Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040042.1| protein lin-7 homolog B [Bos taurus]. 335 3e-92
Alignment gi|NP_001068899.1| protein lin-7 homolog C [Bos taurus]. 296 2e-80
Alignment gi|NP_001073070.1| protein lin-7 homolog A [Bos taurus]. 280 1e-75
Alignment gi|XP_002699096.1| PREDICTED: chapsyn-110-like [Bos taurus]. 87 2e-17
Alignment gi|XP_581662.3| PREDICTED: discs, large homolog 2 (Drosophila) ... 87 2e-17
Alignment gi|NP_001179165.1| disks large homolog 3 [Bos taurus]. 84 2e-16
Alignment gi|XP_002700072.1| PREDICTED: discs, large homolog 3 (Drosophil... 84 2e-16
Alignment gi|NP_001178236.1| disks large homolog 4 [Bos taurus]. 80 4e-15
Alignment gi|XP_002695828.1| PREDICTED: disks large homolog 4-like [Bos t... 80 4e-15
Alignment gi|XP_002684901.1| PREDICTED: discs, large homolog 1 (Drosophil... 77 2e-14
>ref|NP_001040042.1| protein lin-7 homolog B [Bos taurus].
Length = 201
Score = 335 bits (860), Expect = 3e-92
Identities = 173/189 (91%), Positives = 175/189 (92%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
+VSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAE+R
Sbjct: 13 EVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG
Sbjct: 73 ATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR
Sbjct: 133 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 192
Query: 826 RRQQHQSYS 852
RRQQHQSYS
Sbjct: 193 RRQQHQSYS 201
>ref|NP_001068899.1| protein lin-7 homolog C [Bos taurus].
Length = 197
Score = 296 bits (758), Expect = 2e-80
Identities = 146/184 (79%), Positives = 163/184 (88%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
D+ RA+ELLE+LQRSGE+PPQKLQALQRVLQS FC+A+REVYE +Y+T+DI+ S EVR
Sbjct: 13 DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRAN 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKT+EGLGFNIMGGKEQNSPIYISR+IPGG+ADRHG
Sbjct: 73 ATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQG VKLVVRYTP+VLEEME+RFEKMRSA+
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEKMRSAK 192
Query: 826 RRQQ 837
RRQQ
Sbjct: 193 RRQQ 196
>ref|NP_001073070.1| protein lin-7 homolog A [Bos taurus].
Length = 233
Score = 280 bits (716), Expect = 1e-75
Identities = 140/197 (71%), Positives = 162/197 (82%)
Frame = +1
Query: 253 LCVCAPRPRPADVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTL 432
L V P DV+RA+ELLE+LQ SGE+P KLQ+L++VLQS FC+AIREVY+ +++T+
Sbjct: 17 LTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIREVYQYMHETI 76
Query: 433 DITGSAEVRXXXXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISR 612
+ G E R SEGH+HPRVVELPKTDEGLGFN+MGGKEQNSPIYISR
Sbjct: 77 TVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISR 136
Query: 613 VIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
+IPGGVA+RHGGLKRGDQLLSVNGVSVEGE HEKAVELLKAA+ SVKLVVRYTP+VLEEM
Sbjct: 137 IIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEM 196
Query: 793 EARFEKMRSARRRQQHQ 843
EARFEK+R+ARRRQQ Q
Sbjct: 197 EARFEKLRTARRRQQQQ 213
>ref|XP_002699096.1| PREDICTED: chapsyn-110-like [Bos taurus].
Length = 687
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 488 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 546
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 547 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 595
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 168 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 227
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 228 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 258
Score = 59.3 bits (142), Expect = 5e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 263 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 322
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 323 EEVTHEEAVAILKNTSDVVYLKV 345
>ref|XP_581662.3| PREDICTED: discs, large homolog 2 (Drosophila) isoform 1, partial
[Bos taurus].
Length = 767
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 316 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 374
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 375 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 423
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +1
Query: 547 DEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 711
+ GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V H
Sbjct: 2 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 61
Query: 712 KAVELLKAAQGSVKLVVRYTPRVLE 786
KAVE LK A V+L VR +LE
Sbjct: 62 KAVEALKEAGSIVRLYVRRRRPILE 86
Score = 59.3 bits (142), Expect = 5e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 91 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 150
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 151 EEVTHEEAVAILKNTSDVVYLKV 173
>ref|NP_001179165.1| disks large homolog 3 [Bos taurus].
Length = 817
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 384 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 442
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 443 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 491
Score = 58.9 bits (141), Expect = 6e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 227 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 287 QDVRHEEAVASLKNTSDMVYLKV 309
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 123 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 182
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 183 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 215
>ref|XP_002700072.1| PREDICTED: discs, large homolog 3 (Drosophila) [Bos taurus].
Length = 817
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 384 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 442
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 443 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 491
Score = 58.9 bits (141), Expect = 6e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 227 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 287 QDVRHEEAVASLKNTSDMVYLKV 309
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 123 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 182
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 183 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 215
>ref|NP_001178236.1| disks large homolog 4 [Bos taurus].
Length = 721
Score = 79.7 bits (195), Expect = 4e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Score = 62.0 bits (149), Expect = 8e-10
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
+EG + L + + GLGF+I GG + + I+I+++IPGG A + G L+ D
Sbjct: 54 TEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 113
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
+L VN V V H AVE LK A V+L V+R P + ME + K
Sbjct: 114 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKLMEIKLIK 162
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 218 EDVMHEDAVAALKNTYDVVYLKV 240
>ref|XP_002695828.1| PREDICTED: disks large homolog 4-like [Bos taurus].
Length = 721
Score = 79.7 bits (195), Expect = 4e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Score = 62.0 bits (149), Expect = 8e-10
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
+EG + L + + GLGF+I GG + + I+I+++IPGG A + G L+ D
Sbjct: 54 TEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 113
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
+L VN V V H AVE LK A V+L V+R P + ME + K
Sbjct: 114 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKLMEIKLIK 162
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 218 EDVMHEDAVAALKNTYDVVYLKV 240
>ref|XP_002684901.1| PREDICTED: discs, large homolog 1 (Drosophila) [Bos taurus].
