Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533946.2| PREDICTED: similar to Jumonji domain containing... 826 0.0
Alignment gi|XP_531930.2| PREDICTED: similar to jumonji domain containing... 474 e-133
Alignment gi|XP_862894.1| PREDICTED: similar to Jumonji domain containing... 454 e-127
Alignment gi|XP_851005.1| PREDICTED: similar to Jumonji domain containing... 452 e-127
Alignment gi|XP_862943.1| PREDICTED: similar to Jumonji domain containing... 451 e-126
Alignment gi|XP_539647.2| PREDICTED: similar to Jumonji domain containing... 443 e-124
Alignment gi|XP_861947.1| PREDICTED: similar to bromodomain and PHD finge... 127 3e-29
Alignment gi|XP_861925.1| PREDICTED: similar to bromodomain and PHD finge... 127 3e-29
Alignment gi|XP_861899.1| PREDICTED: similar to bromodomain and PHD finge... 127 3e-29
Alignment gi|XP_850615.1| PREDICTED: similar to bromodomain and PHD finge... 127 3e-29
>ref|XP_533946.2| PREDICTED: similar to Jumonji domain containing protein 2B [Canis
familiaris].
Length = 1202
Score = 826 bits (2133), Expect = 0.0
Identities = 390/413 (94%), Positives = 399/413 (96%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTLFYPYSQSLQTEKE PQASLGEGPSA PPSKSGQKTRPLIPEMCF SSGENT PL
Sbjct: 790 CAICTLFYPYSQSLQTEKEAPQASLGEGPSAAPPSKSGQKTRPLIPEMCFTSSGENTEPL 849
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRC AHAWTAECCLCNLR
Sbjct: 850 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCTAHAWTAECCLCNLR 909
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ TTDRRWIHVICAIAVPEVRFLNV+ERHPVDISAIPEQRWKLKCVYCRKRMKKVS
Sbjct: 910 GGALQKTTDRRWIHVICAIAVPEVRFLNVIERHPVDISAIPEQRWKLKCVYCRKRMKKVS 969
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRAVSLGQ 721
GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSH VQ LRAVSLGQ
Sbjct: 970 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHTVQFLRAVSLGQ 1029
Query: 722 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 901
+VITKNRNGLYYRCRVIGT+ QTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV
Sbjct: 1030 MVITKNRNGLYYRCRVIGTSAQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 1089
Query: 902 ELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVSTG 1081
ELRW DGN+Y+A+FISSVTSH+YQVEFEDGSQL VKRGD+FTLDEELPKRVRSRLS+STG
Sbjct: 1090 ELRWADGNMYKARFISSVTSHVYQVEFEDGSQLMVKRGDIFTLDEELPKRVRSRLSLSTG 1149
Query: 1082 APQENVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCRPGASF 1240
APQEN FSGEEVKAAKRPRVGTPRA EDSGRNPDYLAFMESLLQAQCRPGA F
Sbjct: 1150 APQENTFSGEEVKAAKRPRVGTPRAPEDSGRNPDYLAFMESLLQAQCRPGAPF 1202
>ref|XP_531930.2| PREDICTED: similar to jumonji domain containing 2C [Canis
familiaris].
Length = 1053
Score = 474 bits (1219), Expect = e-133
Identities = 229/413 (55%), Positives = 295/413 (71%), Gaps = 5/413 (1%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAIC L PY + + +E + P G KT+PLIPEMCFI S EN
Sbjct: 642 CAICALLMPYYKPDSSNEENDSRWETKLDEVVTP---GGKTKPLIPEMCFIYSEENIEYS 698
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
P N+++ +DGTSLLI+CAKCC++VHASCYGI + +GW C+RC +AWTAECCLCNLR
Sbjct: 699 PPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLCNLR 758
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+KKVS
Sbjct: 759 GGALKETKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIFCRHRVKKVS 818
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVL---RAVS 712
GACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+HK + NV+ + +S
Sbjct: 819 GACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKV-NPNVKSKAGEKGIS 877
Query: 713 LGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEG 892
+GQ VITK+RN YY CRVI T+QTFYEV FDDGS+S + +PE I SRDCV+LGPP EG
Sbjct: 878 VGQTVITKHRNTRYYSCRVIAVTSQTFYEVVFDDGSFSRDTFPEDIVSRDCVKLGPPAEG 937
Query: 893 EFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSV 1072
E V+++W DG +Y AK++ S +H+YQVEFEDGSQ+ +KR D++TLDEELPKRV++R S
Sbjct: 938 EVVQVKWPDGKLYGAKYLGSNVAHMYQVEFEDGSQIAMKREDIYTLDEELPKRVKARFST 997
Query: 1073 STGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
++ E+ F G ++ KR R+ + R + +P Y F++S Q +C+
Sbjct: 998 ASDMRFEDTFYGADIIQGEKKRQRMLSSRFKNEYVDDPVYRTFLKSSFQKKCQ 1050
>ref|XP_862894.1| PREDICTED: similar to Jumonji domain containing protein 2A isoform 3
[Canis familiaris].
Length = 1079
Score = 454 bits (1168), Expect = e-127
Identities = 221/412 (53%), Positives = 292/412 (70%), Gaps = 12/412 (2%)
Frame = +2
Query: 2 CAICTLFYPYSQS------LQTEKETPQASLGE---GPSATPPSKSGQKTRPLIPEMCFI 154
CA+C +F Y Q L + +P+ S G +A P K Q+T+PLIPEMCF
Sbjct: 670 CAVCMIFQTYHQVSPLHPLLLSRASSPEGSESRWEAGNTALAPQK--QRTKPLIPEMCFT 727
Query: 155 SSGENTGPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWT 334
S+G +T + Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A
Sbjct: 728 STGCSTDINLSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPTKASEDWMCSRCSANALE 787
Query: 335 AECCLCNLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVY 514
+CCLC+LRGGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+
Sbjct: 788 EDCCLCSLRGGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVF 847
Query: 515 CRKRMKKVSGACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHN 688
C+KR K+ +G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK +
Sbjct: 848 CKKRRKRTAGCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERA 907
Query: 689 VQVLRAVSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCV 868
L++++ GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC+
Sbjct: 908 KGALQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCL 967
Query: 869 RLGPPPEGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPK 1048
+LGPP EGE V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPK
Sbjct: 968 QLGPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPK 1027
Query: 1049 RVRSRLSVSTGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
RV+SRLSV++ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1028 RVKSRLSVASDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1079
>ref|XP_851005.1| PREDICTED: similar to Jumonji domain containing protein 2A isoform 2
[Canis familiaris].
Length = 1066
Score = 452 bits (1163), Expect = e-127
Identities = 221/403 (54%), Positives = 288/403 (71%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G SA P K Q+T+PLIPEMCF S+G +T
Sbjct: 670 CAVCMIFQTYHQ---VEFGGLSQSCGN-TSALAPQK--QRTKPLIPEMCFTSTGCSTDIN 723
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 724 LSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPTKASEDWMCSRCSANALEEDCCLCSLR 783
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 784 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRTA 843
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L++++
Sbjct: 844 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITA 903
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++LGPP EGE
Sbjct: 904 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQLGPPAEGE 963
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 964 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1023
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1024 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1066
>ref|XP_862943.1| PREDICTED: similar to Jumonji domain containing protein 2A isoform 4
[Canis familiaris].
Length = 1062
Score = 451 bits (1159), Expect = e-126
Identities = 220/403 (54%), Positives = 287/403 (71%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q S G SA P K Q+T+PLIPEMCF S+G +T
Sbjct: 670 CAVCMIFQTYHQR-------GLISCGN-TSALAPQK--QRTKPLIPEMCFTSTGCSTDIN 719
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 720 LSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPTKASEDWMCSRCSANALEEDCCLCSLR 779
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 780 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRTA 839
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L++++
Sbjct: 840 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITA 899
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++LGPP EGE
Sbjct: 900 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQLGPPAEGE 959
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 960 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1019
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1020 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1062
>ref|XP_539647.2| PREDICTED: similar to Jumonji domain containing protein 2A isoform 1
[Canis familiaris].
