Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855781.1| PREDICTED: similar to RING finger and CHY zinc ... 276 3e-74
Alignment gi|XP_848287.1| PREDICTED: similar to RING finger and CHY zinc ... 276 3e-74
Alignment gi|XP_855704.1| PREDICTED: similar to ring finger and CHY zinc ... 249 4e-66
Alignment gi|XP_544932.2| PREDICTED: similar to RING finger and CHY zinc ... 226 4e-59
>ref|XP_855781.1| PREDICTED: similar to RING finger and CHY zinc finger domain
containing protein 1 (Zinc finger protein 363) (CH-rich
interacting match with PLAG1) (Androgen receptor
N-terminal-interacting protein) isoform 3 [Canis
familiaris].
Length = 132
Score = 276 bits (705), Expect = 3e-74
Identities = 129/134 (96%), Positives = 130/134 (97%)
Frame = +3
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQGKHKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHRTCYEEMLKEGYRCPLCM
Sbjct: 1 MNLQGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 60
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCN RSTVQFHILGMKCNICESYN
Sbjct: 61 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNRRSTVQFHILGMKCNICESYN 120
Query: 876 TAQAGGCRISLDQQ 917
TAQA RISLDQQ
Sbjct: 121 TAQAK--RISLDQQ 132
>ref|XP_848287.1| PREDICTED: similar to RING finger and CHY zinc finger domain
containing protein 1 (Zinc finger protein 363) (CH-rich
interacting match with PLAG1) (Androgen receptor
N-terminal-interacting protein) isoform 1 [Canis
familiaris].
Length = 132
Score = 276 bits (705), Expect = 3e-74
Identities = 129/134 (96%), Positives = 130/134 (97%)
Frame = +3
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQGKHKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHRTCYEEMLKEGYRCPLCM
Sbjct: 1 MNLQGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 60
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCN RSTVQFHILGMKCNICESYN
Sbjct: 61 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNRRSTVQFHILGMKCNICESYN 120
Query: 876 TAQAGGCRISLDQQ 917
TAQA RISLDQQ
Sbjct: 121 TAQAK--RISLDQQ 132
>ref|XP_855704.1| PREDICTED: similar to ring finger and CHY zinc finger domain
containing 1 isoform 3 isoform 2 [Canis familiaris].
Length = 123
Score = 249 bits (635), Expect = 4e-66
Identities = 120/134 (89%), Positives = 121/134 (90%)
Frame = +3
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQGKHKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHR GYRCPLCM
Sbjct: 1 MNLQGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------GYRCPLCM 51
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCN RSTVQFHILGMKCNICESYN
Sbjct: 52 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNRRSTVQFHILGMKCNICESYN 111
Query: 876 TAQAGGCRISLDQQ 917
TAQA RISLDQQ
Sbjct: 112 TAQAK--RISLDQQ 123
>ref|XP_544932.2| PREDICTED: similar to RING finger and CHY zinc finger domain
containing protein 1 (Zinc finger protein 363) (CH-rich
interacting match with PLAG1) (Androgen receptor
N-terminal-interacting protein) [Canis familiaris].
Length = 112
Score = 226 bits (575), Expect = 4e-59
Identities = 97/104 (93%), Positives = 99/104 (95%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG RG+E G RGCEHYDRGCLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGARGREQGLRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIG 467
IQHAQQ CEECSTLFGEYYCSICHLFDKDKKQYHCENCGICR G
Sbjct: 68 IQHAQQSCEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRNG 111
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,271,203
Number of extensions: 965359
Number of successful extensions: 3594
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 4
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-014863
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077223.1| RING finger and CHY zinc finger domain-conta... 529 e-150
Alignment gi|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos... 54 3e-07
Alignment gi|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos ta... 54 3e-07
>ref|NP_001077223.1| RING finger and CHY zinc finger domain-containing protein 1 [Bos
taurus].