Length = 914
Score = 77.4 bits (189), Expect = 2e-14
Identities = 45/112 (40%), Positives = 63/112 (56%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L + GLGFNI+GG E I+IS ++ GG AD G L++GD+++SVN V +
Sbjct: 454 PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRT 512
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQSYSS 855
HE+A LK A +V +V +Y P EA K+ R + + S SS
Sbjct: 513 ASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEA---KIHDLREQMMNSSISS 561
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + +S I+I+++I GG A + G L+ D +L VN + V
Sbjct: 225 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEIDV 284
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
H KAVE LK A V+L V+ V E++
Sbjct: 285 RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,908,504
Number of extensions: 881298
Number of successful extensions: 6615
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 6444
Number of HSP's successfully gapped: 193
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-015117
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851922.1| PREDICTED: similar to lin-7 homolog B isoform 2... 348 6e-96
Alignment gi|XP_533623.2| PREDICTED: similar to lin-7 homolog B isoform 1... 337 1e-92
Alignment gi|XP_542543.2| PREDICTED: similar to lin-7 homolog C [Canis fa... 296 2e-80
Alignment gi|XP_532635.2| PREDICTED: similar to lin-7 homolog A [Canis fa... 278 6e-75
Alignment gi|XP_542276.2| PREDICTED: similar to Channel associated protei... 87 2e-17
Alignment gi|XP_549062.2| PREDICTED: similar to synapse-associated protei... 84 3e-16
Alignment gi|XP_856788.1| PREDICTED: similar to synapse-associated protei... 84 3e-16
Alignment gi|XP_856747.1| PREDICTED: similar to synapse-associated protei... 84 3e-16
Alignment gi|XP_546580.2| PREDICTED: similar to postsynaptic density prot... 80 4e-15
Alignment gi|XP_545159.2| PREDICTED: similar to synapse-associated protei... 77 2e-14
>ref|XP_851922.1| PREDICTED: similar to lin-7 homolog B isoform 2 [Canis familiaris].
Length = 207
Score = 348 bits (892), Expect = 6e-96
Identities = 180/195 (92%), Positives = 181/195 (92%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAE+R
Sbjct: 13 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG
Sbjct: 73 ATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR
Sbjct: 133 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 192
Query: 826 RRQQHQSYSSLESRG 870
RRQQHQSYSSLESRG
Sbjct: 193 RRQQHQSYSSLESRG 207
>ref|XP_533623.2| PREDICTED: similar to lin-7 homolog B isoform 1 [Canis familiaris].
Length = 225
Score = 337 bits (863), Expect = 1e-92
Identities = 180/213 (84%), Positives = 181/213 (84%), Gaps = 18/213 (8%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREV------------------Y 411
DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREV Y
Sbjct: 13 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVRAGGGAGGSLMLLRLHQVY 72
Query: 412 EQLYDTLDITGSAEVRXXXXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQN 591
EQLYDTLDITGSAE+R SEGHAHPRVVELPKTDEGLGFNIMGGKEQN
Sbjct: 73 EQLYDTLDITGSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQN 132
Query: 592 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYT 771
SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYT
Sbjct: 133 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYT 192
Query: 772 PRVLEEMEARFEKMRSARRRQQHQSYSSLESRG 870
PRVLEEMEARFEKMRSARRRQQHQSYSSLESRG
Sbjct: 193 PRVLEEMEARFEKMRSARRRQQHQSYSSLESRG 225
>ref|XP_542543.2| PREDICTED: similar to lin-7 homolog C [Canis familiaris].
Length = 197
Score = 296 bits (758), Expect = 2e-80
Identities = 146/184 (79%), Positives = 163/184 (88%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
D+ RA+ELLE+LQRSGE+PPQKLQALQRVLQS FC+A+REVYE +Y+T+DI+ S EVR
Sbjct: 13 DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRAN 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKT+EGLGFNIMGGKEQNSPIYISR+IPGG+ADRHG
Sbjct: 73 ATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQG VKLVVRYTP+VLEEME+RFEKMRSA+
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEKMRSAK 192
Query: 826 RRQQ 837
RRQQ
Sbjct: 193 RRQQ 196
>ref|XP_532635.2| PREDICTED: similar to lin-7 homolog A [Canis familiaris].
Length = 219
Score = 278 bits (711), Expect = 6e-75
Identities = 137/186 (73%), Positives = 159/186 (85%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
DV+RA+ELLE+LQ SGE+P KLQ+L++VLQS FC+AIREVY+ +++T+ + G E R
Sbjct: 14 DVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIREVYQYMHETITVNGCPEFRAR 73
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVA+RHG
Sbjct: 74 ATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVAERHG 133
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAA+ SVKLVVRYTP+VLEEMEARFEK+R+AR
Sbjct: 134 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEARFEKLRTAR 193
Query: 826 RRQQHQ 843
RRQQ Q
Sbjct: 194 RRQQQQ 199
>ref|XP_542276.2| PREDICTED: similar to Channel associated protein of synapse-110
(Chapsyn-110) (Discs, large homolog 2) [Canis
familiaris].
Length = 901
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 450 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 508
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 509 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 557
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +1
Query: 547 DEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 711
+ GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V H
Sbjct: 136 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 195
Query: 712 KAVELLKAAQGSVKLVVRYTPRVLE 786
KAVE LK A V+L VR +LE
Sbjct: 196 KAVEALKEAGSIVRLYVRRRRPILE 220
Score = 59.3 bits (142), Expect = 5e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 225 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 284
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 285 EEVTHEEAVAILKNTSDVVYLKV 307
>ref|XP_549062.2| PREDICTED: similar to synapse-associated protein 102 isoform 1
[Canis familiaris].