Length = 1095
Score = 443 bits (1140), Expect = e-124
Identities = 223/432 (51%), Positives = 291/432 (67%), Gaps = 32/432 (7%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G SA P K Q+T+PLIPEMCF S+G +T
Sbjct: 670 CAVCMIFQTYHQ---VEFGGLSQSCGN-TSALAPQK--QRTKPLIPEMCFTSTGCSTDIN 723
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 724 LSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPTKASEDWMCSRCSANALEEDCCLCSLR 783
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 784 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRTA 843
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK------------SGSH 685
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK +
Sbjct: 844 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLEMAEQKPAKVAE 903
Query: 686 NVQV-------------------LRAVSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNF 808
VQ+ L++++ GQ VI+K++NG +Y+C V+ TT+TFYEVNF
Sbjct: 904 KVQMEATGGGSGASIFFQRAKGALQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNF 963
Query: 809 DDGSYSDNLYPESITSRDCVRLGPPPEGEFVELRWTDGNIYRAKFISSVTSHIYQVEFED 988
DDGS+SDNLYPE I S+DC++LGPP EGE V++RWTDG +Y AKF++S +YQVEFED
Sbjct: 964 DDGSFSDNLYPEDIVSQDCLQLGPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFED 1023
Query: 989 GSQLTVKRGDLFTLDEELPKRVRSRLSVSTGAPQENVFSGEEVK-AAKRPRVGTPRAAED 1165
GSQL VKR D++TLDEELPKRV+SRLSV++ +F+ +EVK KR RV R ED
Sbjct: 1024 GSQLVVKRDDVYTLDEELPKRVKSRLSVASDMRFNEIFTEKEVKQEKKRQRVINSRYRED 1083
Query: 1166 SGRNPDYLAFME 1201
Y A ME
Sbjct: 1084 YIEPALYRAIME 1095
>ref|XP_861947.1| PREDICTED: similar to bromodomain and PHD finger-containing protein
1 isoform 2 isoform 10 [Canis familiaris].
Length = 1199
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_861925.1| PREDICTED: similar to bromodomain and PHD finger-containing protein
1 isoform 2 isoform 9 [Canis familiaris].
Length = 1195
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_861899.1| PREDICTED: similar to bromodomain and PHD finger-containing protein
1 isoform 2 isoform 8 [Canis familiaris].
Length = 1183
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_850615.1| PREDICTED: similar to bromodomain and PHD finger-containing protein
1 isoform 1 isoform 2 [Canis familiaris].
Length = 1220
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,242,456
Number of extensions: 2212986
Number of successful extensions: 13394
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 13206
Number of HSP's successfully gapped: 34
Length of query: 530
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 423
Effective length of database: 15,307,552
Effective search space: 6475094496
Effective search space used: 6475094496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-014865
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002688966.1| PREDICTED: KIAA0876 protein-like [Bos taurus]. 824 0.0
Alignment gi|XP_584880.3| PREDICTED: jumonji domain containing 2B [Bos ta... 824 0.0
Alignment gi|XP_002689641.1| PREDICTED: lysine (K)-specific demethylase 4... 469 e-132
Alignment gi|XP_615781.5| PREDICTED: jumonji domain containing 2C isoform... 469 e-132
Alignment gi|NP_001193245.1| lysine-specific demethylase 4A [Bos taurus]. 454 e-127
Alignment gi|XP_002686482.1| PREDICTED: lysine (K)-specific demethylase 4... 454 e-127
Alignment gi|NP_001193018.1| peregrin [Bos taurus]. 127 3e-29
Alignment gi|XP_002696930.1| PREDICTED: bromodomain and PHD finger contai... 127 3e-29
Alignment gi|XP_002696929.1| PREDICTED: bromodomain and PHD finger contai... 127 3e-29
Alignment gi|XP_002702777.1| PREDICTED: bromodomain and PHD finger contai... 127 3e-29
>ref|XP_002688966.1| PREDICTED: KIAA0876 protein-like [Bos taurus].
Length = 1082
Score = 824 bits (2129), Expect = 0.0
Identities = 390/413 (94%), Positives = 400/413 (96%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTLFYPYSQSLQTEKE PQA+LGEG SA PPS+SGQKTRPLIPEMCF +SGENT PL
Sbjct: 670 CAICTLFYPYSQSLQTEKEAPQAALGEGSSAIPPSRSGQKTRPLIPEMCFTASGENTEPL 729
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
PANSYIGDDGTS LIACAKCCLQVHASCYGIRPELVNEGWTCSRC AHAWTAECCLCNLR
Sbjct: 730 PANSYIGDDGTSPLIACAKCCLQVHASCYGIRPELVNEGWTCSRCTAHAWTAECCLCNLR 789
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQMTTDRRW+HVICAIAVPEVRFLNVMERHPVDIS IPEQRWKLKCVYCRKRMKKVS
Sbjct: 790 GGALQMTTDRRWVHVICAIAVPEVRFLNVMERHPVDISGIPEQRWKLKCVYCRKRMKKVS 849
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRAVSLGQ 721
GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSG H+VQV+RAVSLGQ
Sbjct: 850 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGGHSVQVMRAVSLGQ 909
Query: 722 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 901
VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDC RLGPPPEGEFV
Sbjct: 910 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCARLGPPPEGEFV 969
Query: 902 ELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVSTG 1081
ELRWTDGN+YRAKFISSVTSHIYQVEFEDGSQLTVKRGD+FTLDEELPKRVRSRLSVSTG
Sbjct: 970 ELRWTDGNLYRAKFISSVTSHIYQVEFEDGSQLTVKRGDIFTLDEELPKRVRSRLSVSTG 1029
Query: 1082 APQENVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCRPGASF 1240
APQE+VFSGEEVKAAKRPRVGTPRAAEDSGRNPDY AFMESLLQAQC PGA +
Sbjct: 1030 APQESVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYPAFMESLLQAQCWPGAPY 1082
>ref|XP_584880.3| PREDICTED: jumonji domain containing 2B [Bos taurus].
Length = 1082
Score = 824 bits (2129), Expect = 0.0
Identities = 390/413 (94%), Positives = 400/413 (96%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTLFYPYSQSLQTEKE PQA+LGEG SA PPS+SGQKTRPLIPEMCF +SGENT PL
Sbjct: 670 CAICTLFYPYSQSLQTEKEAPQAALGEGSSAIPPSRSGQKTRPLIPEMCFTASGENTEPL 729
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
PANSYIGDDGTS LIACAKCCLQVHASCYGIRPELVNEGWTCSRC AHAWTAECCLCNLR
Sbjct: 730 PANSYIGDDGTSPLIACAKCCLQVHASCYGIRPELVNEGWTCSRCTAHAWTAECCLCNLR 789
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQMTTDRRW+HVICAIAVPEVRFLNVMERHPVDIS IPEQRWKLKCVYCRKRMKKVS
Sbjct: 790 GGALQMTTDRRWVHVICAIAVPEVRFLNVMERHPVDISGIPEQRWKLKCVYCRKRMKKVS 849
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRAVSLGQ 721
GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSG H+VQV+RAVSLGQ
Sbjct: 850 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGGHSVQVMRAVSLGQ 909
Query: 722 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 901
VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDC RLGPPPEGEFV
Sbjct: 910 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCARLGPPPEGEFV 969
Query: 902 ELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVSTG 1081
ELRWTDGN+YRAKFISSVTSHIYQVEFEDGSQLTVKRGD+FTLDEELPKRVRSRLSVSTG
Sbjct: 970 ELRWTDGNLYRAKFISSVTSHIYQVEFEDGSQLTVKRGDIFTLDEELPKRVRSRLSVSTG 1029
Query: 1082 APQENVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCRPGASF 1240
APQE+VFSGEEVKAAKRPRVGTPRAAEDSGRNPDY AFMESLLQAQC PGA +
Sbjct: 1030 APQESVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYPAFMESLLQAQCWPGAPY 1082
>ref|XP_002689641.1| PREDICTED: lysine (K)-specific demethylase 4C [Bos taurus].
Length = 979
Score = 469 bits (1207), Expect = e-132
Identities = 231/417 (55%), Positives = 297/417 (71%), Gaps = 9/417 (2%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAIC L PY + + +E + L E + SG KT+PLIPEMCFI S EN
Sbjct: 567 CAICALLMPYYKPDSSNEENDSRWETKLDEVVT------SGGKTKPLIPEMCFIYSEENI 620
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CA+C ++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 621 EYSPPNAFLEEDGTSLLISCAECRVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 680
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMK 532
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+K
Sbjct: 681 NLRGGALKETKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCMFCRHRVK 740
Query: 533 KVSGACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRA-- 706
KVSGACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+HK + NV+ +A
Sbjct: 741 KVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKI-NPNVEKSKAGE 799
Query: 707 --VSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGP 880
+S+GQ VITK+RN YY CRVI T QTFYEV FDDGS+S + +PE I SRDCV+LGP
Sbjct: 800 KGISVGQTVITKHRNTRYYSCRVIAVTAQTFYEVVFDDGSFSRDTFPEDIVSRDCVKLGP 859
Query: 881 PPEGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRS 1060
P EGE V+++W DG +Y AK++ S +H+YQVEFEDGSQ+ +KR D++TLDEELPKRV++
Sbjct: 860 PAEGEVVQVKWPDGKLYGAKYLGSNVAHMYQVEFEDGSQIAMKREDIYTLDEELPKRVKA 919
Query: 1061 RLSVSTGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
R S ++ E+ F G ++ KR RV + R + +P Y F++S Q +C+
Sbjct: 920 RFSTASDMRFEDTFYGTDIIQGEKKRQRVLSSRFKNEYVDDPVYRTFLKSSFQKKCQ 976
>ref|XP_615781.5| PREDICTED: jumonji domain containing 2C isoform 1 [Bos taurus].
