Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,086,762
Number of extensions: 765860
Number of successful extensions: 3123
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3109
Number of HSP's successfully gapped: 0
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-015088
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540384.2| PREDICTED: similar to component of oligomeric g... 575 e-164
>ref|XP_540384.2| PREDICTED: similar to component of oligomeric golgi complex 5 isoform
1 [Canis familiaris].
Length = 915
Score = 575 bits (1482), Expect = e-164
Identities = 302/332 (90%), Positives = 307/332 (92%), Gaps = 1/332 (0%)
Frame = +1
Query: 4 DAITSAPANMEG-DGGVAGAGFKALGSATAAAAVRELLQDECYSDFLNEDFDVKTYTSQS 180
D I+ APANMEG DGGVA AG ALG AAA VRELLQDECYSDFLNEDFDVKTYTSQS
Sbjct: 78 DVISPAPANMEGGDGGVAVAGHGALGCGAAAATVRELLQDECYSDFLNEDFDVKTYTSQS 137
Query: 181 IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 360
IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ
Sbjct: 138 IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 197
Query: 361 GAVDRMKAKIVEPYNKIVARTAQLARLQVACDXXXXXXXXXYLSKRLHGQLQGGSREITK 540
GAVDRMKAKIVEPYNKIVARTAQLARLQVACD YL+KRL GQLQGGSREITK
Sbjct: 198 GAVDRMKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILYLTKRLQGQLQGGSREITK 257
Query: 541 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA 720
AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA
Sbjct: 258 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA 317
Query: 721 LQVFHNLGTLKDTFTSVVDGYCATIEENINSALDIKVLTQPSQSALRGGPGRSTMPTPGN 900
LQVFHNLGTLKDT TSVVDGYCAT+EE+INSALDIKVLTQPSQSA+RGGPGRSTMPTPGN
Sbjct: 318 LQVFHNLGTLKDTITSVVDGYCATLEEHINSALDIKVLTQPSQSAVRGGPGRSTMPTPGN 377
Query: 901 TAVFRASLWDNMEKPVDHIFTVCGQVQHLQKI 996
TA FRASLW NMEK VDHI TVCGQVQHLQKI
Sbjct: 378 TAAFRASLWTNMEKLVDHICTVCGQVQHLQKI 409
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,535,467
Number of extensions: 791628
Number of successful extensions: 3322
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3304
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,597,321
Number of extensions: 486931
Number of successful extensions: 2035
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2013
Number of HSP's successfully gapped: 0
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156598.1| conserved oligomeric Golgi complex subunit 5... 531 e-151
>ref|NP_001156598.1| conserved oligomeric Golgi complex subunit 5 [Mus musculus].
Length = 829
Score = 531 bits (1367), Expect = e-151
Identities = 273/320 (85%), Positives = 291/320 (90%)
Frame = +1
Query: 37 GDGGVAGAGFKALGSATAAAAVRELLQDECYSDFLNEDFDVKTYTSQSIHQAVIAEQLAK 216
GD ++ AG A GSA AA V+ +LQD+CYS+FLNEDFDVKTYTSQSIHQAVIAEQLAK
Sbjct: 4 GDSTISVAGRGASGSAVVAATVQAILQDDCYSEFLNEDFDVKTYTSQSIHQAVIAEQLAK 63
Query: 217 LAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRMKAKIVE 396
LAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRMK+KIVE
Sbjct: 64 LAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRMKSKIVE 123
Query: 397 PYNKIVARTAQLARLQVACDXXXXXXXXXYLSKRLHGQLQGGSREITKAAQSLNELDYLS 576
PYNKIVARTAQLARLQVACD YLSKRL GQLQGGSREITKAAQSLNELDYLS
Sbjct: 124 PYNKIVARTAQLARLQVACDLLRRIIRILYLSKRLQGQLQGGSREITKAAQSLNELDYLS 183
Query: 577 QGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTALQVFHNLGTLKD 756
QGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTALQVFHNLGTLK+
Sbjct: 184 QGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTALQVFHNLGTLKE 243
Query: 757 TFTSVVDGYCATIEENINSALDIKVLTQPSQSALRGGPGRSTMPTPGNTAVFRASLWDNM 936
T TSVVDGYCA +E++IN+ALD+KVLTQPSQSA+RGGPGR+ MPTPG+TA FRASLW NM
Sbjct: 244 TVTSVVDGYCAALEDSINNALDVKVLTQPSQSAVRGGPGRAAMPTPGSTAGFRASLWTNM 303
Query: 937 EKPVDHIFTVCGQVQHLQKI 996
EK +DHI CGQVQHLQK+
Sbjct: 304 EKLMDHICAACGQVQHLQKV 323
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,183,690
Number of extensions: 667963
Number of successful extensions: 2772
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2757
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154992.1| conserved oligomeric Golgi complex subunit 5... 556 e-159
Alignment gi|NP_859422.2| conserved oligomeric Golgi complex subunit 5 is... 556 e-159
Alignment gi|NP_006339.3| conserved oligomeric Golgi complex subunit 5 is... 556 e-159
>ref|NP_001154992.1| conserved oligomeric Golgi complex subunit 5 isoform 3 [Homo
sapiens].
Length = 823
Score = 556 bits (1434), Expect = e-159
Identities = 292/332 (87%), Positives = 301/332 (90%), Gaps = 1/332 (0%)
Frame = +1
Query: 4 DAITSAPANMEGDGG-VAGAGFKALGSATAAAAVRELLQDECYSDFLNEDFDVKTYTSQS 180
D I APANMEG GG VA AG A GS AAA VRELLQD CYSDFLNEDFDVKTYTSQS
Sbjct: 23 DDINPAPANMEGGGGSVAVAGLGARGSGAAAATVRELLQDGCYSDFLNEDFDVKTYTSQS 82
Query: 181 IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 360
IHQAVIAEQLAKLAQGISQLD+ELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ
Sbjct: 83 IHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 142
Query: 361 GAVDRMKAKIVEPYNKIVARTAQLARLQVACDXXXXXXXXXYLSKRLHGQLQGGSREITK 540
GAVDR+KAKIVEPYNKIVARTAQLARLQVACD LSKRL GQLQGGSREITK
Sbjct: 143 GAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITK 202
Query: 541 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA 720
AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQG+ETQNPTQVGTA
Sbjct: 203 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGLETQNPTQVGTA 262
Query: 721 LQVFHNLGTLKDTFTSVVDGYCATIEENINSALDIKVLTQPSQSALRGGPGRSTMPTPGN 900
LQVF+NLGTLKDT TSVVDGYCAT+EENINSALDIKVLTQPSQSA+RGGPGRSTMPTPGN
Sbjct: 263 LQVFYNLGTLKDTITSVVDGYCATLEENINSALDIKVLTQPSQSAVRGGPGRSTMPTPGN 322
Query: 901 TAVFRASLWDNMEKPVDHIFTVCGQVQHLQKI 996
TA RAS W NMEK +DHI+ VCGQVQHLQK+
Sbjct: 323 TAALRASFWTNMEKLMDHIYAVCGQVQHLQKV 354
>ref|NP_859422.2| conserved oligomeric Golgi complex subunit 5 isoform 2 [Homo
sapiens].
