Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_583512.4| PREDICTED: protein BAP28, partial [Bos taurus]. 598 e-171
Alignment gi|XP_585511.4| PREDICTED: hypothetical protein [Bos taurus]. 275 9e-74
>ref|XP_583512.4| PREDICTED: protein BAP28, partial [Bos taurus].
Length = 613
Score = 598 bits (1541), Expect = e-171
Identities = 313/384 (81%), Positives = 329/384 (85%), Gaps = 3/384 (0%)
Frame = +1
Query: 550 VVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDKVNA 729
VVESGGPQVLTGLEQRLLETVLGYI+AVA+SME+NADKLTGKFWRALLSKAYD+LDK A
Sbjct: 1 VVESGGPQVLTGLEQRLLETVLGYINAVAQSMERNADKLTGKFWRALLSKAYDMLDKRTA 60
Query: 730 LLPTETFIP---VIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA 900
PT P LDLLNNKLQQKTSWKKKI+YHFL+LVPVLVA
Sbjct: 61 REPTAVCSPESFXXXXXXXXXXXXXXXXXLDLLNNKLQQKTSWKKKIIYHFLDLVPVLVA 120
Query: 901 MVKHKRKTLEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNVL 1080
MVKHKRKTLE+ INRQTALYTLKLLCKNFGAENPEPF+PVL T V+LI G KEEKNVL
Sbjct: 121 MVKHKRKTLEDQPINRQTALYTLKLLCKNFGAENPEPFVPVLHTTVKLIALGAKEEKNVL 180
Query: 1081 GSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVETL 1260
GSALLCVAEVVSTL+ALAIPQLPSLMP LLTTM+STRELVSGEVYLLSALAALQKVVETL
Sbjct: 181 GSALLCVAEVVSTLEALAIPQLPSLMPPLLTTMRSTRELVSGEVYLLSALAALQKVVETL 240
Query: 1261 PHFISPYLEGVLSQVIQLEKITSEMGPASQANVRXXXXXXXXXXXXXPRVLLPAITKTYK 1440
PHFISPYLEGVLSQVI LEKITSEMGPASQANVR PRVLLPAI KTYK
Sbjct: 241 PHFISPYLEGVLSQVIHLEKITSEMGPASQANVRLTSLKKTLATMLSPRVLLPAINKTYK 300
Query: 1441 QIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRVQHAESDLEEVGR 1620
QIEKNWKN MGPFMSVLREH+GVM+KEELASHQPQLT FFLEALDFR QHAE+DLEE+G+
Sbjct: 301 QIEKNWKNLMGPFMSVLREHIGVMRKEELASHQPQLTTFFLEALDFRTQHAENDLEEIGK 360
Query: 1621 TEEYIIDCLVAMVVKLSEVTFRPL 1692
TE YIIDCLVAMVVKLSEVTFRPL
Sbjct: 361 TENYIIDCLVAMVVKLSEVTFRPL 384
>ref|XP_585511.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 1216
Score = 275 bits (703), Expect = 9e-74
Identities = 146/190 (76%), Positives = 151/190 (79%)
Frame = +1
Query: 1 VKMVIPALIQSDRGDSXXXXXXXXXXXXKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 180
VKMVIPALIQSD GDS KII+VFVDALPHVPEHRRLP+L QLVDTLGAE
Sbjct: 954 VKMVIPALIQSDGGDSAEVTRNVEDIVVKIINVFVDALPHVPEHRRLPVLVQLVDTLGAE 1013
Query: 181 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNIXXX 360
RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLM I
Sbjct: 1014 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMTILEY 1073
Query: 361 XXXXXXXXXXXXXXXVSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF 540
VSNKSE QEE+LQVFNI+AHTSKQLRHFK+LSVSFMSQLLASNNF
Sbjct: 1074 LLKLPEEKEETIPKSVSNKSEPQEEMLQVFNIDAHTSKQLRHFKFLSVSFMSQLLASNNF 1133
Query: 541 IRKVVESGGP 570
IRK E P
Sbjct: 1134 IRKKYECVHP 1143
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,089,447
Number of extensions: 1535128
Number of successful extensions: 4655
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4645
Number of HSP's successfully gapped: 2
Length of query: 572
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 464
Effective length of database: 14,107,870
Effective search space: 6546051680
Effective search space used: 6546051680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014862
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536334.2| PREDICTED: similar to Protein BAP28 [Canis fami... 865 0.0
>ref|XP_536334.2| PREDICTED: similar to Protein BAP28 [Canis familiaris].
