICVDHNRWSSDPPECKVVKCDYPI-VENGAIVSGFRGKYYYNMQVVFQCHDGFHLHGSST 248
Query: 606 VECNKFGNWSAQ-PSCKASCKLSVKRAT 686
+ C G W + P C A ++ A+
Sbjct: 249 IVCGANGTWEPKLPKCSAKEAIATTTAS 276
>ref|XP_001789416.1| PREDICTED: complement factor H-like [Bos taurus].
Length = 577
Score = 69.3 bits (168), Expect = 4e-12
Identities = 58/217 (26%), Positives = 88/217 (40%), Gaps = 12/217 (5%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+ +Y G + Y C+PGY + G I +C G W ++
Sbjct: 39 EQTYQEGTQATYKCRPGYRTLGSIV-MMCR-GGKW-VSLHPSRICRKKPCAHPGDTPFGS 95
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENG 512
+ G YG K V+ C + M G + WT ++P C+ VKC + PENG
Sbjct: 96 FHLAEGTQFEYGAKVVYTCDEGYQMVGEMNFRECDTNGWTNDIPICEVVKCLPVTEPENG 155
Query: 513 FVNYPA---KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSC--KASCKL-- 668
+ A Q Y + C+ Y LDGP+++ C+ G WSA+ P C K C
Sbjct: 156 KIFSDALEPDQEYTYGQVVQFECNSGYMLDGPKQIHCSAGGVWSAETPKCVEKIGCSQPP 215
Query: 669 SVKRATVIYEG---ERVNIQDKFKNGMLHGQKISFFC 770
+ T+ ER I + + HG K+S+ C
Sbjct: 216 QIDHGTISSSSSAEERREIHE--QRLYAHGTKLSYTC 250
Score = 66.6 bits (161), Expect = 3e-11
Identities = 70/277 (25%), Positives = 107/277 (38%), Gaps = 16/277 (5%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWP-----I 266
G C P + VV K Y GEE+ Y C G+ + G I L G W I
Sbjct: 277 GLPCGLPPYVQNGVVSHKKDRYQYGEEVTYDCDEGFGTDGPAS--IRCLGGEWSRPQDCI 334
Query: 267 NTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHG 446
+T K Y+ G + F+CL + + G+ TI C +
Sbjct: 335 STNCVNLPTFEDAVLTDREK-DFYRS--------GEQVAFKCLSYYQLDGSNTIQCIK-S 384
Query: 447 NWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFG 626
W P C++V C P + EN + + K +++A Y C Y L G EV C G
Sbjct: 385 KWIGRPACRDVSCGNPPQVENAII-HNQKSKYQSEERARYECIGNYDLFGEMEVVCLN-G 442
Query: 627 NWSAQPSCKASCKLSVKRATVIYEGERVN-IQDKFKNGMLHGQKISFFCR-------NKE 782
W+ P CK S + I G+ + +Q + +GM+ + + C+ NK
Sbjct: 443 TWTEPPQCKDS-QGKCGPPPPIDNGDITSLLQSVYPSGMI----VEYRCQAYYELRGNKN 497
Query: 783 KKCSYTEDAQ---CIDGTIEIPKCFKEHSALAFWKTD 884
C E +Q C++ + ++H WK D
Sbjct: 498 VVCQNGEWSQLPKCLEACTVSEETMRKHYIQLRWKHD 534
Score = 65.5 bits (158), Expect = 6e-11
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Frame = +3
Query: 375 KAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFPSRPENGFVNYPAKQVLYY 548
+A +EC+ + +FG + C +G WTE P+CK+ KC P +NG + + V
Sbjct: 420 RARYECIGNYDLFGEMEVVCL-NGTWTEPPQCKDSQGKCGPPPPIDNGDITSLLQSVYPS 478
Query: 549 QDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKF 728
Y C Y L G + V C G WS P C +C +S + Y IQ ++
Sbjct: 479 GMIVEYRCQAYYELRGNKNVVCQN-GEWSQLPKCLEACTVSEETMRKHY------IQLRW 531
Query: 729 KNGMLHGQK----ISFFCRNKEKKCS--YTEDAQCIDGTIEIPKC 845
K+ K I F C+ + + +T A C +G +E P+C
Sbjct: 532 KHDKKIYSKTEDTIEFMCQYGYRPLTPKHTFRATCREGKVEYPRC 576
Score = 54.7 bits (130), Expect = 1e-07
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 8/210 (3%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXX-FAKLSVYK 341
Y G+ + + C GY+ G ++ C G+W T +S
Sbjct: 168 YTYGQVVQFECNSGYMLDGP-KQIHCSAGGVWSAETPKCVEKIGCSQPPQIDHGTISSSS 226
Query: 342 PLAGNNSLY-------GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSR 500
++ G K + C + N I C G W+ P+C + C P
Sbjct: 227 SAEERREIHEQRLYAHGTKLSYTCEEGFEISENNVIIC-HMGKWSSPPQCVGLPCGLPPY 285
Query: 501 PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKR 680
+NG V++ K Y ++ TY C + + DGP + C G WS C ++ +++
Sbjct: 286 VQNGVVSH-KKDRYQYGEEVTYDCDEGFGTDGPASIRC-LGGEWSRPQDCISTNCVNLPT 343
Query: 681 ATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
E + D+ K+ G++++F C
Sbjct: 344 F------EDAVLTDREKDFYRSGEQVAFKC 367
Score = 50.4 bits (119), Expect = 2e-06
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 13/195 (6%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
+ C P + PF + + + G ++VYTC GY G + C G W +
Sbjct: 83 KPCAHPGDTPFGSFHLAEGTQFEYGAKVVYTCDEGYQMVGEMNFRECDTNG-WTNDIPIC 141
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-E 458
K+ YG FEC + + G I C+ G W+ E
Sbjct: 142 EVVKCLPVTEPENGKIFSDALEPDQEYTYGQVVQFECNSGYMLDGPKQIHCSAGGVWSAE 201
Query: 459 LPECKE-VKCPFPSRPENGFVNYPA---------KQVLY-YQDKATYGCHDTYTLDGPEE 605
P+C E + C P + ++G ++ + +Q LY + K +Y C + + +
Sbjct: 202 TPKCVEKIGCSQPPQIDHGTISSSSSAEERREIHEQRLYAHGTKLSYTCEEGFEISENNV 261
Query: 606 VECNKFGNWSAQPSC 650
+ C+ G WS+ P C
Sbjct: 262 IICH-MGKWSSPPQC 275
>ref|XP_002693955.1| PREDICTED: complement factor H-related 1-like isoform 1 [Bos
taurus].
Length = 516
Score = 66.2 bits (160), Expect = 4e-11
Identities = 70/275 (25%), Positives = 107/275 (38%), Gaps = 14/275 (5%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
G C P + VV K SY GEE+ Y C G+ + G I L G W +
Sbjct: 212 GIPCGIPPYILNDVVSHNKDSYQYGEEVTYKCNEGFGTDGPAS--IRCLGGEWSCSQDCI 269
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL 461
+ K + G + F+CL + + G TI C + W
Sbjct: 270 STNCVNLPTFEDAVLIDREKDFYRS----GEQVAFKCLSYYQLDGPNTIQCIK-SKWIGR 324
Query: 462 PECKEVKCPFPSRPENGFVNYPAKQVLYYQ--DKATYGCHDTYTLDGPEEVECNKFGNWS 635
P C++V C P + EN ++ Q YQ ++A Y C Y L G EV C G W+
Sbjct: 325 PACRDVSCVNPPQVENAIIH---NQKSRYQSGERARYECIGNYDLFGETEVICLN-GIWT 380
Query: 636 AQPSCKASCKLSVKRATVIYEGERVN-IQDKFKNGM-----------LHGQKISFFCRNK 779
P CK S + I G+ + +Q + GM L G + + C+N
Sbjct: 381 EPPQCKDS-QGKCGPPPPIDNGDITSLLQSVYPPGMSVEYQCQAYYELQGNR-NVVCQNG 438
Query: 780 EKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTD 884
E ++E +C++ + + ++H WK D
Sbjct: 439 E----WSEPPKCLEACVISEETMRKHHIELRWKPD 469
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/135 (24%), Positives = 59/135 (43%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLY 545
+G K + C + N I C G W+ P+C + C P N V++ K
Sbjct: 177 HGTKLSYTCEEGFKISENNVIIC-HMGKWSSPPQCVGIPCGIPPYILNDVVSHN-KDSYQ 234
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDK 725
Y ++ TY C++ + DGP + C G WS C ++ +++ E + D+
Sbjct: 235 YGEEVTYKCNEGFGTDGPASIRC-LGGEWSCSQDCISTNCVNLPTF------EDAVLIDR 287
Query: 726 FKNGMLHGQKISFFC 770
K+ G++++F C
Sbjct: 288 EKDFYRSGEQVAFKC 302
>ref|NP_001098497.1| hypothetical protein LOC790886 [Bos taurus].
Length = 395
Score = 65.9 bits (159), Expect = 5e-11
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 17/244 (6%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
YA G ++ YTC+ G+ G IC + G W +S P
Sbjct: 175 YAHGTKLSYTCEEGFKISGN-NVIICHM-GKWS--------------SPPQCIDVSCVNP 218
Query: 345 LAGNNSLY---------GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPF 491
N++ G +A +EC+ + +FG + C +G WTE P+CK+ KC
Sbjct: 219 PQVENAIIHNQKSRYQSGERARYECIGNYDLFGETEVICL-NGIWTEPPQCKDSHGKCGP 277
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
P +NG + + V Y C Y L G V C G WS P C +C +S
Sbjct: 278 PPPIDNGDITSLLQSVYPPGSIVEYRCQAYYELRGNRNVVCQN-GEWSQLPKCLEACLIS 336
Query: 672 VKRATVIYEGERVNIQDKFKNGMLHGQK----ISFFCRNKEKKCS--YTEDAQCIDGTIE 833
+ + +IQ ++K+ K I F C+ ++ + +T A C +G +
Sbjct: 337 EETM------RKHHIQLRWKHDKKIYSKTEDTIEFMCQYGYRQLTPKHTFRATCREGKVV 390
Query: 834 IPKC 845
P+C
Sbjct: 391 YPRC 394
Score = 50.1 bits (118), Expect = 3e-06
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 16/190 (8%)
Frame = +3
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGN-GTITCTEHGNWTELPECKEVK---CPFPSRP 503
Y P + ++ G C +++ N T+TCTE G W+ P C VK C P +
Sbjct: 94 YTPSSERKAVQGETVRVRCYYGYSLQNNQNTMTCTESG-WSPPPRCIRVKNTGCSQPPQI 152
Query: 504 ENGFVNYPA---------KQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSC- 650
++G +N + +Q LY + K +Y C + + + G + C+ G WS+ P C
Sbjct: 153 DHGTINSSSSAEERREIHEQRLYAHGTKLSYTCEEGFKISGNNVIICH-MGKWSSPPQCI 211
Query: 651 KASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT- 827
SC + I ++ Q G++ + C TE C++G
Sbjct: 212 DVSCVNPPQVENAIIHNQKSRYQS--------GERARYECIGNYDLFGETE-VICLNGIW 262
Query: 828 IEIPKCFKEH 857
E P+C H
Sbjct: 263 TEPPQCKDSH 272
>ref|NP_001229494.1| membrane cofactor protein isoform 5 [Bos taurus].
Length = 344
Score = 65.9 bits (159), Expect = 5e-11
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Frame = +3
Query: 153 LKSSYAPGEEIVYTCQPGY--VSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAK 326
LK SY+PGE+IVY C+ G+ V+ G + +C W +
Sbjct: 58 LKPSYSPGEQIVYECRLGFQPVTPGQVLALVCQDNNTWSSLQEGCKKRRCPTLADPTNGQ 117
Query: 327 LSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHG----NWTELPE-CKEVKCPF 491
+ L ++ +G + + C + + G C NW++ P C+++ C
Sbjct: 118 VI----LVNGSTAFGSEVHYVCNNGYYLLGTNISYCEVSSGTGVNWSDNPPTCEKILCQP 173
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCH-----DTYTLDGPEEVECNKFGNWSAQ-PSCK 653
P +NG K V Y + TY C D Y+L G ++ C G WS+Q P CK
Sbjct: 174 PPEIQNGKYTNSHKDVFEYNEVVTYSCDPSNGPDEYSLVGESKLTCIGNGEWSSQPPQCK 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,600,278
Number of extensions: 1045821
Number of successful extensions: 4339
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 4014
Number of HSP's successfully gapped: 119
Length of query: 304
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,306,398
Effective search space: 2889892396
Effective search space used: 2889892396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360630.1| PREDICTED: beta-2-glycoprotein 1-like [Sus s... 533 e-152
Alignment gi|XP_003131314.1| PREDICTED: beta-2-glycoprotein 1-like [Sus s... 533 e-152
Alignment gi|XP_003122123.1| PREDICTED: sushi, von Willebrand factor type... 75 5e-14
Alignment gi|NP_999446.1| complement factor H [Sus scrofa]. 69 4e-12
Alignment gi|NP_999433.1| E-selectin [Sus scrofa]. 67 1e-11
Alignment gi|NP_999243.1| P-selectin [Sus scrofa]. 67 2e-11
Alignment gi|XP_003357473.1| PREDICTED: complement receptor type 2 [Sus s... 65 4e-11
Alignment gi|XP_003361662.1| PREDICTED: coagulation factor XIII B chain [... 62 3e-10
Alignment gi|XP_003355040.1| PREDICTED: CUB and sushi domain-containing p... 62 4e-10
Alignment gi|NP_999053.1| membrane cofactor protein precursor [Sus scrofa]. 59 4e-09
>ref|XP_003360630.1| PREDICTED: beta-2-glycoprotein 1-like [Sus scrofa].
Length = 345
Score = 533 bits (1372), Expect = e-152
Identities = 263/345 (76%), Positives = 267/345 (77%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG
Sbjct: 1 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 60
Query: 225 IRRFI------------------CPLTGL------------------------------- 257
IRRFI CP G+
Sbjct: 61 IRRFICPLTGLWPINTLKCLPRVCPFAGILENGAVRYTTFEYPNTISFTCNRGFSLKGAN 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W + FAKLSVYKPLAGNNSLYGGKAVFECLPQHAM
Sbjct: 121 SAKCTEEGKWSPDLPVCTPITCPPPPTPKFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL
Sbjct: 181 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC
Sbjct: 241 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDAS+VKPC
Sbjct: 301 KNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASDVKPC 345
>ref|XP_003131314.1| PREDICTED: beta-2-glycoprotein 1-like [Sus scrofa].
Length = 345
Score = 533 bits (1372), Expect = e-152
Identities = 263/345 (76%), Positives = 267/345 (77%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG
Sbjct: 1 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 60
Query: 225 IRRFI------------------CPLTGL------------------------------- 257
IRRFI CP G+
Sbjct: 61 IRRFICPLTGLWPINTLKCLPRVCPFAGILENGAVRYTTFEYPNTISFTCNRGFSLKGAN 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W + FAKLSVYKPLAGNNSLYGGKAVFECLPQHAM
Sbjct: 121 SAKCTEEGKWSPDLPVCTPITCPPPPTPKFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL
Sbjct: 181 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC
Sbjct: 241 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDAS+VKPC
Sbjct: 301 KNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASDVKPC 345
>ref|XP_003122123.1| PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin
domain-containing protein 1 [Sus scrofa].