Length = 261
Score = 529 bits (1363), Expect = e-150
Identities = 237/254 (93%), Positives = 242/254 (95%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG RGQ RRGCEHYDRGCLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGARGQAQRRRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
IQHAQQ CEECSTLFGEYYCS+CHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA
Sbjct: 68 IQHAQQTCEECSTLFGEYYCSVCHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQGKHKCIENVSRQNCPICLEDIHTSRI A VLPCGHLLHRTCYE+MLKEGYRCPLCM
Sbjct: 128 MNLQGKHKCIENVSRQNCPICLEDIHTSRIAAQVLPCGHLLHRTCYEDMLKEGYRCPLCM 187
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
SALDM+R WRQ DDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN
Sbjct: 188 RSALDMSRSWRQRDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 247
Query: 876 TAQAGGCRISLDQQ 917
TAQAG RIS+DQQ
Sbjct: 248 TAQAGKYRISIDQQ 261
>ref|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos taurus].
Length = 393
Score = 53.5 bits (127), Expect = 3e-07
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +3
Query: 549 NVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWR 728
+V ++C +C+E+ R V +LPC H+ HR C + L + CP+C + YW
Sbjct: 256 DVDAESCAVCIENFK-GRDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWG 314
Query: 729 QLDD 740
+L+D
Sbjct: 315 ELED 318
>ref|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos taurus].
Length = 393
Score = 53.5 bits (127), Expect = 3e-07
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +3
Query: 549 NVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWR 728
+V ++C +C+E+ R V +LPC H+ HR C + L + CP+C + YW
Sbjct: 256 DVDAESCAVCIENFK-GRDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWG 314
Query: 729 QLDD 740
+L+D
Sbjct: 315 ELED 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,959,094
Number of extensions: 951524
Number of successful extensions: 3581
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3548
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090959.1| Pirh2 [Sus scrofa]. 566 e-162
>ref|NP_001090959.1| Pirh2 [Sus scrofa].
Length = 261
Score = 566 bits (1458), Expect = e-162
Identities = 253/254 (99%), Positives = 253/254 (99%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA
Sbjct: 68 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQGKHKCIENVSRQNCPICLEDIHTS IVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM
Sbjct: 128 MNLQGKHKCIENVSRQNCPICLEDIHTSHIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 187
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN
Sbjct: 188 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 247
Query: 876 TAQAGGCRISLDQQ 917
TAQAGGCRISLDQQ
Sbjct: 248 TAQAGGCRISLDQQ 261
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,653,356
Number of extensions: 600479
Number of successful extensions: 2252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2231
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080833.1| RING finger and CHY zinc finger domain-containi... 518 e-147
Alignment gi|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor... 52 8e-07
>ref|NP_080833.1| RING finger and CHY zinc finger domain-containing protein 1 [Mus
musculus].
Length = 261
Score = 518 bits (1335), Expect = e-147
Identities = 228/254 (89%), Positives = 240/254 (94%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG R G RGCEHYDR CLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
+QHAQQ CE+CSTLFGEYYCSICHLFDKDK+QYHCE+CGICRIGPKEDFFHCLKCNLCL
Sbjct: 68 LQHAQQTCEDCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
NL+GKHKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHRTCYEEMLKEGYRCPLCM
Sbjct: 128 TNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 187
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLD EVAQTPMPSEYQN+TVDILCNDCNGRSTVQFHILGMKC +C+SYN
Sbjct: 188 HSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYN 247
Query: 876 TAQAGGCRISLDQQ 917
TAQAGG R+ +DQQ
Sbjct: 248 TAQAGGRRVPVDQQ 261
>ref|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor [Mus musculus].
Length = 394
Score = 52.0 bits (123), Expect = 8e-07
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 549 NVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWR 728
+V +NC +C+E+ ++ +LPC H+ HR C + L + CP+C + YW
Sbjct: 259 DVDAENCAVCIENFKVKDVI-RILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWG 317
Query: 729 QLDDEVAQTPMP 764
+D + P P
Sbjct: 318 DPED-TQELPTP 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,717,505
Number of extensions: 848095
Number of successful extensions: 3508
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3456
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056251.2| RING finger and CHY zinc finger domain-containi... 545 e-155
Alignment gi|NP_001009922.1| RING finger and CHY zinc finger domain-conta... 518 e-147
Alignment gi|NP_001008925.1| RING finger and CHY zinc finger domain-conta... 375 e-110
Alignment gi|NP_775918.2| E3 ubiquitin-protein ligase RNF149 precursor [H... 54 3e-07
>ref|NP_056251.2| RING finger and CHY zinc finger domain-containing protein 1 isoform
1 [Homo sapiens].