Length = 2141
Score = 865 bits (2234), Expect = 0.0
Identities = 450/564 (79%), Positives = 483/564 (85%)
Frame = +1
Query: 1 VKMVIPALIQSDRGDSXXXXXXXXXXXXKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 180
VKMVIPALIQSD GD KII+VFVDALPHVPEHRRLPIL QLVDTLGAE
Sbjct: 1350 VKMVIPALIQSDGGDFVEVTRNVEGVVVKIINVFVDALPHVPEHRRLPILVQLVDTLGAE 1409
Query: 181 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNIXXX 360
RFLW+LLVLLFEQYVTKTVL AAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNI
Sbjct: 1410 RFLWILLVLLFEQYVTKTVLVAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNILQY 1469
Query: 361 XXXXXXXXXXXXXXXVSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF 540
VS KSESQE++LQ+FNI+ HT+KQLRH K+LSVSFMSQLLAS F
Sbjct: 1470 LIKLPEEKEEAVPKAVSTKSESQEQMLQIFNIDTHTNKQLRHLKFLSVSFMSQLLASTRF 1529
Query: 541 IRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDK 720
IRK+VESGGPQVL GLEQRLLETVLGYI+ VA+S+EKNADKLT KFWRALLSKAYD+LDK
Sbjct: 1530 IRKMVESGGPQVLKGLEQRLLETVLGYINTVAQSVEKNADKLTVKFWRALLSKAYDMLDK 1589
Query: 721 VNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA 900
VNALLPTETFI VI+GLL NPLPSVRRKALDLLNNKLQQ TSWKKKIVY FL+LVPVL+A
Sbjct: 1590 VNALLPTETFIAVIKGLLGNPLPSVRRKALDLLNNKLQQNTSWKKKIVYRFLKLVPVLLA 1649
Query: 901 MVKHKRKTLEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNVL 1080
+V+HK K +EE AINRQTALYTLKLLCKNFGAENP F+PVL AV+LI TKEEKNVL
Sbjct: 1650 IVQHK-KMVEEQAINRQTALYTLKLLCKNFGAENPGHFVPVLNAAVKLIAPETKEEKNVL 1708
Query: 1081 GSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVETL 1260
GSALLCVAEV STL+ALAIPQLPSLMPSLLT MK+T EL+SGEVYLLSALAAL KVVETL
Sbjct: 1709 GSALLCVAEVASTLEALAIPQLPSLMPSLLTRMKNTSELLSGEVYLLSALAALHKVVETL 1768
Query: 1261 PHFISPYLEGVLSQVIQLEKITSEMGPASQANVRXXXXXXXXXXXXXPRVLLPAITKTYK 1440
PHFISPYLEGVLSQV+ LEKITSEMG ASQANVR PRVLLPAI KTYK
Sbjct: 1769 PHFISPYLEGVLSQVVHLEKITSEMGSASQANVRVTSLKKTLATTLSPRVLLPAINKTYK 1828
Query: 1441 QIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRVQHAESDLEEVGR 1620
QIEKNWKNHMGPFMS+L+EH+G+MKKEEL SHQ QLT FFLEALDFR QH+ESDLEE+G+
Sbjct: 1829 QIEKNWKNHMGPFMSILQEHIGIMKKEELTSHQSQLTIFFLEALDFRAQHSESDLEEIGK 1888
Query: 1621 TEEYIIDCLVAMVVKLSEVTFRPL 1692
TE +IIDCLVAMVVKLSEVTFRPL
Sbjct: 1889 TENFIIDCLVAMVVKLSEVTFRPL 1912
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,610,461
Number of extensions: 1571622
Number of successful extensions: 4562
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4557
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 464
Effective length of database: 15,274,216
Effective search space: 7087236224
Effective search space used: 7087236224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925225.1| PREDICTED: HEAT repeat-containing protein 1 ... 990 0.0
>ref|XP_001925225.1| PREDICTED: HEAT repeat-containing protein 1 [Sus scrofa].
