Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867983.1| PREDICTED: similar to G patch domain containing... 592 e-169
Alignment gi|XP_853864.1| PREDICTED: similar to G patch domain containing... 592 e-169
>ref|XP_867983.1| PREDICTED: similar to G patch domain containing 1 isoform 3 [Canis
familiaris].
Length = 932
Score = 592 bits (1527), Expect = e-169
Identities = 293/345 (84%), Positives = 303/345 (87%)
Frame = +1
Query: 13 MAALDSDSDEDLVTYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHXXXXXXXXXX 192
MAA DSDSDEDLV+YGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFH
Sbjct: 1 MAAPDSDSDEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAG 60
Query: 193 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 372
YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT
Sbjct: 61 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 120
Query: 373 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGXXXXXXXX 552
KDRIREKARQLAAATAPIPGATLLDDLITPAKLS+GFELLRKMGWKEGQGIG
Sbjct: 121 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSIGFELLRKMGWKEGQGIGPRVKRRPR 180
Query: 553 XXXXXXGVKIYGCALPPGGXXXXXXXXXXYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 732
GVKIYGCALPPGG Y+PENVTFAPKDVTPVDFTPKDNVHGLAYKG
Sbjct: 181 RQKPDPGVKIYGCALPPGGSEGSEEEDDDYVPENVTFAPKDVTPVDFTPKDNVHGLAYKG 240
Query: 733 LDPHQALFGTSGEHFNLFSGGPEGTSNLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 912
LDPHQALFGTSGEHFNLF GG +GTSNLLG+IGVNKGRKLGISGQAFGVGALEEEDDDIY
Sbjct: 241 LDPHQALFGTSGEHFNLFGGGSQGTSNLLGEIGVNKGRKLGISGQAFGVGALEEEDDDIY 300
Query: 913 ATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLAK 1047
ATETLSKYDT+L+DEEPGDGLYGWTAP+ YK+QKESEKD + K
Sbjct: 301 ATETLSKYDTILKDEEPGDGLYGWTAPRQYKNQKESEKDLRYIGK 345
>ref|XP_853864.1| PREDICTED: similar to G patch domain containing 1 isoform 2 [Canis
familiaris].
Length = 932
Score = 592 bits (1527), Expect = e-169
Identities = 293/345 (84%), Positives = 303/345 (87%)
Frame = +1
Query: 13 MAALDSDSDEDLVTYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHXXXXXXXXXX 192
MAA DSDSDEDLV+YGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFH
Sbjct: 1 MAAPDSDSDEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAG 60
Query: 193 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 372
YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT
Sbjct: 61 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 120
Query: 373 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGXXXXXXXX 552
KDRIREKARQLAAATAPIPGATLLDDLITPAKLS+GFELLRKMGWKEGQGIG
Sbjct: 121 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSIGFELLRKMGWKEGQGIGPRVKRRPR 180
Query: 553 XXXXXXGVKIYGCALPPGGXXXXXXXXXXYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 732
GVKIYGCALPPGG Y+PENVTFAPKDVTPVDFTPKDNVHGLAYKG
Sbjct: 181 RQKPDPGVKIYGCALPPGGSEGSEEEDDDYVPENVTFAPKDVTPVDFTPKDNVHGLAYKG 240
Query: 733 LDPHQALFGTSGEHFNLFSGGPEGTSNLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 912
LDPHQALFGTSGEHFNLF GG +GTSNLLG+IGVNKGRKLGISGQAFGVGALEEEDDDIY
Sbjct: 241 LDPHQALFGTSGEHFNLFGGGSQGTSNLLGEIGVNKGRKLGISGQAFGVGALEEEDDDIY 300
Query: 913 ATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLAK 1047
ATETLSKYDT+L+DEEPGDGLYGWTAP+ YK+QKESEKD + K
Sbjct: 301 ATETLSKYDTILKDEEPGDGLYGWTAPRQYKNQKESEKDLRYIGK 345
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.313 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,394,811
Number of extensions: 1029264
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2988
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-015154
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069246.1| G patch domain-containing protein 1 [Bos tau... 598 e-171
>ref|NP_001069246.1| G patch domain-containing protein 1 [Bos taurus].