Length = 3257
Score = 75.1 bits (183), Expect = 5e-14
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G + F C H + G ITC E G W+ E+P C+ + C P+ PENG ++ A
Sbjct: 1494 GAEVTFSCEDGHQLMGVAKITCLESGEWSHEIPNCEAISCGAPAVPENGGIDGSA---FT 1550
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQP 644
Y K TY C+ YTL+G +E C G+WS P
Sbjct: 1551 YGSKVTYRCNKGYTLEGEKESSCLASGSWSHSP 1583
Score = 72.4 bits (176), Expect = 3e-13
Identities = 51/184 (27%), Positives = 72/184 (39%), Gaps = 2/184 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C P + F V P S+ G + Y+C G+ RG F C G W
Sbjct: 2067 CLPPPLISFGVPAP-SSALHFGSTVKYSCVDGFFLRGDPTTF-CQADGTWSSPLPECVPV 2124
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPE 467
+ V Y A++ C P + GN T C E G+W + P
Sbjct: 2125 ECPHPEEILNGIIDV------QGLAYLSTALYTCKPGFELVGNTTTLCGEDGHWLGKKPT 2178
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-P 644
CK ++C P NG +Y L+Y TY C + L+GP+ + C + G+W P
Sbjct: 2179 CKPIECSKPKEISNGKFSYTN---LHYGQTITYSCDRGFRLEGPKALTCLETGDWDVDVP 2235
Query: 645 SCKA 656
SC A
Sbjct: 2236 SCSA 2239
Score = 64.7 bits (156), Expect = 7e-11
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 4/207 (1%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y G E+ ++C+ G+ G + + C +G W +
Sbjct: 1491 YTVGAEVTFSCEDGHQLMG-VAKITCLESGEWSHEIPNCEAISCGAPAVPENGGID---- 1545
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGFVN 521
G+ YG K + C + + G +C G+W+ P C+ VKC P +G
Sbjct: 1546 --GSAFTYGSKVTYRCNKGYTLEGEKESSCLASGSWSHSPPVCELVKCSSPEDISHGKYL 1603
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKASCKLSVKRATVIYE 698
L Y TY C Y+L GP VEC+ G+W A P+C +++
Sbjct: 1604 LSG---LTYLSTVTYSCETGYSLQGPSVVECSASGSWDRAPPTC-----------GLVFC 1649
Query: 699 GERVNIQDKFKNG--MLHGQKISFFCR 773
GE I+D G G +++ C+
Sbjct: 1650 GEPPTIKDAVITGSNFSFGNTVTYTCK 1676
Score = 61.2 bits (147), Expect = 7e-10
Identities = 58/219 (26%), Positives = 79/219 (36%), Gaps = 5/219 (2%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C PE+LP P S+ G I Y C PGY G R C W +
Sbjct: 2634 SCGPPEDLPHGF--PNGFSFYHGGHIQYQCFPGYKLHGSPSRR-CLSNNSWSGSPPSCLP 2690
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYG-GKAV-FECLPQHAMFGNGTITCTEHGNW-TE 458
V + A N + +G GKA C + G ITC +G W T
Sbjct: 2691 CR---------CSTPVIQNGAINGTDFGCGKAARIRCFKGFQLLGLSEITCEANGQWSTS 2741
Query: 459 LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS- 635
P C+ C P N FV+ ++ TY C Y + G ++ C + G WS
Sbjct: 2742 FPSCEHTFCGSPPVIPNAFVSESGS---LQENVITYNCRSGYVMQGSSDLTCTEKGTWSQ 2798
Query: 636 AQPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
P C+ SC + GE + K + L G
Sbjct: 2799 PYPVCEPLSCGPPPSVPNAVATGEAHTYESKVRLRCLEG 2837
Score = 59.7 bits (143), Expect = 2e-09
Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 6/170 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVL 542
+G + C+ + G+ T C G W+ LPEC V+CP P NG ++ Q L
Sbjct: 2086 FGSTVKYSCVDGFFLRGDPTTFCQADGTWSSPLPECVPVECPHPEEILNGIIDV---QGL 2142
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKASCKLSVKRATVIYEGERVNIQ 719
Y A Y C + L G C + G+W +P+CK + + I G
Sbjct: 2143 AYLSTALYTCKPGFELVGNTTTLCGEDGHWLGKKPTCK---PIECSKPKEISNG------ 2193
Query: 720 DKFKNGMLH-GQKISFFCRNKEKKCSYTEDAQCI---DGTIEIPKCFKEH 857
KF LH GQ I++ C ++ + + C+ D +++P C H
Sbjct: 2194 -KFSYTNLHYGQTITYSC-DRGFRLEGPKALTCLETGDWDVDVPSCSAIH 2241
Score = 58.5 bits (140), Expect = 5e-09
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Frame = +3
Query: 180 EIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP----- 344
E+ Y C PGY S G F+C W + L+ KP
Sbjct: 1912 EVRYRCNPGYKSVGS-PVFVCQANRHWHSESPLSCIP------------LNCGKPPPIQN 1958
Query: 345 --LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP--ECKEVKCPFPSRPENG 512
+ G N G K F C + + G+ + TC + G W++ P +C KCP P EN
Sbjct: 1959 GYMKGENFEVGSKVQFFCNEGYELIGDHSWTCLKSGKWSKKPNQKCMPTKCPEPPLLENQ 2018
Query: 513 FVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
V K++ T+ C + + L GP ++C W+ + P CK
Sbjct: 2019 LV---LKELTTDVGVVTFSCKEGHALQGPSVLKCLPSQQWNDSFPVCK 2063
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/172 (25%), Positives = 61/172 (35%), Gaps = 1/172 (0%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S Y +E+ Y C G++ G R +C G W T +
Sbjct: 2533 SEYTFQKEVEYICNVGFLLEGASSR-LCLADGSWSGTTPMCVPVRCAPPPQVANGVMD-- 2589
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGF 515
G + +G + F C + + G +TC GNW + P CK V C P +GF
Sbjct: 2590 ----GLDYGFGKEVEFRCQEGYMLHGAPKLTCQSDGNWDAQFPLCKPVSCGPPEDLPHGF 2645
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS 671
N + Y+ Y C Y L G C +WS P C+ S
Sbjct: 2646 PNGFS---FYHGGHIQYQCFPGYKLHGSPSRRCLSNNSWSGSPPSCLPCRCS 2694
Score = 57.0 bits (136), Expect = 1e-08
Identities = 34/96 (35%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K C P M GN C G WT+ LP C+ + C P ENGF Y A+ +
Sbjct: 1337 GSKISLFCDPGFQMIGNPEQYCLNQGQWTQPLPRCERISCGVPPPLENGF--YSAED-FH 1393
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
TY C+ Y L G + C G+W+ PSC
Sbjct: 1394 AGSTVTYQCNHGYYLLGDSRMFCTDNGSWNGISPSC 1429
Score = 57.0 bits (136), Expect = 1e-08
Identities = 60/243 (24%), Positives = 81/243 (33%), Gaps = 57/243 (23%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C KPE V S Y+ IVY C+ GY G R +C G W
Sbjct: 2926 SCGKPESPEHGFV--FGSEYSFESTIVYHCETGYELEGSRER-VCQENGQWSGGVATCKK 2982
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
K V NS G V+ C +++ G +CTE+ W+ +P
Sbjct: 2983 TRCEAPPELLNGKAEV------ENSTAGLSVVYSCNRGYSLEGVPEASCTENETWSHPVP 3036
Query: 465 ECKEVKCPFPSR-PEN--------------------GFV--------------------- 518
CK CP P PEN GF+
Sbjct: 3037 LCKPNPCPVPFVIPENALLSEKEFYVDQNVSIKCREGFLLQGQSIITCRPDETWTQTSAK 3096
Query: 519 -------------NYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKA 656
N A+ V Y Y D TY C+ Y L+G C + G W++ P C+A
Sbjct: 3097 CEKISCGPPTHVENAIARGVHYQYGDMITYSCYSGYMLEGSLRSVCLENGTWTSPPVCRA 3156
Query: 657 SCK 665
C+
Sbjct: 3157 VCR 3159
Score = 55.1 bits (131), Expect = 5e-08
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +3
Query: 363 LYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQV 539
LY ++ C P + + GN + C E G W P C ++C P+ PE+G +++ +
Sbjct: 2362 LYNTMVLYTCHPGYELLGNPVLICQEDGTWNGSAPSCISIECNLPAAPEHGSLHFTETTM 2421
Query: 540 LYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKA-SCK 665
Y C YTL G + C + WS P C+A SC+
Sbjct: 2422 ---GSAVQYSCKLGYTLVGSDLRLCLQNREWSGTSPHCEAISCQ 2462
Score = 53.1 bits (126), Expect = 2e-07
Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 5/225 (2%)
Frame = +3
Query: 111 CPKPEELPFAVVVPL-KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
C KP + + ++ L K+ +A G + + C G+V + C G W N
Sbjct: 1769 CEKPPTVSYGILESLSKAKFAAGSIVSFKCMEGFVLNTSAK-IECMRGGQW--NPSPMSI 1825
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
+ L+ Y G+N +G + C + G C G W+ +P
Sbjct: 1826 QCIPVRCGEPPSILNGYA--IGSNYSFGAIVAYSCNRGFYIKGEKKSACEATGQWSSPIP 1883
Query: 465 ECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQP 644
C V C P + ENGF+ + + ++ + Y C+ Y G C +W ++
Sbjct: 1884 TCHPVSCSEPPKVENGFLEHTTGRT--FESEVRYRCNPGYKSVGSPVFVCQANRHWHSES 1941
Query: 645 --SC-KASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
SC +C +GE + G K+ FFC
Sbjct: 1942 PLSCIPLNCGKPPPIQNGYMKGENFEV----------GSKVQFFC 1976
Score = 51.6 bits (122), Expect = 6e-07
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 1/160 (0%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S++ G ++ Y C GY G + C +G W + K +
Sbjct: 1547 SAFTYGSKVTYRCNKGYTLEGE-KESSCLASGSWSHSPPVCELVKCSSPEDISHGKYLL- 1604
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGF 515
+ Y + C +++ G + C+ G+W P C V C P ++
Sbjct: 1605 -----SGLTYLSTVTYSCETGYSLQGPSVVECSASGSWDRAPPTCGLVFCGEPPTIKDAV 1659
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
+ + + TY C + YTL GP+ +EC G WS
Sbjct: 1660 IT---GSNFSFGNTVTYTCKEGYTLAGPDTIECLASGKWS 1696
Score = 51.6 bits (122), Expect = 6e-07
Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 5/161 (3%)
Frame = +3
Query: 183 IVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNS 362
++YTC PGY G IC G W + L +
Sbjct: 2367 VLYTCHPGYELLGN-PVLICQEDGTWNGSAPSCISIECNLPAAPEHGSLHF------TET 2419
Query: 363 LYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFV---NYPA 530
G + C + + G+ C ++ W+ P C+ + C P+ NG + NY
Sbjct: 2420 TMGSAVQYSCKLGYTLVGSDLRLCLQNREWSGTSPHCEAISCQKPNPILNGSIKGSNYTY 2479
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
VLYY+ C+ Y L+G E C + NW +P C
Sbjct: 2480 LSVLYYE------CNPGYVLNGTERRTCQENENWDGKEPVC 2514
Score = 51.2 bits (121), Expect = 8e-07
Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 6/226 (2%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C PE++ + +Y + Y+C+ GY S G C +G W
Sbjct: 1591 CSSPEDISHGKYLLSGLTYL--STVTYSCETGY-SLQGPSVVECSASGSWDRAPPTCGLV 1647
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PE 467
A ++ G+N +G + C + + G TI C G W+E +
Sbjct: 1648 FCGEPPTIKDAVIT------GSNFSFGNTVTYTCKEGYTLAGPDTIECLASGKWSESDQQ 1701
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW----- 632
C V C P E+ P + D A Y C D Y+L ++ CN G W
Sbjct: 1702 CLAVSCDEPPVVEHA---SPETAHRLFGDIAFYYCSDGYSLADNSQLLCNAQGQWVPPEG 1758
Query: 633 SAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
P C A K TV Y + KF G + +SF C
Sbjct: 1759 QTMPHCIA--HFCEKPPTVSYGILESLSKAKFAAGSI----VSFKC 1798
Score = 49.3 bits (116), Expect = 3e-06
Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 5/183 (2%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C +P + AV+ S+++ G + YTC+ GY + G C +G W +
Sbjct: 1649 CGEPPTIKDAVITG--SNFSFGNTVTYTCKEGY-TLAGPDTIECLASGKWSESDQQCLAV 1705
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE---- 458
A + L+G A + C +++ N + C G W
Sbjct: 1706 SCDEPPVVEHASPETA------HRLFGDIAFYYCSDGYSLADNSQLLCNAQGQWVPPEGQ 1759
Query: 459 -LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
+P C C P G + +K ++ C + + L+ ++EC + G W+
Sbjct: 1760 TMPHCIAHFCEKPPTVSYGILESLSKAKFAAGSIVSFKCMEGFVLNTSAKIECMRGGQWN 1819
Query: 636 AQP 644
P
Sbjct: 1820 PSP 1822
Score = 48.5 bits (114), Expect = 5e-06
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 16/242 (6%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXX 284
+ CP P L +V ++ +++ +C GY G + C L G W
Sbjct: 2865 KKCPLPANLTHIIVHG--DDFSVNKQVSVSCAEGYTYEG-VNISTCQLDGTWE------- 2914
Query: 285 XXXXXXXXXXXFAKLSVYKP-------LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEH 443
+ +S KP + G+ + V+ C + + G+ C E+
Sbjct: 2915 ----PLFSDESCSPVSCGKPESPEHGFVFGSEYSFESTIVYHCETGYELEGSRERVCQEN 2970
Query: 444 GNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
G W+ + CK+ +C P NG Y C+ Y+L+G E C +
Sbjct: 2971 GQWSGGVATCKKTRCEAPPELLNGKAEVENSTAGL---SVVYSCNRGYSLEGVPEASCTE 3027
Query: 621 FGNWS-AQPSCKAS-CKLS--VKRATVIYEGE---RVNIQDKFKNG-MLHGQKISFFCRN 776
WS P CK + C + + ++ E E N+ K + G +L GQ I CR
Sbjct: 3028 NETWSHPVPLCKPNPCPVPFVIPENALLSEKEFYVDQNVSIKCREGFLLQGQSI-ITCRP 3086
Query: 777 KE 782
E
Sbjct: 3087 DE 3088
>ref|NP_999446.1| complement factor H [Sus scrofa].
Length = 1234
Score = 68.9 bits (167), Expect = 4e-12
Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 17/252 (6%)
Frame = +3
Query: 141 VVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW---PINTXXXXXXXXXXXXX 311
V+ P K SY GE++ + C Y G C + W P
Sbjct: 1006 VIGPKKPSYKSGEQVTFKCLQ-YFQLEGPNTIRC-IKSRWIGKPACRDVSCVNPPSVENA 1063
Query: 312 XXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KC 485
K S Y+P G +A +EC+ +A++G+ + C +G+WT+ P+CK+ KC
Sbjct: 1064 VILDKRSRYQP--------GERARYECIEPYALYGDVEVMCF-NGSWTKPPQCKDSKGKC 1114
Query: 486 PFPSRPENGFVN------YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPS 647
P +NG YP V+ YQ C Y L+G ++C G WS P
Sbjct: 1115 GPPPPIDNGDTTSFPLPVYPPGTVVEYQ------CQSYYELEGSSSIKCEN-GQWSEPPK 1167
Query: 648 CKASCKLSVKRATVIYEGERVNIQDKFK-NGMLHGQ---KISFFCRN--KEKKCSYTEDA 809
C +C +S + + NI+ K++ + L+ + I F CR + +T A
Sbjct: 1168 CLDACVVSEEMM------RKHNIELKWRPDKKLYSRTDDTIEFRCRQGYYRRTPLHTFRA 1221
Query: 810 QCIDGTIEIPKC 845
C G + P C
Sbjct: 1222 TCQQGKVAYPTC 1233
Score = 66.2 bits (160), Expect = 2e-11
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 5/170 (2%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+ +Y G + Y C+PGY + G I +C G W ++
Sbjct: 39 EQTYPEGTQATYKCRPGYRTLGSIV-MVCK-DGKW-VSLHPSRICRKKPCGHPGDTSFGS 95
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENG 512
+ G YG K V+ C + M G + WT +P C+ VKC + PENG
Sbjct: 96 FHLAVGTQFEYGAKVVYTCDEGYQMLGEINFRECDTNGWTNNIPLCEVVKCLPVTEPENG 155
Query: 513 FVNYPA---KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
+ A Q Y + C+ Y+LDGP+++ C+ G WS +P C
Sbjct: 156 RIVSGALEPDQEYTYGQVVQFQCNAGYSLDGPKQIHCSAGGVWSGDKPKC 205
Score = 48.5 bits (114), Expect = 5e-06
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKA----TYGCHDTYT 587
G+I C E G W++ P C E +C P G +Y + + + K + C +
Sbjct: 547 GSIVCGEDG-WSDKPACYERECITP-----GIKSYLDAEPKHNKFKVGGVLKFHCRERRV 600
Query: 588 LDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISF 764
+ G + V+C FG WS P+CKA S + GE +++ K H + + +
Sbjct: 601 MLGADSVQCYHFG-WSPNLPTCKAGQVKSCAPPPQLLNGE---VKETQKGEYQHSEVVEY 656
Query: 765 FCRNKEKKCSYTEDAQCIDGT-IEIPKCFKE 854
C N + QC+DG +P C +E
Sbjct: 657 VC-NPRFLMKGSHKIQCVDGEWTTLPVCIEE 686
>ref|NP_999433.1| E-selectin [Sus scrofa].
Length = 482
Score = 67.0 bits (162), Expect = 1e-11
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNY--PAKQ 536
Y F C + G I CT G WT+ P CK VKCP S+P+NGFV +
Sbjct: 263 YKSTCHFTCAEGFGLQGPAQIECTAQGQWTQQAPVCKAVKCPAVSQPKNGFVKFTHSPNG 322
Query: 537 VLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKA 656
Y + C + + L G ++ C G W+ + PSC+A
Sbjct: 323 EFTYNSSCAFSCEEGFELRGSAQLACTSQGQWTQEVPSCQA 363
Score = 63.2 bits (152), Expect = 2e-10
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKA 560
FEC + G + CT G+W + P CK V C P+NG V+Y + + K+
Sbjct: 206 FECKEGFELIGPEHLQCTSSGSWDGKKPTCKAVTCDTVGHPQNGDVSYNHSSIGEFAYKS 265
Query: 561 T--YGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKA 656
T + C + + L GP ++EC G W+ Q P CKA
Sbjct: 266 TCHFTCAEGFGLQGPAQIECTAQGQWTQQAPVCKA 300
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVL 542
Y F C + G+ + CT G WT E+P C+ V+C P +N
Sbjct: 326 YNSSCAFSCEEGFELRGSAQLACTSQGQWTQEVPSCQAVQCSSLEVPRE--INMSCSGEP 383
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEG 701
+ T+ C + + L+G + C G+WS P+C+A + + A + G
Sbjct: 384 MFGAVCTFACPEGWMLNGSVALTCGATGHWSGMLPTCEAPAESKIPLAMGLAAG 437
>ref|NP_999243.1| P-selectin [Sus scrofa].
Length = 646
Score = 66.6 bits (161), Expect = 2e-11
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Frame = +3
Query: 357 NSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENG-FVNYPA 530
N + + F C + + G + C GNWT P +C V+CP PE G +
Sbjct: 219 NFSFNSQCSFHCAEGYTLNGPSELECLASGNWTHPPPQCVAVQCPALKSPEKGNMACLHS 278
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKA 656
++ YQ + C + Y L GPE V+C G W+A P CKA
Sbjct: 279 EKAFQYQSSCNFSCEEGYALVGPEVVQCQASGMWTAPVPVCKA 321
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVN-YPAKQV 539
Y F C +A+ G + C G WT +P CK + C P G ++ +P+ +
Sbjct: 284 YQSSCNFSCEEGYALVGPEVVQCQASGMWTAPVPVCKAITCEPLESPVRGSMDCFPSSRA 343
Query: 540 LYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSCKA 656
Y ++ C +TL G + V C+ G W+A P C+A
Sbjct: 344 FQYNTSCSFRCAKGFTLRGADTVRCSNLGQWTAPAPVCQA 383
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVL 542
Y F C + G T+ C+ G WT P C+ ++C PE VN
Sbjct: 346 YNTSCSFRCAKGFTLRGADTVRCSNLGQWTAPAPVCQALQCQDLPAPEKAQVNCSHPFGA 405
Query: 543 Y-YQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSCK 653
+ YQ ++ C + +L G ++C + GNWSA P C+
Sbjct: 406 FRYQSTCSFTCDEGSSLVGASVLQCLETGNWSAPAPECQ 444
>ref|XP_003357473.1| PREDICTED: complement receptor type 2 [Sus scrofa].