Length = 811
Score = 469 bits (1207), Expect = e-132
Identities = 231/417 (55%), Positives = 297/417 (71%), Gaps = 9/417 (2%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAIC L PY + + +E + L E + SG KT+PLIPEMCFI S EN
Sbjct: 399 CAICALLMPYYKPDSSNEENDSRWETKLDEVVT------SGGKTKPLIPEMCFIYSEENI 452
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CA+C ++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 453 EYSPPNAFLEEDGTSLLISCAECRVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 512
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMK 532
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+K
Sbjct: 513 NLRGGALKETKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCMFCRHRVK 572
Query: 533 KVSGACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRA-- 706
KVSGACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+HK + NV+ +A
Sbjct: 573 KVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKI-NPNVEKSKAGE 631
Query: 707 --VSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGP 880
+S+GQ VITK+RN YY CRVI T QTFYEV FDDGS+S + +PE I SRDCV+LGP
Sbjct: 632 KGISVGQTVITKHRNTRYYSCRVIAVTAQTFYEVVFDDGSFSRDTFPEDIVSRDCVKLGP 691
Query: 881 PPEGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRS 1060
P EGE V+++W DG +Y AK++ S +H+YQVEFEDGSQ+ +KR D++TLDEELPKRV++
Sbjct: 692 PAEGEVVQVKWPDGKLYGAKYLGSNVAHMYQVEFEDGSQIAMKREDIYTLDEELPKRVKA 751
Query: 1061 RLSVSTGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
R S ++ E+ F G ++ KR RV + R + +P Y F++S Q +C+
Sbjct: 752 RFSTASDMRFEDTFYGTDIIQGEKKRQRVLSSRFKNEYVDDPVYRTFLKSSFQKKCQ 808
>ref|NP_001193245.1| lysine-specific demethylase 4A [Bos taurus].
Length = 1066
Score = 454 bits (1167), Expect = e-127
Identities = 219/403 (54%), Positives = 287/403 (71%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G P P + Q+T+PLIPEMCF S+G +T
Sbjct: 670 CAVCMIFQTYHQ---VEFGGFGQSCGSAPDLAPQT---QRTKPLIPEMCFTSTGCSTDIN 723
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 724 LSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLR 783
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 784 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRTA 843
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L++++
Sbjct: 844 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITA 903
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++LGPP EGE
Sbjct: 904 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQLGPPAEGE 963
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 964 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1023
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1024 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1066
>ref|XP_002686482.1| PREDICTED: lysine (K)-specific demethylase 4C-like [Bos taurus].
Length = 1066
Score = 454 bits (1167), Expect = e-127
Identities = 219/403 (54%), Positives = 287/403 (71%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G P P + Q+T+PLIPEMCF S+G +T
Sbjct: 670 CAVCMIFQTYHQ---VEFGGFGQSCGSAPDLAPQT---QRTKPLIPEMCFTSTGCSTDIN 723
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTSLL++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 724 LSTPYLEEDGTSLLVSCKKCSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLR 783
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 784 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRTA 843
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L++++
Sbjct: 844 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITA 903
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++LGPP EGE
Sbjct: 904 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQLGPPAEGE 963
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 964 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1023
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1024 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1066
>ref|NP_001193018.1| peregrin [Bos taurus].
Length = 1219
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_002696930.1| PREDICTED: bromodomain and PHD finger containing, 1-like isoform 2
[Bos taurus].
Length = 1213
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_002696929.1| PREDICTED: bromodomain and PHD finger containing, 1-like isoform 1
[Bos taurus].
Length = 1219
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|XP_002702777.1| PREDICTED: bromodomain and PHD finger containing, 1-like [Bos
taurus].
Length = 1213
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,325,655
Number of extensions: 2145467
Number of successful extensions: 12844
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 12660
Number of HSP's successfully gapped: 19
Length of query: 530
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 423
Effective length of database: 14,140,958
Effective search space: 5981625234
Effective search space used: 5981625234
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353571.1| PREDICTED: lysine-specific demethylase 4C-li... 125 9e-29
Alignment gi|XP_001927497.2| PREDICTED: bromodomain and PHD finger-contai... 115 9e-26
Alignment gi|XP_003361201.1| PREDICTED: lysine-specific demethylase 4C-li... 111 1e-24
Alignment gi|XP_003357076.1| PREDICTED: protein Jade-1 isoform 2 [Sus scr... 106 4e-23
Alignment gi|XP_003129244.1| PREDICTED: protein Jade-1 isoform 1 [Sus scr... 106 4e-23
Alignment gi|XP_003123996.2| PREDICTED: protein Jade-2 [Sus scrofa]. 105 7e-23
Alignment gi|XP_003135098.1| PREDICTED: protein Jade-3 [Sus scrofa]. 100 3e-21
Alignment gi|XP_003130223.2| PREDICTED: PHD finger protein 14 [Sus scrofa]. 87 3e-17
>ref|XP_003353571.1| PREDICTED: lysine-specific demethylase 4C-like, partial [Sus scrofa].
Length = 202
Score = 125 bits (313), Expect = 9e-29
Identities = 60/126 (47%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Frame = +2
Query: 854 SRDCVRLGPPPEGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLD 1033
SRDCV+LGPP EGE V+++W DG +Y AK++ S +H+YQVEFEDGSQ+ +KR D++TLD
Sbjct: 74 SRDCVKLGPPAEGEVVQVKWPDGKLYGAKYLGSNVAHMYQVEFEDGSQIAMKREDIYTLD 133
Query: 1034 EELPKRVRSRLSVSTGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESL 1207
EELPKRV++R S ++ E+ F G ++ KR RV + R + +P Y F++S
Sbjct: 134 EELPKRVKARFSTASDMRFEDTFYGADIIQGEKKRQRVLSSRFKNEYVDDPVYRTFLKSS 193
Query: 1208 LQAQCR 1225
Q +C+
Sbjct: 194 FQKKCQ 199
>ref|XP_001927497.2| PREDICTED: bromodomain and PHD finger-containing protein 3 [Sus
scrofa].
Length = 1210
Score = 115 bits (287), Expect = 9e-26
Identities = 58/140 (41%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCA-AHAWTAECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C C + + +C LC +GGA + T+D
Sbjct: 226 SNVILFCDICNLAVHQECYGV-PYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSD 284
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
W HV+CAI +PEV F N + P++ I IP RWKL C C+ +K GA IQC
Sbjct: 285 GHWAHVVCAIWIPEVCFANTVFLEPIEGIDNIPPARWKLTCYICK---QKGLGAAIQCHK 341
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 342 VNCYTAFHVTCAQRAGLFMK 361
>ref|XP_003361201.1| PREDICTED: lysine-specific demethylase 4C-like [Sus scrofa].
Length = 177
Score = 111 bits (278), Expect = 1e-24
Identities = 56/112 (50%), Positives = 71/112 (63%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAIC L PY + + +E S E SG KT+PLIPEMCFI S EN
Sbjct: 56 CAICALLMPYYKPDSSNEEND--SRWETKLDEEVVTSGGKTKPLIPEMCFIYSEENIEYS 113
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA 337
P N+++ +DGTSLLI+CAKC ++VHASCYGI + +GW C+RC +AWTA
Sbjct: 114 PPNAFLEEDGTSLLISCAKCRVRVHASCYGIPSHEICDGWLCARCKRNAWTA 165
>ref|XP_003357076.1| PREDICTED: protein Jade-1 isoform 2 [Sus scrofa].
Length = 842
Score = 106 bits (264), Expect = 4e-23
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
Frame = +2
Query: 200 GDDGTSLLIACAKCCLQVHASCYGIRPELVNEG-WTCSRCAAHAWTAECCLCNLRGGALQ 376
G+DG ++ C KC + VH +CYGI V EG W C CA +C LC +GGA++
Sbjct: 214 GEDGNEMVF-CDKCNICVHQACYGILK--VPEGSWLCRTCALGV-QPKCLLCPKKGGAMK 269
Query: 377 MT-TDRRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGAC 550
T + +W+HV CA+ +PEV + + P+ +S IP RW L C C ++ GA
Sbjct: 270 PTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKF----GAS 325
Query: 551 IQCSCEHCSTSFHVTCAHAAG-----VLMEPDDWPYVVSITCFKHKS 676
IQCS ++C T+FHVTCA G +L E D+ + C KH S
Sbjct: 326 IQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKF--KSYCPKHSS 370
>ref|XP_003129244.1| PREDICTED: protein Jade-1 isoform 1 [Sus scrofa].