Length = 849
Score = 83.6 bits (205), Expect = 3e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 402 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 460
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 461 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 509
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 245 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 305 QDVRHEEAVASLKNTSDMVYLKV 327
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 141 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 200
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 201 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 233
>ref|XP_856788.1| PREDICTED: similar to synapse-associated protein 102 isoform 5
[Canis familiaris].
Length = 849
Score = 83.6 bits (205), Expect = 3e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 402 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 460
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 461 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 509
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 245 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 305 QDVRHEEAVASLKNTSDMVYLKV 327
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 141 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 200
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 201 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 233
>ref|XP_856747.1| PREDICTED: similar to synapse-associated protein 102 isoform 4
[Canis familiaris].
Length = 510
Score = 83.6 bits (205), Expect = 3e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 45 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 103
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 104 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 152
>ref|XP_546580.2| PREDICTED: similar to postsynaptic density protein 95 [Canis
familiaris].
Length = 760
Score = 79.7 bits (195), Expect = 4e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 353 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRS 411
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 412 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 450
Score = 62.0 bits (149), Expect = 8e-10
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
+EG + L + + GLGF+I GG + + I+I+++IPGG A + G L+ D
Sbjct: 99 TEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 158
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
+L VN V V H AVE LK A V+L V+R P + ME + K
Sbjct: 159 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKLMEIKLIK 207
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 203 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 262
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 263 EDVMHEDAVAALKNTYDVVYLKV 285
>ref|XP_545159.2| PREDICTED: similar to synapse-associated protein 97 [Canis
familiaris].
Length = 927
Score = 77.4 bits (189), Expect = 2e-14
Identities = 45/112 (40%), Positives = 63/112 (56%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L + GLGFNI+GG E I+IS ++ GG AD G L++GD+++SVN V +
Sbjct: 464 PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRT 522
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQSYSS 855
HE+A LK A +V +V +Y P EA K+ R + + S SS
Sbjct: 523 ASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEA---KIHDLREQMMNSSISS 571
Score = 60.5 bits (145), Expect = 2e-09
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + +S I+I+++I GG A + G L+ D +L VN V V
Sbjct: 225 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEVDV 284
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
H KAVE LK A V+L V+ V E++
Sbjct: 285 RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 317
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL+VN V +
Sbjct: 320 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 379
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV LK V L V
Sbjct: 380 EEVTHEEAVTALKNTSDFVYLKV 402
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,345,130
Number of extensions: 896897
Number of successful extensions: 6846
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 6670
Number of HSP's successfully gapped: 175
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127347.2| PREDICTED: protein lin-7 homolog B-like [Sus... 348 3e-96
Alignment gi|XP_003122952.1| PREDICTED: protein lin-7 homolog C-like [Sus... 296 1e-80
Alignment gi|XP_003126793.2| PREDICTED: protein lin-7 homolog A-like [Sus... 228 4e-60
Alignment gi|XP_003354995.1| PREDICTED: disks large homolog 4, partial [S... 80 2e-15
Alignment gi|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa]. 78 6e-15
Alignment gi|XP_003358811.1| PREDICTED: disks large homolog 1 [Sus scrofa]. 77 1e-14
Alignment gi|XP_003360899.1| PREDICTED: inaD-like protein-like, partial [... 76 3e-14
Alignment gi|XP_003121290.1| PREDICTED: golgi-associated PDZ and coiled-c... 74 1e-13
Alignment gi|XP_003121289.1| PREDICTED: golgi-associated PDZ and coiled-c... 74 1e-13
Alignment gi|XP_003353569.1| PREDICTED: LOW QUALITY PROTEIN: multiple PDZ... 72 4e-13
>ref|XP_003127347.2| PREDICTED: protein lin-7 homolog B-like [Sus scrofa].
Length = 207
Score = 348 bits (893), Expect = 3e-96
Identities = 181/195 (92%), Positives = 181/195 (92%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVR
Sbjct: 13 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRAH 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG
Sbjct: 73 ATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR
Sbjct: 133 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 192
Query: 826 RRQQHQSYSSLESRG 870
RRQQHQSYSSLESRG
Sbjct: 193 RRQQHQSYSSLESRG 207
>ref|XP_003122952.1| PREDICTED: protein lin-7 homolog C-like [Sus scrofa].
Length = 197
Score = 296 bits (758), Expect = 1e-80
Identities = 146/184 (79%), Positives = 163/184 (88%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
D+ RA+ELLE+LQRSGE+PPQKLQALQRVLQS FC+A+REVYE +Y+T+DI+ S EVR
Sbjct: 13 DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRAN 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKT+EGLGFNIMGGKEQNSPIYISR+IPGG+ADRHG
Sbjct: 73 ATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQG VKLVVRYTP+VLEEME+RFEKMRSA+
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEKMRSAK 192
Query: 826 RRQQ 837
RRQQ
Sbjct: 193 RRQQ 196
>ref|XP_003126793.2| PREDICTED: protein lin-7 homolog A-like [Sus scrofa].
Length = 186
Score = 228 bits (581), Expect = 4e-60
Identities = 116/169 (68%), Positives = 132/169 (78%)
Frame = +1
Query: 337 LPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXXXXXXXXXXXXXXSEGHA 516
+PP Q L V R C + VY+ +++T+ + G E R SEGH+
Sbjct: 1 MPPDIAQGLPEVGVGRACPS---VYQYMHETITVNGCPEFRARATAKATVAAFAASEGHS 57
Query: 517 HPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 696
HPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVA+RHGGLKRGDQLLSVNGVSVE
Sbjct: 58 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVE 117
Query: 697 GEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQ 843
GE HEKAVELLKAA+ SVKLVVRYTP+VLEEMEARFEK+R+ARRRQQ Q
Sbjct: 118 GEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEARFEKLRTARRRQQQQ 166
>ref|XP_003354995.1| PREDICTED: disks large homolog 4, partial [Sus scrofa].
