Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029594.1| sperm flagellar protein 1 [Bos taurus]. 413 e-116
Alignment gi|NP_001011677.1| spermatogenesis-associated protein 4 [Bos ta... 62 9e-10
>ref|NP_001029594.1| sperm flagellar protein 1 [Bos taurus].
Length = 236
Score = 413 bits (1062), Expect = e-116
Identities = 213/237 (89%), Positives = 214/237 (90%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKM EMHNYVPAN
Sbjct: 1 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQ 515
SLQQKLSNW HLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIP KQ
Sbjct: 61 SLQQKLSNWSHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPLRQRLEERQRRRKQ 120
Query: 516 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 695
G GSLQELAPQDGTDYMDVGLSQKARGEG PDPQG GQLR GRLP PRP PG SQ LQ D
Sbjct: 121 GIGSLQELAPQDGTDYMDVGLSQKARGEGVPDPQGRGQLREGRLPVPRP-PGDSQALQSD 179
Query: 696 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 866
PSF+LQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR
Sbjct: 180 PSFILQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 236
>ref|NP_001011677.1| spermatogenesis-associated protein 4 [Bos taurus].
Length = 282
Score = 61.6 bits (148), Expect = 9e-10
Identities = 29/89 (32%), Positives = 52/89 (58%)
Frame = +3
Query: 201 WVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPANSLQQKLSNWGHLNRK 380
W+ ++ L+ RN+SRDFS+G L+AE+ Y+P ++ ++ SL+ KL NW L K
Sbjct: 58 WLQSLDLTFFPRNISRDFSNGFLIAEIFTTYYPWDLKLSSFKNGTSLKVKLDNWAQL-EK 116
Query: 381 VLNKLNFSVPEDVMRKIAQCAPGVVELVL 467
L + +P++++ C GV E+++
Sbjct: 117 FLARKKLKLPKELIHGTIHCKAGVPEILI 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,051,172
Number of extensions: 997009
Number of successful extensions: 5704
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5684
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,306,398
Effective search space: 2789747610
Effective search space used: 2789747610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542915.2| PREDICTED: similar to Protein C20orf28 homolog ... 417 e-117
Alignment gi|XP_851298.1| PREDICTED: similar to spermatogenesis associate... 55 9e-08
>ref|XP_542915.2| PREDICTED: similar to Protein C20orf28 homolog [Canis familiaris].
Length = 236
Score = 417 bits (1072), Expect = e-117
Identities = 214/237 (90%), Positives = 217/237 (91%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKM EMHNYVPAN
Sbjct: 1 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQ 515
SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIP KQ
Sbjct: 61 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPLRQRLEERQRRRKQ 120
Query: 516 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 695
GT SLQELAPQDGT YMDVGLS+KA GEGA DPQGGGQLR GRLPGPRP PGYSQ +QGD
Sbjct: 121 GTSSLQELAPQDGTGYMDVGLSRKAGGEGALDPQGGGQLREGRLPGPRP-PGYSQAVQGD 179
Query: 696 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 866
PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRI+DLSRRLQQAERKQR
Sbjct: 180 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIDDLSRRLQQAERKQR 236
>ref|XP_851298.1| PREDICTED: similar to spermatogenesis associated 4 [Canis
familiaris].
Length = 264
Score = 55.1 bits (131), Expect = 9e-08
Identities = 25/74 (33%), Positives = 44/74 (59%)
Frame = +3
Query: 246 RDFSDGVLVAEVIKFYFPKMAEMHNYVPANSLQQKLSNWGHLNRKVLNKLNFSVPEDVMR 425
RDFS+G L+AE+ Y+P+ ++ ++ SL+ KL NW L K L + F +P++++
Sbjct: 22 RDFSNGFLIAEIFTAYYPRELKLSSFENGTSLKVKLDNWAQL-EKFLARKKFKLPKELIH 80
Query: 426 KIAQCAPGVVELVL 467
C GV E+++
Sbjct: 81 GTIHCKAGVPEILV 94
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,535,582
Number of extensions: 1029724
Number of successful extensions: 6020
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5954
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 195
Effective length of database: 15,474,232
Effective search space: 3017475240
Effective search space used: 3017475240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182298.1| sperm flagellar protein 1 [Sus scrofa]. 443 e-125
Alignment gi|XP_003359974.1| PREDICTED: sperm flagellar protein 1-like [S... 154 6e-38
Alignment gi|NP_001171394.1| spermatogenesis-associated protein 4 [Sus sc... 64 1e-10
>ref|NP_001182298.1| sperm flagellar protein 1 [Sus scrofa].