Length = 261
Score = 545 bits (1405), Expect = e-155
Identities = 243/254 (95%), Positives = 247/254 (97%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG GQE G+RGCEHYDRGCLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
IQHAQQ CEECSTLFGEYYC ICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA
Sbjct: 68 IQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQG+HKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHRTCYEEMLKEGYRCPLCM
Sbjct: 128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 187
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC ICESYN
Sbjct: 188 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYN 247
Query: 876 TAQAGGCRISLDQQ 917
TAQAGG RISLDQQ
Sbjct: 248 TAQAGGRRISLDQQ 261
>ref|NP_001009922.1| RING finger and CHY zinc finger domain-containing protein 1 isoform
3 [Homo sapiens].
Length = 252
Score = 518 bits (1335), Expect = e-147
Identities = 234/254 (92%), Positives = 238/254 (93%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG GQE G+RGCEHYDRGCLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
IQHAQQ CEECSTLFGEYYC ICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA
Sbjct: 68 IQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM 695
MNLQG+HKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHR GYRCPLCM
Sbjct: 128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------GYRCPLCM 178
Query: 696 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCNICESYN 875
HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC ICESYN
Sbjct: 179 HSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYN 238
Query: 876 TAQAGGCRISLDQQ 917
TAQAGG RISLDQQ
Sbjct: 239 TAQAGGRRISLDQQ 252
>ref|NP_001008925.1| RING finger and CHY zinc finger domain-containing protein 1 isoform
2 [Homo sapiens].
Length = 200
Score = 375 bits (964), Expect(2) = e-110
Identities = 163/172 (94%), Positives = 167/172 (97%)
Frame = +3
Query: 156 DGGRGQEHGRRGCEHYDRGCLLKAPCCDKLYTCRLCHDSNEDHQLDRFKVKEVQCINCEK 335
DG GQE G+RGCEHYDRGCLLKAPCCDKLYTCRLCHD+NEDHQLDRFKVKEVQCINCEK
Sbjct: 8 DGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEK 67
Query: 336 IQHAQQICEECSTLFGEYYCSICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 515
IQHAQQ CEECSTLFGEYYC ICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA
Sbjct: 68 IQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLA 127
Query: 516 MNLQGKHKCIENVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKE 671
MNLQG+HKCIENVSRQNCPICLEDIHTSR+VAHVLPCGHLLHRTCYEEMLKE
Sbjct: 128 MNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE 179
Score = 43.5 bits (101), Expect(2) = e-110
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2
Query: 668 RRLQMSIMYALCFRYD*VLETAG 736
+ LQMSIMYALCFRYD VLETAG
Sbjct: 178 KELQMSIMYALCFRYDQVLETAG 200
>ref|NP_775918.2| E3 ubiquitin-protein ligase RNF149 precursor [Homo sapiens].