Length = 654
Score = 79.7 bits (195), Expect = 2e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 241 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 299
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 300 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 338
Score = 58.2 bits (139), Expect = 7e-09
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 91 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 150
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 151 EDVMHEDAVAALKNTYDVVYLKV 173
Score = 57.8 bits (138), Expect = 9e-09
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = +1
Query: 547 DEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 711
+ GLGF+I GG + + I+I+++IPGG A + G L+ D +L VN V V H
Sbjct: 2 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 61
Query: 712 KAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
AVE LK A V+L V+R P + ME + K
Sbjct: 62 AAVEALKEAGSIVRLYVMRRKPPAEKLMEIKLIK 95
>ref|XP_003135199.2| PREDICTED: disks large homolog 3 [Sus scrofa].
Length = 992
Score = 78.2 bits (191), Expect = 6e-15
Identities = 41/85 (48%), Positives = 55/85 (64%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 384 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 442
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTP 774
HE+A LK A SV +V +Y P
Sbjct: 443 ATHEQAAAALKRAGQSVTIVAQYRP 467
Score = 58.9 bits (141), Expect = 4e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 227 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 287 QDVRHEEAVASLKNTSDMVYLKV 309
Score = 57.4 bits (137), Expect = 1e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 123 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 182
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 183 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 215
>ref|XP_003358811.1| PREDICTED: disks large homolog 1 [Sus scrofa].
Length = 747
Score = 77.0 bits (188), Expect = 1e-14
Identities = 45/112 (40%), Positives = 63/112 (56%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L + GLGFNI+GG E I+IS ++ GG AD G L++GD+++SVN V +
Sbjct: 363 PRKVILHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRT 421
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSARRRQQHQSYSS 855
HE+A LK A +V +V +Y P EA K+ R + + S SS
Sbjct: 422 ASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEA---KIHDLREQMMNSSISS 470
Score = 60.5 bits (145), Expect = 1e-09
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + +S I+I+++I GG A + G L+ D +L VN V V
Sbjct: 124 ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIIAGGAAAQDGRLRVNDCILRVNEVDV 183
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
H KAVE LK A V+L V+ V E++
Sbjct: 184 RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 216
Score = 58.9 bits (141), Expect = 4e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL+VN V +
Sbjct: 219 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 278
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV LK V L V
Sbjct: 279 EEVTHEEAVTALKNTSDFVYLKV 301
>ref|XP_003360899.1| PREDICTED: inaD-like protein-like, partial [Sus scrofa].
Length = 403
Score = 75.9 bits (185), Expect = 3e-14
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGG---KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 690
P+++ L K EGLGF+I+GG + PIY+ + G A G LKRGDQ+L+VNG +
Sbjct: 318 PKIITLEKGSEGLGFSIVGGYGSPHGDLPIYVKTIFAKGAAADDGRLKRGDQILAVNGET 377
Query: 691 VEGEQHEKAVELLKAAQGSVKLVV 762
+EG HE+AV +LK +G+V L V
Sbjct: 378 LEGVTHEQAVAILKHQRGTVVLTV 401
Score = 61.2 bits (147), Expect = 8e-10
Identities = 32/74 (43%), Positives = 44/74 (59%)
Frame = +1
Query: 541 KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 720
K GLG +I+G K S ++IS ++ GG AD G L +GDQ+LSVNG + E
Sbjct: 80 KAGRGLGLSIVG-KRNGSGVFISDIVKGGAADLDGRLIQGDQILSVNGEDMRSASQETVA 138
Query: 721 ELLKAAQGSVKLVV 762
+LK AQG V+L +
Sbjct: 139 TILKCAQGLVQLEI 152
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +1
Query: 550 EGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 720
+ LG +I GGK + PI+I+ + GVA R L+ GD+++S+NG ++G H V
Sbjct: 175 DALGISIAGGKGSPLGDIPIFIAMIQASGVAARTQKLQVGDRIVSINGQPLDGLSHADVV 234
Query: 721 ELLKAAQGSVKL 756
LLK A G + L
Sbjct: 235 NLLKNAYGRIIL 246
>ref|XP_003121290.1| PREDICTED: golgi-associated PDZ and coiled-coil motif-containing
protein isoform 2 [Sus scrofa].
Length = 463
Score = 73.9 bits (180), Expect = 1e-13
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSV 678
S+G R V L K D EGLG +I GGKE PI IS + PG ADR GGL GD +L+V
Sbjct: 281 SQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 340
Query: 679 NGVSVEGEQHEKAVELLKAAQGSVKLVVRY 768
NGV++ +H++AV +L +G ++ V Y
Sbjct: 341 NGVNLRDTKHKEAVTILSQQRGEIEFEVVY 370
>ref|XP_003121289.1| PREDICTED: golgi-associated PDZ and coiled-coil motif-containing
protein isoform 1 [Sus scrofa].
Length = 455
Score = 73.9 bits (180), Expect = 1e-13
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSV 678
S+G R V L K D EGLG +I GGKE PI IS + PG ADR GGL GD +L+V
Sbjct: 273 SQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 332
Query: 679 NGVSVEGEQHEKAVELLKAAQGSVKLVVRY 768
NGV++ +H++AV +L +G ++ V Y
Sbjct: 333 NGVNLRDTKHKEAVTILSQQRGEIEFEVVY 362
>ref|XP_003353569.1| PREDICTED: LOW QUALITY PROTEIN: multiple PDZ domain protein-like [Sus
scrofa].