Length = 842
Score = 106 bits (264), Expect = 4e-23
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
Frame = +2
Query: 200 GDDGTSLLIACAKCCLQVHASCYGIRPELVNEG-WTCSRCAAHAWTAECCLCNLRGGALQ 376
G+DG ++ C KC + VH +CYGI V EG W C CA +C LC +GGA++
Sbjct: 214 GEDGNEMVF-CDKCNICVHQACYGILK--VPEGSWLCRTCALGV-QPKCLLCPKKGGAMK 269
Query: 377 MT-TDRRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGAC 550
T + +W+HV CA+ +PEV + + P+ +S IP RW L C C ++ GA
Sbjct: 270 PTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKF----GAS 325
Query: 551 IQCSCEHCSTSFHVTCAHAAG-----VLMEPDDWPYVVSITCFKHKS 676
IQCS ++C T+FHVTCA G +L E D+ + C KH S
Sbjct: 326 IQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKF--KSYCPKHSS 370
>ref|XP_003123996.2| PREDICTED: protein Jade-2 [Sus scrofa].
Length = 784
Score = 105 bits (262), Expect = 7e-23
Identities = 58/136 (42%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Frame = +2
Query: 200 GDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLRGGALQM 379
G+DG ++ C KC + VH +CYGI ++ W C CA +C LC RGGAL+
Sbjct: 208 GEDGNEMVF-CDKCNVCVHQACYGIL-KVPTGSWLCRTCALGV-QPKCLLCPKRGGALKP 264
Query: 380 T-TDRRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACI 553
T + +W+HV CA+ +PEV + P+ IS IP RW L C C K+ +G CI
Sbjct: 265 TRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLC----KECTGTCI 320
Query: 554 QCSCEHCSTSFHVTCA 601
QCS C T+FHVTCA
Sbjct: 321 QCSMPSCVTAFHVTCA 336
>ref|XP_003135098.1| PREDICTED: protein Jade-3 [Sus scrofa].
Length = 841
Score = 100 bits (248), Expect = 3e-21
Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Frame = +2
Query: 221 LIACAKCCLQVHASCYGIRPELVNEG-WTCSRCAAHAWTAECCLCNLRGGALQMT-TDRR 394
++ C KC + VH +CYGI V EG W C C +C LC +GGA++ T T +
Sbjct: 235 MVFCDKCNICVHQACYGILK--VPEGSWLCRSCVLGIHP-QCLLCPKKGGAMKTTRTGTK 291
Query: 395 WIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSCEH 571
W HV CA+ +PEV P+ +S IP RW L C C+ + +GACIQCS +
Sbjct: 292 WAHVSCALWIPEVSIACPERMEPITKVSHIPPSRWALVCNLCKLK----TGACIQCSVKS 347
Query: 572 CSTSFHVTCA 601
C T+FHVTCA
Sbjct: 348 CITAFHVTCA 357
>ref|XP_003130223.2| PREDICTED: PHD finger protein 14 [Sus scrofa].
Length = 890
Score = 87.0 bits (214), Expect = 3e-17
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 11/146 (7%)
Frame = +2
Query: 221 LIACAKCCLQVHASCYGI----------RPELVNEGWTCSRCAAHAWTAECCLCNLRGGA 370
+I C C + VH CYG+ E E W C C + C LC + G
Sbjct: 341 IIQCDNCGITVHEGCYGVDGESDSIMSSASENSTEPWFCDACKCGV-SPSCELCPNQDGI 399
Query: 371 LQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLK-CVYCRKRMKKVSGA 547
+ T RW+H++CA+ VP V F ++ + PV ++ + ++ K C +C +G
Sbjct: 400 FKETDAGRWVHIVCALYVPGVAFGDIDKLRPVTLTEMNYSKYGAKECSFCEDPRFARTGV 459
Query: 548 CIQCSCEHCSTSFHVTCAHAAGVLME 625
CI C C FHVTCA G+L E
Sbjct: 460 CISCDAGMCRAYFHVTCAQKEGLLSE 485
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,574,090
Number of extensions: 1392463
Number of successful extensions: 8593
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8474
Number of HSP's successfully gapped: 8
Length of query: 530
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 426
Effective length of database: 8,754,644
Effective search space: 3729478344
Effective search space used: 3729478344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_742144.1| lysine-specific demethylase 4B [Mus musculus]. 716 0.0
Alignment gi|NP_001165566.1| lysine-specific demethylase 4C isoform 2 [Mu... 475 e-134
Alignment gi|NP_659036.1| lysine-specific demethylase 4C isoform 1 [Mus m... 475 e-134
Alignment gi|NP_001155295.1| lysine-specific demethylase 4A isoform 1 [Mu... 450 e-126
Alignment gi|NP_759014.2| lysine-specific demethylase 4A isoform 2 [Mus m... 328 6e-90
Alignment gi|NP_084454.1| peregrin [Mus musculus]. 127 2e-29
Alignment gi|NP_001028446.2| bromodomain containing 1 [Mus musculus]. 123 4e-28
Alignment gi|NP_001074784.1| bromodomain and PHD finger-containing protei... 115 1e-25
Alignment gi|NP_955003.2| protein Jade-2 [Mus musculus]. 108 2e-23
Alignment gi|NP_647472.2| myeloid/lymphoid or mixed lineage-leukemia tran... 106 6e-23
>ref|NP_742144.1| lysine-specific demethylase 4B [Mus musculus].
Length = 1086
Score = 716 bits (1849), Expect = 0.0
Identities = 339/415 (81%), Positives = 372/415 (89%), Gaps = 2/415 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTLFYPYSQS+QTE+++ + PPSKSGQ+TRPLIPEMCF SSGENT PL
Sbjct: 681 CAICTLFYPYSQSVQTERDS---------AVQPPSKSGQRTRPLIPEMCFTSSGENTEPL 731
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
PANSY+G+DGTS LI+CA CCLQVHASCYG+RPEL EGWTCSRCAAHAWTAECCLCNLR
Sbjct: 732 PANSYVGEDGTSPLISCAHCCLQVHASCYGVRPELAKEGWTCSRCAAHAWTAECCLCNLR 791
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ TT+ RWIHVICAIAVPEVRFLNV+ER+PVD+SAIPEQRWKLKC+YCRKRMK+VS
Sbjct: 792 GGALQRTTEHRWIHVICAIAVPEVRFLNVIERNPVDVSAIPEQRWKLKCIYCRKRMKRVS 851
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRAVSLGQ 721
GACIQCS EHCSTSFHVTCAHAAGVLMEPDDWPYVVSITC KH++ Q+LR VSLGQ
Sbjct: 852 GACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCLKHRASGAGGQLLRTVSLGQ 911
Query: 722 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 901
+VITKNRNGLYYRCRVIGTT QTFYEVNFDDGSYSDNLYPESITSRDC+RLGPPPEGE V
Sbjct: 912 IVITKNRNGLYYRCRVIGTTAQTFYEVNFDDGSYSDNLYPESITSRDCLRLGPPPEGELV 971
Query: 902 ELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVSTG 1081
ELRWTDGN+YRA+FIS TS IYQVEFEDGSQLTVKRGD+FTL+EELPKRVRSRLS+STG
Sbjct: 972 ELRWTDGNLYRARFISMATSLIYQVEFEDGSQLTVKRGDIFTLEEELPKRVRSRLSLSTG 1031
Query: 1082 APQENVFSGEEVKAAKRPRVGTPRA--AEDSGRNPDYLAFMESLLQAQCRPGASF 1240
PQE FSG++VKAAKRPRV + A ED+GR+P+YL+FMESLLQAQ RPGA F
Sbjct: 1032 TPQEPSFSGDDVKAAKRPRVASVLATTTEDTGRSPEYLSFMESLLQAQGRPGAPF 1086
>ref|NP_001165566.1| lysine-specific demethylase 4C isoform 2 [Mus musculus].