Length = 400
Score = 53.5 bits (127), Expect = 3e-07
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 549 NVSRQNCPICLEDIHTSRIVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHSALDMTRYWR 728
+V +NC +C+E+ I+ +LPC H+ HR C + L + CP+C + YW
Sbjct: 263 DVDAENCAVCIENFKVKDII-RILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWG 321
Query: 729 QLDDEVAQTPMP 764
+ D V + P P
Sbjct: 322 EPGD-VQEMPAP 332
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,998,197
Number of extensions: 978988
Number of successful extensions: 4139
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4046
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014863
(1058 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 519 e-145
>Sscrofa_Chr08
|| Length = 148491826
Score = 519 bits (262), Expect = e-145
Identities = 265/266 (99%)
Strand = Plus / Minus
Query: 792 attctctgcaatgattgcaatggaagatctacagtccagttccatatattaggcatgaaa 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75355911 attctctgcaatgattgcaatggaagatctacagtccagttccatatattaggcatgaaa 75355852
Query: 852 tgtaacatttgtgaatcgtacaatactgctcaggctggaggatgtagaatttcattagat 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75355851 tgtaacatttgtgaatcgtacaatactgctcaggctggaggatgtagaatttcattagat 75355792
Query: 912 cagcagtgagcagcctgtgcttcactggaaaactcagcattttctgatacagaaaaaggc 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75355791 cagcagtgagcagcctgtgcttcactggaaaactcagcattttctgatacagaaaaaggc 75355732
Query: 972 tatctttttgtcaatgcgtcaatctatgcagtagagctgatgtgttttgtactaatgtca 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 75355731 tatctttttgtcaatgcgtcaatctatgcagtagagctgatgtgttttgtactagtgtca 75355672
Query: 1032 cagcataaaatcatattacaagactt 1057
||||||||||||||||||||||||||
Sbjct: 75355671 cagcataaaatcatattacaagactt 75355646
Score = 402 bits (203), Expect = e-109
Identities = 217/224 (96%)
Strand = Plus / Plus
Query: 2 acgtgtccctccgccatcttggctctgctggcagcagcagccaggannnnnnntgctgga 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 75324665 acgtgtccctccgccatcttggctctgctggcagcagcagccaggagggggggtgctgga 75324724
Query: 62 gcagagctgggtctctggacgtagttttcatcctgggggaaggggccgtggagtttgaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75324725 gcagagctgggtctctggacgtagttttcatcctgggggaaggggccgtggagtttgaga 75324784
Query: 122 ggctgtggaagagatggcggcctcggcgcgggaagatggcggccgcgggcaggagcacgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75324785 ggctgtggaagagatggcggcctcggcgcgggaagatggcggccgcgggcaggagcacgg 75324844
Query: 182 acggcggggctgcgagcactatgacagaggatgcctcctgaagg 225
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75324845 acggcggggctgcgagcactatgacagaggatgcctcctgaagg 75324888
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 223 aggcaccttgctgtgacaagctttatacttgccggttgtgtcatgatagcaatgaagatc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368608 aggcaccttgctgtgacaagctttatacttgccggttgtgtcatgatagcaatgaagatc 75368549
Query: 283 atcagctagatcgctttaaagtaaaggaagtgcagtgcataaactgtgaaaaaattcaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75368548 atcagctagatcgctttaaagtaaaggaagtgcagtgcataaactgtgaaaaaattcaac 75368489
Query: 343 atg 345
|||
Sbjct: 75368488 atg 75368486
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 671 aggctacagatgtccattatgtatgcactctgctttagatatgactaggtactggagaca 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75358438 aggctacagatgtccattatgtatgcactctgctttagatatgactaggtactggagaca 75358379
Query: 731 gctggatgatgaggtagcacagactcctatgccatcagagtatcagaacatgactgtgga 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75358378 gctggatgatgaggtagcacagactcctatgccatcagagtatcagaacatgactgtgga 75358319
Query: 791 t 791
|
Sbjct: 75358318 t 75358318
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 458 taggattggtccaaaggaagattttttccactgtttgaaatgtaacttatgcctagcaat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75361185 taggattggtccaaaggaagattttttccactgtttgaaatgtaacttatgcctagcaat 75361126
Query: 518 gaatctccaaggaaagcacaag 539
||||||||||||||||||||||
Sbjct: 75361125 gaatctccaaggaaagcacaag 75361104
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 583 aggacattcatacatcccgtattgttgctcacgtcttgccatgtggacatcttttacata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75359532 aggacattcatacatcccgtattgttgctcacgtcttgccatgtggacatcttttacata 75359473
Query: 643 g 643
|
Sbjct: 75359472 g 75359472
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 538 agtgtattgaaaatgtttcccggcagaattgtccaatatgtttggagg 585
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75359686 agtgtattgaaaatgtttcccggcagaattgtccaatatgtttggagg 75359639
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,072,254
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 7
Length of query: 1058
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1037
Effective length of database: 2,808,413,156
Effective search space: 2912324442772
Effective search space used: 2912324442772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)