Length = 1035
Score = 65.5 bits (158), Expect = 4e-11
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 4/198 (2%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP PE + SS++ + +V C+PG++ G + C W +
Sbjct: 789 CPNPEVAHGYKLNNTNSSFSHNDIVVIACEPGFIMNGS-QSIRCQTNNKWVPDVPTCIKK 847
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTE-L 461
K+ G+ + G ++ C + + G + CT GNW +
Sbjct: 848 AFFGCHRP--VKIPYGNHTGGDILRFSPGMSVLYSCNQGYLLVGEALLLCTHEGNWNQPA 905
Query: 462 PECKEVKCPFPSRPENGFVNYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSA 638
P CKEV C FP NG N + +Y Y T C + YTL+G + +C + W+
Sbjct: 906 PYCKEVNCSFPEH-VNGIQNGLEPRKMYQYGAVVTLECEEGYTLEGSPQSQCQEDHRWNP 964
Query: 639 QPSCKASCKLSVKRATVI 692
A CK R +I
Sbjct: 965 P---LAVCKSPSSRVPLI 979
Score = 53.1 bits (126), Expect = 2e-07
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Frame = +3
Query: 357 NSLYGGKAVFECLP------QHAMFGNGTITCT----EHGNWT-ELPECK----EVKCPF 491
N YG + C P + G TI CT ++G W+ P C+ EV+CP
Sbjct: 295 NIPYGSSVTYTCDPGPEEGVNFILIGESTIHCTTDSQKNGIWSGPAPHCELSVSEVRCP- 353
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKASCKL 668
P + G ++ K Y D + C +T+ G +E+ CN G W + P C+ C+
Sbjct: 354 PPQILRGQISSRKKDQYSYNDTVVFACLFGFTMKGSKEIRCNAQGTWEPSVPVCEKDCQA 413
Query: 669 SVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
K I G++ +DK G + + C
Sbjct: 414 PPK----ILHGQK---EDKHVIRFDPGTSVKYSC 440
Score = 52.8 bits (125), Expect = 3e-07
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 24/259 (9%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
+S+APG + Y+C+PGY+ G + C +G W N F +
Sbjct: 172 ASFAPGFSVTYSCEPGYLLLGE-KTIRCLSSGNW--NAVSPTCKEAECQPPGPFLNGQIK 228
Query: 339 KPLAGNNSLYGGKAV-FECLPQHAMFGNGTITCTEHGN---WTELPECKEVKCPFPSRPE 506
K + SL G+ V F C + + G+ + C G WT++P C+++ C P
Sbjct: 229 K----SESLRVGETVHFSCNEGYRLLGSPSSQCVIVGQRPFWTKMPICEKIFCSPPPPIR 284
Query: 507 NGFVNYPAKQVLYYQDKATYGCHD------TYTLDGPEEVEC----NKFGNWSA-QPSCK 653
NG + + Y TY C + L G + C K G WS P C+
Sbjct: 285 NGRHTGSSSVNIPYGSSVTYTCDPGPEEGVNFILIGESTIHCTTDSQKNGIWSGPAPHCE 344
Query: 654 ASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC-------RNKEKKCSYTEDAQ 812
S I G+ I + K+ + + F C +KE +C+
Sbjct: 345 LSVSEVRCPPPQILRGQ---ISSRKKDQYSYNDTVVFACLFGFTMKGSKEIRCN------ 395
Query: 813 CIDGTIE--IPKCFKEHSA 863
GT E +P C K+ A
Sbjct: 396 -AQGTWEPSVPVCEKDCQA 413
>ref|XP_003361662.1| PREDICTED: coagulation factor XIII B chain [Sus scrofa].
Length = 663
Score = 62.4 bits (150), Expect = 3e-10
Identities = 62/254 (24%), Positives = 94/254 (37%), Gaps = 15/254 (5%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICP-LTGLWPINTXXX 281
+ CPKP+ L ++ K Y E + Y C GY + G + L G W
Sbjct: 89 KKCPKPD-LRNGYILDTKLFYKIQENMHYGCSSGYKTTAGQDEEVVQCLAGGWSSQPTCR 147
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLP-QHAMFGNGT--ITCTEHGNW 452
S + K +EC P H G T + C +G W
Sbjct: 148 KEHETCLAPELHHGSYSTTQ----KTFKVKDKVRYECAPGYHTASGKRTEEVECHPYG-W 202
Query: 453 TELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
P C ++KC ENG+ +P KQ D + CH Y L G + ++C FG +
Sbjct: 203 ALTPRCAKLKCSSLRLIENGYF-HPVKQTYEEGDVVQFFCHKNYHLSGADLIQCYNFGWY 261
Query: 633 SAQPSCKA----------SCKLSVKRATVIY-EGERVNIQDKFKNGMLHGQKISFFCRNK 779
P C+ V+ ++ Y GE V I+ G+ ++I C N
Sbjct: 262 PESPVCEGRRNRCPPPPLPLNSRVQTYSIAYRHGETVRIECGLNFGIRGSEEIR--CENG 319
Query: 780 EKKCSYTEDAQCID 821
+ +TE QC++
Sbjct: 320 K----WTEPPQCVE 329
Score = 60.1 bits (144), Expect = 2e-09
Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFV------NY 524
G K + C + + G G I CT G WT P C E C P NG V NY
Sbjct: 357 GDKVTYTCESGYHLRGPGEIICTR-GKWTLPPACVENTENCNPPPDIINGAVIGGLLANY 415
Query: 525 PAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGE 704
A + Y+ C++ Y L G + C + G WS P C C + V +
Sbjct: 416 TAGSSVEYR------CNEYYLLKGAKISHCEQ-GKWSTPPVCLEPCSVDVDHLS------ 462
Query: 705 RVNIQDK--FKNGMLHGQKISFFCR---NKEKKCSYTE-DAQCIDGTIEIPKCFKEHS 860
R N++ K ++ +LHG I F C+ + +E QC G ++ P C ++ S
Sbjct: 463 RNNLEMKWNYEGKILHGDLIDFVCKQGYDLSPSSPLSELSVQCNRGEVKYPLCIRKES 520
>ref|XP_003355040.1| PREDICTED: CUB and sushi domain-containing protein 3, partial [Sus
scrofa].
Length = 1947
Score = 62.0 bits (149), Expect = 4e-10
Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 2/162 (1%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKPLAG 353
G ++TC G++ G R C +GLW +L V + G
Sbjct: 1018 GSTAIFTCDSGFMLVGSAVRE-CLSSGLWS------GSETRCLAGHCGVPELIVNGQVIG 1070
Query: 354 NNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPA 530
N Y V++C P + G+ C + NW+ +LP C V C P P G +
Sbjct: 1071 ENYGYRDTVVYQCNPGFRLIGSSVRICQQDHNWSGQLPSCVPVSCGHPGSPIYGRTSGNG 1130
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
+ D T+ C+ Y + GP + +C WS P CK
Sbjct: 1131 ---FNFNDVVTFSCNTGYLMQGPTKAQCQANRQWSHPPPVCK 1169
Score = 59.7 bits (143), Expect = 2e-09
Identities = 50/206 (24%), Positives = 74/206 (35%), Gaps = 3/206 (1%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGY-VSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
Y G+ + Y CQPGY + G R C G W +L
Sbjct: 1429 YVVGQNVSYMCQPGYTMELNGSRIRTCTTNGTWSGVMPTCRAVTCPTPPQISNGRLE--- 1485
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFV 518
G N +G + C P + + +TC +G W+ E+P+C C P P G
Sbjct: 1486 ---GTNFDWGFSISYICSPGYELSFPAVLTCVGNGTWSGEVPQCLPKFCGDPGIPAQG-- 1540
Query: 519 NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKASCKLSVKRATVIY 695
K + YQ + ++ C+ + L G C G WS + P C + S V
Sbjct: 1541 KREGKSFI-YQSEVSFSCNSPFILVGSSTRICQADGTWSGSSPHCIEPTRTSCDNPGVPR 1599
Query: 696 EGERVNIQDKFKNGMLHGQKISFFCR 773
G + N G G + F C+
Sbjct: 1600 HGSQNN-----TFGFQVGSVVQFHCK 1620
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 357 NSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAK 533
N YG ++C P + +FG+ + C +G W + LPEC + C P P N + +
Sbjct: 1192 NFTYGTVVFYDCNPGYFLFGSSVLICQPNGQWDKPLPECIMIDCGHPGVPPNAVL---SG 1248
Query: 534 QVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
+ + Y C TL G C G+WS +QP C
Sbjct: 1249 EKYTFGSTVHYSCTGKRTLLGQSSRTCQLNGHWSGSQPHC 1288
Score = 53.5 bits (127), Expect = 2e-07
Identities = 43/166 (25%), Positives = 63/166 (37%), Gaps = 5/166 (3%)
Frame = +3
Query: 153 LKSSYAPGEEIVYTCQPGY-VSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFA-K 326
L + Y G + Y C GY +S + +C G W + F +
Sbjct: 884 LTTDYLVGTRVTYFCNDGYRLSSKELTTAVCQSDGTWSNHNKTPRCVVVTCPSINSFTLE 943
Query: 327 LSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT---ELPECKEVKCPFPS 497
++ + G++ Y K VF C P + G +I C +G W+ E P C+ + C
Sbjct: 944 HGRWRIVNGSHYEYKTKVVFSCDPGYHGLGPASIECLPNGTWSWRNERPYCQIISCGELP 1003
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
P NG N Q Y A + C + L G EC G WS
Sbjct: 1004 TPPNG--NKIGTQT-SYGSTAIFTCDSGFMLVGSAVRECLSSGLWS 1046
Score = 52.8 bits (125), Expect = 3e-07
Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 7/172 (4%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
++ G + Y C PGY G IC G W A LS
Sbjct: 1192 NFTYGTVVFYDCNPGYFLFGS-SVLICQPNGQWDKPLPECIMIDCGHPGVPPNAVLS--- 1247
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECK---EVKCPFPSRPEN 509
G +G + C + + G + TC +G+W+ P C C P P +
Sbjct: 1248 ---GEKYTFGSTVHYSCTGKRTLLGQSSRTCQLNGHWSGSQPHCSGDATGTCGDPGTPGH 1304
Query: 510 GFVNYPAKQVLYYQDKAT--YGCHDTYTLDGPEEVECNKFGNWSA-QPSCKA 656
G ++Q ++ K++ + C Y L G EE C G+W+ QP CKA
Sbjct: 1305 G-----SRQESDFRTKSSVRFACDTGYILHGSEERTCLANGSWTGRQPECKA 1351
Score = 52.4 bits (124), Expect = 3e-07
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKA 560
F C + + G+ TC +G+WT PECK ++C P NG V +
Sbjct: 1320 FACDTGYILHGSEERTCLANGSWTGRQPECKAIQCGNPGTTANGKVFRIDGTT--FSSSV 1377
Query: 561 TYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEGERVNIQDKFKNG 737
Y C + Y L GP +C G WS P+C +S + + G R + +
Sbjct: 1378 IYSCIEGYILSGPSVRQCTANGTWSGTLPNCTI---ISCEDPGIPANGLR------YGDD 1428
Query: 738 MLHGQKISFFCR 773
+ GQ +S+ C+
Sbjct: 1429 YVVGQNVSYMCQ 1440
Score = 50.4 bits (119), Expect = 1e-06
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 4/171 (2%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+S + + + C GY+ G R C G W K+
Sbjct: 1309 ESDFRTKSSVRFACDTGYILHGSEER-TCLANGSWTGRQPECKAIQCGNPGTTANGKV-- 1365
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENG 512
+ + + ++ C+ + + G CT +G W+ LP C + C P P NG
Sbjct: 1366 ---FRIDGTTFSSSVIYSCIEGYILSGPSVRQCTANGTWSGTLPNCTIISCEDPGIPANG 1422
Query: 513 FVNYPAKQVLYYQDKATYGCHDTYT--LDGPEEVECNKFGNWS-AQPSCKA 656
+ Y V+ +Y C YT L+G C G WS P+C+A
Sbjct: 1423 -LRYGDDYVV--GQNVSYMCQPGYTMELNGSRIRTCTTNGTWSGVMPTCRA 1470
>ref|NP_999053.1| membrane cofactor protein precursor [Sus scrofa].
Length = 363
Score = 58.9 bits (141), Expect = 4e-09
Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 18/219 (8%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSR-GGIRRF-ICPLTGLW-PINTXXX 281
C +P + L ++Y PG+ + Y C+PG+ + F +C W P+
Sbjct: 45 CDEPPKFESMRPQFLNTTYRPGDRVEYECRPGFQPMVPALPTFSVCQDDNTWSPLQEACR 104
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNS------LYGGKAVFECLPQHAMFGNGTITCTEH 443
A ++ PL G S L+G KA F C + G T+ C
Sbjct: 105 RK-----------ACSNLPDPLNGQVSYPNGDMLFGSKAQFTCNTGFYIIGAETVYCQVS 153
Query: 444 GN---WTE-LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGC-----HDTYTLDG 596
GN W+E P C+++ C P NG K V Y + TY C D ++L G
Sbjct: 154 GNVMAWSEPSPLCEKILCKPPGEIPNGKYTNSHKDVFEYNEVVTYSCLSSTGPDEFSLVG 213
Query: 597 PEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVN 713
+ C WS+ P CK+ V+ GE V+
Sbjct: 214 ESSLFCIGKDEWSSDP---PECKVVKCPYPVVPNGEIVS 249
Score = 52.0 bits (123), Expect = 5e-07
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +3
Query: 366 YGGKAVFECLP-----QHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYP 527
Y + CL + ++ G ++ C W+ + PECK VKCP+P P NG +
Sbjct: 192 YNEVVTYSCLSSTGPDEFSLVGESSLFCIGKDEWSSDPPECKVVKCPYPVVP-NGEIVSG 250
Query: 528 AKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRAT 686
YY+ + + C+ +TL G + + C W + P C K + AT
Sbjct: 251 FGSKFYYKAEVVFKCNAGFTLHGRDTIVCGANSTWEPEMPQCIKDSKPTDPPAT 304
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,147,172
Number of extensions: 668937
Number of successful extensions: 2410
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2256
Number of HSP's successfully gapped: 55
Length of query: 304
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 205
Effective length of database: 8,879,129
Effective search space: 1820221445
Effective search space used: 1820221445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038503.4| beta-2-glycoprotein 1 precursor [Mus musculus]. 394 e-110
Alignment gi|NP_112441.2| coagulation factor XIII B chain [Mus musculus]. 79 5e-15
Alignment gi|NP_056595.1| complement factor H-related 1 [Mus musculus]. 73 3e-13
Alignment gi|NP_035475.1| E-selectin [Mus musculus]. 70 2e-12
Alignment gi|NP_073725.2| sushi, von Willebrand factor type A, EGF and pe... 70 2e-12
Alignment gi|NP_034018.2| complement factor H [Mus musculus]. 69 5e-12
Alignment gi|NP_035477.1| P-selectin [Mus musculus]. 69 5e-12
Alignment gi|NP_001153775.1| complement factor H-related protein C isofor... 65 9e-11
Alignment gi|NP_001025148.3| complement factor H-related protein C isofor... 65 9e-11
Alignment gi|XP_003085377.1| PREDICTED: complement factor H [Mus musculus]. 62 6e-10
>ref|NP_038503.4| beta-2-glycoprotein 1 precursor [Mus musculus].
Length = 345
Score = 394 bits (1011), Expect = e-110
Identities = 189/345 (54%), Positives = 221/345 (64%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
M+ PVL F +FLCH AIAGR CPKP++LPFA VVPLK+SY PGE+IVY+C+PGYVSRGG
Sbjct: 1 MVSPVLALFSAFLCHVAIAGRICPKPDDLPFATVVPLKTSYDPGEQIVYSCKPGYVSRGG 60
Query: 225 IRRF------------------ICPLTGL------------------------------- 257
+RRF +CP G+
Sbjct: 61 MRRFTCPLTGMWPINTLRCVPRVCPFAGILENGIVRYTSFEYPKNISFACNPGFFLNGTS 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W + FA L Y+P AGNNSLY VF+CLP AM
Sbjct: 121 SSKCTEEGKWSPDIPACARITCPPPPVPKFALLKDYRPSAGNNSLYQDTVVFKCLPHFAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
GN T+ CTE GNWT LPEC EVKCPFP RPENG+VNYPAK VL Y+DKAT+GCH+TY L
Sbjct: 181 IGNDTVMCTEQGNWTRLPECLEVKCPFPPRPENGYVNYPAKPVLLYKDKATFGCHETYKL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPEE EC K G WS P+C+ SCKL VK+ATV+Y+G RV IQ++FKNGM+HG KI F+C
Sbjct: 241 DGPEEAECTKTGTWSFLPTCRESCKLPVKKATVLYQGMRVKIQEQFKNGMMHGDKIHFYC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYT +A C DGTIEIP CFKEHS+LAFWKTDAS + PC
Sbjct: 301 KNKEKKCSYTVEAHCRDGTIEIPSCFKEHSSLAFWKTDASELTPC 345
>ref|NP_112441.2| coagulation factor XIII B chain [Mus musculus].