Length = 839
Score = 556 bits (1434), Expect = e-159
Identities = 292/332 (87%), Positives = 301/332 (90%), Gaps = 1/332 (0%)
Frame = +1
Query: 4 DAITSAPANMEGDGG-VAGAGFKALGSATAAAAVRELLQDECYSDFLNEDFDVKTYTSQS 180
D I APANMEG GG VA AG A GS AAA VRELLQD CYSDFLNEDFDVKTYTSQS
Sbjct: 23 DDINPAPANMEGGGGSVAVAGLGARGSGAAAATVRELLQDGCYSDFLNEDFDVKTYTSQS 82
Query: 181 IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 360
IHQAVIAEQLAKLAQGISQLD+ELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ
Sbjct: 83 IHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 142
Query: 361 GAVDRMKAKIVEPYNKIVARTAQLARLQVACDXXXXXXXXXYLSKRLHGQLQGGSREITK 540
GAVDR+KAKIVEPYNKIVARTAQLARLQVACD LSKRL GQLQGGSREITK
Sbjct: 143 GAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITK 202
Query: 541 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA 720
AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQG+ETQNPTQVGTA
Sbjct: 203 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGLETQNPTQVGTA 262
Query: 721 LQVFHNLGTLKDTFTSVVDGYCATIEENINSALDIKVLTQPSQSALRGGPGRSTMPTPGN 900
LQVF+NLGTLKDT TSVVDGYCAT+EENINSALDIKVLTQPSQSA+RGGPGRSTMPTPGN
Sbjct: 263 LQVFYNLGTLKDTITSVVDGYCATLEENINSALDIKVLTQPSQSAVRGGPGRSTMPTPGN 322
Query: 901 TAVFRASLWDNMEKPVDHIFTVCGQVQHLQKI 996
TA RAS W NMEK +DHI+ VCGQVQHLQK+
Sbjct: 323 TAALRASFWTNMEKLMDHIYAVCGQVQHLQKV 354
>ref|NP_006339.3| conserved oligomeric Golgi complex subunit 5 isoform 1 [Homo
sapiens].
Length = 860
Score = 556 bits (1434), Expect = e-159
Identities = 292/332 (87%), Positives = 301/332 (90%), Gaps = 1/332 (0%)
Frame = +1
Query: 4 DAITSAPANMEGDGG-VAGAGFKALGSATAAAAVRELLQDECYSDFLNEDFDVKTYTSQS 180
D I APANMEG GG VA AG A GS AAA VRELLQD CYSDFLNEDFDVKTYTSQS
Sbjct: 23 DDINPAPANMEGGGGSVAVAGLGARGSGAAAATVRELLQDGCYSDFLNEDFDVKTYTSQS 82
Query: 181 IHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 360
IHQAVIAEQLAKLAQGISQLD+ELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ
Sbjct: 83 IHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQ 142
Query: 361 GAVDRMKAKIVEPYNKIVARTAQLARLQVACDXXXXXXXXXYLSKRLHGQLQGGSREITK 540
GAVDR+KAKIVEPYNKIVARTAQLARLQVACD LSKRL GQLQGGSREITK
Sbjct: 143 GAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITK 202
Query: 541 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGVETQNPTQVGTA 720
AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQG+ETQNPTQVGTA
Sbjct: 203 AAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQGLETQNPTQVGTA 262
Query: 721 LQVFHNLGTLKDTFTSVVDGYCATIEENINSALDIKVLTQPSQSALRGGPGRSTMPTPGN 900
LQVF+NLGTLKDT TSVVDGYCAT+EENINSALDIKVLTQPSQSA+RGGPGRSTMPTPGN
Sbjct: 263 LQVFYNLGTLKDTITSVVDGYCATLEENINSALDIKVLTQPSQSAVRGGPGRSTMPTPGN 322
Query: 901 TAVFRASLWDNMEKPVDHIFTVCGQVQHLQKI 996
TA RAS W NMEK +DHI+ VCGQVQHLQK+
Sbjct: 323 TAALRASFWTNMEKLMDHIYAVCGQVQHLQKV 354
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.316 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,985,307
Number of extensions: 785786
Number of successful extensions: 3314
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3291
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015088
(996 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 283 9e-74
>Sscrofa_Chr09
|| Length = 153670197
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 121 gaatgttatagtgattttttaaatgaagactttgatgtaaagacttacacttctcaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118020312 gaatgttatagtgattttttaaatgaagactttgatgtaaagacttacacttctcaatct 118020253
Query: 181 attcatcaagctgtaattgctgaacaactagcaaaacttgcccagggaatcagtcagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118020252 attcatcaagctgtaattgctgaacaactagcaaaacttgcccagggaatcagtcagctg 118020193