Length = 931
Score = 598 bits (1541), Expect = e-171
Identities = 298/345 (86%), Positives = 304/345 (88%)
Frame = +1
Query: 13 MAALDSDSDEDLVTYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHXXXXXXXXXX 192
MAALDSDSDEDLV+YGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFH
Sbjct: 1 MAALDSDSDEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAG 60
Query: 193 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 372
YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPK+IVTTDDFASKT
Sbjct: 61 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKSIVTTDDFASKT 120
Query: 373 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGXXXXXXXX 552
KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIG
Sbjct: 121 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGPRVKRRPR 180
Query: 553 XXXXXXGVKIYGCALPPGGXXXXXXXXXXYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 732
GVKIYGCALPPGG YLPENVTFAPKDVTPVDFTPKDNVHGLAYKG
Sbjct: 181 RQKPDPGVKIYGCALPPGGSEGSEDEDDDYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 240
Query: 733 LDPHQALFGTSGEHFNLFSGGPEGTSNLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 912
LDPHQALFGTSGEHFNLFSGGPE T +LLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY
Sbjct: 241 LDPHQALFGTSGEHFNLFSGGPEETGDLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 300
Query: 913 ATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLAK 1047
ATETLSKYDTVL+DEEPGDGLYGWTAP+ YKSQKESEKD + K
Sbjct: 301 ATETLSKYDTVLKDEEPGDGLYGWTAPRQYKSQKESEKDLCYVGK 345
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.313 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,596,556
Number of extensions: 989698
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2986
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127067.2| PREDICTED: G patch domain-containing protein... 111 6e-25
>ref|XP_003127067.2| PREDICTED: G patch domain-containing protein 1-like, partial [Sus
scrofa].
Length = 668
Score = 111 bits (278), Expect = 6e-25
Identities = 52/61 (85%), Positives = 56/61 (91%)
Frame = +1
Query: 865 QAFGVGALEEEDDDIYATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLA 1044
+AFGVGALEEEDDDIYATETLSKYDTVL+DEEPGDGLYGWTAP+ YKSQKESEKD +
Sbjct: 21 EAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPKEYKSQKESEKDLRYVG 80
Query: 1045 K 1047
K
Sbjct: 81 K 81
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.313 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,845,108
Number of extensions: 634397
Number of successful extensions: 1875
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1875
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080457.1| G patch domain-containing protein 1 [Mus muscul... 572 e-163
>ref|NP_080457.1| G patch domain-containing protein 1 [Mus musculus].
Length = 930
Score = 572 bits (1475), Expect = e-163
Identities = 282/350 (80%), Positives = 297/350 (84%)
Frame = +1
Query: 13 MAALDSDSDEDLVTYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHXXXXXXXXXX 192
MAALDSDSDEDL++YGTGLEPL+EGERPKKPIPLQDQTVRDEKGRYKRFH
Sbjct: 1 MAALDSDSDEDLISYGTGLEPLDEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAG 60
Query: 193 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 372
YFNTVGSKEGWTPS+FVSSRQNRADKS LGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT
Sbjct: 61 YFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 120
Query: 373 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGXXXXXXXX 552
KDRIREKARQLAAA APIPGATLLDDLITPAKLSVGFELLRKMGWKEGQG+G
Sbjct: 121 KDRIREKARQLAAAAAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRKAR 180
Query: 553 XXXXXXGVKIYGCALPPGGXXXXXXXXXXYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 732
GVKIYGCALPPGG YLP+NVTFAPKDV PVDFTPKDNVHGLAYKG
Sbjct: 181 RQKPDPGVKIYGCALPPGGSEESEDEDDDYLPDNVTFAPKDVMPVDFTPKDNVHGLAYKG 240
Query: 733 LDPHQALFGTSGEHFNLFSGGPEGTSNLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 912
LDPHQALFG GEH NLF G EGTS+LLGD+G++KGRKLGISGQAFGVGALEEEDDDIY
Sbjct: 241 LDPHQALFGMPGEHLNLFGGASEGTSHLLGDVGLSKGRKLGISGQAFGVGALEEEDDDIY 300
Query: 913 ATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLAKFWMDF 1062
ATETLSKYDTVL+DEEPGDGLYGWTAP+ YK+QKE E+D + K F
Sbjct: 301 ATETLSKYDTVLKDEEPGDGLYGWTAPKQYKNQKEPERDLRYVGKILEGF 350
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.313 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,639,085
Number of extensions: 851318
Number of successful extensions: 2333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2332
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060495.2| G patch domain-containing protein 1 [Homo sapie... 575 e-164
>ref|NP_060495.2| G patch domain-containing protein 1 [Homo sapiens].
