Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542901.2| PREDICTED: similar to Protein KIAA1434 [Canis f... 541 e-154
>ref|XP_542901.2| PREDICTED: similar to Protein KIAA1434 [Canis familiaris].
Length = 672
Score = 541 bits (1393), Expect = e-154
Identities = 267/286 (93%), Positives = 270/286 (94%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKL HVTALKSKDLK QPFPSLKMVLE
Sbjct: 387 ADPVELFEIPVKELTFDQLQLLKLAHVTALKSKDLKESVIEEENSFSENQPFPSLKMVLE 446
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPEDVGFNIEIKWICQQRDG+WDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 447 SLPEDVGFNIEIKWICQQRDGIWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDA 506
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFENLLGINAHTEDLL
Sbjct: 507 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENLLGINAHTEDLL 566
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 567 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 626
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDAN IDNV+SA
Sbjct: 627 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANGIDNVESA 672
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,156,206
Number of extensions: 1022060
Number of successful extensions: 2008
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2008
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-015029
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692410.1| PREDICTED: CG2818-like [Bos taurus]. 543 e-154
Alignment gi|XP_001788948.1| PREDICTED: CG2818-like [Bos taurus]. 543 e-154
>ref|XP_002692410.1| PREDICTED: CG2818-like [Bos taurus].
Length = 672
Score = 543 bits (1398), Expect = e-154
Identities = 268/286 (93%), Positives = 270/286 (94%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLK QPFPSLKMVLE
Sbjct: 387 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKESMVEEENSFSENQPFPSLKMVLE 446
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 447 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDA 506
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFENLLGINAHTEDLL
Sbjct: 507 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENLLGINAHTEDLL 566
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKE GVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 567 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQ 626
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDAN IDNV+SA
Sbjct: 627 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANGIDNVESA 672
>ref|XP_001788948.1| PREDICTED: CG2818-like [Bos taurus].
Length = 660
Score = 543 bits (1398), Expect = e-154
Identities = 268/286 (93%), Positives = 270/286 (94%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLK QPFPSLKMVLE
Sbjct: 375 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKESMVEEENSFSENQPFPSLKMVLE 434
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 435 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDA 494
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFENLLGINAHTEDLL
Sbjct: 495 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENLLGINAHTEDLL 554
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKE GVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 555 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQ 614
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDAN IDNV+SA
Sbjct: 615 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANGIDNVESA 660
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,325,397
Number of extensions: 991504
Number of successful extensions: 2064
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2062
Number of HSP's successfully gapped: 2
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134290.2| PREDICTED: putative glycerophosphocholine ph... 544 e-155
>ref|XP_003134290.2| PREDICTED: putative glycerophosphocholine phosphodiesterase GPCPD1
[Sus scrofa].
Length = 673
Score = 544 bits (1401), Expect = e-155
Identities = 272/287 (94%), Positives = 272/287 (94%), Gaps = 1/287 (0%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXX-QPFPSLKMVL 179
ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLK QPFPSLKMVL
Sbjct: 387 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKGISVVEEENSLSENQPFPSLKMVL 446
Query: 180 ESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFD 359
ESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFD
Sbjct: 447 ESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFD 506
Query: 360 ADICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDL 539
ADICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFENLLGINAHTEDL
Sbjct: 507 ADICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENLLGINAHTEDL 566
Query: 540 LRNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVE 719
LRNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVE
Sbjct: 567 LRNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVE 626
Query: 720 QLERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
QLERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA
Sbjct: 627 QLERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 673
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,120,700
Number of extensions: 630615
Number of successful extensions: 1289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001036136.1| putative glycerophosphocholine phosphodieste... 518 e-147
Alignment gi|NP_083078.3| putative glycerophosphocholine phosphodiesteras... 518 e-147
Alignment gi|NP_001036137.1| putative glycerophosphocholine phosphodieste... 407 e-113
>ref|NP_001036136.1| putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 2
[Mus musculus].
Length = 675
Score = 518 bits (1334), Expect = e-147
Identities = 252/286 (88%), Positives = 265/286 (92%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKL+HVTALK+KD K QPFPSLKMVLE
Sbjct: 390 ADPVELFEIPVKELTFDQLQLLKLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMVLE 449
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPE+VGFNIEIKWICQ RDG+WDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 450 SLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDA 509
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFEN+LGINAHTEDLL
Sbjct: 510 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILGINAHTEDLL 569
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSY+QEAKAKGLVIFCWGDDTNDPENR+KLKE GVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 570 RNPSYVQEAKAKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQ 629
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELK+CLCPTVS F+PSS C EPDIHVDAN ID+V++A
Sbjct: 630 LERLKQELPELKNCLCPTVSHFIPSSFCVEPDIHVDANGIDSVENA 675
>ref|NP_083078.3| putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 2
[Mus musculus].