Query: 241 gataaagaactacacctacaggt 263
|||||||||||||||||||||||
Sbjct: 118020192 gataaagaactacacctacaggt 118020170
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 565 gattatctttctcaaggaatagatctttctggaatagaagtaatagaaaatgatctactt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117856678 gattatctttctcaaggaatagatctttctggaatagaagtaatagaaaatgatctactt 117856619
Query: 625 tttattgcaagagctcgactcgaagtggaaaatcaagctaagcgcctattggagcagggt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117856618 tttattgcaagagctcgactcgaagtggaaaatcaagctaagcgcctattggagcagggt 117856559
Query: 685 gtggaaactcag 696
||||||||||||
Sbjct: 117856558 gtggaaactcag 117856547
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 1 gttgacgccatcacctccgcacctgccaacatggaaggtgacggcggcgtagctggggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118028488 gttgacgccatcacctccgcacctgccaacatggaaggtgacggcggcgtagctggggct 118028429
Query: 61 ggttttaaggctctgggctctgcaacggctgctgcggcagtcagggagcttctgcaggac 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118028428 ggctttaaggctctgggctctgcaacggctgctgcggcagtcagggagcttctgcaggac 118028369
Query: 121 g 121
|
Sbjct: 118028368 g 118028368
Score = 210 bits (106), Expect = 1e-51
Identities = 115/118 (97%)
Strand = Plus / Minus
Query: 861 agggggtcctggacgatctacgatgccaacgccaggaaacactgcagtgtttcgtgcttc 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117910303 agggggtcctggacgatctacgatgccaacgccaggaaacactgcagtgtttcgtgcttc 117910244
Query: 921 cctctgggacaatatggagaaacctgtggatcatatttttactgtttgtggccaggta 978
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 117910243 cctctggaccaatatggagaaacttgtggatcatatttttactgtttgtggccaggta 117910186
Score = 204 bits (103), Expect = 7e-50
Identities = 117/124 (94%)
Strand = Plus / Minus
Query: 442 caggttgcctgtgatttgcttcggagaataattcgaatcttgtatctcagtaagagactc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117987469 caggttgcctgtgatttgcttcggagaataattcgaatcttgtatctcagtaagagactc 117987410
Query: 502 cacggacaactgcannnnnnnagtagagagataacaaaagctgctcagagtctcaatgaa 561
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 117987409 cacggacaactgcagggggggagtagagagataacaaaagctgctcagagtctcaatgaa 117987350
Query: 562 cttg 565
||||
Sbjct: 117987349 cttg 117987346
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 372 taggatgaaagcaaaaattgttgagccatacaataaaatagtagcccgtactgctcaact 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118008164 taggatgaaagcaaaaattgttgagccatacaataaaatagtagcccgtactgctcaact 118008105
Query: 432 agcaagacttcaggt 446
|||||||||||||||
Sbjct: 118008104 agcaagacttcaggt 118008090
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 259 caggtcgttgcaagacatgaagatttattggcacaagcaactgggattgagtctttagaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118010815 caggtcgttgcaagacatgaagatttattggcacaagcaactgggattgagtctttagaa 118010756
Query: 319 ggt 321
|||
Sbjct: 118010755 ggt 118010753
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 318 aggtgttcttcaaatgatgcagacaagaattggagctttacagggagctgttgatagg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118008317 aggtgttcttcaaatgatgcagacaagaattggagctttacagggagctgttgatagg 118008260
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,782,564
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 8
Length of query: 996
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 975
Effective length of database: 2,808,413,156
Effective search space: 2738202827100
Effective search space used: 2738202827100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)