Length = 669
Score = 79.0 bits (193), Expect = 5e-15
Identities = 71/260 (27%), Positives = 101/260 (38%), Gaps = 10/260 (3%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP P + + P ++Y GE + C+ +V +G +C G W
Sbjct: 275 CPPPPVPLNSKIQPHSTTYRHGERVHIECELNFVIQGS-EELLCE-NGKWTEPPKCIEEK 332
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELP 464
+ V P ++ +Y G K + C +++ G+ TITC G WT P
Sbjct: 333 EKVACEQPPSVENGVAHP---HSEIYYSGDKVTYRCGGGYSLRGSSTITCNR-GRWTLPP 388
Query: 465 ECKE--VKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA 638
EC E C P NG V Y C++ Y L G E C + G WS+
Sbjct: 389 ECVENIENCKPPPDIANGVVVDGLLASYTTGSSVEYRCNEYYLLKGSETSRCEQ-GAWSS 447
Query: 639 QPSCKASCKLSVKRATVIYEGERVNIQDKFK--NGMLHGQKISFFCR---NKEKKCSYTE 803
P C C + V R NIQ K+K +LHG I F C+ N +E
Sbjct: 448 PPVCLEPCTIDVDHMN------RNNIQLKWKYEGKILHGDLIDFVCKQGYNLSPSIPLSE 501
Query: 804 -DAQCIDGTIEIPKCFKEHS 860
AQC G + P C ++ S
Sbjct: 502 ISAQCNRGDVRYPMCIRKES 521
Score = 55.5 bits (132), Expect = 6e-08
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
G C +G W+ P+C ++ C ENG+ +P KQ D + CH+ Y L G
Sbjct: 194 GEAECQANG-WSLTPQCNKLMCSSLRLIENGYF-HPVKQTYEEGDVVQFFCHENYYLSGS 251
Query: 600 EEVECNKFGNWSAQPSCKA--------SCKLSVK---RATVIYEGERVNIQDKFKNGMLH 746
+ ++C FG + P C+ L+ K +T GERV+I+ + N ++
Sbjct: 252 DLIQCYNFGWYPESPICEGRRNRCPPPPVPLNSKIQPHSTTYRHGERVHIECEL-NFVIQ 310
Query: 747 GQKISFFCRNKEKKCSYTEDAQCID 821
G + C N + +TE +CI+
Sbjct: 311 GSE-ELLCENGK----WTEPPKCIE 330
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/147 (29%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Frame = +3
Query: 462 PEC--KEVK--CPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGN 629
P C KE K C P NG + A + Y C D + L G + V C G
Sbjct: 514 PMCIRKESKGMCASPPVIRNGDIVSSAARTYENGSSVEYRCFDNHFLQGSQNVYCVD-GV 572
Query: 630 WSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDA 809
W+ PSC C LS Y + N + + +LHG+ I F C+ ++ S T A
Sbjct: 573 WTTPPSCLEPCTLSFVEMDKNYLQLKWNFDN--RPLILHGEYIEFMCK-RDAYISETSIA 629
Query: 810 ------QCIDGTIEIPKCFKEHSALAF 872
QC G ++ PKC L+F
Sbjct: 630 GSVLRVQCDRGRLKYPKCTPRDRRLSF 656
>ref|NP_056595.1| complement factor H-related 1 [Mus musculus].
Length = 343
Score = 73.2 bits (178), Expect = 3e-13
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNWTELPEC--KEVKCPFPSRPENGFVNYPAKQVLYYQDK 557
++C + + GN TITC +G W+E P C KC P +NG + + +L Y+
Sbjct: 181 YQCQKYYLLKGNKTITC-RNGKWSEPPTCIYPTGKCGPPPPIDNGDIT--SLSLLEYEPL 237
Query: 558 AT--YGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS---VKRATVIY---EGERVN 713
++ Y C + Y L G + + C G WS P+C ++C +S ++R ++ + E+V
Sbjct: 238 SSVEYQCQNYYVLKGKKTITCRN-GKWSEPPTCLSACVISEAIMERHNILLRWRQSEKVY 296
Query: 714 IQDKFKNGMLHGQKISFFC--RNKEKKCSYTEDAQCIDGTIEIPKCFKEHS 860
IQ G+ I F C R K K S QCI+G I P C H+
Sbjct: 297 IQS--------GEDIEFGCKPRYKRAKGSLPFRTQCINGHINYPTCMLNHN 339
>ref|NP_035475.1| E-selectin [Mus musculus].
Length = 619
Score = 70.1 bits (170), Expect = 2e-12
Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 16/207 (7%)
Frame = +3
Query: 84 CHAAIAGRTCP-----KPEELPFAVVVPLKSSYAP---GEEIVYTCQPGYVSRGGIRRFI 239
CH G C KP+E P + + P + C+ GY+
Sbjct: 172 CHPGFLGPNCEQAVTCKPQEHPDYGSLNCSHPFGPFSYNSSCSFGCKRGYLPSSMETTVR 231
Query: 240 CPLTGLW--PINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLY--GGKAVFECLPQHA 407
C +G W P K S N Y F+C+ +
Sbjct: 232 CTSSGEWSAPAPACHVVECEALTHPAHGIRKCS------SNPGSYPWNTTCTFDCVEGYR 285
Query: 408 MFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGFVN--YPAKQVLYYQDKATYGCHD 578
G + CT G W E P CK V C +P+NGFV+ + L ++ + C
Sbjct: 286 RVGAQNLQCTSSGIWDNETPSCKAVTCDAIPQPQNGFVSCSHSTAGELAFKSSCNFTCEQ 345
Query: 579 TYTLDGPEEVECNKFGNWSAQ-PSCKA 656
++TL GP +VEC+ G W+ Q P CKA
Sbjct: 346 SFTLQGPAQVECSAQGQWTPQIPVCKA 372
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 2/163 (1%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKPLAG 353
G ++C+ G+ +G RR C G W + G
Sbjct: 399 GSSCEFSCEEGFELKGS-RRLQCGPRGEWDSKKPTCSAVKCDDVPRPQNGVMECAHATTG 457
Query: 354 NNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPA 530
+ Y F+C ++ G+ + CT G WT E+P C+ V+CP P G +N
Sbjct: 458 EFT-YKSSCAFQCNEGFSLHGSAQLECTSQGKWTQEVPSCQVVQCPSLDVP--GKMNMSC 514
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKA 656
+ + C D +TL+G + C G WS P+C+A
Sbjct: 515 SGTAVFGTVCEFTCPDDWTLNGSAVLTCGATGRWSGMPPTCEA 557
Score = 55.8 bits (133), Expect = 4e-08
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 4/169 (2%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
SY + C GY R G + C +G+W T +S
Sbjct: 269 SYPWNTTCTFDCVEGY-RRVGAQNLQCTSSGIWDNETPSCKAVTCDAIPQPQNGFVSCSH 327
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFV 518
AG + + F C + G + C+ G WT ++P CK V+C S P+ G +
Sbjct: 328 STAGELA-FKSSCNFTCEQSFTLQGPAQVECSAQGQWTPQIPVCKAVQCEALSAPQQGNM 386
Query: 519 NYPAKQVLYYQDKAT--YGCHDTYTLDGPEEVECNKFGNW-SAQPSCKA 656
+Q+ ++ + C + + L G ++C G W S +P+C A
Sbjct: 387 KCLPSASGPFQNGSSCEFSCEEGFELKGSRRLQCGPRGEWDSKKPTCSA 435
>ref|NP_073725.2| sushi, von Willebrand factor type A, EGF and pentraxin
domain-containing protein 1 precursor [Mus musculus].
Length = 3567
Score = 70.1 bits (170), Expect = 2e-12
Identities = 39/97 (40%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PECKEVKCPFPSRPENGFVNYPAKQVLY 545
G F C H + G TITC E G W L P C+ + C P PENG V+ A
Sbjct: 1807 GTAVTFSCDEGHELVGVSTITCLETGEWDRLRPSCEAISCGVPPVPENGGVDGSA---FT 1863
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
Y K Y C YTL G EE C G+WS + P C+
Sbjct: 1864 YGSKVVYRCDKGYTLSGDEESACLASGSWSHSSPVCE 1900
Score = 65.9 bits (159), Expect = 4e-11
Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 2/184 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP P +PF V + + G + Y C G+ RG +C W
Sbjct: 2380 CPSPPLIPFGVPASSGALHF-GSTVKYLCVDGFFLRGS-PTILCQADSTWSSPLPECVPV 2437
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPE 467
+ V Y ++ C P + GN T C E+G W P
Sbjct: 2438 ECPQPEEILNGIIHV------QGLAYLSTTLYTCKPGFELVGNATTLCGENGQWLGGKPM 2491
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-P 644
CK ++CP P NG + + Q Y TY C + L+GP+ + C + G+W P
Sbjct: 2492 CKPIECPEPKEILNGQFSSVSFQ---YGQTITYFCDRGFRLEGPKSLTCLETGDWDMDPP 2548
Query: 645 SCKA 656
SC A
Sbjct: 2549 SCDA 2552
Score = 65.9 bits (159), Expect = 4e-11
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 2/195 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C P E P V ++ P ++++C GY G C G W N
Sbjct: 3295 CETPAEFPNGKAVLENTTSGPS--LLFSCHRGYTLEGSPEAH-CTANGTW--NHLTPLCK 3349
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PE 467
+ +V L+ +C + GNG ITC+ WT
Sbjct: 3350 PNPCPVPFVIPENAV---LSEKEFYVDQNVSIKCREGFLLKGNGVITCSPDETWTHTNAR 3406
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQP 644
C+++ C PS EN A+ V Y Y D TY C+ Y L+G C + G W+ P
Sbjct: 3407 CEKISCGPPSHVENAI----ARGVYYQYGDMITYSCYSGYMLEGSLRSVCLENGTWTPSP 3462
Query: 645 SCKASCKLSVKRATV 689
C+A C+ + V
Sbjct: 3463 VCRAVCRFPCQNGGV 3477
Score = 63.2 bits (152), Expect = 3e-10
Identities = 59/218 (27%), Positives = 83/218 (38%), Gaps = 4/218 (1%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
TC P +LP P S+ G I Y C GY G R P G W ++
Sbjct: 2945 TCGPPADLPQGF--PNGFSFYHGGHIQYQCFTGYKLHGNPSRRCLP-NGSWSGSSPSCLP 3001
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAV-FECLPQHAMFGNGTITCTEHGNWTELP 464
+ + L GK V EC + G ITC +G W+++P
Sbjct: 3002 CRCSTPI--------IQQGTINATDLGCGKTVQIECFKGFKLLGLSEITCDANGQWSDVP 3053
Query: 465 ECKEVKC-PFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-A 638
C+ +C P P+ P N V + L + TY C YT+ G ++ C + WS
Sbjct: 3054 LCEHAQCGPLPTIP-NAIV---LEGSLSEDNVVTYSCRPGYTMQGSSDLICTEKAIWSQP 3109
Query: 639 QPSCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
P+C+ SC A + GE + K K L G
Sbjct: 3110 YPTCEPLSCGPPPTVANAVATGEAHTYESKVKLRCLEG 3147
Score = 62.8 bits (151), Expect = 4e-10
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 3/169 (1%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y G + ++C G+ G+ C TG W +
Sbjct: 1804 YTVGTAVTFSCDEGH-ELVGVSTITCLETGEWD------RLRPSCEAISCGVPPVPENGG 1856
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL-PECKEVKCPFPSRPENGFVN 521
+ G+ YG K V+ C + + G+ C G+W+ P C+ VKC P NG
Sbjct: 1857 VDGSAFTYGSKVVYRCDKGYTLSGDEESACLASGSWSHSSPVCELVKCSQPEDINNGKYI 1916
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK-ASC 662
L Y A+Y C + Y+L GP +EC G+W A PSC+ SC
Sbjct: 1917 LSG---LTYLSIASYSCENGYSLQGPSLLECTASGSWDRAPPSCQLVSC 1962
Score = 60.5 bits (145), Expect = 2e-09
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGF 515
+P +GN G K C P M GN C G WT+ LP C+ ++C P ENGF
Sbjct: 1641 RPASGNRKP-GSKVSLFCDPGFQMVGNPVQYCLNQGQWTQPLPHCERIRCGLPPALENGF 1699
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
Y A+ + TY C Y L G + C G+W+ PSC
Sbjct: 1700 --YSAED-FHAGSTVTYQCTSGYYLLGDSRMFCTDNGSWNGISPSC 1742
Score = 57.8 bits (138), Expect = 1e-08
Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW--PINTXXXXXXXXXXXXXXXFA 323
P ++Y+ G + Y+C G+ +G ++ C TG W P T F
Sbjct: 2156 PSGTNYSFGAVVAYSCHKGFYIKGE-KKSTCEATGQWSKPTPTCHPVSCNEPPKVENGFL 2214
Query: 324 KLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELP-ECKEVKCPFPS 497
+ + + + +A F+C P + G+ C + +W ++ P C + C P
Sbjct: 2215 EHTTGRT-------FESEARFQCNPGYKAAGSPVFVCQANRHWHSDAPLSCTPLNCGKPP 2267
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCK 653
+NGF+ + +V K + C++ Y L G C K G WS +PS K
Sbjct: 2268 PIQNGFLKGESFEV---GSKVQFVCNEGYELVGDNSWTCQKSGKWSKKPSPK 2316
Score = 57.8 bits (138), Expect = 1e-08
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 2/150 (1%)
Frame = +3
Query: 363 LYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQV 539
LYG + C P + + G + C E G W P C ++C P PENGF+++ +
Sbjct: 2673 LYGTMVSYSCEPGYELLGIPVLICQEDGTWNGTAPSCISIECDLPVAPENGFLHFTQTTM 2732
Query: 540 LYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEGERVNI 716
A Y C + L+G C + WS P C+A +S + ++ G +
Sbjct: 2733 ---GSAAQYSCKPGHILEGSHLRLCLQNKQWSGTVPRCEA---ISCSKPNPLWNGS-IKG 2785
Query: 717 QDKFKNGMLHGQKISFFCRNKEKKCSYTED 806
D G+L+ + S + N KK + E+
Sbjct: 2786 DDYSYLGVLYYECDSGYILNGSKKRTCQEN 2815
Score = 57.8 bits (138), Expect = 1e-08
Identities = 54/190 (28%), Positives = 74/190 (38%), Gaps = 4/190 (2%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y +EI Y+C+ G++ G R IC G W T A V
Sbjct: 2846 YTFQKEITYSCREGFILEGARSR-ICLTNGSWSGATPSCMPVRCP-------APPQVPNG 2897
Query: 345 LAGNNSLYGGK--AVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGF 515
+A YG K F CL + + G +TC +G W E+P CK C P+ GF
Sbjct: 2898 VADGLD-YGFKKEVAFHCLEGYVLQGAPRLTCQSNGTWDAEVPVCKPATCGPPADLPQGF 2956
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKASCKLSVKRATVI 692
N + Y+ Y C Y L G C G+WS + PSC L + +T I
Sbjct: 2957 PNGFS---FYHGGHIQYQCFTGYKLHGNPSRRCLPNGSWSGSSPSC-----LPCRCSTPI 3008
Query: 693 YEGERVNIQD 722
+ +N D
Sbjct: 3009 IQQGTINATD 3018
Score = 57.4 bits (137), Expect = 2e-08
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +3
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVN 521
+ GN +G V++C P + + GN C E+ W+ E+ C+E +C P+ NG
Sbjct: 3248 VVGNKHSFGSTIVYQCDPGYKLEGNRERICQENRQWSGEVAVCRENRCETPAEFPNG--- 3304
Query: 522 YPAKQVLYYQDKAT---YGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
K VL + CH YTL+G E C G W+ P CK
Sbjct: 3305 ---KAVLENTTSGPSLLFSCHRGYTLEGSPEAHCTANGTWNHLTPLCK 3349
Score = 55.1 bits (131), Expect = 7e-08
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 9/168 (5%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP--- 344
G Y+C+PG++ G R +C W +S KP
Sbjct: 2733 GSAAQYSCKPGHILEGSHLR-LCLQNKQWSGTVPRCEA-------------ISCSKPNPL 2778
Query: 345 ----LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPEN 509
+ G++ Y G +EC + + G+ TC E+ +W P C V C P P N
Sbjct: 2779 WNGSIKGDDYSYLGVLYYECDSGYILNGSKKRTCQENRDWDGHEPMCIPVDCGSPPVPTN 2838
Query: 510 GFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
G V + +Q + TY C + + L+G C G+WS A PSC
Sbjct: 2839 GRVK---GEEYTFQKEITYSCREGFILEGARSRICLTNGSWSGATPSC 2883
Score = 54.3 bits (129), Expect = 1e-07
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 15/199 (7%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP P ++P V L Y +E+ + C GYV +G R C G W
Sbjct: 2888 CPAPPQVPNGVADGL--DYGFKKEVAFHCLEGYVLQGA-PRLTCQSNGTWD--------- 2935
Query: 291 XXXXXXXXXFAKLSVYKPLA-------------GNNSLYGGKAVFECLPQHAMFGNGTIT 431
A++ V KP G + +GG ++C + + GN +
Sbjct: 2936 ----------AEVPVCKPATCGPPADLPQGFPNGFSFYHGGHIQYQCFTGYKLHGNPSRR 2985
Query: 432 CTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEV 608
C +G+W+ P C +C P + G +N L C + L G E+
Sbjct: 2986 CLPNGSWSGSSPSCLPCRCSTPI-IQQGTIN---ATDLGCGKTVQIECFKGFKLLGLSEI 3041
Query: 609 ECNKFGNWSAQPSCK-ASC 662
C+ G WS P C+ A C
Sbjct: 3042 TCDANGQWSDVPLCEHAQC 3060
Score = 53.9 bits (128), Expect = 2e-07
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 10/168 (5%)
Frame = +3
Query: 180 EIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP----- 344
E + C PGY + G F+C W + L+ KP