Length = 1071
Score = 475 bits (1223), Expect = e-134
Identities = 227/412 (55%), Positives = 298/412 (72%), Gaps = 4/412 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTL PY + +++E + +SG+KT+P+IPEMCFI S EN
Sbjct: 660 CAICTLLMPYYKPDSSKEENDSRW---ETAVNEVVQSGRKTKPIIPEMCFIYSEENVDYS 716
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
P N+++ +DGTSLLI+CAKC ++VHASCYG+ V +GW C+RC +AWTAECCLCNLR
Sbjct: 717 PPNAFLEEDGTSLLISCAKCFVRVHASCYGVPSHEVCDGWLCARCKRNAWTAECCLCNLR 776
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGAL+ T + +W HVICA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+KKVS
Sbjct: 777 GGALKQTKNNQWAHVICAVAVPEVRFTNVPERTQIDVDRIPLQRLKLKCIFCRHRVKKVS 836
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
GACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+H+ S + + +A+S+
Sbjct: 837 GACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHRVNSNAKSKTCEKAISV 896
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VITK+RN YY CRVI T+QTFYEV FDDGS+S + +PE I SR+CV+LGPP EGE
Sbjct: 897 GQTVITKHRNTRYYSCRVIDVTSQTFYEVMFDDGSFSRDTFPEDIVSRNCVKLGPPAEGE 956
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
++++W DG +Y AK++ S +++YQVEFEDGSQ+ +KR D++TLDEELPKRV++R S +
Sbjct: 957 VIQVKWPDGKLYGAKYLGSNVAYMYQVEFEDGSQIAMKREDIYTLDEELPKRVKARFSTA 1016
Query: 1076 TGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
+ E+ F G +V KR RV + R + +P Y F++S Q +C+
Sbjct: 1017 SDMRFEDTFYGADVIQGERKRQRVLSSRLKNEYVDDPVYRTFLKSSFQKKCQ 1068
>ref|NP_659036.1| lysine-specific demethylase 4C isoform 1 [Mus musculus].
Length = 1054
Score = 475 bits (1223), Expect = e-134
Identities = 227/412 (55%), Positives = 298/412 (72%), Gaps = 4/412 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTL PY + +++E + +SG+KT+P+IPEMCFI S EN
Sbjct: 643 CAICTLLMPYYKPDSSKEENDSRW---ETAVNEVVQSGRKTKPIIPEMCFIYSEENVDYS 699
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
P N+++ +DGTSLLI+CAKC ++VHASCYG+ V +GW C+RC +AWTAECCLCNLR
Sbjct: 700 PPNAFLEEDGTSLLISCAKCFVRVHASCYGVPSHEVCDGWLCARCKRNAWTAECCLCNLR 759
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGAL+ T + +W HVICA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+KKVS
Sbjct: 760 GGALKQTKNNQWAHVICAVAVPEVRFTNVPERTQIDVDRIPLQRLKLKCIFCRHRVKKVS 819
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
GACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+H+ S + + +A+S+
Sbjct: 820 GACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHRVNSNAKSKTCEKAISV 879
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VITK+RN YY CRVI T+QTFYEV FDDGS+S + +PE I SR+CV+LGPP EGE
Sbjct: 880 GQTVITKHRNTRYYSCRVIDVTSQTFYEVMFDDGSFSRDTFPEDIVSRNCVKLGPPAEGE 939
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
++++W DG +Y AK++ S +++YQVEFEDGSQ+ +KR D++TLDEELPKRV++R S +
Sbjct: 940 VIQVKWPDGKLYGAKYLGSNVAYMYQVEFEDGSQIAMKREDIYTLDEELPKRVKARFSTA 999
Query: 1076 TGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
+ E+ F G +V KR RV + R + +P Y F++S Q +C+
Sbjct: 1000 SDMRFEDTFYGADVIQGERKRQRVLSSRLKNEYVDDPVYRTFLKSSFQKKCQ 1051
>ref|NP_001155295.1| lysine-specific demethylase 4A isoform 1 [Mus musculus].
Length = 1064
Score = 450 bits (1157), Expect = e-126
Identities = 217/403 (53%), Positives = 288/403 (71%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G+ A+ P+ Q+T+PLIPEMCF ++G +T
Sbjct: 668 CAVCMIFQTYHQ---VEFGAFSQSCGD---ASEPAAQTQRTKPLIPEMCFTTTGCSTDIN 721
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTS+L++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 722 LSTPYLEEDGTSMLVSCKKCSVRVHASCYGVPPAKASEEWMCSRCSANALEEDCCLCSLR 781
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 782 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRNA 841
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L +++
Sbjct: 842 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALLSITA 901
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++LGPP EGE
Sbjct: 902 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQLGPPAEGE 961
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 962 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1021
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1022 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1064
>ref|NP_759014.2| lysine-specific demethylase 4A isoform 2 [Mus musculus].
Length = 1033
Score = 328 bits (842), Expect = 6e-90
Identities = 151/285 (52%), Positives = 205/285 (71%), Gaps = 2/285 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E S G+ A+ P+ Q+T+PLIPEMCF ++G +T
Sbjct: 668 CAVCMIFQTYHQ---VEFGAFSQSCGD---ASEPAAQTQRTKPLIPEMCFTTTGCSTDIN 721
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTS+L++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 722 LSTPYLEEDGTSMLVSCKKCSVRVHASCYGVPPAKASEEWMCSRCSANALEEDCCLCSLR 781
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKCV+C+KR K+ +
Sbjct: 782 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCVFCKKRRKRNA 841
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L +++
Sbjct: 842 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALLSITA 901
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESI 850
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I
Sbjct: 902 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDI 946
>ref|NP_084454.1| peregrin [Mus musculus].
Length = 1246
Score = 127 bits (319), Expect = 2e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 286 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 344
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 345 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 401
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 402 ANCYTAFHVTCAQQAGLYMK 421
>ref|NP_001028446.2| bromodomain containing 1 [Mus musculus].
Length = 1189
Score = 123 bits (309), Expect = 4e-28
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCA-AHAWTAECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C C + A A+C LC +GGA + T D
Sbjct: 228 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRHCLQSRARPADCVLCPNKGGAFKKTDD 286
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D + IP RWKL C C+ +K GACIQC
Sbjct: 287 DRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCK---QKGVGACIQCHK 343
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 344 ANCYTAFHVTCAQKAGLYMK 363
>ref|NP_001074784.1| bromodomain and PHD finger-containing protein 3 [Mus musculus].
Length = 1204
Score = 115 bits (287), Expect = 1e-25
Identities = 58/140 (41%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCA-AHAWTAECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C C + + +C LC +GGA + T+D
Sbjct: 226 SNVILFCDICNLAVHQECYGV-PYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSD 284
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
W HV+CAI +PEV F N + P++ I IP RWKL C C+ +K GA IQC
Sbjct: 285 GHWAHVVCAIWIPEVCFANTVFLEPIEGIDNIPPARWKLTCYICK---QKGLGAAIQCHK 341
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 342 VNCYTAFHVTCAQRAGLFMK 361
>ref|NP_955003.2| protein Jade-2 [Mus musculus].
Length = 829
Score = 108 bits (269), Expect = 2e-23
Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 13/194 (6%)
Frame = +2
Query: 200 GDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLRGGALQM 379
G+DG ++ C KC + VH +CYGI ++ W C CA +C LC RGGAL+
Sbjct: 210 GEDGNEMVF-CDKCNVCVHQACYGIL-KVPTGSWLCRTCALGV-QPKCLLCPKRGGALKP 266
Query: 380 T-TDRRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACI 553
T + +W+HV CA+ +PEV + P+ IS IP RW L C C K+ +G CI
Sbjct: 267 TRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLC----KECTGTCI 322
Query: 554 QCSCEHCSTSFHVTCAHAAGVLME---PDDWPYVVSITCFKHKSG-------SHNVQVLR 703
QCS C T+FHVTCA G+ M D+ C +H G S V+ +
Sbjct: 323 QCSMPSCITAFHVTCAFDRGLEMRTILADNDEVKFKSLCQEHSDGGPRSEPTSEPVEPSQ 382
Query: 704 AV-SLGQVVITKNR 742
AV L +V + K R
Sbjct: 383 AVEDLEKVTLRKQR 396
>ref|NP_647472.2| myeloid/lymphoid or mixed lineage-leukemia translocation to 6
homolog [Mus musculus].