Length = 2034
Score = 72.4 bits (176), Expect = 4e-13
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG---KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
+ L + +GLGF+I+GG + PIY+ V G A G LKRGDQ+++VNG S+EG
Sbjct: 1952 ITLDRGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 2011
Query: 700 EQHEKAVELLKAAQGSVKLVV 762
HE+AV +LK +G+V L+V
Sbjct: 2012 VTHEEAVAILKRTKGTVTLMV 2032
Score = 62.0 bits (149), Expect = 5e-10
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 517 HPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 696
H +EL GLGF I+GGK + + ++PGGVAD+HG L GD +L + +
Sbjct: 275 HVETIELVNDGSGLGFGIVGGKATG--VIVKTILPGGVADQHGRLCSGDHILKIGDTDLA 332
Query: 697 GEQHEKAVELLKAAQGSVKLVV 762
G E+ ++L+ VKL++
Sbjct: 333 GMSSEQVAQVLRQCGNRVKLMI 354
Score = 58.9 bits (141), Expect = 4e-09
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE 696
+EL K +GLGF+I+ ++ P I I ++PGGVA++ G L GD+L+ VN V++E
Sbjct: 724 IELEKGSQGLGFSILDYQDPVDPASTVIVIRSLVPGGVAEKDGRLLPGDRLMFVNDVNLE 783
Query: 697 GEQHEKAVELLKAA-QGSVKLVV 762
E+AV+ LK A G+V++ V
Sbjct: 784 NSSLEEAVQALKGAPSGTVRIGV 806
Score = 57.4 bits (137), Expect = 1e-08
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +1
Query: 541 KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 720
K +GLG +I+G K ++ +++S ++ GG+AD G L +GDQ+L VNG V E
Sbjct: 1724 KPGKGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRHATQEAVA 1782
Query: 721 ELLKAAQGSV 750
LLK ++GS+
Sbjct: 1783 ALLKMSEGSL 1792
Score = 55.5 bits (132), Expect = 4e-08
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +1
Query: 523 RVVELPK-TDEGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS 690
R VE+ K + LG +I GG + PI+I+ + P GVA + L+ GD+++++ G S
Sbjct: 1825 RTVEIKKGPSDSLGISIAGGVGSPLGDVPIFIAMMHPNGVAAQTQKLRVGDRIVTICGTS 1884
Query: 691 VEGEQHEKAVELLKAAQGSVKLVV 762
EG H +AV LLK A GS+++ V
Sbjct: 1885 TEGMTHTQAVNLLKNAPGSIEMQV 1908
Score = 55.1 bits (131), Expect = 6e-08
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 526 VVELPKTDEGLGFNIMGGKEQNS-PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE 702
++EL K GLG ++ G K+++ ++I + P G A + G L+ D+LL +NG + G
Sbjct: 1343 MIELEKGRSGLGLSLAGNKDRSRMSVFIVGIDPNGAAGKDGRLQIADELLEINGQILYGR 1402
Query: 703 QHEKAVELLKAAQGSVKLV 759
H+ A ++K A VK++
Sbjct: 1403 SHQNASSIIKCAPSKVKII 1421
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQN-SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 705
+E+ K GLG +I+GG + I I V G A + G L GDQ+L VNG+ +
Sbjct: 1623 IEISKGRTGLGLSIVGGADTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 1682
Query: 706 HEKAVELLKAAQGSVKLVV 762
H++A+ +L+ V+L++
Sbjct: 1683 HDEAINVLRQTPQRVRLML 1701
Score = 48.9 bits (115), Expect = 4e-06
Identities = 31/79 (39%), Positives = 42/79 (53%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQH 708
+ELPK GLG I N + I + G A + G LK GDQ+L+V+ V G
Sbjct: 1477 LELPKDQGGLGIAISEEDTLNG-VVIKSLTEHGAAAKDGRLKVGDQILAVDDEVVAGYPV 1535
Query: 709 EKAVELLKAAQGSVKLVVR 765
EK + LLK + +VKL +R
Sbjct: 1536 EKFISLLKTVKTTVKLTIR 1554
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,445,100
Number of extensions: 588497
Number of successful extensions: 4329
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 4208
Number of HSP's successfully gapped: 113
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035828.1| protein lin-7 homolog B [Mus musculus]. 343 1e-94
Alignment gi|NP_035829.1| protein lin-7 homolog C [Mus musculus]. 296 2e-80
Alignment gi|NP_001034443.1| protein lin-7 homolog A isoform 1 [Mus muscu... 280 1e-75
Alignment gi|NP_001028395.1| protein lin-7 homolog A isoform 2 [Mus muscu... 166 3e-41
Alignment gi|NP_001229975.1| disks large homolog 2 isoform 2 [Mus musculu... 87 2e-17
Alignment gi|NP_035937.2| disks large homolog 2 isoform 1 [Mus musculus]. 87 2e-17
Alignment gi|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculu... 84 2e-16
Alignment gi|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculu... 84 2e-16
Alignment gi|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus]. 84 2e-16
Alignment gi|NP_001103222.1| disks large homolog 4 isoform 2 [Mus musculu... 80 3e-15
>ref|NP_035828.1| protein lin-7 homolog B [Mus musculus].
Length = 207
Score = 343 bits (880), Expect = 1e-94
Identities = 178/195 (91%), Positives = 179/195 (91%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVR
Sbjct: 13 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRAH 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG
Sbjct: 73 ATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 192
Query: 826 RRQQHQSYSSLESRG 870
RRQQH SY+SLESRG
Sbjct: 193 RRQQHHSYTSLESRG 207
>ref|NP_035829.1| protein lin-7 homolog C [Mus musculus].
Length = 197
Score = 296 bits (758), Expect = 2e-80
Identities = 146/184 (79%), Positives = 163/184 (88%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
D+ RA+ELLE+LQRSGE+PPQKLQALQRVLQS FC+A+REVYE +Y+T+DI+ S EVR
Sbjct: 13 DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRAN 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKT+EGLGFNIMGGKEQNSPIYISR+IPGG+ADRHG
Sbjct: 73 ATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQG VKLVVRYTP+VLEEME+RFEKMRSA+
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEKMRSAK 192
Query: 826 RRQQ 837
RRQQ
Sbjct: 193 RRQQ 196
>ref|NP_001034443.1| protein lin-7 homolog A isoform 1 [Mus musculus].