Length = 675
Score = 518 bits (1334), Expect = e-147
Identities = 252/286 (88%), Positives = 265/286 (92%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKL+HVTALK+KD K QPFPSLKMVLE
Sbjct: 390 ADPVELFEIPVKELTFDQLQLLKLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMVLE 449
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPE+VGFNIEIKWICQ RDG+WDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 450 SLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDA 509
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFEN+LGINAHTEDLL
Sbjct: 510 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILGINAHTEDLL 569
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSY+QEAKAKGLVIFCWGDDTNDPENR+KLKE GVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 570 RNPSYVQEAKAKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRIYDWMPEQPNIFQVEQ 629
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELK+CLCPTVS F+PSS C EPDIHVDAN ID+V++A
Sbjct: 630 LERLKQELPELKNCLCPTVSHFIPSSFCVEPDIHVDANGIDSVENA 675
>ref|NP_001036137.1| putative glycerophosphocholine phosphodiesterase GPCPD1 isoform 3
[Mus musculus].
Length = 628
Score = 407 bits (1045), Expect = e-113
Identities = 202/237 (85%), Positives = 212/237 (89%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKL+HVTALK+KD K QPFPSLKMVLE
Sbjct: 390 ADPVELFEIPVKELTFDQLQLLKLSHVTALKTKDRKQSLYEEENFFSENQPFPSLKMVLE 449
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPE+VGFNIEIKWICQ RDG+WDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 450 SLPENVGFNIEIKWICQHRDGVWDGNLSTYFDMNVFLDIILKTVLENSGKRRIVFSSFDA 509
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKSDIYPELM LRSRTTPIAMSFAQFEN+LGINAHTEDLL
Sbjct: 510 DICTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILGINAHTEDLL 569
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQ 713
RNPSY+QEAKAKGLVIFCWGDDTNDPENR+KLKE GVNGLIYDR ++ IFQ
Sbjct: 570 RNPSYVQEAKAKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRYLFFIKNFHGIFQ 626
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,493,858
Number of extensions: 883752
Number of successful extensions: 1870
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 3
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062539.1| putative glycerophosphocholine phosphodiesteras... 533 e-151
>ref|NP_062539.1| putative glycerophosphocholine phosphodiesterase GPCPD1 [Homo
sapiens].
Length = 672
Score = 533 bits (1374), Expect = e-151
Identities = 263/286 (91%), Positives = 268/286 (93%)
Frame = +3
Query: 3 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDLKXXXXXXXXXXXXXQPFPSLKMVLE 182
ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKD K QPFPSLKMVLE
Sbjct: 387 ADPVELFEIPVKELTFDQLQLLKLTHVTALKSKDRKESVVQEENSFSENQPFPSLKMVLE 446
Query: 183 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNMFLDIILKTVLENSGKRRIVFSSFDA 362
SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMN+FLDIILKTVLENSGKRRIVFSSFDA
Sbjct: 447 SLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIVFSSFDA 506
Query: 363 DICTMVRQKQNKYPILFLTQGKSDIYPELMGLRSRTTPIAMSFAQFENLLGINAHTEDLL 542
DICTMVRQKQNKYPILFLTQGKS+IYPELM LRSRTTPIAMSFAQFENLLGIN HTEDLL
Sbjct: 507 DICTMVRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQFENLLGINVHTEDLL 566
Query: 543 RNPSYIQEAKAKGLVIFCWGDDTNDPENRKKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 722
RNPSYIQEAKAKGLVIFCWGDDTNDPENR+KLKELGVNGLIYDRIYDWMPEQPNIFQVEQ
Sbjct: 567 RNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKELGVNGLIYDRIYDWMPEQPNIFQVEQ 626
Query: 723 LERLKQELPELKSCLCPTVSRFVPSSLCGEPDIHVDANSIDNVDSA 860
LERLKQELPELKSCLCPTVSRFVPSSLCGE DIHVDAN IDNV++A
Sbjct: 627 LERLKQELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA 672
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,501,663
Number of extensions: 1018033
Number of successful extensions: 2062
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2062
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015029
(1301 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1172 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1172 bits (591), Expect = 0.0
Identities = 631/639 (98%), Gaps = 4/639 (0%)
Strand = Plus / Minus
Query: 665 ttatgataggatatatgattggatgcctgaacagccaaatatattccaagtggagcagtt 724
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459590 ttattataggatatatgattggatgcctgaacagccaaatatattccaagtggagcagtt 15459531
Query: 725 agaacgcctgaagcaagaactgccagagcttaagagctgtttgtgccccactgttagtcg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459530 agaacgcctgaagcaagaactgccagagcttaagagctgtttgtgccccactgttagtcg 15459471
Query: 785 ctttgttccctcgtccttgtgtggggagcctgacatccatgtggatgccaacagcattga 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459470 ctttgttccctcgtccttgtgtggggagcctgacatccatgtggatgccaacagcattga 15459411
Query: 845 caatgtggacagtgcttagtatttgctgggcagggaccatttagggcatgcaccgctgtt 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459410 caatgtggacagtgcttagtatttgctgggcagggaccatttagggcatgcaccgctgtt 15459351