Length = 237
Score = 443 bits (1139), Expect = e-125
Identities = 224/237 (94%), Positives = 224/237 (94%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKM EMHNYVPAN
Sbjct: 1 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQ 515
SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIP KQ
Sbjct: 61 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPLRQRLEERQRRRKQ 120
Query: 516 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 695
GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD
Sbjct: 121 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 180
Query: 696 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 866
PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR
Sbjct: 181 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 237
>ref|XP_003359974.1| PREDICTED: sperm flagellar protein 1-like [Sus scrofa].
Length = 74
Score = 154 bits (389), Expect = 6e-38
Identities = 73/74 (98%), Positives = 73/74 (98%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKM EMHNYVPAN
Sbjct: 1 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNR 377
SLQQKLSNWGHLNR
Sbjct: 61 SLQQKLSNWGHLNR 74
>ref|NP_001171394.1| spermatogenesis-associated protein 4 [Sus scrofa].
Length = 310
Score = 63.9 bits (154), Expect = 1e-10
Identities = 30/89 (33%), Positives = 52/89 (58%)
Frame = +3
Query: 201 WVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPANSLQQKLSNWGHLNRK 380
W+ + LS RN+SRDFS+G L+AE+ ++P ++ ++ SL+ KL NW L K
Sbjct: 58 WLQGLDLSFFPRNISRDFSNGFLIAEIFSIHYPWDLKLSSFQNGTSLKVKLDNWAQL-EK 116
Query: 381 VLNKLNFSVPEDVMRKIAQCAPGVVELVL 467
L + F +P++++ C GV E+++
Sbjct: 117 FLARKKFKLPKELIHGTIHCKAGVPEILI 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,003,526
Number of extensions: 645946
Number of successful extensions: 3775
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3756
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,904,026
Effective search space: 1771901174
Effective search space used: 1771901174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081917.1| sperm flagellar protein 1 [Mus musculus]. 374 e-104
Alignment gi|NP_001028637.1| hypothetical protein LOC381933 [Mus musculus]. 125 6e-29
Alignment gi|NP_598472.2| spermatogenesis-associated protein 4 [Mus muscu... 64 2e-10
>ref|NP_081917.1| sperm flagellar protein 1 [Mus musculus].
Length = 234
Score = 374 bits (961), Expect = e-104
Identities = 196/237 (82%), Positives = 204/237 (86%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
M SVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAE+IKFYFPKM EMHNYVPAN
Sbjct: 1 MESSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAELIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQ 515
SLQQKLSNWGHLNRKVLNKLNFSVP+DVMRKIAQC+PGVVELVLIP K
Sbjct: 61 SLQQKLSNWGHLNRKVLNKLNFSVPDDVMRKIAQCSPGVVELVLIPLRQRLEERQRRQKL 120
Query: 516 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 695
G GSLQELAPQD + YMD+GL QK RGEGA P G QLR GR RP PGY+Q LQGD
Sbjct: 121 GVGSLQELAPQDSSGYMDMGLPQKVRGEGA--PALGEQLREGRPLASRP-PGYNQALQGD 177
Query: 696 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 866
PSFVLQIAEKEQELLASQETVQVLQMKV+RLEHLLQLKNVRI+DLSRRLQQAERKQR
Sbjct: 178 PSFVLQIAEKEQELLASQETVQVLQMKVKRLEHLLQLKNVRIDDLSRRLQQAERKQR 234
>ref|NP_001028637.1| hypothetical protein LOC381933 [Mus musculus].