Length = 2154
Score = 990 bits (2560), Expect = 0.0
Identities = 519/564 (92%), Positives = 520/564 (92%)
Frame = +1
Query: 1 VKMVIPALIQSDRGDSXXXXXXXXXXXXKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 180
VKMVIPALIQSDRGDS KIIHVFVDALPHVPEHRRLPILAQLVDTLGAE
Sbjct: 1362 VKMVIPALIQSDRGDSVEVTRNVEDVVVKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 1421
Query: 181 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNIXXX 360
RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNI
Sbjct: 1422 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNILEY 1481
Query: 361 XXXXXXXXXXXXXXXVSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF 540
VSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF
Sbjct: 1482 LLKLPEEKEETTAKTVSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF 1541
Query: 541 IRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDK 720
IRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDK
Sbjct: 1542 IRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDK 1601
Query: 721 VNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA 900
VNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA
Sbjct: 1602 VNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA 1661
Query: 901 MVKHKRKTLEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNVL 1080
MVKHKRKTLEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNVL
Sbjct: 1662 MVKHKRKTLEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNVL 1721
Query: 1081 GSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVETL 1260
GSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVETL
Sbjct: 1722 GSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVETL 1781
Query: 1261 PHFISPYLEGVLSQVIQLEKITSEMGPASQANVRXXXXXXXXXXXXXPRVLLPAITKTYK 1440
PHFISPYLEGVLSQVIQLEKITSEMGPASQANVR PRVLLPAITKTYK
Sbjct: 1782 PHFISPYLEGVLSQVIQLEKITSEMGPASQANVRLTSLKKTLATTLSPRVLLPAITKTYK 1841
Query: 1441 QIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRVQHAESDLEEVGR 1620
QIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFR QHAESDLEEVGR
Sbjct: 1842 QIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRAQHAESDLEEVGR 1901
Query: 1621 TEEYIIDCLVAMVVKLSEVTFRPL 1692
TE+YIIDCLVAMVVKLSEVTFRPL
Sbjct: 1902 TEDYIIDCLVAMVVKLSEVTFRPL 1925
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,287,941
Number of extensions: 981368
Number of successful extensions: 2980
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2978
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 468
Effective length of database: 8,754,644
Effective search space: 4097173392
Effective search space used: 4097173392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659084.3| BAP28 protein [Mus musculus]. 830 0.0
>ref|NP_659084.3| BAP28 protein [Mus musculus].