Length = 233
Score = 280 bits (716), Expect = 1e-75
Identities = 140/197 (71%), Positives = 162/197 (82%)
Frame = +1
Query: 253 LCVCAPRPRPADVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTL 432
L V P DV+RA+ELLE+LQ SGE+P KLQ+L++VLQS FC+AIREVY+ +++T+
Sbjct: 17 LTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIREVYQYMHETI 76
Query: 433 DITGSAEVRXXXXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISR 612
+ G E R SEGH+HPRVVELPKTDEGLGFN+MGGKEQNSPIYISR
Sbjct: 77 TVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISR 136
Query: 613 VIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
+IPGGVA+RHGGLKRGDQLLSVNGVSVEGE HEKAVELLKAA+ SVKLVVRYTP+VLEEM
Sbjct: 137 IIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEM 196
Query: 793 EARFEKMRSARRRQQHQ 843
EARFEK+R+ARRRQQ Q
Sbjct: 197 EARFEKLRTARRRQQQQ 213
>ref|NP_001028395.1| protein lin-7 homolog A isoform 2 [Mus musculus].
Length = 111
Score = 166 bits (419), Expect = 3e-41
Identities = 82/91 (90%), Positives = 88/91 (96%)
Frame = +1
Query: 571 MGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV 750
MGGKEQNSPIYISR+IPGGVA+RHGGLKRGDQLLSVNGVSVEGE HEKAVELLKAA+ SV
Sbjct: 1 MGGKEQNSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSV 60
Query: 751 KLVVRYTPRVLEEMEARFEKMRSARRRQQHQ 843
KLVVRYTP+VLEEMEARFEK+R+ARRRQQ Q
Sbjct: 61 KLVVRYTPKVLEEMEARFEKLRTARRRQQQQ 91
>ref|NP_001229975.1| disks large homolog 2 isoform 2 [Mus musculus].
Length = 481
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 16 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 74
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 75 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 123
>ref|NP_035937.2| disks large homolog 2 isoform 1 [Mus musculus].
Length = 852
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 419 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 477
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 478 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 526
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 99 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 158
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 159 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 189
Score = 59.3 bits (142), Expect = 4e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 194 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 253
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 254 EEVTHEEAVAILKNTSDVVYLKV 276
>ref|NP_001171250.1| disks large homolog 3 isoform 3 [Mus musculus].
Length = 512
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 47 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 105
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 106 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 154
>ref|NP_001171249.1| disks large homolog 3 isoform 2 [Mus musculus].
Length = 835
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 402 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 460
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 461 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 509
Score = 58.9 bits (141), Expect = 6e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 245 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 305 QDVRHEEAVASLKNTSDMVYLKV 327
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 141 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 200
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 201 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 233
>ref|NP_058027.1| disks large homolog 3 isoform 1 [Mus musculus].
Length = 849
Score = 83.6 bits (205), Expect = 2e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 402 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 460
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 461 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 509
Score = 58.9 bits (141), Expect = 6e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 245 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 304
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 305 QDVRHEEAVASLKNTSDMVYLKV 327
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 141 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 200
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 201 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 233
>ref|NP_001103222.1| disks large homolog 4 isoform 2 [Mus musculus].
Length = 721
Score = 79.7 bits (195), Expect = 3e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
+EG + L + + GLGF+I GG + + I+I+++IPGG A + G L+ D
Sbjct: 54 TEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 113
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
+L VN V V H AVE LK A V+L V+R P + +E + K
Sbjct: 114 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKIIEIKLIK 162
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 158 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 217
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 218 EDVMHEDAVAALKNTYDVVYLKV 240
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,949,444
Number of extensions: 705715
Number of successful extensions: 5137
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 4990
Number of HSP's successfully gapped: 212
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071448.1| protein lin-7 homolog B [Homo sapiens]. 348 6e-96
Alignment gi|NP_060832.1| protein lin-7 homolog C [Homo sapiens]. 296 2e-80
Alignment gi|NP_004655.1| protein lin-7 homolog A [Homo sapiens]. 280 1e-75
Alignment gi|NP_001136172.1| disks large homolog 2 isoform 3 [Homo sapien... 87 2e-17
Alignment gi|NP_001136171.1| disks large homolog 2 isoform 1 [Homo sapien... 87 2e-17
Alignment gi|NP_001355.2| disks large homolog 2 isoform 2 [Homo sapiens]. 87 2e-17
Alignment gi|NP_001193698.1| disks large homolog 2 isoform 5 [Homo sapien... 87 2e-17
Alignment gi|NP_065781.1| disks large homolog 3 isoform b [Homo sapiens]. 84 3e-16
Alignment gi|NP_066943.2| disks large homolog 3 isoform a [Homo sapiens]. 84 3e-16
Alignment gi|NP_001356.1| disks large homolog 4 isoform 1 [Homo sapiens]. 80 4e-15
>ref|NP_071448.1| protein lin-7 homolog B [Homo sapiens].
Length = 207
Score = 348 bits (892), Expect = 6e-96
Identities = 180/195 (92%), Positives = 181/195 (92%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAE+R
Sbjct: 13 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIRAH 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG
Sbjct: 73 ATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR
Sbjct: 133 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 192
Query: 826 RRQQHQSYSSLESRG 870
RRQQHQSYSSLESRG
Sbjct: 193 RRQQHQSYSSLESRG 207
>ref|NP_060832.1| protein lin-7 homolog C [Homo sapiens].
Length = 197
Score = 296 bits (758), Expect = 2e-80
Identities = 146/184 (79%), Positives = 163/184 (88%)
Frame = +1
Query: 286 DVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEVRXX 465
D+ RA+ELLE+LQRSGE+PPQKLQALQRVLQS FC+A+REVYE +Y+T+DI+ S EVR
Sbjct: 13 DICRAIELLEKLQRSGEVPPQKLQALQRVLQSEFCNAVREVYEHVYETVDISSSPEVRAN 72
Query: 466 XXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHG 645
SEGH+HPRVVELPKT+EGLGFNIMGGKEQNSPIYISR+IPGG+ADRHG
Sbjct: 73 ATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRHG 132
Query: 646 GLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMRSAR 825
GLKRGDQLLSVNGVSVEGE HEKAVELLKAAQG VKLVVRYTP+VLEEME+RFEKMRSA+
Sbjct: 133 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRFEKMRSAK 192
Query: 826 RRQQ 837
RRQQ
Sbjct: 193 RRQQ 196
>ref|NP_004655.1| protein lin-7 homolog A [Homo sapiens].