Length = 307
Score = 125 bits (313), Expect = 6e-29
Identities = 94/270 (34%), Positives = 132/270 (48%), Gaps = 52/270 (19%)
Frame = +3
Query: 183 LHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPANSLQQKLSNW 362
+H L W+D +PLSRPKR+L+RDFSDGVLVAE++K + P++ ++H+YVPA S QKLSNW
Sbjct: 19 IHNLCAWLDRLPLSRPKRHLARDFSDGVLVAEIVKHFRPRLVDLHSYVPACSTDQKLSNW 78
Query: 363 GHLNRKVLNKLNFSVPE-DVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQGTGS---- 527
LNRKV KL+ + + D+ R ++ + ++ GT
Sbjct: 79 SLLNRKVFRKLHLCISDNDIQRVVSNRPGVIESILCALREKMEARTVHVGSAGTADPRHS 138
Query: 528 -------LQELAPQDGTDYM---DVGLSQKAR------GEGAPDPQG--------GGQLR 635
++L P T M DV S + GE P+ Q +
Sbjct: 139 AVDAVRPWRDLTPNPHTSKMQDPDVDNSSLSEPLWDSGGEHHSVPESWVHDVELPNLQKK 198
Query: 636 TGRLPGPRPSPGYSQTLQ--------------GDP---------SFVLQIAEKEQELLAS 746
G L P P+P ++ LQ GD S Q+ +KEQ L
Sbjct: 199 AG-LQSP-PAPSSTKILQNQRDLEKMGCCACRGDSIEGLWDHLVSIQQQLEDKEQALAIL 256
Query: 747 QETVQVLQMKVRRLEHLLQLKNVRIEDLSR 836
QETV++LQ+KV RLEHL+QLK+ RI +L R
Sbjct: 257 QETVKILQLKVMRLEHLVQLKDQRIWELMR 286
>ref|NP_598472.2| spermatogenesis-associated protein 4 [Mus musculus].
Length = 295
Score = 63.5 bits (153), Expect = 2e-10
Identities = 31/89 (34%), Positives = 51/89 (57%)
Frame = +3
Query: 201 WVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPANSLQQKLSNWGHLNRK 380
W+ + LS RN++RDFS+G LVAE+ Y+P + ++ SL+ KL NW + K
Sbjct: 57 WLQGLDLSFFPRNVTRDFSNGYLVAEIFCIYYPWDLRLSSFENGTSLKVKLDNWAQI-EK 115
Query: 381 VLNKLNFSVPEDVMRKIAQCAPGVVELVL 467
L K F +P++++ C GV E+++
Sbjct: 116 FLAKKKFKLPKELIHGTIHCKAGVPEILI 144
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,306,221
Number of extensions: 825952
Number of successful extensions: 4545
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4528
Number of HSP's successfully gapped: 4
Length of query: 297
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 196
Effective length of database: 12,583,923
Effective search space: 2466448908
Effective search space used: 2466448908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056232.2| sperm flagellar protein 1 [Homo sapiens]. 401 e-112
Alignment gi|NP_653245.2| spermatogenesis-associated protein 4 [Homo sapi... 67 2e-11
>ref|NP_056232.2| sperm flagellar protein 1 [Homo sapiens].
Length = 236
Score = 401 bits (1031), Expect = e-112
Identities = 205/237 (86%), Positives = 211/237 (89%)
Frame = +3
Query: 156 MAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEMHNYVPAN 335
MA SVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKM EMHNYVPAN
Sbjct: 1 MASSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPAN 60
Query: 336 SLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVLIPXXXXXXXXXXXXKQ 515
SLQQKLSNWGHLNRKVL +LNFSVP+DVMRKIAQCAPGVVELVLIP KQ
Sbjct: 61 SLQQKLSNWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEERQRRRKQ 120
Query: 516 GTGSLQELAPQDGTDYMDVGLSQKARGEGAPDPQGGGQLRTGRLPGPRPSPGYSQTLQGD 695
G GSLQELAPQDG+ YMDVG+SQKARGEG PDPQGGGQL R P PRP P Y++ LQGD
Sbjct: 121 GAGSLQELAPQDGSGYMDVGVSQKARGEGVPDPQGGGQLSWDRPPAPRP-PAYNRALQGD 179
Query: 696 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 866
PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR
Sbjct: 180 PSFVLQIAEKEQELLASQETVQVLQMKVRRLEHLLQLKNVRIEDLSRRLQQAERKQR 236
>ref|NP_653245.2| spermatogenesis-associated protein 4 [Homo sapiens].