Length = 2143
Score = 830 bits (2144), Expect = 0.0
Identities = 433/565 (76%), Positives = 476/565 (84%), Gaps = 1/565 (0%)
Frame = +1
Query: 1 VKMVIPALIQSDRGDSXXXXXXXXXXXXKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 180
VKMVIPALIQSD GDS KII VFVDALPHVPEHRRLPIL QLV TL A+
Sbjct: 1350 VKMVIPALIQSDTGDSVEVTRNVEQIVVKIIGVFVDALPHVPEHRRLPILVQLVTTLSAK 1409
Query: 181 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNIXXX 360
+FLW+LLVLLFEQYVTKTVL AAYGEKDAILEADTEFWISVCCEFSVQHQ+QSLM+I
Sbjct: 1410 KFLWILLVLLFEQYVTKTVLVAAYGEKDAILEADTEFWISVCCEFSVQHQVQSLMHILHY 1469
Query: 361 XXXXXXXXXXXXXXXVSNKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNNF 540
VS KSE Q+E+L VF ++AHTSKQLRHFKYLSVSFMSQLLASN+F
Sbjct: 1470 LEKLPEEKEEATSKTVSTKSEVQDEMLPVFKVDAHTSKQLRHFKYLSVSFMSQLLASNHF 1529
Query: 541 IRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLDK 720
++KVV SGGP+ L GLEQ LLETVL YI+ VA+SMEKNADKLTGKFWRALLSKAYD+LDK
Sbjct: 1530 LKKVVGSGGPKSLHGLEQGLLETVLSYINTVAQSMEKNADKLTGKFWRALLSKAYDMLDK 1589
Query: 721 VNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLVA 900
VNALLPTETFI VIRGL+ NPLPSVRRKALDLLNNKLQQ T W+KK+V+ FL+LVPVL+A
Sbjct: 1590 VNALLPTETFISVIRGLVGNPLPSVRRKALDLLNNKLQQHTFWRKKMVHRFLKLVPVLLA 1649
Query: 901 MVKHKRKTLE-EHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKNV 1077
+V+HK++ E E AINRQTALYTLKLLCKNFGA+N EPFIPVL+TAV+LI KEEKNV
Sbjct: 1650 IVQHKKREAEDEQAINRQTALYTLKLLCKNFGAQNREPFIPVLSTAVKLIEPEKKEEKNV 1709
Query: 1078 LGSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVET 1257
LGSALLC+AEV STL+ALAIPQLPSLMPSLLT MKST ELV EV LLSALAAL KVVET
Sbjct: 1710 LGSALLCIAEVTSTLEALAIPQLPSLMPSLLTAMKSTSELVHSEVCLLSALAALHKVVET 1769
Query: 1258 LPHFISPYLEGVLSQVIQLEKITSEMGPASQANVRXXXXXXXXXXXXXPRVLLPAITKTY 1437
LPHFISPYLEG+L+QVI LEKIT EMG ASQAN+R PRVLLPAI+KT+
Sbjct: 1770 LPHFISPYLEGLLTQVIHLEKITREMGSASQANIRLTALKKTLATELSPRVLLPAISKTF 1829
Query: 1438 KQIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRVQHAESDLEEVG 1617
KQI+KNWKNHMGPFMS+L+EH+GVMKKEEL SHQ QLT FFLEALDFR QH+E DLEEVG
Sbjct: 1830 KQIQKNWKNHMGPFMSILQEHIGVMKKEELLSHQSQLTTFFLEALDFRAQHSEDDLEEVG 1889
Query: 1618 RTEEYIIDCLVAMVVKLSEVTFRPL 1692
+TE +IIDCLVAMVVKLSEVTFRPL
Sbjct: 1890 KTEGWIIDCLVAMVVKLSEVTFRPL 1914
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,364,364
Number of extensions: 1320264
Number of successful extensions: 3887
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3883
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 465
Effective length of database: 12,403,707
Effective search space: 5767723755
Effective search space used: 5767723755
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060542.4| HEAT repeat-containing protein 1 [Homo sapiens]. 865 0.0
>ref|NP_060542.4| HEAT repeat-containing protein 1 [Homo sapiens].