Query: 905 ctgggtattcacttttcatcactgagcattgtttatgccttttaagttttcagcccaatg 964
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 15459350 ctgggtattcacttttcatcactgagcattgtttatgccttttaagttttcagtccaatg 15459291
Query: 965 aagcaataatgaagtattttactatttcactacaactcttgctagaatttcaagtatgct 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459290 aagcaataatgaagtattttactatttcactacaactcttgctagaatttcaagtatgct 15459231
Query: 1025 atttgaaccacttggccaggtataattaccagttagtctctctacattgagaaaatgtat 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459230 atttgaaccacttggccaggtataattaccagttagtctctctacattgagaaaatgtat 15459171
Query: 1085 tggtaaatattttaaactcaatatgtaagtgtataatgttaaacaaatgtttgttaaaaa 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459170 tggtaaatattttaaactcaatatgtaagtgtataatgttaaacaaatgtttgttaaaaa 15459111
Query: 1145 tgtagcaccttgaaattaaactat-aaagtatctcatatttctacttattacagattttc 1203
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 15459110 tgtagcaccttgaaatt-aactataaaagtatctcatatttctacttattacagattttc 15459052
Query: 1204 attcgatcaggtctgaaatatttagcacttgaggaacacgactatgcataattatacctg 1263
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15459051 atttgatcaggtctgaaatatttagcacttgaggaacacgactatgcataattatacctg 15458992
Query: 1264 acccatagaaaaaat-agtacctcaaatgcatgcatttg 1301
| |||||| |||||| |||||||||||||||||||||||
Sbjct: 15458991 a-ccataggaaaaataagtacctcaaatgcatgcatttg 15458954
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 512 ggggattaatgcacatactgaagacttactcagaaacccatcctatattcaggaggcaaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466567 ggggattaatgcacatactgaagacttactcagaaacccatcctatattcaggaggcaaa 15466508
Query: 572 agctaagggactggtcatattctgctggggtgatgataccaacgatcctgaaaacagaaa 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466507 agctaagggactggtcatattctgctggggtgatgataccaacgatcctgaaaacagaaa 15466448
Query: 632 gaaattaaaggaactgggagttaatggtctaatttatgatagg 674
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466447 gaaattaaaggaactgggagttaatggtctaatttatgatagg 15466405
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 239 ggatggaatgtgggatggtaacttatcaacatattttgacatgaatatgtttttggatat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467898 ggatggaatgtgggatggtaacttatcaacatattttgacatgaatatgtttttggatat 15467839
Query: 299 aattttaaaaactgtcttggaaaattctggaaaaaggaggatagtgttttcttcatttga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467838 aattttaaaaactgtcttggaaaattctggaaaaaggaggatagtgttttcttcatttga 15467779
Query: 359 tgcagatatttgcacaatg 377
|||||||||||||||||||
Sbjct: 15467778 tgcagatatttgcacaatg 15467760
Score = 264 bits (133), Expect = 1e-67
Identities = 136/137 (99%)
Strand = Plus / Minus
Query: 377 ggttcggcaaaagcagaacaaatatccgatattatttttgactcaagggaaatctgatat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467110 ggttcggcaaaagcagaacaaatatccgatattatttttgactcaagggaaatctgatat 15467051
Query: 437 ttaccctgaactcatgggccttagatctcggacaacccccattgcaatgagctttgcaca 496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467050 ttaccctgaactcatggaccttagatctcggacaacccccattgcaatgagctttgcaca 15466991
Query: 497 gtttgaaaatctattgg 513
|||||||||||||||||
Sbjct: 15466990 gtttgaaaatctattgg 15466974
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1 atgctgatccagttgaattatttgaaattccagtaaaggaattaacatttgaccaactac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15475571 atgctgatccagttgaattatttgaaattccagtaaaggaattaacatttgaccaactac 15475512
Query: 61 agttgttgaag 71
|||||||||||
Sbjct: 15475511 agttgttgaag 15475501
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 173 ggttttagagtctctgccagaagatgtagggtttaacatagaaataaaatggatctgcca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15469572 ggttttagagtctctgccagaagatgtagggtttaacatagaaataaaatggatctgcca 15469513
Query: 233 acaaaggg 240
||||||||
Sbjct: 15469512 acaaaggg 15469505
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 113 atctgtggttgaggaagaaaattctctttctgaaaatcagccatttccttctcttaagat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15472312 atctgtggttgaggaagaaaattctctttctgaaaatcagccatttccttctcttaagat 15472253
Query: 173 ggt 175
|||
Sbjct: 15472252 ggt 15472250
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 70 agctcactcatgtgactgcactgaaatctaaggatctgaaag 111
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15474843 agctcactcatgtgactgcactgaaatctaaggatctgaaag 15474802
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,626,896
Number of extensions: 418
Number of successful extensions: 418
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 8
Length of query: 1301
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1280
Effective length of database: 2,808,413,156
Effective search space: 3594768839680
Effective search space used: 3594768839680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)