Sbjct: 2225 EARFQCNPGYKAAGS-PVFVCQANRHWHSDAPLSC------------TPLNCGKPPPIQN 2271
Query: 345 --LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP--ECKEVKCPFPSRPENG 512
L G + G K F C + + G+ + TC + G W++ P +C KC P EN
Sbjct: 2272 GFLKGESFEVGSKVQFVCNEGYELVGDNSWTCQKSGKWSKKPSPKCVPTKCAEPPLLENQ 2331
Query: 513 FVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCK 653
V K++ T C + + L GP ++C G W+ P CK
Sbjct: 2332 LV---LKELASEVGVMTISCKEGHALQGPSVLKCLPSGQWNGSFPICK 2376
Score = 53.5 bits (127), Expect = 2e-07
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 5/184 (2%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C +P + AV+ S++ G + YTC+ GY + G +C G W +
Sbjct: 1961 SCGEPPIVKDAVITG--SNFTFGNTVAYTCKEGY-TLAGPDTIVCQANGKWNSSNHQCLA 2017
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE--- 458
A + L+G A + C +++ N + C GNW
Sbjct: 2018 VSCDEPPNVDHASPETA------HRLFGDTAFYYCADGYSLADNSQLICNAQGNWVPPAG 2071
Query: 459 --LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW 632
+P C C P + +K ++ C + + L+ ++EC + G W
Sbjct: 2072 QAVPRCIAHFCEKPPSVSYSILESVSKAKFAAGSVVSFKCMEGFVLNTSAKIECLRGGEW 2131
Query: 633 SAQP 644
S P
Sbjct: 2132 SPSP 2135
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S + G + Y+C+PGY GI IC G W +
Sbjct: 2670 SHFLYGTMVSYSCEPGY-ELLGIPVLICQEDGTW-------------NGTAPSCISIECD 2715
Query: 339 KPLAGNN-------SLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFP 494
P+A N + G A + C P H + G+ C ++ W+ +P C+ + C P
Sbjct: 2716 LPVAPENGFLHFTQTTMGSAAQYSCKPGHILEGSHLRLCLQNKQWSGTVPRCEAISCSKP 2775
Query: 495 SRPENGFV---NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSC 650
+ NG + +Y VLYY+ C Y L+G ++ C + +W +P C
Sbjct: 2776 NPLWNGSIKGDDYSYLGVLYYE------CDSGYILNGSKKRTCQENRDWDGHEPMC 2825
Score = 51.2 bits (121), Expect = 1e-06
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 3/171 (1%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S++ G ++VY C GY G C +G W ++ K +
Sbjct: 1860 SAFTYGSKVVYRCDKGYTLSGD-EESACLASGSWSHSSPVCELVKCSQPEDINNGKYIL- 1917
Query: 339 KPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENGF 515
+ Y A + C +++ G + CT G+W P C+ V C P ++
Sbjct: 1918 -----SGLTYLSIASYSCENGYSLQGPSLLECTASGSWDRAPPSCQLVSCGEPPIVKDAV 1972
Query: 516 VNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKA-SC 662
+ + + Y C + YTL GP+ + C G W S+ C A SC
Sbjct: 1973 IT---GSNFTFGNTVAYTCKEGYTLAGPDTIVCQANGKWNSSNHQCLAVSC 2020
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +3
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENGFVN 521
+ G+N +G + C + + G TI C +G W +C V C P ++
Sbjct: 1973 ITGSNFTFGNTVAYTCKEGYTLAGPDTIVCQANGKWNSSNHQCLAVSCDEPPNVDHAS-- 2030
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW-----SAQPSCKA 656
P + D A Y C D Y+L ++ CN GNW A P C A
Sbjct: 2031 -PETAHRLFGDTAFYYCADGYSLADNSQLICNAQGNWVPPAGQAVPRCIA 2079
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 12/233 (5%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEE------IVYTCQPGYVSRGGIRRFICPLTGLWPIN 269
T P+ E + + PL + G++ + Y C GY+ G +R C W +
Sbjct: 2763 TVPRCEAISCSKPNPLWNGSIKGDDYSYLGVLYYECDSGYILNGSKKR-TCQENRDWDGH 2821
Query: 270 TXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGN 449
++ G + + + C + G + C +G+
Sbjct: 2822 EPMCIPVDCGSPPVPTNGRVK------GEEYTFQKEITYSCREGFILEGARSRICLTNGS 2875
Query: 450 WT-ELPECKEVKCPFPSRPENGFVNYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKF 623
W+ P C V+CP P + NG A + Y ++ + + C + Y L G + C
Sbjct: 2876 WSGATPSCMPVRCPAPPQVPNGV----ADGLDYGFKKEVAFHCLEGYVLQGAPRLTCQSN 2931
Query: 624 GNWSAQ-PSCK-ASCKLSVKRATVIYEGERVNIQDKFKNG--MLHGQKISFFC 770
G W A+ P CK A+C G ++ F NG HG I + C
Sbjct: 2932 GTWDAEVPVCKPATC------------GPPADLPQGFPNGFSFYHGGHIQYQC 2972
Score = 48.5 bits (114), Expect = 7e-06
Identities = 38/164 (23%), Positives = 58/164 (35%), Gaps = 5/164 (3%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLW-PINTXXXXXXXXXXXXXXXFAKLSVYKPLA 350
G+ Y C GY S + IC G W P S+ + ++
Sbjct: 2039 GDTAFYYCADGY-SLADNSQLICNAQGNWVPPAGQAVPRCIAHFCEKPPSVSYSILESVS 2097
Query: 351 GNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP---ECKEVKCPFPSRPENGFVN 521
G F+C+ + + I C G W+ P +C V+C P NG
Sbjct: 2098 KAKFAAGSVVSFKCMEGFVLNTSAKIECLRGGEWSPSPLSVQCIPVRCGEPPSIANG--- 2154
Query: 522 YPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
YP+ + Y CH + + G ++ C G WS P+C
Sbjct: 2155 YPSGTNYSFGAVVAYSCHKGFYIKGEKKSTCEATGQWSKPTPTC 2198
Score = 48.5 bits (114), Expect = 7e-06
Identities = 52/198 (26%), Positives = 71/198 (35%), Gaps = 4/198 (2%)
Frame = +3
Query: 81 LCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW 260
LC A G P P +P A+V L+ S + + Y+C+PGY +G IC +W
Sbjct: 3054 LCEHAQCG---PLPT-IPNAIV--LEGSLSEDNVVTYSCRPGYTMQGS-SDLICTEKAIW 3106
Query: 261 --PINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGN-GTIT 431
P T A G Y K CL + M + T T
Sbjct: 3107 SQPYPTCEPLSCGPPPTVANAVA--------TGEAHTYESKVKLRCLEGYVMDSDTDTFT 3158
Query: 432 CTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEV 608
C + G+W E C KCP PS + QV + + C + +T +G
Sbjct: 3159 CQQDGHWVPERITCSPKKCPVPSNMTRIRFHGDDFQV---NRQVSVSCAEGFTHEGVNWS 3215
Query: 609 ECNKFGNWSAQPSCKASC 662
C G W P SC
Sbjct: 3216 TCQPDGTWE-PPFSDESC 3232
>ref|NP_034018.2| complement factor H [Mus musculus].
Length = 1252
Score = 68.9 bits (167), Expect = 5e-12
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 6/236 (2%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
K SY GE++ + CQ Y G + + W ++
Sbjct: 1028 KKSYRTGEQVTFRCQSPYQMNGSDT--VTCVNSRWIGQPVCKDNSCVDPPHVPNATIVTR 1085
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFPSRPEN 509
K N L+G + +EC +FG + C E+G WTE P+C++ KC P +N
Sbjct: 1086 TK----NKYLHGDRVRYECNKPLELFGQVEVMC-ENGIWTEKPKCRDSTGKCGPPPPIDN 1140
Query: 510 GFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATV 689
G + + V Y C Y L G + + C G WS P+C +C +
Sbjct: 1141 GDITSLSLPVYEPLSSVEYQCQKYYLLKGKKTITCRN-GKWSEPPTCLHACVIPEN---- 1195
Query: 690 IYEGERVNIQDKFKNGML--HGQKISFFCRNKEKKC--SYTEDAQCIDGTIEIPKC 845
I E + ++ + + G+ I F C+ K S +CI+GTI P C
Sbjct: 1196 IMESHNIILKWRHTEKIYSHSGEDIEFGCKYGYYKARDSPPFRTKCINGTINYPTC 1251
Score = 66.2 bits (160), Expect = 3e-11
Identities = 48/186 (25%), Positives = 69/186 (37%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
G C P +P V SY GEE+ Y C G+ G FI G W
Sbjct: 951 GLPCGPPPSIPLGTVSLELESYQHGEEVTYHCSTGFGIDG--PAFIICEGGKW----SDP 1004
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL 461
K ++ + + + G + F C + M G+ T+TC + W
Sbjct: 1005 PKCIKTDCDVLPTVKNAIIRGKSKKSYRTGEQVTFRCQSPYQMNGSDTVTCV-NSRWIGQ 1063
Query: 462 PECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ 641
P CK+ C P N + K + D+ Y C+ L G EV C G W+ +
Sbjct: 1064 PVCKDNSCVDPPHVPNATIVTRTKNKYLHGDRVRYECNKPLELFGQVEVMCEN-GIWTEK 1122
Query: 642 PSCKAS 659
P C+ S
Sbjct: 1123 PKCRDS 1128
Score = 60.8 bits (146), Expect = 1e-09
Identities = 64/240 (26%), Positives = 92/240 (38%), Gaps = 8/240 (3%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGG-IRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
S YA E Y C+ GYV+ G I I L W
Sbjct: 483 SIYALNRETSYRCKQGYVTNTGEISGSITCLQNGWSPQPSCIKSCDMPVFENSITKNTRT 542
Query: 336 YKPLAGNNSLYGGKAVFECL---PQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSRPE 506
+ L K +ECL G+ITCT +G W++ P C E +C P+ +
Sbjct: 543 WFKL-------NDKLDYECLVGFENEYKHTKGSITCTYYG-WSDTPSCYERECSVPTL-D 593
Query: 507 NGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCK---ASCKLSVK 677
V P K+ D + CH + + GP+ V+C FG P+CK ASC ++
Sbjct: 594 RKLVVSPRKEKYRVGDLLEFSCHSGHRV-GPDSVQCYHFGWSPGFPTCKGQVASCAPPLE 652
Query: 678 RATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT-IEIPKCFKE 854
I GE I K HG+ + + C+ + QC+DG +P C +E
Sbjct: 653 ----ILNGE---INGAKKVEYSHGEVVKYDCKPR-FLLKGPNKIQCVDGNWTTLPVCIEE 704
Score = 59.7 bits (143), Expect = 3e-09
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Frame = +3
Query: 366 YGGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLY 545
+G + + C + G I C E G W++ P+C + C +N + +K+
Sbjct: 974 HGEEVTYHCSTGFGIDGPAFIIC-EGGKWSDPPKCIKTDCDVLPTVKNAIIRGKSKKSYR 1032
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLS---VKRATVIYEGERVNI 716
++ T+ C Y ++G + V C W QP CK + + V AT++
Sbjct: 1033 TGEQVTFRCQSPYQMNGSDTVTCVN-SRWIGQPVCKDNSCVDPPHVPNATIV-------- 1083
Query: 717 QDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT-IEIPKC 845
+ KN LHG ++ + C NK + + C +G E PKC
Sbjct: 1084 -TRTKNKYLHGDRVRYEC-NKPLELFGQVEVMCENGIWTEKPKC 1125
Score = 57.0 bits (136), Expect = 2e-08
Identities = 54/186 (29%), Positives = 74/186 (39%), Gaps = 3/186 (1%)
Frame = +3
Query: 105 RTCPKPEELPFAVV-VPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
+ C P + PF + + S + G ++VYTC GY G I C G W IN
Sbjct: 101 KPCGHPGDTPFGSFRLAVGSQFEFGAKVVYTCDDGYQLLGEIDYRECGADG-W-INDIPL 158
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAV-FECLPQHAMFGNGTITCTEHGNWT- 455
V + Y G+ V FEC + G+ I C+E+G W+
Sbjct: 159 CEVVKCLPVTELENGRIVSGAAETDQEYYFGQVVRFECNSGFKIEGHKEIHCSENGLWSN 218
Query: 456 ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
E P C E+ C P R ENG K V ++ Y C Y + C G WS
Sbjct: 219 EKPRCVEILCT-PPRVENG-DGINVKPVYKENERYHYKCKHGYVPKERGDAVCTGSG-WS 275
Query: 636 AQPSCK 653
+QP C+
Sbjct: 276 SQPFCE 281
Score = 55.1 bits (131), Expect = 7e-08
Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 4/193 (2%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP 344
Y G + Y C+PGY + G I + +C G W + + ++
Sbjct: 60 YPEGTQATYKCRPGYRTLGTIVK-VCK-NGKW-VASNPSRICRKKPCGHPGDTPFGSFRL 116
Query: 345 LAGNNSLYGGKAVFECLPQHAMFGNGTIT-CTEHGNWTELPECKEVKCPFPSRPENGFVN 521
G+ +G K V+ C + + G C G ++P C+ VKC + ENG +
Sbjct: 117 AVGSQFEFGAKVVYTCDDGYQLLGEIDYRECGADGWINDIPLCEVVKCLPVTELENGRIV 176
Query: 522 YPAK---QVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVI 692
A Q Y+ + C+ + ++G +E+ C++ G WS + K C + +
Sbjct: 177 SGAAETDQEYYFGQVVRFECNSGFKIEGHKEIHCSENGLWSNE---KPRCVEILCTPPRV 233
Query: 693 YEGERVNIQDKFK 731
G+ +N++ +K
Sbjct: 234 ENGDGINVKPVYK 246
>ref|NP_035477.1| P-selectin [Mus musculus].
Length = 768
Score = 68.9 bits (167), Expect = 5e-12
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Frame = +3
Query: 180 EIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNN 359
+ ++C GY G C +G+W N ++ P+A
Sbjct: 225 QCTFSCAEGY-ELDGPGELQCLASGIWTNNPPKCDAVQCQSLEAPPHGTMACMHPIAA-- 281
Query: 360 SLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVN-YPAK 533
Y FEC P + G+ T+ CT G W+E LP C+ + C P P +G ++ P+
Sbjct: 282 FAYDSSCKFECQPGYRARGSNTLHCTGSGQWSEPLPTCEAIACEPPEIPIHGSMDCVPST 341
Query: 534 QVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSCKA 656
Y T+ C + + L G + ++C G W+A P C+A
Sbjct: 342 GTFGYNSSCTFLCAEGFVLKGNDAIQCADSGQWTAPAPFCEA 383
Score = 59.3 bits (142), Expect = 4e-09
Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 8/241 (3%)
Frame = +3
Query: 117 KPEELPF---AVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+P E+P VP ++ + C G+V +G C +G W
Sbjct: 325 EPPEIPIHGSMDCVPSTGTFGYNSSCTFLCAEGFVLKGN-DAIQCADSGQWTAPAPFCEA 383
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELP- 464
A+++ P Y F C + G I C G+W P
Sbjct: 384 LQCPEFPVPSKAQVNCSDPFG--TLTYQSVCSFSCDEGSLLVGASVIRCLATGHWNGAPP 441
Query: 465 ECKEVKCPFPSRPENGFVNYPAKQVL---YYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
EC+ V C PENG + Q L Y+ + C + + L GPE ++C+ G+W+
Sbjct: 442 ECQAVSCAPMLSPENGSMT--CVQPLGNSTYKSTCQFMCDEGFYLSGPERLDCSPSGHWT 499
Query: 636 -AQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQ 812
P+C+A + I+ E+ N+ +G I F N++ + +E+ +
Sbjct: 500 GTPPTCEAI------KCPGIFAPEQGNLDCSHVHGEFGVGSICHFSCNEDFELLGSENVE 553
Query: 813 C 815
C
Sbjct: 554 C 554
Score = 56.6 bits (135), Expect = 3e-08
Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 4/194 (2%)
Frame = +3
Query: 93 AIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINT 272
A+ ++ P A + P+ +++A + CQPGY +RG C +G W
Sbjct: 259 AVQCQSLEAPPHGTMACMHPI-AAFAYDSSCKFECQPGYRARGS-NTLHCTGSGQWSEPL 316
Query: 273 XXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW 452
+ P G Y F C + GN I C + G W
Sbjct: 317 PTCEAIACEPPEIPIHGSMDCV-PSTGTFG-YNSSCTFLCAEGFVLKGNDAIQCADSGQW 374
Query: 453 T-ELPECKEVKCPFPSRPENGFVNYPAK-QVLYYQDKATYGCHDTYTLDGPEEVECNKFG 626
T P C+ ++CP P VN L YQ ++ C + L G + C G
Sbjct: 375 TAPAPFCEALQCPEFPVPSKAQVNCSDPFGTLTYQSVCSFSCDEGSLLVGASVIRCLATG 434
Query: 627 NWS-AQPSCKA-SC 662
+W+ A P C+A SC
Sbjct: 435 HWNGAPPECQAVSC 448
Score = 52.8 bits (125), Expect = 4e-07
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +3
Query: 357 NSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPSRPENGFVNYPAK 533
NS Y F C + G + C+ G+WT P C+ +KCP PE G N
Sbjct: 467 NSTYKSTCQFMCDEGFYLSGPERLDCSPSGHWTGTPPTCEAIKCPGIFAPEQG--NLDCS 524
Query: 534 QV---LYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSCKASCKL 668
V + C++ + L G E VEC G WSA P+CK L
Sbjct: 525 HVHGEFGVGSICHFSCNEDFELLGSENVECTVSGRWSAPPPTCKGITSL 573
>ref|NP_001153775.1| complement factor H-related protein C isoform 2 [Mus musculus].