Length = 2144
Score = 865 bits (2235), Expect = 0.0
Identities = 452/566 (79%), Positives = 486/566 (85%), Gaps = 2/566 (0%)
Frame = +1
Query: 1 VKMVIPALIQSDRGDSXXXXXXXXXXXXKIIHVFVDALPHVPEHRRLPILAQLVDTLGAE 180
VKMVIPALIQSD GDS KII VFVDALPHVPEHRRLPIL QLVDTLGAE
Sbjct: 1350 VKMVIPALIQSDSGDSIEVSRNVEEIVVKIISVFVDALPHVPEHRRLPILVQLVDTLGAE 1409
Query: 181 RFLWVLLVLLFEQYVTKTVLAAAYGEKDAILEADTEFWISVCCEFSVQHQIQSLMNIXXX 360
+FLW+LL+LLFEQYVTKTVLAAAYGEKDAILEADTEFW SVCCEFSVQHQIQSLMNI
Sbjct: 1410 KFLWILLILLFEQYVTKTVLAAAYGEKDAILEADTEFWFSVCCEFSVQHQIQSLMNILQY 1469
Query: 361 XXXXXXXXXXXXXXXVS-NKSESQEEVLQVFNIEAHTSKQLRHFKYLSVSFMSQLLASNN 537
VS NKSESQEE+LQVFN+E HTSKQLRHFK+LSVSFMSQLL+SNN
Sbjct: 1470 LLKLPEEKEETIPKAVSFNKSESQEEMLQVFNVETHTSKQLRHFKFLSVSFMSQLLSSNN 1529
Query: 538 FIRKVVESGGPQVLTGLEQRLLETVLGYIHAVARSMEKNADKLTGKFWRALLSKAYDLLD 717
F++KVVESGGP++L GLE+RLLETVLGYI AVA+SME+NADKLT KFWRALLSKAYDLLD
Sbjct: 1530 FLKKVVESGGPEILKGLEERLLETVLGYISAVAQSMERNADKLTVKFWRALLSKAYDLLD 1589
Query: 718 KVNALLPTETFIPVIRGLLENPLPSVRRKALDLLNNKLQQKTSWKKKIVYHFLELVPVLV 897
KVNALLPTETFIPVIRGL+ NPLPSVRRKALDLLNNKLQQ SWKK IV FL+LVP L+
Sbjct: 1590 KVNALLPTETFIPVIRGLVGNPLPSVRRKALDLLNNKLQQNISWKKTIVTRFLKLVPDLL 1649
Query: 898 AMVKHKRKT-LEEHAINRQTALYTLKLLCKNFGAENPEPFIPVLTTAVRLIVAGTKEEKN 1074
A+V+ K+K EE AINRQTALYTLKLLCKNFGAENP+PF+PVL TAV+LI KEEKN
Sbjct: 1650 AIVQRKKKEGEEEQAINRQTALYTLKLLCKNFGAENPDPFVPVLNTAVKLIAPERKEEKN 1709
Query: 1075 VLGSALLCVAEVVSTLQALAIPQLPSLMPSLLTTMKSTRELVSGEVYLLSALAALQKVVE 1254
VLGSALLC+AEV STL+ALAIPQLPSLMPSLLTTMK+T ELVS EVYLLSALAALQKVVE
Sbjct: 1710 VLGSALLCIAEVTSTLEALAIPQLPSLMPSLLTTMKNTSELVSSEVYLLSALAALQKVVE 1769
Query: 1255 TLPHFISPYLEGVLSQVIQLEKITSEMGPASQANVRXXXXXXXXXXXXXPRVLLPAITKT 1434
TLPHFISPYLEG+LSQVI LEKITSEMG ASQAN+R PRVLLPAI KT
Sbjct: 1770 TLPHFISPYLEGILSQVIHLEKITSEMGSASQANIRLTSLKKTLATTLAPRVLLPAIKKT 1829
Query: 1435 YKQIEKNWKNHMGPFMSVLREHVGVMKKEELASHQPQLTAFFLEALDFRVQHAESDLEEV 1614
YKQIEKNWKNHMGPFMS+L+EH+GVMKKEEL SHQ QLTAFFLEALDFR QH+E+DLEEV
Sbjct: 1830 YKQIEKNWKNHMGPFMSILQEHIGVMKKEELTSHQSQLTAFFLEALDFRAQHSENDLEEV 1889
Query: 1615 GRTEEYIIDCLVAMVVKLSEVTFRPL 1692
G+TE IIDCLVAMVVKLSEVTFRPL
Sbjct: 1890 GKTENCIIDCLVAMVVKLSEVTFRPL 1915
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,684,607
Number of extensions: 1558912
Number of successful extensions: 4611
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4608
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 464
Effective length of database: 14,737,052
Effective search space: 6837992128
Effective search space used: 6837992128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014862
(1718 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 567 e-159
>Sscrofa_Chr14
|| Length = 153851969
Score = 567 bits (286), Expect = e-159
Identities = 289/290 (99%)
Strand = Plus / Plus
Query: 862 gtttaccacttcctcgaactggtcccagtccttgtggccatggtgaagcataaaagaaag 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835781 gtttaccacttcctcgaactggtcccagtccttgtggccatggtgaagcataaaagaaag 58835840
Query: 922 acgttagaagagcacgccataaacagacagacagctttgtacaccttaaaactgctatgc 981
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835841 acgttagaagagcatgccataaacagacagacagctttgtacaccttaaaactgctatgc 58835900
Query: 982 aagaattttggtgcagaaaatccagagccttttatcccggtgctgaccaccgcagtgagg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835901 aagaattttggtgcagaaaatccagagccttttatcccggtgctgaccaccgcagtgagg 58835960