Length = 305
Score = 67.0 bits (162), Expect = 2e-11
Identities = 35/111 (31%), Positives = 59/111 (53%)
Frame = +3
Query: 135 LTFLRAPMAGSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMAEM 314
L + AP + + L W+ + LS RN++RDFS+G L+AE+ Y+P E+
Sbjct: 40 LVYPHAPKSSRLSRSVLR----WLQGLDLSFFPRNINRDFSNGFLIAEIFCIYYPWELEL 95
Query: 315 HNYVPANSLQQKLSNWGHLNRKVLNKLNFSVPEDVMRKIAQCAPGVVELVL 467
++ SL+ KL NW L K L + F +P++++ C GV E+++
Sbjct: 96 SSFENGTSLKVKLDNWAQL-EKFLARKKFKLPKELIHGTIHCKAGVPEILI 145
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,771,505
Number of extensions: 997840
Number of successful extensions: 5465
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5429
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,934,836
Effective search space: 2912293020
Effective search space used: 2912293020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015115
(892 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 523 e-146
>Sscrofa_Chr17
|| Length = 69701581
Score = 523 bits (264), Expect = e-146
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 caatatggccgctcccagctgggacgcgagtgtttgggttagagaggcagagtactcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36267029 caatatggccgctcccagctgggacgcgagtgtttgggttagagaggcagagtactcggg 36267088
Query: 61 cggcggcagtggcgagagaggaagcttttgagggattgtgaggttgaggctggacgctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36267089 cggcggcagtggcgagagaggaagcttttgagggattgtgaggttgaggctggacgctac 36267148
Query: 121 acagctggaacggcctgaccttcctgagggcgccaatggcaggcagcgtggacgaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36267149 acagctggaacggcctgaccttcctgagggcgccaatggcaggcagcgtggacgaggaag 36267208
Query: 181 cgctgcaccagctgtacctgtgggtagacaacatccctctgtcccggcccaaaagaaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36267209 cgctgcaccagctgtacctgtgggtagacaacatccctctgtcccggcccaaaagaaatc 36267268
Query: 241 tctctcgggacttcagtgacggag 264
||||||||||||||||||||||||
Sbjct: 36267269 tctctcgggacttcagtgacggag 36267292
Score = 319 bits (161), Expect = 1e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 374 caggaaggtgctgaacaaattgaacttctcggtaccagaggatgtgatgcgtaagatcgc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36268841 caggaaggtgctgaacaaattgaacttctcggtaccagaggatgtgatgcgtaagatcgc 36268900
Query: 434 ccagtgcgccccgggtgtggtggagctggtgctcattcctctgaggcagcgcctggagga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36268901 ccagtgcgccccgggtgtggtggagctggtgctcattcctctgaggcagcgcctggagga 36268960
Query: 494 gcggcagaggcgaaggaagcagggcacaggctccttacagg 534
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 36268961 gcggcagaggcgaaggaagcagggcacaggctccttacagg 36269001
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 632 caggacaggccggctgcctgggccccggccatcaccggggtatagccagacgcttcaagg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269607 caggacaggccggctgcctgggccccggccatcaccggggtatagccagacgcttcaagg 36269666
Query: 692 cgacccaagcttcgtcctccagatcgctgaaaaggagcaggagctgttggcttcacagga 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269667 cgacccaagcttcgtcctccagatcgctgaaaaggagcaggagctgttggcttcacagga 36269726
Query: 752 gactgtgcaggt 763
||||||||||||
Sbjct: 36269727 gactgtgcaggt 36269738
Score = 258 bits (130), Expect = 5e-66
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 759 caggtcctgcagatgaaggtgagacgcttggagcacttgctccagctcaagaacgtgcgc 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269833 caggtcctgcagatgaaggtgagacgcttggagcacttgctccagctcaagaacgtgcgc 36269892
Query: 819 atcgaagacctttccaggcggctccagcaggcggagcgtaagcagcggtgagccgaggtc 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269893 atcgaagacctttccaggcggctccagcaggcggagcgtaagcagcggtgagccgaggtc 36269952
Query: 879 ccgacctcctgggg 892
|||||||| |||||
Sbjct: 36269953 ccgacctcatgggg 36269966
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 263 agtcctggttgcagaggtcatcaagttttattttcccaagatggcggagatgcacaatta 322
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36268399 agtcctggttgcagaggtcatcaagttttattttcccaagatggtggagatgcacaatta 36268458
Query: 323 tgtccctgccaactctctccagcagaagctgagcaactggggtcacctgaacagg 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36268459 tgtccctgccaactctctccagcagaagctgagcaactggggtcacctgaacagg 36268513
Score = 125 bits (63), Expect = 4e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 573 ggtttgtcccagaaggcccgaggggaaggtgccccagacccccagggagggggacagctc 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269380 ggtttgtcccagaaggcccgaggggaaggtgccccagacccccagggagggggacagctc 36269439
Query: 633 agg 635
|||
Sbjct: 36269440 agg 36269442
Score = 89.7 bits (45), Expect = 2e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 531 caggaactggctccccaggatggcactgactacatggatgtgggt 575
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36269183 caggaactggctccccaggatggcactgactacatggatgtgggt 36269227
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,396,183
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 7
Length of query: 892
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 871
Effective length of database: 2,808,413,156
Effective search space: 2446127858876
Effective search space used: 2446127858876
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)