Length = 878
Score = 64.7 bits (156), Expect = 9e-11
Identities = 64/254 (25%), Positives = 94/254 (37%), Gaps = 6/254 (2%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
G C P +P V SY GEE+ Y C G+ G I G W
Sbjct: 636 GLPCGPPPSIPLGTVSLELESYQHGEEVTYHCSTGFGIDGPA--LIKCEGGKWS----DP 689
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL 461
+ ++ + + G + C + M G+ T+TC +G W
Sbjct: 690 PKCIKTDCDILPTIENAIIRGKNKKSYRTGEQVTVRCQSPYQMNGSDTVTCI-NGRWIGK 748
Query: 462 PECKEV--KCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
P CK+ KC P +NG + + Y C Y L G + + C G WS
Sbjct: 749 PVCKDSRGKCGPPPPIDNGDITSLSLPEYEPFSSVDYQCQKYYLLKGKKTITCRN-GKWS 807
Query: 636 AQPSCKASCKLSVKRATVIYEGERVNIQDKF-KNGMLH-GQKISFFCRNKEKKC--SYTE 803
P+C +C + I E ++ ++ + KN H G+ I F C+ K S
Sbjct: 808 EPPTCLHACIIPEN----IMEARKIILKWRHTKNIYSHSGEDIEFECKYGYHKARGSPPF 863
Query: 804 DAQCIDGTIEIPKC 845
+CI GTI P C
Sbjct: 864 RTKCISGTINYPIC 877
Score = 57.0 bits (136), Expect = 2e-08
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 9/240 (3%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRR--FICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+YA E Y C+ GYV+ G C G P + SV
Sbjct: 169 TYALNRETSYRCKQGYVTNTGETSGSITCLQNGWSPQPSCIKSCERPVFEN-------SV 221
Query: 336 YKPLAGNNSLY---GGKAVFECL---PQHAMFGNGTITCTEHGNWTELPECKEVKCPFPS 497
K NNS + K +ECL G+ITCT +G W++ P C E++C P
Sbjct: 222 TK----NNSTWFKLNDKLDYECLIGYENEYKHTKGSITCTYYG-WSDTPSCYEIECSVPI 276
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVK 677
V+ P K+ D + C + + GP+ V+C FG + P+CK S
Sbjct: 277 LDRKLVVS-PRKEKYRVGDLLEFSCRSGHRV-GPDSVQCYHFGWSPSFPTCKGQV-ASCA 333
Query: 678 RATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT-IEIPKCFKE 854
+ I GE I + HG+ + + C+ + QC+DG +P C +E
Sbjct: 334 QPPEIPNGE---INGAKRVEYSHGEVVGYDCKPR-FLLKGPNKIQCVDGMWTTLPVCVEE 389
Score = 52.0 bits (123), Expect = 6e-07
Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 9/266 (3%)
Frame = +3
Query: 84 CHAAIAGRTCPKPEELPFAVVVPLKS-SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW 260
C +A +C +P E+P + K Y+ GE + Y C+P ++ +G + I + G+W
Sbjct: 325 CKGQVA--SCAQPPEIPNGEINGAKRVEYSHGEVVGYDCKPRFLLKGPNK--IQCVDGMW 380
Query: 261 ---PINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTIT 431
P+ K SV P +G F C M G G++
Sbjct: 381 TTLPVCVEEERTCGDIPELEHGSVKFSV-PPYH-----HGDSVEFTCAETFTMIGLGSVF 434
Query: 432 CTEHGNWTELPECKEV----KCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGP 599
C G WT+LP+C KC + + P ++ + Y C D +
Sbjct: 435 CLS-GKWTQLPKCVATDQLEKCRVLKSTDIEAIK-PKRKEFQHNSTMYYKCRDKQEYEHS 492
Query: 600 EEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNK 779
+ G W+ +P+C K+S I + + K+ L G+K+S C++
Sbjct: 493 ICIN----GKWNPEPNCIR--KISCPPPPQIPNTQVIETTVKY----LDGEKLSVLCQD- 541
Query: 780 EKKCSYTEDAQCIDGTIE-IPKCFKE 854
E+ C DG + +P C ++
Sbjct: 542 NYLTQDPEEMMCKDGRWQSLPHCIEK 567
>ref|NP_001025148.3| complement factor H-related protein C isoform 1 [Mus musculus].
Length = 879
Score = 64.7 bits (156), Expect = 9e-11
Identities = 64/254 (25%), Positives = 94/254 (37%), Gaps = 6/254 (2%)
Frame = +3
Query: 102 GRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXX 281
G C P +P V SY GEE+ Y C G+ G I G W
Sbjct: 637 GLPCGPPPSIPLGTVSLELESYQHGEEVTYHCSTGFGIDGPA--LIKCEGGKWS----DP 690
Query: 282 XXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL 461
+ ++ + + G + C + M G+ T+TC +G W
Sbjct: 691 PKCIKTDCDILPTIENAIIRGKNKKSYRTGEQVTVRCQSPYQMNGSDTVTCI-NGRWIGK 749
Query: 462 PECKEV--KCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
P CK+ KC P +NG + + Y C Y L G + + C G WS
Sbjct: 750 PVCKDSRGKCGPPPPIDNGDITSLSLPEYEPFSSVDYQCQKYYLLKGKKTITCRN-GKWS 808
Query: 636 AQPSCKASCKLSVKRATVIYEGERVNIQDKF-KNGMLH-GQKISFFCRNKEKKC--SYTE 803
P+C +C + I E ++ ++ + KN H G+ I F C+ K S
Sbjct: 809 EPPTCLHACIIPEN----IMEARKIILKWRHTKNIYSHSGEDIEFECKYGYHKARGSPPF 864
Query: 804 DAQCIDGTIEIPKC 845
+CI GTI P C
Sbjct: 865 RTKCISGTINYPIC 878
Score = 61.6 bits (148), Expect = 8e-10
Identities = 64/240 (26%), Positives = 95/240 (39%), Gaps = 9/240 (3%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRR--FICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
+YA E Y C+ GYV+ G C G P + SV
Sbjct: 169 TYALNRETSYRCKQGYVTNTGETSGSITCLQNGWSPQPSCIKSCERPVFEN-------SV 221
Query: 336 YKPLAGNNSLY---GGKAVFECL---PQHAMFGNGTITCTEHGNWTELPECKEVKCPFPS 497
K NNS + K +ECL G+ITCT +G W++ P C E++C P
Sbjct: 222 TK----NNSTWFKLNDKLDYECLIGYENEYKHTKGSITCTYYG-WSDTPSCYEIECSVPI 276
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVK 677
V+ P K+ D + C + + GP+ V+C FG + P+CKA S
Sbjct: 277 LDRKLVVS-PRKEKYRVGDLLEFSCRSGHRV-GPDSVQCYHFGWSPSFPTCKAGQVASCA 334
Query: 678 RATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTEDAQCIDGT-IEIPKCFKE 854
+ I GE I + HG+ + + C+ + QC+DG +P C +E
Sbjct: 335 QPPEIPNGE---INGAKRVEYSHGEVVGYDCKPR-FLLKGPNKIQCVDGMWTTLPVCVEE 390
Score = 51.6 bits (122), Expect = 8e-07
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 9/258 (3%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKS-SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW---PINTX 275
+C +P E+P + K Y+ GE + Y C+P ++ +G + I + G+W P+
Sbjct: 332 SCAQPPEIPNGEINGAKRVEYSHGEVVGYDCKPRFLLKGPNK--IQCVDGMWTTLPVCVE 389
Query: 276 XXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT 455
K SV P +G F C M G G++ C G WT
Sbjct: 390 EERTCGDIPELEHGSVKFSV-PPYH-----HGDSVEFTCAETFTMIGLGSVFCLS-GKWT 442
Query: 456 ELPECKEV----KCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKF 623
+LP+C KC + + P ++ + Y C D + +
Sbjct: 443 QLPKCVATDQLEKCRVLKSTDIEAIK-PKRKEFQHNSTMYYKCRDKQEYEHSICIN---- 497
Query: 624 GNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKCSYTE 803
G W+ +P+C K+S I + + K+ L G+K+S C++ E
Sbjct: 498 GKWNPEPNCIR--KISCPPPPQIPNTQVIETTVKY----LDGEKLSVLCQD-NYLTQDPE 550
Query: 804 DAQCIDGTIE-IPKCFKE 854
+ C DG + +P C ++
Sbjct: 551 EMMCKDGRWQSLPHCIEK 568
>ref|XP_003085377.1| PREDICTED: complement factor H [Mus musculus].
Length = 332
Score = 62.0 bits (149), Expect = 6e-10
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Frame = +3
Query: 354 NNSLYGGKAVFECLPQHAMFGNGTI-TCTEHGNWTELPECKEV----KCPFPSRPENGFV 518
NN + G +C +++ + I TCTE+G W+ P+C + KC P +NG +
Sbjct: 165 NNYVQGQSVKVQCYNGYSLQNDQDIMTCTENG-WSPPPKCIRINPTGKCGPPPPIDNGDI 223
Query: 519 NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYE 698
+ V Y C Y L G + + C G WS P+C ++C +S
Sbjct: 224 TSLSLPVYASLSSVEYQCQKYYLLKGSKTITCRN-GTWSEPPTCLSACIISEDIL----- 277
Query: 699 GERVNIQDKFKNGM----LHGQKISFFCR--NKEKKCSYTEDAQCIDGTIEIPKC 845
ER NI K+K G I F C+ ++ + S + A+C++G I P C
Sbjct: 278 -ERHNILLKWKQSQKVYSQSGDVIEFVCKPGYRQARKSPSFRAKCMNGDINYPTC 331
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,979,440
Number of extensions: 908919
Number of successful extensions: 3309
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 86
Length of query: 304
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 203
Effective length of database: 12,583,923
Effective search space: 2554536369
Effective search space used: 2554536369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000033.2| beta-2-glycoprotein 1 precursor [Homo sapiens]. 450 e-127
Alignment gi|NP_000177.2| complement factor H isoform a precursor [Homo s... 76 4e-14
Alignment gi|NP_002104.2| complement factor H-related protein 1 precursor... 75 8e-14
Alignment gi|NP_001985.2| coagulation factor XIII B chain precursor [Homo... 67 3e-11
Alignment gi|NP_699197.3| sushi, von Willebrand factor type A, EGF and pe... 65 9e-11
Alignment gi|NP_001014975.1| complement factor H isoform b precursor [Hom... 65 1e-10
Alignment gi|NP_000441.2| E-selectin precursor [Homo sapiens]. 64 1e-10
Alignment gi|NP_006675.2| complement factor H-related protein 4 isoform 3... 64 2e-10
Alignment gi|NP_001188480.1| complement factor H-related protein 4 isofor... 64 2e-10
Alignment gi|NP_001188479.1| complement factor H-related protein 4 isofor... 64 2e-10
>ref|NP_000033.2| beta-2-glycoprotein 1 precursor [Homo sapiens].
Length = 345
Score = 450 bits (1158), Expect = e-127
Identities = 214/345 (62%), Positives = 241/345 (69%), Gaps = 58/345 (16%)
Frame = +3
Query: 45 MIPPVLIFFLSFLCHAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGG 224
MI PVLI F SFLCH AIAGRTCPKP++LPF+ VVPLK+ Y PGEEI Y+C+PGYVSRGG
Sbjct: 1 MISPVLILFSSFLCHVAIAGRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGG 60
Query: 225 IRRF------------------ICPLTGL------------------------------- 257
+R+F +CP G+
Sbjct: 61 MRKFICPLTGLWPINTLKCTPRVCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGAD 120
Query: 258 ---------WPINTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAM 410
W FA L VYKP AGNNSLY AVFECLPQHAM
Sbjct: 121 SAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAM 180
Query: 411 FGNGTITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTL 590
FGN TITCT HGNWT+LPEC+EVKCPFPSRP+NGFVNYPAK LYY+DKAT+GCHD Y+L
Sbjct: 181 FGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSL 240
Query: 591 DGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFC 770
DGPEE+EC K GNWSA PSCKASCK+ VK+ATV+Y+GERV IQ+KFKNGMLHG K+SFFC
Sbjct: 241 DGPEEIECTKLGNWSAMPSCKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFC 300
Query: 771 RNKEKKCSYTEDAQCIDGTIEIPKCFKEHSALAFWKTDASNVKPC 905
+NKEKKCSYTEDAQCIDGTIE+PKCFKEHS+LAFWKTDAS+VKPC
Sbjct: 301 KNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDASDVKPC 345
>ref|NP_000177.2| complement factor H isoform a precursor [Homo sapiens].
Length = 1231
Score = 76.3 bits (186), Expect = 4e-14
Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 8/240 (3%)
Frame = +3
Query: 156 KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSV 335
K Y GE++ YTC Y G C IN+ +
Sbjct: 1005 KDVYKAGEQVTYTCAT-YYKMDGASNVTC-------INSRWTGRPTCRDTSCVNPPTVQN 1056
Query: 336 YKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFPSRP 503
++ S Y G + ++C + MFG+ + C +GNWTE P+CK+ KC P
Sbjct: 1057 AYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWTEPPQCKDSTGKCGPPPPI 1115
Query: 504 ENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRA 683
+NG + V Y C + Y L+G + + C G WS P C C +S +
Sbjct: 1116 DNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRN-GQWSEPPKCLHPCVISRE-- 1172
Query: 684 TVIYEGERVNIQDKFKNGMLH--GQKISFFCRN--KEKKCSYTEDAQCIDGTIEIPKCFK 851
I E + ++ K + G+ + F C+ + S+T C DG +E P C K
Sbjct: 1173 --IMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 1230
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
+Y G + +Y C+PGY S G + +C G W + +
Sbjct: 41 TYPEGTQAIYKCRPGYRSLGNV-IMVC-RKGEW-VALNPLRKCQKRPCGHPGDTPFGTFT 97
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFV 518
GN YG KAV+ C + + G + WT ++P C+ VKC + PENG +
Sbjct: 98 LTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKI 157
Query: 519 NYPAKQ---VLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSC-KASCK 665
A + ++ + C+ Y ++G EE+ C+ G WS + P C + SCK
Sbjct: 158 VSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCK 211
Score = 59.3 bits (142), Expect = 5e-09
Identities = 60/233 (25%), Positives = 90/233 (38%), Gaps = 7/233 (3%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGY--VSRGGIRRFICPLTGLWPINTXX 278
R C P+ V K Y GE + ++C+PG+ V ++ + L+ PI
Sbjct: 567 RECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQ 626
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFE--CLPQHAMFGNGTITCTEHGNW 452
K + YG V E C P+ M G I C + G W
Sbjct: 627 VQSCGPPPELLNGNVKEKTKEE-------YGHSEVVEYYCNPRFLMKGPNKIQCVD-GEW 678
Query: 453 TELPEC--KEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFG 626
T LP C +E C E+G+ + YY D + C +++T+ G + C G
Sbjct: 679 TTLPVCIVEESTCGDIPELEHGWAQLSSPPY-YYGDSVEFNCSESFTMIGHRSITC-IHG 736
Query: 627 NWSAQPSCKASCKL-SVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRNKE 782
W+ P C A KL K + +I E + + +F H I + CR KE
Sbjct: 737 VWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFD----HNSNIRYRCRGKE 785
Score = 53.9 bits (128), Expect = 2e-07
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Frame = +3
Query: 420 GTITCTEHGNWTELPECKEVKCPFPSR-----PENGFVNYPAKQVLYYQDKATYGCHDTY 584
G+I C +G W++LP C E +C P P+ Y +VL + C +
Sbjct: 549 GSIVCGYNG-WSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVL------KFSCKPGF 601
Query: 585 TLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISF 764
T+ GP V+C FG P CK + S + G N+++K K H + + +
Sbjct: 602 TIVGPNSVQCYHFGLSPDLPICKEQVQ-SCGPPPELLNG---NVKEKTKEEYGHSEVVEY 657
Query: 765 FCRNKEKKCSYTEDAQCIDGT-IEIPKCFKEHS 860
+C N QC+DG +P C E S
Sbjct: 658 YC-NPRFLMKGPNKIQCVDGEWTTLPVCIVEES 689
Score = 53.1 bits (126), Expect = 3e-07
Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 15/254 (5%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSS---YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLW--PINTX 275
C +P ++ + +SS YA G ++ YTC+ G+ R G W P
Sbjct: 870 CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGF--RISEENETTCYMGKWSSPPQCE 927
Query: 276 XXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT 455
A +S ++ YG + ++C + G C W+
Sbjct: 928 GLPCKSPPEISHGVVAHMS-------DSYQYGEEVTYKCFEGFGIDGPAIAKCLGE-KWS 979
Query: 456 ELPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS 635
P C + C EN K V ++ TY C Y +DG V C W+
Sbjct: 980 HPPSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCIN-SRWT 1038
Query: 636 AQPSCK-ASC--KLSVKRATVIY-------EGERVNIQDKFKNGMLHGQKISFFCRNKEK 785
+P+C+ SC +V+ A ++ GERV Q + M +++ C N
Sbjct: 1039 GRPTCRDTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEV--MCLNG-- 1094
Query: 786 KCSYTEDAQCIDGT 827
++TE QC D T
Sbjct: 1095 --NWTEPPQCKDST 1106
Score = 52.4 bits (124), Expect = 6e-07
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Frame = +3
Query: 336 YKPLAGNNSLYGGKAVFECLPQHAM-FGNGTITCTEHGNWTELPECKEVKCPFPSRP--E 506
Y G + G C P +A+ T+TC E+G W+ P C VK S E
Sbjct: 398 YNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG-WSPTPRCIRVKTCSKSSIDIE 456
Query: 507 NGFVNYPAKQVLYYQDKATYGCHDTY-TLDGPEE--VECNKFGNWSAQPSCKASCKLSV 674
NGF++ ++ ++KA Y C Y T DG + C K G WSAQP+C SC + V
Sbjct: 457 NGFIS-ESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDG-WSAQPTCIKSCDIPV 513
Score = 49.3 bits (116), Expect = 5e-06
Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 10/191 (5%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYA---PGEEIVYTCQPGYVSRGGIRR--FICPLTGLW---P 263
TC K ++P + K+ + + + Y C GY S G +C G W P
Sbjct: 504 TCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNG-WSDLP 562
Query: 264 INTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEH 443
I K YK G F C P + G ++ C
Sbjct: 563 ICYERECELPKIDVHLVPDRKKDQYK--------VGEVLKFSCKPGFTIVGPNSVQCYHF 614
Query: 444 GNWTELPECKE--VKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECN 617
G +LP CKE C P NG V K+ + + Y C+ + + GP +++C
Sbjct: 615 GLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV 674
Query: 618 KFGNWSAQPSC 650
G W+ P C
Sbjct: 675 D-GEWTTLPVC 684
>ref|NP_002104.2| complement factor H-related protein 1 precursor [Homo sapiens].