Length = 233
Score = 280 bits (716), Expect = 1e-75
Identities = 140/197 (71%), Positives = 162/197 (82%)
Frame = +1
Query: 253 LCVCAPRPRPADVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTL 432
L V P DV+RA+ELLE+LQ SGE+P KLQ+L++VLQS FC+AIREVY+ +++T+
Sbjct: 17 LTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIREVYQYMHETI 76
Query: 433 DITGSAEVRXXXXXXXXXXXXXXSEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISR 612
+ G E R SEGH+HPRVVELPKTDEGLGFN+MGGKEQNSPIYISR
Sbjct: 77 TVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISR 136
Query: 613 VIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEM 792
+IPGGVA+RHGGLKRGDQLLSVNGVSVEGE HEKAVELLKAA+ SVKLVVRYTP+VLEEM
Sbjct: 137 IIPGGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEM 196
Query: 793 EARFEKMRSARRRQQHQ 843
EARFEK+R+ARRRQQ Q
Sbjct: 197 EARFEKLRTARRRQQQQ 213
>ref|NP_001136172.1| disks large homolog 2 isoform 3 [Homo sapiens].
Length = 749
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 316 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 374
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 375 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 423
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 48 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 107
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 108 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 138
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 143 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 202
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 203 EEVTHEEAVAILKNTSEVVYLKV 225
>ref|NP_001136171.1| disks large homolog 2 isoform 1 [Homo sapiens].
Length = 975
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 524 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 582
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 583 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 631
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 204 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 263
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 264 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 294
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 299 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 358
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 359 EEVTHEEAVAILKNTSEVVYLKV 381
>ref|NP_001355.2| disks large homolog 2 isoform 2 [Homo sapiens].
Length = 870
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 419 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 477
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 478 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 526
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 99 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 158
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 159 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 189
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 194 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 253
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 254 EEVTHEEAVAILKNTSEVVYLKV 276
>ref|NP_001193698.1| disks large homolog 2 isoform 5 [Homo sapiens].
Length = 909
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR V L K GLGFNI+GG E I++S ++ GG AD G L+RGDQ+LSVNG+ + G
Sbjct: 458 PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 516
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A +V ++ +Y P E ARFE K+ R + + S SS
Sbjct: 517 ASHEQAAAALKGAGQTVTIIAQYQP----EDYARFEAKIHDLREQMMNHSMSS 565
Score = 62.8 bits (151), Expect = 5e-10
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
+ L + + GLGF+I GG + + I+I+++IPGG A G L+ D +L VN V V
Sbjct: 138 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 197
Query: 694 EGEQHEKAVELLKAAQGSVKLVVRYTPRVLE 786
H KAVE LK A V+L VR +LE
Sbjct: 198 SEVSHSKAVEALKEAGSIVRLYVRRRRPILE 228
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD+LL VN S+
Sbjct: 233 IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 292
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE+AV +LK V L V
Sbjct: 293 EEVTHEEAVAILKNTSEVVYLKV 315
>ref|NP_065781.1| disks large homolog 3 isoform b [Homo sapiens].
Length = 512
Score = 83.6 bits (205), Expect = 3e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 47 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 105
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 106 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 154
>ref|NP_066943.2| disks large homolog 3 isoform a [Homo sapiens].
Length = 817
Score = 83.6 bits (205), Expect = 3e-16
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + L K GLGFNI+GG E I++S ++ GG AD G L+RGD++LSVNGV++
Sbjct: 384 PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 442
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFE-KMRSARRRQQHQSYSS 855
HE+A LK A SV +V +Y P E +RFE K+ R + + S SS
Sbjct: 443 ATHEQAAAALKRAGQSVTIVAQYRP----EEYSRFESKIHDLREQMMNSSMSS 491
Score = 58.9 bits (141), Expect = 7e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGG-KEQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
V L K +GLGF+I GG Q+ P IYI+++I GG A + G L+ GD+LL+VN ++
Sbjct: 227 VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 286
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
+ +HE+AV LK V L V
Sbjct: 287 QDVRHEEAVASLKNTSDMVYLKV 309
Score = 57.4 bits (137), Expect = 2e-08
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
S+G + L + + GLGF+I GG + + I+I+++IPGG A G L D
Sbjct: 123 SDGMFKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDC 182
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVR 765
+L VN V V H +AVE LK A V+LVVR
Sbjct: 183 VLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVR 215
>ref|NP_001356.1| disks large homolog 4 isoform 1 [Homo sapiens].