Query: 1042 ttgattgttgcaggaacaaaggaggagaagaatgtcttgggaagcgccctactgtgcgtg 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835961 ttgattgttgcaggaacaaaggaggagaagaatgtcttgggaagcgccctactgtgcgtg 58836020
Query: 1102 gctgaggtggtctccaccctgcaagcactggccatcccccagctgcccag 1151
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58836021 gctgaggtggtctccaccctgcaagcactggccatcccccagctgcccag 58836070
Score = 466 bits (235), Expect = e-128
Identities = 235/235 (100%)
Strand = Plus / Plus
Query: 28 cagtcggacagaggtgactctgtagaagtcacgagaaacgtggaggacgtcgtggtcaaa 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58829088 cagtcggacagaggtgactctgtagaagtcacgagaaacgtggaggacgtcgtggtcaaa 58829147
Query: 88 atcattcacgtgtttgtggatgcgctgccgcatgttcccgagcacaggcgcctgcccatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58829148 atcattcacgtgtttgtggatgcgctgccgcatgttcccgagcacaggcgcctgcccatc 58829207
Query: 148 cttgctcagctcgtggatacactgggtgcagaacgcttcctctgggttctcctcgtcctg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58829208 cttgctcagctcgtggatacactgggtgcagaacgcttcctctgggttctcctcgtcctg 58829267
Query: 208 ctctttgaacagtacgtcactaagacagtgctggcggctgcctacggagaaaagg 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58829268 ctctttgaacagtacgtcactaagacagtgctggcggctgcctacggagaaaagg 58829322
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 387 agaaaccactgccaaaacagtatctaataagagtgaatcacaagaagaagtgcttcaggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58831419 agaaaccactgccaaaacagtatctaataagagtgaatcacaagaagaagtgcttcaggt 58831478
Query: 447 ctttaacatagaggctcacactagcaagcagctgcggcattttaaatatttgtcagtgtc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58831479 ctttaacatagaggctcacactagcaagcagctgcggcattttaaatatttgtcagtgtc 58831538
Query: 507 cttcatgtctcagctcctggcttccaataattttatcagaaaggt 551
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58831539 cttcatgtctcagctcctggcttccaataattttatcagaaaggt 58831583
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 1299 acaggtgattcagctggagaaaatcactagtgagatgggtcctgcctcccaggctaatgt 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58837888 acaggtgattcagctggagaaaatcactagtgagatgggtcctgcctcccaggctaatgt 58837947
Query: 1359 tcgtctcacatctcttaaaaagacgctggcaaccaccctctcaccccgagtcttactgcc 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58837948 tcgtctcacatctcttaaaaagacgctggcaaccaccctctcaccccgagtcttactgcc 58838007
Query: 1419 agccatcaccaagacgtataagcagattgagaaaaactggaag 1461
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58838008 agccatcaccaagacgtataagcagattgagaaaaactggaag 58838050
Score = 311 bits (157), Expect = 7e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 1150 agcctgatgccatcattgctgacgaccatgaaaagcacccgcgagctggtctctggtgag 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58836941 agcctgatgccatcattgctgacgaccatgaaaagcacccgcgagctggtctctggtgag 58837000
Query: 1210 gtctacctgctcagtgccctggcggccctgcagaaggttgttgagaccctgccgcacttc 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58837001 gtctacctgctcagtgccctggcggccctgcagaaggttgttgagaccctgccgcacttc 58837060
Query: 1270 atcagcccctacctggaaggagtcctgtcacaggtga 1306
|||||||||||||||||||||||||||||||||||||
Sbjct: 58837061 atcagcccctacctggaaggagtcctgtcacaggtga 58837097
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 719 aggtcaatgccctgctgcccacagaaacattcatccccgtgattagagggctgctggaga 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835147 aggtcaatgccctgctgcccacagaaacattcatccccgtgattagagggctgctggaga 58835206