Length = 330
Score = 75.1 bits (183), Expect = 8e-14
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 6/167 (3%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKEV--KCPFPSRPENGFVNYPAKQVL 542
G + +EC + MFG+ + C +GNWTE P+CK+ KC P +NG + V
Sbjct: 169 GERVRYECRSPYEMFGDEEVMCL-NGNWTEPPQCKDSTGKCGPPPPIDNGDITSFPLSVY 227
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQ- 719
Y C + Y L+G + + C G WS P C C +S + I E + ++
Sbjct: 228 APASSVEYQCQNLYQLEGNKRITCRN-GQWSEPPKCLHPCVISRE----IMENYNIALRW 282
Query: 720 -DKFKNGMLHGQKISFFCRN--KEKKCSYTEDAQCIDGTIEIPKCFK 851
K K + G+ F C+ + S+T C DG +E P C K
Sbjct: 283 TAKQKLYLRTGESAEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 329
>ref|NP_001985.2| coagulation factor XIII B chain precursor [Homo sapiens].
Length = 661
Score = 66.6 bits (161), Expect = 3e-11
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 6/170 (3%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKE--VKCPFPSRPENGFVNYPAKQVL 542
G K + C + + G+ ITC G WT PEC E C P NG V
Sbjct: 357 GDKVTYACKSGYLLHGSNEITCNR-GKWTLPPECVENNENCKHPPVVMNGAVADGILASY 415
Query: 543 YYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQD 722
Y C++ Y L G + C + G WS+ P C C ++V + ++
Sbjct: 416 ATGSSVEYRCNEYYLLRGSKISRCEQ-GKWSSPPVCLEPCTVNVD----YMNRNNIEMKW 470
Query: 723 KFKNGMLHGQKISFFCRNKEKKCSYTE----DAQCIDGTIEIPKCFKEHS 860
K++ +LHG I F C+ T QC G ++ P C ++ S
Sbjct: 471 KYEGKVLHGDLIDFVCKQGYDLSPLTPLSELSVQCNRGEVKYPLCTRKES 520
Score = 65.9 bits (159), Expect = 5e-11
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 6/173 (3%)
Frame = +3
Query: 150 PLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKL 329
P+K +Y G+ + + C Y G C G +P + L
Sbjct: 226 PVKQTYEEGDVVQFFCHENYYLSGS-DLIQCYNFGWYPESPVCEGRRNRCPPPP-----L 279
Query: 330 SVYKPLAGNNSLY--GGKAVFECLPQHAMFGNGTITCTEHGNWTELPECKE----VKCPF 491
+ + +++ Y G EC + G+ I C E G WTE P+C E V C
Sbjct: 280 PINSKIQTHSTTYRHGEIVHIECELNFEIHGSAEIRC-EDGKWTEPPKCIEGQEKVACEE 338
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSC 650
P ENG N +K + Y DK TY C Y L G E+ CN+ G W+ P C
Sbjct: 339 PPFIENGAANLHSK-IYYNGDKVTYACKSGYLLHGSNEITCNR-GKWTLPPEC 389
Score = 55.8 bits (133), Expect = 5e-08
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 18/168 (10%)
Frame = +3
Query: 375 KAVFECLPQHAMFGNGT---ITCTEHGNWTELPECKEVKCPFPSRPENGFVNYPAKQVLY 545
K +EC + G + C +G W+ P+C ++KC ENG+ +P KQ
Sbjct: 175 KVQYECATGYYTAGGKKTEEVECLTYG-WSLTPKCTKLKCSSLRLIENGYF-HPVKQTYE 232
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKA------------SCKLSVKRATV 689
D + CH+ Y L G + ++C FG + P C+ + K+ +T
Sbjct: 233 EGDVVQFFCHENYYLSGSDLIQCYNFGWYPESPVCEGRRNRCPPPPLPINSKIQT-HSTT 291
Query: 690 IYEGERVNIQDKFKNGMLHGQKISFFCRNKEKKC---SYTEDAQCIDG 824
GE V+I+ + N +HG + E +C +TE +CI+G
Sbjct: 292 YRHGEIVHIECEL-NFEIHG--------SAEIRCEDGKWTEPPKCIEG 330
>ref|NP_699197.3| sushi, von Willebrand factor type A, EGF and pentraxin
domain-containing protein 1 [Homo sapiens].
Length = 3571
Score = 65.1 bits (157), Expect = 9e-11
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 6/178 (3%)
Frame = +3
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFV 518
P+ + +G + C+ + GN T C G W+ LPEC V+CP P NG +
Sbjct: 2392 PIPSSALHFGSTVKYSCVGGFFLRGNSTTLCQPDGTWSSPLPECVPVECPQPEEIPNGII 2451
Query: 519 NYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKASCKLSVKRATVIY 695
+ Q L Y A Y C + L G C + G+W +P+CKA L K
Sbjct: 2452 DV---QGLAYLSTALYTCKPGFELVGNTTTLCGENGHWLGGKPTCKAIECLKPKEI---- 2504
Query: 696 EGERVNIQDKFKNGMLH-GQKISFFCRNKEKKCSYTEDAQCI---DGTIEIPKCFKEH 857
+ KF LH GQ +++ C N+ + C+ D ++ P C H
Sbjct: 2505 ------LNGKFSYTDLHYGQTVTYSC-NRGFRLEGPSALTCLETGDWDVDAPSCNAIH 2555
Score = 64.7 bits (156), Expect = 1e-10
Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Frame = +3
Query: 165 YAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAK-LSVYK 341
Y G E+ ++CQ GY G + + C +G W + K +S K
Sbjct: 1805 YTVGAEVTFSCQEGYQLMG-VTKITCLESGEW--------------NHLIPYCKAVSCGK 1849
Query: 342 PLAGNNSL-------YGGKAVFECLPQHAMFGNGTITCTEHGNWTELPE-CKEVKCPFPS 497
P N +G K + C + + G+ +C + +W+ P C+ VKC P
Sbjct: 1850 PAIPENGCIEELAFTFGSKVTYRCNKGYTLAGDKESSCLANSSWSHSPPVCEPVKCSSPE 1909
Query: 498 RPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
NG L Y A+Y C Y+L GP +EC G W A P+C
Sbjct: 1910 NINNGKYILSG---LTYLSTASYSCDTGYSLQGPSIIECTASGIWDRAPPAC 1958
Score = 63.9 bits (154), Expect = 2e-10
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = +3
Query: 354 NNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFVNYPA 530
+N LYG + C P + + GN + C E G W P C ++C P+ PENGF+ +
Sbjct: 2673 SNFLYGTMVSYTCNPGYELLGNPVLICQEDGTWNGSAPSCISIECDLPTAPENGFLRFTE 2732
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCKA-SCK 665
+ Y C + L G + C + WS A P C+A SCK
Sbjct: 2733 TSM---GSAVQYSCKPGHILAGSDLRLCLENRKWSGASPRCEAISCK 2776
Score = 62.0 bits (149), Expect = 7e-10
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 9/192 (4%)
Frame = +3
Query: 105 RTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXX 284
+ CP PE + +V ++ ++ +C GY G + +C L G W
Sbjct: 3179 KKCPLPENITHILVHG--DDFSVNRQVSVSCAEGYTFEG-VNISVCQLDGTWE------- 3228
Query: 285 XXXXXXXXXXXFAKLSVYKP-------LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEH 443
+ +S KP + G+ + +++C P + + GN C E+
Sbjct: 3229 ----PPFSDESCSPVSCGKPESPEHGFVVGSKYTFESTIIYQCEPGYELEGNRERVCQEN 3284
Query: 444 GNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNK 620
W+ + CKE +C P NG + + Y C+ Y+L+GP E C +
Sbjct: 3285 RQWSGGVAICKETRCETPLEFLNGKADIENRTT---GPNVVYSCNRGYSLEGPSEAHCTE 3341
Query: 621 FGNWS-AQPSCK 653
G WS P CK
Sbjct: 3342 NGTWSHPVPLCK 3353
Score = 61.6 bits (148), Expect = 9e-10
Identities = 55/227 (24%), Positives = 78/227 (34%), Gaps = 4/227 (1%)
Frame = +3
Query: 108 TCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
+C KPE VV S Y I+Y C+PGY G R +C W
Sbjct: 3240 SCGKPESPEHGFVVG--SKYTFESTIIYQCEPGYELEGNRER-VCQENRQWSGGVAICKE 3296
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
K + N G V+ C +++ G CTE+G W+ +P
Sbjct: 3297 TRCETPLEFLNGKADI------ENRTTGPNVVYSCNRGYSLEGPSEAHCTENGTWSHPVP 3350
Query: 465 ECKEVKCPFPSR-PENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-A 638
CK CP P PEN ++ ++ Y + C + + L G + CN W+
Sbjct: 3351 LCKPNPCPVPFVIPENALLS---EKEFYVDQNVSIKCREGFLLQGHGIITCNPDETWTQT 3407
Query: 639 QPSC-KASCKLSVKRATVIYEGERVNIQDKFKNGMLHGQKISFFCRN 776
C K SC I G D G + F R+
Sbjct: 3408 SAKCEKISCGPPAHVENAIARGVHYQYGDMITYSCYSGYMLEGFLRS 3454
Score = 60.1 bits (144), Expect = 3e-09
Identities = 53/216 (24%), Positives = 78/216 (36%), Gaps = 3/216 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
C PE+L P S+ G I Y C PGY G R C G W ++
Sbjct: 2949 CGPPEDLAHGF--PNGFSFIHGGHIQYQCFPGYKLHGNSSRR-CLSNGSWSGSSPSCLPC 3005
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPE 467
+ Y + G + G A +C + G ITC G W+ P
Sbjct: 3006 RCS-------TPVIEYGTVNGTDFDCGKAARIQCFKGFKLLGLSEITCEADGQWSSGFPH 3058
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQP 644
C+ C N F++ + + ++ TY C Y + G ++ C + G WS P
Sbjct: 3059 CEHTSCGSLPMIPNAFISETSS---WKENVITYSCRSGYVIQGSSDLICTEKGVWSQPYP 3115
Query: 645 SCK-ASCKLSVKRATVIYEGERVNIQDKFKNGMLHG 749
C+ SC A + GE + + K L G
Sbjct: 3116 VCEPLSCGSPPSVANAVATGEAHTYESEVKLRCLEG 3151
Score = 59.7 bits (143), Expect = 4e-09
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 5/169 (2%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLW--PINTXXXXXXXXXXXXXXXFAKLSVYKPL 347
G +VY+C GY S G C G W P+ L
Sbjct: 3318 GPNVVYSCNRGY-SLEGPSEAHCTENGTWSHPVPLCKPNPCPVPFVIPE--------NAL 3368
Query: 348 AGNNSLYGGKAV-FECLPQHAMFGNGTITCTEHGNWTELP-ECKEVKCPFPSRPENGFVN 521
Y + V +C + G+G ITC WT+ +C+++ C P+ EN
Sbjct: 3369 LSEKEFYVDQNVSIKCREGFLLQGHGIITCNPDETWTQTSAKCEKISCGPPAHVENAI-- 3426
Query: 522 YPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPSCKASCK 665
A+ V Y Y D TY C+ Y L+G C + G W++ P C+A C+
Sbjct: 3427 --ARGVHYQYGDMITYSCYSGYMLEGFLRSVCLENGTWTSPPICRAVCR 3473
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 10/168 (5%)
Frame = +3
Query: 180 EIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP----- 344
E+ Y C PGY S G F+C W + L KP
Sbjct: 2226 EVRYQCNPGYKSVGS-PVFVCQANRHWHSESPLMC------------VPLDCGKPPPIQN 2272
Query: 345 --LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTEL--PECKEVKCPFPSRPENG 512
+ G N G K F C + + G+ + TC + G W + P+C KCP P EN
Sbjct: 2273 GFMKGENFEVGSKVQFFCNEGYELVGDSSWTCQKSGKWNKKSNPKCMPAKCPEPPLLENQ 2332
Query: 513 FVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSCK 653
V K++ T+ C + + L GP ++C W+ + P CK
Sbjct: 2333 LV---LKELTTEVGVVTFSCKEGHVLQGPSVLKCLPSQQWNDSFPVCK 2377
Score = 57.8 bits (138), Expect = 1e-08
Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 4/224 (1%)
Frame = +3
Query: 111 CPKPEELPFAVVVPL-KSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXX 287
C KP + ++++ + K+ +A G + + C G+V + C G W N
Sbjct: 2083 CEKPPSVSYSILESVSKAKFAAGSVVSFKCMEGFVLNTSAK-IECMRGGQW--NPSPMSI 2139
Query: 288 XXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LP 464
+ ++ Y +G+N +G + C + G TC G W+ +P
Sbjct: 2140 QCIPVRCGEPPSIMNGYA--SGSNYSFGAMVAYSCNKGFYIKGEKKSTCEATGQWSSPIP 2197
Query: 465 ECKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQP 644
C V C P + ENGF+ + ++ ++ + Y C+ Y G C +W ++
Sbjct: 2198 TCHPVSCGEPPKVENGFLEHTTGRI--FESEVRYQCNPGYKSVGSPVFVCQANRHWHSE- 2254
Query: 645 SCKASCKLSVKRATVIYEGERVNIQDKFKNG--MLHGQKISFFC 770
S + G+ IQ+ F G G K+ FFC
Sbjct: 2255 --------SPLMCVPLDCGKPPPIQNGFMKGENFEVGSKVQFFC 2290
Score = 57.8 bits (138), Expect = 1e-08
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 1/181 (0%)
Frame = +3
Query: 111 CPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXX 290
CP+PEE+P ++ +Y +YTC+PG+ G +C G W
Sbjct: 2440 CPQPEEIPNGIIDVQGLAYL--STALYTCKPGFELVGNTTT-LCGENGHWLGGKPTCKAI 2496
Query: 291 XXXXXXXXXFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPE 467
K S Y L YG + C + G +TC E G+W + P
Sbjct: 2497 ECLKPKEILNGKFS-YTDLH-----YGQTVTYSCNRGFRLEGPSALTCLETGDWDVDAPS 2550
Query: 468 CKEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQPS 647
C + C P ENGFV Y Y C + + G C + G S+ P+
Sbjct: 2551 CNAIHCDSPQPIENGFVEGADYS---YGAIIIYSCFPGFQVAGHAMQTCEESGWSSSIPT 2607
Query: 648 C 650
C
Sbjct: 2608 C 2608
Score = 57.4 bits (137), Expect = 2e-08
Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 12/216 (5%)
Frame = +3
Query: 159 SSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVY 338
S+Y + Y C PGYV G RR C W +
Sbjct: 2789 SNYTYLSTLYYECDPGYVLNGTERR-TCQDDKNWDEDEPICIPVDCSSP----------- 2836
Query: 339 KPLAGNNSLYGGKAVFE------CLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPS 497
P++ N + G + F+ C + G + C +G+W+ P+C V+C P
Sbjct: 2837 -PVSANGQVRGDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPVRCATPP 2895
Query: 498 RPENGFVNYPAKQVLY-YQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCK-ASCKL 668
+ NG + + Y + + T+ CH+ Y L G ++ C GNW A+ P CK +C
Sbjct: 2896 QLANGVT----EGLDYGFMKEVTFHCHEGYILHGAPKLTCQSDGNWDAEIPLCKPVNC-- 2949
Query: 669 SVKRATVIYEGERVNIQDKFKNG--MLHGQKISFFC 770
G ++ F NG +HG I + C
Sbjct: 2950 ----------GPPEDLAHGFPNGFSFIHGGHIQYQC 2975
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 369 GGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVNYPAKQVLY 545
G K C P + GN C G WT+ LP C+ + C P ENGF + Y
Sbjct: 1651 GSKVNLFCDPGFQLVGNPVQYCLNQGQWTQPLPHCERISCGVPPPLENGF---HSADDFY 1707
Query: 546 YQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC 650
TY C++ Y L G + C G+W+ PSC
Sbjct: 1708 AGSTVTYQCNNGYYLLGDSRMFCTDNGSWNGVSPSC 1743
Score = 55.5 bits (132), Expect = 7e-08
Identities = 49/200 (24%), Positives = 67/200 (33%), Gaps = 12/200 (6%)
Frame = +3
Query: 87 HAAIAGRTCPKPEELPFAVVVPLKSSYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPI 266
H +T +E P S++ G + YTC PGY G IC G W
Sbjct: 2653 HLGAVAKTWENTKESP----ATHSSNFLYGTMVSYTCNPGYELLGN-PVLICQEDGTW-- 2705
Query: 267 NTXXXXXXXXXXXXXXXFAKLSVYKPLAGNNSL-------YGGKAVFECLPQHAMFGNGT 425
+ P A N G + C P H + G+
Sbjct: 2706 -----------NGSAPSCISIECDLPTAPENGFLRFTETSMGSAVQYSCKPGHILAGSDL 2754
Query: 426 ITCTEHGNWT-ELPECKEVKCPFPSRPENGFV---NYPAKQVLYYQDKATYGCHDTYTLD 593
C E+ W+ P C+ + C P+ NG + NY LYY+ C Y L+
Sbjct: 2755 RLCLENRKWSGASPRCEAISCKKPNPVMNGSIKGSNYTYLSTLYYE------CDPGYVLN 2808
Query: 594 GPEEVECNKFGNWSA-QPSC 650
G E C NW +P C
Sbjct: 2809 GTERRTCQDDKNWDEDEPIC 2828
Score = 54.3 bits (129), Expect = 2e-07
Identities = 48/186 (25%), Positives = 70/186 (37%), Gaps = 10/186 (5%)
Frame = +3
Query: 174 GEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYKP--- 344
G + Y+C+PG++ G R +C W +S KP
Sbjct: 2736 GSAVQYSCKPGHILAGSDLR-LCLENRKWS-------------GASPRCEAISCKKPNPV 2781
Query: 345 ----LAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPEN 509
+ G+N Y +EC P + + G TC + NW E P C V C P N
Sbjct: 2782 MNGSIKGSNYTYLSTLYYECDPGYVLNGTERRTCQDDKNWDEDEPICIPVDCSSPPVSAN 2841
Query: 510 GFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWS-AQPSC-KASCKLSVKRA 683
G V +Q + Y C++ + L+G C G+WS A P C C + A
Sbjct: 2842 GQVR---GDEYTFQKEIEYTCNEGFLLEGARSRVCLANGSWSGATPDCVPVRCATPPQLA 2898
Query: 684 TVIYEG 701
+ EG
Sbjct: 2899 NGVTEG 2904
>ref|NP_001014975.1| complement factor H isoform b precursor [Homo sapiens].