Length = 1079
Score = 106 bits (264), Expect = 6e-23
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Frame = +2
Query: 239 CCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAE--CCLCNLRGGALQMTTDRRWIHVIC 412
C + VH +CYGI ++ W C +C + A C LC + GAL+ T + W HV+C
Sbjct: 30 CSVAVHQACYGI-VQVPTGPWFCRKCESQERAARVRCELCPHKDGALKRTDNGGWAHVVC 88
Query: 413 AIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCR---KRMKKVSGACIQCSCEHCSTS 583
A+ +PEV+F NV+ P+ + +P R+ C C + K SGAC+ C+ C +
Sbjct: 89 ALYIPEVQFANVLTMEPIVLQYVPHDRFNKTCYICEEQGRESKAASGACMTCNRHGCRQA 148
Query: 584 FHVTCAHAAGVLMEPD 631
FHVTCA AG+L E +
Sbjct: 149 FHVTCAQMAGLLCEEE 164
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,414,193
Number of extensions: 1749165
Number of successful extensions: 9529
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 9406
Number of HSP's successfully gapped: 18
Length of query: 530
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 424
Effective length of database: 12,433,743
Effective search space: 5271907032
Effective search space used: 5271907032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055830.1| lysine-specific demethylase 4B [Homo sapiens]. 770 0.0
Alignment gi|NP_055876.2| lysine-specific demethylase 4C isoform 1 [Homo ... 471 e-133
Alignment gi|NP_001140166.1| lysine-specific demethylase 4C isoform 2 [Ho... 453 e-127
Alignment gi|NP_055478.2| lysine-specific demethylase 4A [Homo sapiens]. 447 e-125
Alignment gi|NP_001140168.1| lysine-specific demethylase 4C isoform 4 [Ho... 192 7e-49
Alignment gi|NP_001140167.1| lysine-specific demethylase 4C isoform 3 [Ho... 192 7e-49
Alignment gi|NP_004625.2| peregrin isoform 2 [Homo sapiens]. 127 3e-29
Alignment gi|NP_001003694.1| peregrin isoform 1 [Homo sapiens]. 127 3e-29
Alignment gi|NP_055392.1| bromodomain-containing protein 1 [Homo sapiens]. 123 4e-28
Alignment gi|NP_056510.2| bromodomain and PHD finger-containing protein 3... 115 1e-25
>ref|NP_055830.1| lysine-specific demethylase 4B [Homo sapiens].
Length = 1096
Score = 770 bits (1989), Expect = 0.0
Identities = 369/413 (89%), Positives = 382/413 (92%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CAICTLFYPY Q+LQTEKE P ASLGEG AT PSKS QKTRPLIPEMCF S GENT PL
Sbjct: 684 CAICTLFYPYCQALQTEKEAPIASLGEGCPATLPSKSRQKTRPLIPEMCFTSGGENTEPL 743
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
PANSYIGDDGTS LIAC KCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR
Sbjct: 744 PANSYIGDDGTSPLIACGKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 803
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQMTTDRRWIHVICAIAVPE RFLNV+ERHPVDISAIPEQRWKLKCVYCRKRMKKVS
Sbjct: 804 GGALQMTTDRRWIHVICAIAVPEARFLNVIERHPVDISAIPEQRWKLKCVYCRKRMKKVS 863
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSHNVQVLRAVSLGQ 721
GACIQCS EHCSTSFHVTCAHAAGVLMEPDDWPYVVSITC KHKSG H VQ+LRAVSLGQ
Sbjct: 864 GACIQCSYEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCLKHKSGGHAVQLLRAVSLGQ 923
Query: 722 VVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGEFV 901
VVITKNRNGLYYRCRVIG +QT YEVNFDDGSYSDNLYPESITSRDCV+LGPP EGE V
Sbjct: 924 VVITKNRNGLYYRCRVIGAASQTCYEVNFDDGSYSDNLYPESITSRDCVQLGPPSEGELV 983
Query: 902 ELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVSTG 1081
ELRWTDGN+Y+AKFISSVTSHIYQVEFEDGSQLTVKRGD+FTL+EELPKRVRSRLS+STG
Sbjct: 984 ELRWTDGNLYKAKFISSVTSHIYQVEFEDGSQLTVKRGDIFTLEEELPKRVRSRLSLSTG 1043
Query: 1082 APQENVFSGEEVKAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCRPGASF 1240
APQE FSGEE KAAKRPRVGTP A EDSGR+ DY+AF+ESLLQ Q RPGA F
Sbjct: 1044 APQEPAFSGEEAKAAKRPRVGTPLATEDSGRSQDYVAFVESLLQVQGRPGAPF 1096
>ref|NP_055876.2| lysine-specific demethylase 4C isoform 1 [Homo sapiens].
Length = 1056
Score = 471 bits (1213), Expect = e-133
Identities = 227/415 (54%), Positives = 295/415 (71%), Gaps = 7/415 (1%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAICTL PY + + +E + L E + S KT+PLIPEMCFI S EN
Sbjct: 645 CAICTLLMPYHKPDSSNEENDARWETKLDEVVT------SEGKTKPLIPEMCFIYSEENI 698
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CAKCC++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 699 EYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 758
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMK 532
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+K
Sbjct: 759 NLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIFCRHRVK 818
Query: 533 KVSGACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSH--NVQVLRA 706
+VSGACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+HK + + +
Sbjct: 819 RVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVKSKACEKV 878
Query: 707 VSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPP 886
+S+GQ VITK+RN YY CRV+ T+QTFYEV FDDGS+S + +PE I SRDC++LGPP
Sbjct: 879 ISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPA 938
Query: 887 EGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRL 1066
EGE V+++W DG +Y AK+ S +H+YQVEFEDGSQ+ +KR D++TLDEELPKRV++R
Sbjct: 939 EGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEELPKRVKARF 998
Query: 1067 SVSTGAPQENVFSGEEV--KAAKRPRVGTPRAAEDSGRNPDYLAFMESLLQAQCR 1225
S ++ E+ F G ++ KR RV + R + +P Y F++S Q +C+
Sbjct: 999 STASDMRFEDTFYGADIIQGERKRQRVLSSRFKNEYVADPVYRTFLKSSFQKKCQ 1053
>ref|NP_001140166.1| lysine-specific demethylase 4C isoform 2 [Homo sapiens].
Length = 1047
Score = 453 bits (1166), Expect = e-127
Identities = 218/386 (56%), Positives = 276/386 (71%), Gaps = 9/386 (2%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAICTL PY + + +E + L E + S KT+PLIPEMCFI S EN
Sbjct: 645 CAICTLLMPYHKPDSSNEENDARWETKLDEVVT------SEGKTKPLIPEMCFIYSEENI 698
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CAKCC++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 699 EYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 758
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMK 532
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KLKC++CR R+K
Sbjct: 759 NLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKLKCIFCRHRVK 818
Query: 533 KVSGACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHKSGSH--NVQVLRA 706
+VSGACIQCS C SFHVTCAHAAGVLMEPDDWPYVV+ITCF+HK + + +
Sbjct: 819 RVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVNITCFRHKVNPNVKSKACEKV 878
Query: 707 VSLGQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPP 886
+S+GQ VITK+RN YY CRV+ T+QTFYEV FDDGS+S + +PE I SRDC++LGPP
Sbjct: 879 ISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPA 938
Query: 887 EGEFVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRL 1066
EGE V+++W DG +Y AK+ S +H+YQVEFEDGSQ+ +KR D++TLDEELPKRV++R
Sbjct: 939 EGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKREDIYTLDEELPKRVKARF 998
Query: 1067 ----SVSTGAPQENVFSGEEVKAAKR 1132
G Q N S V A++
Sbjct: 999 VSAGRCHLGTCQVNSLSSPHVSQAQQ 1024
>ref|NP_055478.2| lysine-specific demethylase 4A [Homo sapiens].
Length = 1064
Score = 447 bits (1150), Expect = e-125
Identities = 214/403 (53%), Positives = 284/403 (70%), Gaps = 3/403 (0%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETPQASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENTGPL 181
CA+C +F Y Q E + G P Q+T+PLIPEMCF S+G +T
Sbjct: 668 CAVCMIFQTYHQ---VEFGGFNQNCGNASDLAPQK---QRTKPLIPEMCFTSTGCSTDIN 721
Query: 182 PANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLCNLR 361
+ Y+ +DGTS+L++C KC ++VHASCYG+ P +E W CSRC+A+A +CCLC+LR
Sbjct: 722 LSTPYLEEDGTSILVSCKKCSVRVHASCYGVPPAKASEDWMCSRCSANALEEDCCLCSLR 781
Query: 362 GGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKLKCVYCRKRMKKVS 541
GGALQ D RW+HV CA+A+ E RF+N+ ER PVD+S IP R+KLKC++C+KR K+ +
Sbjct: 782 GGALQRANDDRWVHVSCAVAILEARFVNIAERSPVDVSKIPLPRFKLKCIFCKKRRKRTA 841
Query: 542 GACIQCSCEHCSTSFHVTCAHAAGVLMEPDDWPYVVSITCFKHK--SGSHNVQVLRAVSL 715
G C+QCS C T+FHV+CA AAGV+M+PDDWP+VV ITCF+HK + L++++
Sbjct: 842 GCCVQCSHGRCPTAFHVSCAQAAGVMMQPDDWPFVVFITCFRHKIPNLERAKGALQSITA 901
Query: 716 GQVVITKNRNGLYYRCRVIGTTTQTFYEVNFDDGSYSDNLYPESITSRDCVRLGPPPEGE 895
GQ VI+K++NG +Y+C V+ TT+TFYEVNFDDGS+SDNLYPE I S+DC++ GPP EGE
Sbjct: 902 GQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGE 961
Query: 896 FVELRWTDGNIYRAKFISSVTSHIYQVEFEDGSQLTVKRGDLFTLDEELPKRVRSRLSVS 1075
V++RWTDG +Y AKF++S +YQVEFEDGSQL VKR D++TLDEELPKRV+SRLSV+
Sbjct: 962 VVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELPKRVKSRLSVA 1021
Query: 1076 TGAPQENVFSGEEVK-AAKRPRVGTPRAAEDSGRNPDYLAFME 1201
+ +F+ +EVK KR RV R ED Y A ME
Sbjct: 1022 SDMRFNEIFTEKEVKQEKKRQRVINSRYREDYIEPALYRAIME 1064
>ref|NP_001140168.1| lysine-specific demethylase 4C isoform 4 [Homo sapiens].