Query: 779 acccactgccatccgtgcgccgcaaagctttagatcttttgaacaacaagttgcagcaga 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58835207 acccactgccatccgtgcgccgcaaagctttagatcttttgaacaacaagttgcagcaga 58835266
Query: 839 aaacttcctggaagaagaaaatcgt 863
|||||||||||||||||||||||||
Sbjct: 58835267 aaacttcctggaagaagaaaatcgt 58835291
Score = 256 bits (129), Expect = 4e-65
Identities = 135/137 (98%)
Strand = Plus / Plus
Query: 1460 agaatcacatgggcccatttatgagcgtccttcgagagcacgttggggtgatgaagaagg 1519
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58838468 agaatcacatgggcccgtttatgagcgtccttcgagagcacgttggggtgatgaagaagg 58838527
Query: 1520 aggagctcgcctcccaccagccccagctcaccgccttcttcctggaggccctggacttcc 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58838528 aggagctcgcctcccaccagccccagctcaccgccttcttcctggaggccctggacttcc 58838587
Query: 1580 gtgtccagcacgcggag 1596
||| |||||||||||||
Sbjct: 58838588 gtgcccagcacgcggag 58838604
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 595 aggttgctggaaacagttcttggctacatccatgccgtagcccggtccatggagaaaaat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58834412 aggttgctggaaacagttcttggctacatccatgccgtagcccggtccatggagaaaaat 58834471
Query: 655 gctgacaagctaactgggaagttctggcgtgcgctcctcagtaaagcttatgacttgctg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58834472 gctgacaagctaactgggaagttctggcgtgcgctcctcagtaaagcttatgacttgctg 58834531
Query: 715 gataaggt 722
||||||||
Sbjct: 58834532 gataaggt 58834539
Score = 248 bits (125), Expect = 9e-63
Identities = 128/129 (99%)
Strand = Plus / Plus
Query: 260 aggatgccattttagaggcagacactgaattttggatttcagtctgttgtgaattcagtg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58830031 aggatgccattttagaggcagacactgaattttggatttcagtctgttgtgaattcagtg 58830090
Query: 320 tccagcatcagatacaaagcttgatgaatatcctcgagtacttactaaagctgccggagg 379
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 58830091 tccagcatcagatacaaagcttgatgaatatcctcgagtacttactaaaactgccggagg 58830150
Query: 380 agaaagaag 388
|||||||||
Sbjct: 58830151 agaaagaag 58830159
Score = 186 bits (94), Expect = 3e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1595 agagtgatctggaggaagttggaagaacggaagaatatatcatcgactgtctcgtggcca 1654
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 58838728 agagtgatctggaggaagttggaagaacggaagattatatcatcgactgtctcgtggcca 58838787
Query: 1655 tggttgtaaaactttctgaggtcacattcagacccctg 1692
||||||||||||||||||||||||||||||||||||||
Sbjct: 58838788 tggttgtaaaactttctgaggtcacattcagacccctg 58838825
Score = 101 bits (51), Expect = 1e-18
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 548 aggttgttgaaagtggcggtcctcaggttttgacaggccttgaacagaggt 598
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58834257 aggttgttgaaagtggcggtcctcaggttttgacaggccttgaacagaggt 58834307
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 gtgaaaatggttattccagcacttattcag 30
||||||||||||||||||||||||||||||
Sbjct: 58827021 gtgaaaatggttattccagcacttattcag 58827050
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,769,254
Number of extensions: 288
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 12
Length of query: 1718
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1696
Effective length of database: 2,808,408,574
Effective search space: 4763060941504
Effective search space used: 4763060941504
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)