Length = 449
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
+Y G + +Y C+PGY S G + +C G W + +
Sbjct: 41 TYPEGTQAIYKCRPGYRSLGNV-IMVC-RKGEW-VALNPLRKCQKRPCGHPGDTPFGTFT 97
Query: 342 PLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWT-ELPECKEVKCPFPSRPENGFV 518
GN YG KAV+ C + + G + WT ++P C+ VKC + PENG +
Sbjct: 98 LTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKI 157
Query: 519 NYPAKQ---VLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSC-KASCK 665
A + ++ + C+ Y ++G EE+ C+ G WS + P C + SCK
Sbjct: 158 VSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCK 211
>ref|NP_000441.2| E-selectin precursor [Homo sapiens].
Length = 610
Score = 64.3 bits (155), Expect = 1e-10
Identities = 47/172 (27%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Frame = +3
Query: 384 FECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPFPSRPENGFV---NYPAKQVLYYQ 551
F+C + G ++ CT GNW E P CK V C +P+NG V + PA + + +
Sbjct: 270 FDCEEGFELMGAQSLQCTSSGNWDNEKPTCKAVTCRAVRQPQNGSVRCSHSPAGEFTF-K 328
Query: 552 DKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCKASCKLSVKRATVIYEGER--VNIQD 722
+ C + + L GP +VEC G W+ Q P C+A + T + ER +N
Sbjct: 329 SSCNFTCEEGFMLQGPAQVECTTQGQWTQQIPVCEAF------QCTALSNPERGYMNCLP 382
Query: 723 KFKNGMLHGQKISFFCR-------NKEKKCSYTEDAQCIDGTIEIPKCFKEH 857
+G F C +K +C T + T E +C H
Sbjct: 383 SASGSFRYGSSCEFSCEQGFVLKGSKRLQCGPTGEWDNEKPTCEAVRCDAVH 434
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 10/177 (5%)
Frame = +3
Query: 153 LKSSYAPGEEIVY------TCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXX 314
++ S++P E + TC+ G++ +G + C G W
Sbjct: 315 VRCSHSPAGEFTFKSSCNFTCEEGFMLQGPAQ-VECTTQGQWTQQIPVCEAFQCTALSNP 373
Query: 315 XFAKLSVYKPLAGNNSLYGGKAVFECLPQHAMFGNGTITCTEHGNW-TELPECKEVKCPF 491
++ P A + YG F C + G+ + C G W E P C+ V+C
Sbjct: 374 ERGYMNCL-PSASGSFRYGSSCEFSCEQGFVLKGSKRLQCGPTGEWDNEKPTCEAVRCDA 432
Query: 492 PSRPENGFVNYPAKQV--LYYQDKATYGCHDTYTLDGPEEVECNKFGNWSAQ-PSCK 653
+P G V + Y+ + C + + L G ++EC G W+ + PSC+
Sbjct: 433 VHQPPKGLVRCAHSPIGEFTYKSSCAFSCEEGFELHGSTQLECTSQGQWTEEVPSCQ 489
Score = 57.4 bits (137), Expect = 2e-08
Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)
Frame = +3
Query: 162 SYAPGEEIVYTCQPGYVSRGGIRRFICPLTGLWPINTXXXXXXXXXXXXXXXFAKLSVYK 341
S+ G ++C+ G+V +G +R C TG W +V++
Sbjct: 387 SFRYGSSCEFSCEQGFVLKGS-KRLQCGPTGEWDNEKPTCEAVRCD----------AVHQ 435
Query: 342 PLAG---------NNSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPF 491
P G Y F C + G+ + CT G WTE +P C+ VKC
Sbjct: 436 PPKGLVRCAHSPIGEFTYKSSCAFSCEEGFELHGSTQLECTSQGQWTEEVPSCQVVKCSS 495
Query: 492 PSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNWSA-QPSCKASCKL 668
+ P G +N + + C + +TL+G C G+WS P+C+A +
Sbjct: 496 LAVP--GKINMSCSGEPVFGTVCKFACPEGWTLNGSAARTCGATGHWSGLLPTCEAPTES 553
Query: 669 SV 674
++
Sbjct: 554 NI 555
Score = 52.8 bits (125), Expect = 4e-07
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +3
Query: 357 NSLYGGKAVFECLPQHAMFGNGTITCTEHGNWTE-LPECKEVKCPFPSRPENGFVN-YPA 530
N Y C + T+ C G W+ +P C V+C + P NGFV +
Sbjct: 199 NFSYNSSCSISCDRGYLPSSMETMQCMSSGEWSAPIPACNVVECDAVTNPANGFVECFQN 258
Query: 531 KQVLYYQDKATYGCHDTYTLDGPEEVECNKFGNW-SAQPSCKA 656
+ T+ C + + L G + ++C GNW + +P+CKA
Sbjct: 259 PGSFPWNTTCTFDCEEGFELMGAQSLQCTSSGNWDNEKPTCKA 301
>ref|NP_006675.2| complement factor H-related protein 4 isoform 3 precursor [Homo
sapiens].
Length = 331
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/264 (25%), Positives = 100/264 (37%), Gaps = 17/264 (6%)
Frame = +3
Query: 105 RTCPKPE-ELPFAVVVPLKSSYAPGEEIVYTCQPGYVSR-GGIRRFICPLTGLWPINTXX 278
RTC K + E+ + S Y +EI Y C+PGY + G I L W
Sbjct: 86 RTCSKSDIEIENGFISESSSIYILNKEIQYKCKPGYATADGNSSGSITCLQNGWSAQPIC 145
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAV----FECLPQHAM-FGN--GTITCT 437
F + V++ ++ K +EC + + +GN G+I C
Sbjct: 146 IK-----------FCDMPVFENSRAKSNGMRFKLHDTLDYECYDGYEISYGNTTGSIVCG 194
Query: 438 EHGNWTELPEC--KEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVE 611
E G W+ P C KC P NG +V Q + Y C Y L G V
Sbjct: 195 EDG-WSHFPTCYNSSEKCGPPPPISNGDTTSFLLKVYVPQSRVEYQCQSYYELQGSNYVT 253
Query: 612 CNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLH----GQKISFFCR-- 773
C+ G WS P C C ++ + + NIQ K K+ + + G I F C+
Sbjct: 254 CSN-GEWSEPPRCIHPCIITEENM------NKNNIQLKGKSDIKYYAKTGDTIEFMCKLG 306
Query: 774 NKEKKCSYTEDAQCIDGTIEIPKC 845
+ A C +G +E P+C
Sbjct: 307 YNANTSVLSFQAVCREGIVEYPRC 330
>ref|NP_001188480.1| complement factor H-related protein 4 isoform 2 precursor [Homo
sapiens].
Length = 577
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/264 (25%), Positives = 100/264 (37%), Gaps = 17/264 (6%)
Frame = +3
Query: 105 RTCPKPE-ELPFAVVVPLKSSYAPGEEIVYTCQPGYVSR-GGIRRFICPLTGLWPINTXX 278
RTC K + E+ + S Y +EI Y C+PGY + G I L W
Sbjct: 332 RTCSKSDIEIENGFISESSSIYILNKEIQYKCKPGYATADGNSSGSITCLQNGWSAQPIC 391
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAV----FECLPQHAM-FGN--GTITCT 437
F + V++ ++ K +EC + + +GN G+I C
Sbjct: 392 IK-----------FCDMPVFENSRAKSNGMRFKLHDTLDYECYDGYEISYGNTTGSIVCG 440
Query: 438 EHGNWTELPEC--KEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVE 611
E G W+ P C KC P NG +V Q + Y C Y L G V
Sbjct: 441 EDG-WSHFPTCYNSSEKCGPPPPISNGDTTSFLLKVYVPQSRVEYQCQSYYELQGSNYVT 499
Query: 612 CNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLH----GQKISFFCR-- 773
C+ G WS P C C ++ + + NIQ K K+ + + G I F C+
Sbjct: 500 CSN-GEWSEPPRCIHPCIITEENM------NKNNIQLKGKSDIKYYAKTGDTIEFMCKLG 552
Query: 774 NKEKKCSYTEDAQCIDGTIEIPKC 845
+ A C +G +E P+C
Sbjct: 553 YNANTSVLSFQAVCREGIVEYPRC 576
>ref|NP_001188479.1| complement factor H-related protein 4 isoform 1 precursor [Homo
sapiens].
Length = 578
Score = 63.9 bits (154), Expect = 2e-10
Identities = 68/264 (25%), Positives = 100/264 (37%), Gaps = 17/264 (6%)
Frame = +3
Query: 105 RTCPKPE-ELPFAVVVPLKSSYAPGEEIVYTCQPGYVSR-GGIRRFICPLTGLWPINTXX 278
RTC K + E+ + S Y +EI Y C+PGY + G I L W
Sbjct: 333 RTCSKSDIEIENGFISESSSIYILNKEIQYKCKPGYATADGNSSGSITCLQNGWSAQPIC 392
Query: 279 XXXXXXXXXXXXXFAKLSVYKPLAGNNSLYGGKAV----FECLPQHAM-FGN--GTITCT 437
F + V++ ++ K +EC + + +GN G+I C
Sbjct: 393 IK-----------FCDMPVFENSRAKSNGMRFKLHDTLDYECYDGYEISYGNTTGSIVCG 441
Query: 438 EHGNWTELPEC--KEVKCPFPSRPENGFVNYPAKQVLYYQDKATYGCHDTYTLDGPEEVE 611
E G W+ P C KC P NG +V Q + Y C Y L G V
Sbjct: 442 EDG-WSHFPTCYNSSEKCGPPPPISNGDTTSFLLKVYVPQSRVEYQCQSYYELQGSNYVT 500
Query: 612 CNKFGNWSAQPSCKASCKLSVKRATVIYEGERVNIQDKFKNGMLH----GQKISFFCR-- 773
C+ G WS P C C ++ + + NIQ K K+ + + G I F C+
Sbjct: 501 CSN-GEWSEPPRCIHPCIITEENM------NKNNIQLKGKSDIKYYAKTGDTIEFMCKLG 553
Query: 774 NKEKKCSYTEDAQCIDGTIEIPKC 845
+ A C +G +E P+C
Sbjct: 554 YNANTSVLSFQAVCREGIVEYPRC 577
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,596,282
Number of extensions: 1067149
Number of successful extensions: 4130
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 100
Length of query: 304
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 202
Effective length of database: 14,934,836
Effective search space: 3016836872
Effective search space used: 3016836872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014841
(912 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 389 e-105
gb|JH118425.1| Sus scrofa unplaced genomic scaffold ChrUScaf263 375 e-101
>Sscrofa_Chr12
|| Length = 63588571
Score = 389 bits (196), Expect = e-105
Identities = 199/200 (99%)
Strand = Plus / Minus
Query: 653 agcatcttgtaaattatctgtgaaaagagctactgtgatatatgaaggagagagagtcaa 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13144088 agcatcttgtaaattatctgtgaaaagagctactgtgatatatgaaggagagagagtcaa 13144029
Query: 713 tatccaagataaatttaagaatggaatgctgcatggccaaaaaatttctttcttctgcag 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13144028 tatccaagataaatttaagaatggaatgctgcatggccaaaaaatttctttcttctgcaa 13143969
Query: 773 gaataaggaaaagaagtgcagctatacggaggatgcccagtgcatagacggcaccattga 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13143968 gaataaggaaaagaagtgcagctatacggaggatgcccagtgcatagacggcaccattga 13143909
Query: 833 aatccccaaatgcttcaagg 852
||||||||||||||||||||
Sbjct: 13143908 aatccccaaatgcttcaagg 13143889
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 286 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148474 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 13148415
Query: 346 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148414 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 13148355
Query: 406 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148354 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 13148295
Query: 466 aatgtaagg 474
|||||||||
Sbjct: 13148294 aatgtaagg 13148286
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 474 gaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatcctgcaaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13146196 gaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatcctgcaaag 13146137
Query: 534 caagttctttattaccaggataaagccacatatggttgccatgacacttacaccttggat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13146136 caagttctttattaccaggataaagccacatatggttgccatgacacttacaccttggat 13146077
Query: 594 ggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagcccagctgtaaa 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13146076 ggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagcccagctgtaaa 13146017
Query: 654 g 654
|
Sbjct: 13146016 g 13146016
Score = 335 bits (169), Expect = 3e-89
Identities = 175/177 (98%)
Strand = Plus / Minus
Query: 109 cctgtcccaagccggaagagttaccgtttgccgtagttgtgccgttgaaatcatcctacg 168
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 13153205 cctgtcccaagccggaagagttaccgtttgctgtagttgtgccgttgaaatcatcctatg 13153146
Query: 169 cgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggggagggatcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13153145 cgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggggagggatcc 13153086
Query: 229 ggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaatgtctac 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13153085 ggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaatgtctac 13153029
Score = 214 bits (108), Expect = 6e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1 ggagaggaaagccacttttgtcgtgcccttgagaattagccacaatgattcctccggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13154308 ggagaggaaagccacttttgtcgtgcccttgagaattagccacaatgattcctccggtgc 13154249
Query: 61 tcatctttttcctgagttttctctgccatgctgctatcgcagggcgaa 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13154248 tcatctttttcctgagttttctctgccatgctgctatcgcagggcgaa 13154201
Score = 105 bits (53), Expect = 4e-20
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 852 gagcacagtgctttggctttctggaaaacggatgcatcaaatgtaaaaccatgctaagct 911
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 13142503 gagcacagtgctttggctttctggaaaacggatgcatcagatgtaaagccatgctaagct 13142444
Query: 912 g 912
|
Sbjct: 13142443 g 13142443
>gb|JH118425.1| Sus scrofa unplaced genomic scaffold ChrUScaf263
Length = 223342
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 286 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140735 ctataacctgccctccaccacccacacccaagtttgcaaaacttagtgtttataagccat 140794
Query: 346 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140795 tggctgggaacaactctctctatggaggcaaggcagtctttgaatgcttgccacagcacg 140854
Query: 406 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140855 caatgtttggaaatggtacaattacttgcacagaacatggaaattggactgaattaccag 140914
Query: 466 aatgtaagg 474
|||||||||
Sbjct: 140915 aatgtaagg 140923
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 474 gaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatcctgcaaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142690 gaagtaaaatgcccattcccatcaagaccagaaaacggatttgtgaactatcctgcaaag 142749
Query: 534 caagttctttattaccaggataaagccacatatggttgccatgacacttacaccttggat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142750 caagttctttattaccaggataaagccacatatggttgccatgacacttacaccttggat 142809
Query: 594 ggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagcccagctgtaaa 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142810 ggaccagaagaagttgaatgtaacaaatttggaaactggtctgcacagcccagctgtaaa 142869
Query: 654 g 654
|
Sbjct: 142870 g 142870
Score = 335 bits (169), Expect = 3e-89
Identities = 175/177 (98%)
Strand = Plus / Plus
Query: 109 cctgtcccaagccggaagagttaccgtttgccgtagttgtgccgttgaaatcatcctacg 168
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 135947 cctgtcccaagccggaagagttaccgtttgctgtagttgtgccgttgaaatcatcctatg 136006
Query: 169 cgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggggagggatcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136007 cgccaggggaggagatagtgtatacctgccagccggggtacgtgtcccggggagggatcc 136066
Query: 229 ggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaatgtctac 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136067 ggcggtttatctgcccgctcacaggactttggcccatcaacactctgaaatgtctac 136123
Score = 214 bits (108), Expect = 6e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ggagaggaaagccacttttgtcgtgcccttgagaattagccacaatgattcctccggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134844 ggagaggaaagccacttttgtcgtgcccttgagaattagccacaatgattcctccggtgc 134903
Query: 61 tcatctttttcctgagttttctctgccatgctgctatcgcagggcgaa 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134904 tcatctttttcctgagttttctctgccatgctgctatcgcagggcgaa 134951
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,319,779
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 10
Length of query: 912
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 891
Effective length of database: 2,808,413,156
Effective search space: 2502296121996
Effective search space used: 2502296121996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)