Length = 835
Score = 192 bits (488), Expect = 7e-49
Identities = 93/170 (54%), Positives = 117/170 (68%), Gaps = 3/170 (1%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAICTL PY + + +E + L E + S KT+PLIPEMCFI S EN
Sbjct: 667 CAICTLLMPYHKPDSSNEENDARWETKLDEVVT------SEGKTKPLIPEMCFIYSEENI 720
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CAKCC++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 721 EYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 780
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKL 502
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KL
Sbjct: 781 NLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKL 830
>ref|NP_001140167.1| lysine-specific demethylase 4C isoform 3 [Homo sapiens].
Length = 813
Score = 192 bits (488), Expect = 7e-49
Identities = 93/170 (54%), Positives = 117/170 (68%), Gaps = 3/170 (1%)
Frame = +2
Query: 2 CAICTLFYPYSQSLQTEKETP---QASLGEGPSATPPSKSGQKTRPLIPEMCFISSGENT 172
CAICTL PY + + +E + L E + S KT+PLIPEMCFI S EN
Sbjct: 645 CAICTLLMPYHKPDSSNEENDARWETKLDEVVT------SEGKTKPLIPEMCFIYSEENI 698
Query: 173 GPLPANSYIGDDGTSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTAECCLC 352
P N+++ +DGTSLLI+CAKCC++VHASCYGI + +GW C+RC +AWTAECCLC
Sbjct: 699 EYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTAECCLC 758
Query: 353 NLRGGALQMTTDRRWIHVICAIAVPEVRFLNVMERHPVDISAIPEQRWKL 502
NLRGGAL+ T + +W HV+CA+AVPEVRF NV ER +D+ IP QR KL
Sbjct: 759 NLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKL 808
>ref|NP_004625.2| peregrin isoform 2 [Homo sapiens].
Length = 1214
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|NP_001003694.1| peregrin isoform 1 [Homo sapiens].
Length = 1220
Score = 127 bits (319), Expect = 3e-29
Identities = 63/140 (45%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCAAHAWTA-ECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C RC A +C LC +GGA + T D
Sbjct: 287 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDD 345
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D I IP RWKL C C++R SGACIQC
Sbjct: 346 GRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR---GSGACIQCHK 402
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 403 ANCYTAFHVTCAQQAGLYMK 422
>ref|NP_055392.1| bromodomain-containing protein 1 [Homo sapiens].
Length = 1058
Score = 123 bits (309), Expect = 4e-28
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCA-AHAWTAECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C C + A A+C LC +GGA + T D
Sbjct: 228 SNVILFCDMCNLAVHQECYGV-PYIPEGQWLCRHCLQSRARPADCVLCPNKGGAFKKTDD 286
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
RW HV+CA+ +PEV F N + P+D + IP RWKL C C+ +K GACIQC
Sbjct: 287 DRWGHVVCALWIPEVGFANTVFIEPIDGVRNIPPARWKLTCYLCK---QKGVGACIQCHK 343
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 344 ANCYTAFHVTCAQKAGLYMK 363
>ref|NP_056510.2| bromodomain and PHD finger-containing protein 3 [Homo sapiens].
Length = 1205
Score = 115 bits (287), Expect = 1e-25
Identities = 58/140 (41%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Frame = +2
Query: 212 TSLLIACAKCCLQVHASCYGIRPELVNEGWTCSRCA-AHAWTAECCLCNLRGGALQMTTD 388
+++++ C C L VH CYG+ P + W C C + + +C LC +GGA + T+D
Sbjct: 226 SNVILFCDICNLAVHQECYGV-PYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSD 284
Query: 389 RRWIHVICAIAVPEVRFLNVMERHPVD-ISAIPEQRWKLKCVYCRKRMKKVSGACIQCSC 565
W HV+CAI +PEV F N + P++ I IP RWKL C C+ +K GA IQC
Sbjct: 285 GHWAHVVCAIWIPEVCFANTVFLEPIEGIDNIPPARWKLTCYICK---QKGLGAAIQCHK 341
Query: 566 EHCSTSFHVTCAHAAGVLME 625
+C T+FHVTCA AG+ M+
Sbjct: 342 VNCYTAFHVTCAQRAGLFMK 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,493,897
Number of extensions: 2136627
Number of successful extensions: 11757
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 11583
Number of HSP's successfully gapped: 19
Length of query: 530
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 423
Effective length of database: 14,770,016
Effective search space: 6247716768
Effective search space used: 6247716768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-014865
(1591 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1041 0.0
Sscrofa_Chr17 168 6e-39
>Sscrofa_Chr02
|| Length = 162569375
Score = 1041 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Plus
Query: 1067 tcggtcagcaccggggccccacaggaaaacgtcttctcgggagaggaggtgaaggccgcc 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456554 tcggtcagcaccggggccccacaggaaaacgtcttctcgggagaggaggtgaaggccgcc 74456613
Query: 1127 aagcgcccgcgggtgggcacccctcgcgccgcagaggactcggggcggaacccggactac 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456614 aagcgcccgcgggtgggcacccctcgcgccgcagaggactcggggcggaacccggactac 74456673
Query: 1187 ctggccttcatggagagcctcctgcaggctcagtgccggcccggagcctccttctaggcc 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456674 ctggccttcatggagagcctcctgcaggctcagtgccggcccggagcctccttctaggcc 74456733
Query: 1247 agccggctgcccagcgaccccctcggcccagcaaggcaggcgcggcgggccctggcgttt 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456734 agccggctgcccagcgaccccctcggcccagcaaggcaggcgcggcgggccctggcgttt 74456793
Query: 1307 gcttgctgtgtgaatccctgtcctcgcctcccccgcccgagagcctacctcggcggcggc 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456794 gcttgctgtgtgaatccctgtcctcgcctcccccgcccgagagcctacctcggcggcggc 74456853
Query: 1367 ggcgacaggagcgagcaggacgccgcacgcgcccccggactcagggagcagggccccgtg 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456854 ggcgacaggagcgagcaggacgccgcacgcgcccccggactcagggagcagggccccgtg 74456913
Query: 1427 ggctctggggggccagcgggggcacgcgccaccccttcgacccagattcgtaaaccatgt 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456914 ggctctggggggccagcgggggcacgcgccaccccttcgacccagattcgtaaaccatgt 74456973
Query: 1487 aagctcttcttctcgaaaaggtgctactgcattgcctgccccctgagcagccttggagat 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456974 aagctcttcttctcgaaaaggtgctactgcattgcctgccccctgagcagccttggagat 74457033
Query: 1547 tgtgacttctgtatataaatcacctttgtgaggttctttctataa 1591
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74457034 tgtgacttctgtatataaatcacctttgtgaggttctttctataa 74457078
Score = 444 bits (224), Expect = e-122
Identities = 227/228 (99%)
Strand = Plus / Plus
Query: 35 cagtccctacagaccgagaaggagactccccaggcctccctcggggagggcccttcggcc 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74448793 cagtccctacagaccgagaaggagactccccaggcctccctcggggagggcccttcggcc 74448852
Query: 95 acaccgccttccaaaagtggccagaagacacggccgctgatccccgagatgtgcttcatc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74448853 acaccgccttccaaaagtggccagaagacacggccgctgatccccgagatgtgcttcatc 74448912
Query: 155 tccagcggcgaaaacacagggccactccccgccaactcgtacatcggtgacgacggaacc 214
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74448913 tccagcggcgaaaacacagagccactccccgccaactcgtacatcggtgacgacggaacc 74448972
Query: 215 agcctgctgatcgcctgtgccaagtgctgcctgcaggtccacgccagt 262
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74448973 agcctgctgatcgcctgtgccaagtgctgcctgcaggtccacgccagt 74449020
Score = 367 bits (185), Expect = 1e-98
Identities = 188/189 (99%)
Strand = Plus / Plus
Query: 502 gaaatgtgtgtactgtcggaagcggatgaagaaggtgtctggcgcctgcatccagtgctc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74453708 gaaatgtgtgtactgtcggaagcggatgaagaaggtgtctggcgcctgcatccagtgctc 74453767
Query: 562 ctgtgagcactgctccacctccttccatgtgacctgtgcccacgccgccggcgtcctcat 621