Length = 767
Score = 79.7 bits (195), Expect = 4e-15
Identities = 41/99 (41%), Positives = 59/99 (59%)
Frame = +1
Query: 520 PRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 699
PR + + + GLGFNI+GG E I+IS ++ GG AD G L++GDQ+LSVNGV +
Sbjct: 354 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 412
Query: 700 EQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEARFEKMR 816
HE+A LK A +V ++ +Y P EA+ +R
Sbjct: 413 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 451
Score = 62.4 bits (150), Expect = 6e-10
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Frame = +1
Query: 502 SEGHAHPRVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQ 666
+EG + L + + GLGF+I GG + + I+I+++IPGG A + G L+ D
Sbjct: 100 TEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 159
Query: 667 LLSVNGVSVEGEQHEKAVELLKAAQGSVKL-VVRYTPRVLEEMEARFEK 810
+L VN V V H AVE LK A V+L V+R P + ME + K
Sbjct: 160 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 208
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Frame = +1
Query: 529 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 693
++L K +GLGF+I GG Q+ P IY++++I GG A + G L+ GD++L+VN V +
Sbjct: 204 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 263
Query: 694 EGEQHEKAVELLKAAQGSVKLVV 762
E HE AV LK V L V
Sbjct: 264 EDVMHEDAVAALKNTYDVVYLKV 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,415,221
Number of extensions: 864154
Number of successful extensions: 6462
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 6259
Number of HSP's successfully gapped: 201
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015117
(973 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 696 0.0
Sscrofa_Chr05 109 3e-21
>Sscrofa_Chr06
|| Length = 157765593
Score = 696 bits (351), Expect = 0.0
Identities = 389/408 (95%)
Strand = Plus / Minus
Query: 1 gtcaggctgtcgatgggcgtgggagggtcggcgggcccgctggacggcgagggggagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018681 gtcaggctgtcgatgggcgtgggagggtcggcgggcccgctggacggcgagggggagccc 50018622
Query: 61 gccgcccacctccggccgtgtgtgcctggggatcctggggacgcagggtgactggtggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018621 gccgcccacctccggccgtgtgtgcctggggatcctggggacgcagggtgactggtggca 50018562
Query: 121 gtctctccactgccgccggcagctctgcggctgtccgactgggacttggctgtcttgccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018561 gtctctccactgccgccggcagctctgcggctgtccgactgggacttggctgtcttgccc 50018502
Query: 181 cgggtctgcgctcgcccttcctcggtctccggccgcatatctccgggcttcgctgcgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018501 cgggtctgcgctcgcccttcctcggtctccggccgcatatctccgggcttcgctgcgtct 50018442
Query: 241 tccagtctctgactctgtgtctgtgnnnnnnnnnnnnnnnnnnnagacgtgtcccgggcg 300
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 50018441 tccagtctctgactctgtgtctgtgcgccccgcccccgccccgcagacgtgtcccgggcg 50018382
Query: 301 gtggagctcctcgagcggctccagcgcagcggggagctgcccccgcagaagctgcaggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018381 gtggagctcctcgagcggctccagcgcagcggggagctgcccccgcagaagctgcaggcc 50018322
Query: 361 ctccagcgagtcctgcagagccgcttctgctctgccatccgggaggtg 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50018321 ctccagcgagtcctgcagagccgcttctgctctgccatccgggaggtg 50018274
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 476 aggccacggtggctgccttcacggccagtgagggccacgcacatccccgggtagtcgaac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50017338 aggccacggtggctgccttcacggccagtgagggccacgcacatccccgggtagtcgaac 50017279
Query: 536 tgcccaagacggacgagggcttaggcttcaacatcatggggggcaaggagcagaattcgc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50017278 tgcccaagacggacgagggcttaggcttcaacatcatggggggcaaggagcagaattcgc 50017219
Query: 596 ccatctacatctcccgggtcatccccggcggcgtggctgaccgccacggaggcctcaagc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50017218 ccatctacatctcccgggtcatccccggcggcgtggctgaccgccacggaggcctcaagc 50017159
Query: 656 gtggggaccagctgctgtcagtgaatggtgtg 687
||||||||||||||||||||||||||||||||
Sbjct: 50017158 gtggggaccagctgctgtcagtgaatggtgtg 50017127
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 687 gagcgtggagggtgagcagcacgagaaggcagtggagctgctgaaggccgcccagggctc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50015934 gagcgtggagggtgagcagcacgagaaggcagtggagctgctgaaggccgcccagggctc 50015875
Query: 747 tgtgaagctggtggtgcgttacacccctcgggtactggaggagatggaggctcgctttga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50015874 tgtgaagctggtggtgcgttacacccctcgggtactggaggagatggaggctcgctttga 50015815
Query: 807 gaagatgcgctctgcccgccggcgccagcaacatcagagctactcgt 853
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50015814 gaagatgcgctctgcccgccggcgccagcaacatcagagctactcgt 50015768
Score = 194 bits (98), Expect = 6e-47
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 852 gtccttggagtctcgaggctgaaaccacagatctggaccctcaccccctcccctgtacag 911
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 50015411 gtccttggagtctcgaggctgaaaccacagatctggaccttcaccccctcccctgtacag 50015352
Query: 912 tatttatgtcaccagctccttatttaaagatctttgaccctc 953
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50015351 tatttatgtcaccagctccttatttaaagatctttgaccctc 50015310
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 404 aggtgtatgagcagctctatgacacgctggacatcaccggcagtgctgaggtccgggccc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50017996 aggtgtatgagcagctctatgacacgctggacatcaccggcagtgctgaggtccgggccc 50017937
Query: 464 acgccacggccaagg 478
|||||||||||||||
Sbjct: 50017936 acgccacggccaagg 50017922
>Sscrofa_Chr05
|| Length = 111506441
Score = 109 bits (55), Expect = 3e-21
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 502 agtgagggccacgcacatccccgggtagtcgaactgcccaagacggacgagggcttaggc 561
||||| |||||| | || || ||||| |||||||||||||||||||| || ||| | ||
Sbjct: 105568049 agtgaaggccactcccaccctcgggtggtcgaactgcccaagacggatgaaggccttggt 105568108
Query: 562 ttcaacatcatggggggcaaggagcagaattcgcccatctacatctcccgggtcatcccc 621
|| ||| | ||||| || |||||||| ||||| ||||| || ||||| || |||| |||
Sbjct: 105568109 tttaacgtgatgggaggaaaggagcaaaattcccccatttatatctctcgcatcattccc 105568168
Query: 622 ggcggcgtggctgaccgccacggaggcctcaagcgtggggaccagctgctgtcagtgaa 680
|| || |||||||| | ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 105568169 ggaggggtggctgaaagacacggaggcctcaagcgaggagaccagctgctgtcagtgaa 105568227
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,704,599
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 7
Length of query: 973
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 952
Effective length of database: 2,808,413,156
Effective search space: 2673609324512
Effective search space used: 2673609324512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)