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74453768 ctgcgagcactgctccacctccttccatgtgacctgtgcccacgccgccggcgtcctcat 74453827
Query: 622 ggagccagatgactggccctacgtcgtctccatcacctgcttcaagcacaagtcagggag 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74453828 ggagccagatgactggccctacgtcgtctccatcacctgcttcaagcacaagtcagggag 74453887
Query: 682 ccacaacgt 690
|||||||||
Sbjct: 74453888 ccacaacgt 74453896
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 689 gtccaggtcctgagggccgtgtccttaggccaggtggtcatcaccaagaaccgcaacggg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74453976 gtccaggtcctgagggccgtgtccttaggccaggtggtcatcaccaagaaccgcaacggg 74454035
Query: 749 ctttactaccggtgccgtgtcattggcaccaccacgcagaccttctacgaagtgaacttt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74454036 ctttactaccggtgccgtgtcattggcaccaccacgcagaccttctacgaagtgaacttt 74454095
Query: 809 gacgatgggtcctacagcgacaacctgtacccagagagcatcact 853
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74454096 gacgatgggtcctacagcgacaacctgtacccagagagcatcact 74454140
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 854 agtagagactgtgtccggctgggacccccgcccgagggcgagtttgttgagctccggtgg 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74454595 agtagagactgtgtccggctgggacccccgcccgagggcgagtttgttgagctccggtgg 74454654
Query: 914 actgacggcaacatctacagggccaagttcatttcctcagtgaccagtcacatctaccag 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74454655 actgacggcaacatctacagggccaagttcatttcctcagtgaccagtcacatctaccag 74454714
Query: 974 gtg 976
|||
Sbjct: 74454715 gtg 74454717
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 392 aggtggatccacgtgatctgcgccattgccgtccccgaagtgcggttcctgaacgtgatg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74450083 aggtggatccacgtgatctgcgccattgccgtccccgaagtgcggttcctgaacgtgatg 74450142
Query: 452 gagcgccaccccgtggacatcagcgccatccccgagcagcggtggaagctg 502
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74450143 gagcgccaccccgtggacatcagcgccatccccgagcagcggtggaagctg 74450193
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 392 aggtggatccacgtgatctgcgccattgccgtccccgaagtgcggttcctgaacgtgatg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74558666 aggtggatccacgtgatctgcgccattgccgtccccgaagtgcggttcctgaacgtgatg 74558607
Query: 452 gagcgccaccccgtggacatcagcgccatccccgagcagcggtggaagctg 502
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74558606 gagcgccaccccgtggacatcagcgccatccccgagcagcggtggaagctg 74558556
Score = 182 bits (92), Expect = 4e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 971 caggtggaattcgaggacgggtcccagctgacggtgaagcgtggcgacctcttcacgctg 1030
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 74455415 caggtggaattcgaggacgggtcccagctgacagtgaagcgtggcgacctcttcacgctg 74455474
Query: 1031 gacgaggagctccccaagagggtccggtcgcgccta 1066
||||||||||||||||||||||||||||||||||||
Sbjct: 74455475 gacgaggagctccccaagagggtccggtcgcgccta 74455510
Score = 147 bits (74), Expect = 2e-32
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 261 gttgctacggcatccgccctgagctggtcaatgagggctggacatgttcccggtgcgcgg 320
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 74449520 gttgctacggcatccgccctgagctggtcaatgagggctggacgtgttcccggtgcgcgg 74449579
Query: 321 cccacgcctggactgcgg 338
||||||||||||||||||
Sbjct: 74449580 cccacgcctggactgcgg 74449597
Score = 147 bits (74), Expect = 2e-32
Identities = 77/78 (98%)
Strand = Plus / Minus
Query: 261 gttgctacggcatccgccctgagctggtcaatgagggctggacatgttcccggtgcgcgg 320
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 74559229 gttgctacggcatccgccctgagctggtcaatgagggctggacgtgttcccggtgcgcgg 74559170
Query: 321 cccacgcctggactgcgg 338
||||||||||||||||||
Sbjct: 74559169 cccacgcctggactgcgg 74559152
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 337 ggagtgctgcctgtgcaacctccgcggaggagccctgcagatgacgacggacaggaggtg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74449880 ggagtgctgcctgtgcaacctccgcggaggagccctgcagatgacgacggacaggaggtg 74449939
Query: 397 g 397
|
Sbjct: 74449940 g 74449940
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 337 ggagtgctgcctgtgcaacctccgcggaggagccctgcagatgacgacggacaggaggtg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74558869 ggagtgctgcctgtgcaacctccgcggaggagccctgcagatgacgacggacaggaggtg 74558810
Query: 397 g 397
|
Sbjct: 74558809 g 74558809
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ctgcgccatctgtactctcttctacccatacagccag 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 74446286 ctgcgccatctgtactctcttctacccatacagccag 74446322
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1 ctgcgccatctgtactctcttctacccatacagccag 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 74562796 ctgcgccatctgtactctcttctacccatacagccag 74562760
>Sscrofa_Chr17
|| Length = 69701581
Score = 168 bits (85), Expect = 6e-39
Identities = 220/265 (83%)
Strand = Plus / Plus
Query: 239 tgctgcctgcaggtccacgccagttgctacggcatccgccctgagctggtcaatgagggc 298
|||||||||||||||||||| ||| || | ||| ||||||| |||||||||||||||
Sbjct: 17172717 tgctgcctgcaggtccacgcaggttattaatgtatcagccctgaactggtcaatgagggc 17172776
Query: 299 tggacatgttcccggtgcgcggcccacgcctggactgcggagtgctgcctgtgcaacctc 358
||||| ||| ||||||| | |||||| |||||||||| ||| |||||||| ||||||||
Sbjct: 17172777 tggacgtgtccccggtgtgtggcccatgcctggactgtagagggctgcctgggcaacctc 17172836
Query: 359 cgcggaggagccctgcagatgacgacggacaggaggtggatccacgtgatctgcgccatt 418
| || |||| ||||||| ||| || | |||||||| ||||||||||||||| |||||
Sbjct: 17172837 tgaggcagagctctgcagaggaccactgccaggaggtagatccacgtgatctgagccatc 17172896
Query: 419 gccgtccccgaagtgcggttcctgaacgtgatggagcgccaccccgtggacatcagcgcc 478
||| |||| || |||||||| |||||| |||||||||||||||| | || |||| ||
Sbjct: 17172897 gccatcccagatgtgcggtttctgaacttgatggagcgccaccctggggcagacagcacc 17172956
Query: 479 atccccgagcagcggtggaagctga 503
|| || ||||||||||| |||||||
Sbjct: 17172957 attcctgagcagcggtgcaagctga 17172981
Score = 168 bits (85), Expect = 6e-39
Identities = 220/265 (83%)
Strand = Plus / Plus
Query: 239 tgctgcctgcaggtccacgccagttgctacggcatccgccctgagctggtcaatgagggc 298
|||||||||||||||||||| ||| || | ||| ||||||| |||||||||||||||
Sbjct: 17440491 tgctgcctgcaggtccacgcaggttattaatgtatcagccctgaactggtcaatgagggc 17440550
Query: 299 tggacatgttcccggtgcgcggcccacgcctggactgcggagtgctgcctgtgcaacctc 358
||||| ||| ||||||| | |||||| |||||||||| ||| |||||||| ||||||||
Sbjct: 17440551 tggacgtgtccccggtgtgtggcccatgcctggactgtagagggctgcctgggcaacctc 17440610
Query: 359 cgcggaggagccctgcagatgacgacggacaggaggtggatccacgtgatctgcgccatt 418
| || |||| ||||||| ||| || | |||||||| ||||||||||||||| |||||
Sbjct: 17440611 tgaggcagagctctgcagaggaccactgccaggaggtagatccacgtgatctgagccatc 17440670
Query: 419 gccgtccccgaagtgcggttcctgaacgtgatggagcgccaccccgtggacatcagcgcc 478
||| |||| || |||||||| |||||| |||||||||||||||| | || |||| ||
Sbjct: 17440671 gccatcccagatgtgcggtttctgaacttgatggagcgccaccctggggcagacagcacc 17440730
Query: 479 atccccgagcagcggtggaagctga 503
|| || ||||||||||| |||||||
Sbjct: 17440731 attcctgagcagcggtgcaagctga 17440755
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,984,612
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 16
Length of query: 1591
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1569
Effective length of database: 2,808,408,574
Effective search space: 4406393052606
Effective search space used: 4406393052606
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)