Length = 931
Score = 575 bits (1481), Expect = e-164
Identities = 287/345 (83%), Positives = 299/345 (86%)
Frame = +1
Query: 13 MAALDSDSDEDLVTYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHXXXXXXXXXX 192
MAA DSDS+EDLV+YGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFH
Sbjct: 1 MAARDSDSEEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKGRYKRFHGAFSGGFSAG 60
Query: 193 YFNTVGSKEGWTPSSFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 372
YFNTVGSKEGWTPS+FVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT
Sbjct: 61 YFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPKAIVTTDDFASKT 120
Query: 373 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGIGXXXXXXXX 552
KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQG+G
Sbjct: 121 KDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELLRKMGWKEGQGVGPRVKRRPR 180
Query: 553 XXXXXXGVKIYGCALPPGGXXXXXXXXXXYLPENVTFAPKDVTPVDFTPKDNVHGLAYKG 732
GVKIYGCALPPG YLP+NVTFAPKDVTPVDFTPKDNVHGLAYKG
Sbjct: 181 RQKPDPGVKIYGCALPPGSSEGSEGEDDDYLPDNVTFAPKDVTPVDFTPKDNVHGLAYKG 240
Query: 733 LDPHQALFGTSGEHFNLFSGGPEGTSNLLGDIGVNKGRKLGISGQAFGVGALEEEDDDIY 912
LDPHQALFGTSGEHFNLFSGG E + LG+IG+NKGRKLGISGQAFGVGALEEEDDDIY
Sbjct: 241 LDPHQALFGTSGEHFNLFSGGSERAGD-LGEIGLNKGRKLGISGQAFGVGALEEEDDDIY 299
Query: 913 ATETLSKYDTVLEDEEPGDGLYGWTAPQGYKSQKESEKDFAMLAK 1047
ATETLSKYDTVL+DEEPGDGLYGWTAP+ YK+QKESEKD + K
Sbjct: 300 ATETLSKYDTVLKDEEPGDGLYGWTAPRQYKNQKESEKDLRYVGK 344
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.313 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,609,039
Number of extensions: 1008883
Number of successful extensions: 2815
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2811
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015154
(1064 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 480 e-133
gb|GL894746.2| Sus scrofa unplaced genomic scaffold ChrUScaf2630 170 1e-39
>Sscrofa_Chr06
|| Length = 157765593
Score = 480 bits (242), Expect = e-133
Identities = 245/246 (99%)
Strand = Plus / Plus
Query: 623 aggatgaagatgatgactacttgccggaaaatgtgacctttgcacccaaagatgtcacac 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38464499 aggatgaagatgatgactacttgccggaaaatgtgacctttgcacccaaagatgtcacac 38464558
Query: 683 ctgtggatttcacacctaaagataatgtacacggactggcttacaagggcctggatcccc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38464559 ctgtggatttcacacctaaagataatgtacacggactggcttacaagggcctggatcccc 38464618
Query: 743 accaagcactgtttggaacttcaggagaacattttaatcttttcagcggaggacccgagg 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38464619 accaagcactgtttggaacttcaggagaacattttaatcttttcagcggaggacccgagg 38464678
Query: 803 ggaccagcaatcttcttggggatattggagtgaataaaggaaggaaattgggaatttcag 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 38464679 ggaccagcaatcttcttggggatattggagtgaataaaggaaggaaattgggaatttcgg 38464738
Query: 863 gccagg 868
||||||
Sbjct: 38464739 gccagg 38464744
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 305 aggatcttagtgaatttgggatagcacctaaagcgattgtcaccacagacgattttgctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38460954 aggatcttagtgaatttgggatagcacctaaagcgattgtcaccacagacgattttgctt 38461013
Query: 365 ctaaaaccaaagatagaatccgagaaaaagccagacagttagcagctgctactgccccaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38461014 ctaaaaccaaagatagaatccgagaaaaagccagacagttagcagctgctactgccccaa 38461073
Query: 425 ttcctggagccactctgcttgatgacctcataacacctgcaaa 467
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38461074 ttcctggagccactctgcttgatgacctcataacacctgcaaa 38461116
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 84 aggtgaaagaccaaagaagccaattcctcttcaggatcagaccgtcagggatgaaaaagg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38456785 aggtgaaagaccaaagaagccaattcctcttcaggatcagaccgtcagggatgaaaaagg 38456844
Query: 144 aaggtataaacgatttcatggagcctttagtggaggtttctctgctggttacttcaacac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38456845 aaggtataaacgatttcatggagcctttagtggaggtttctctgctggttacttcaacac 38456904
Query: 204 tgttggctcaaaagaagg 221
||||||||||||||||||
Sbjct: 38456905 tgttggctcaaaagaagg 38456922
Score = 274 bits (138), Expect = 9e-71
Identities = 147/150 (98%)
Strand = Plus / Plus
Query: 866 aggcttttggtgtaggtgccctggaagaggaagacgatgacatctatgccacagaaactc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38489921 aggcttttggtgtaggtgccctggaagaggaagacgatgacatctatgccacagaaactc 38489980
Query: 926 tgtccaagtatgataccgttttggaggacgaggaacctggagatgggctctatggctgga 985
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 38489981 tgtccaagtatgataccgttttgaaggacgaggaacctggagatgggctctatggctgga 38490040
Query: 986 cagcaccccaaggatataaaagtcagaaag 1015
|||||||| ||| |||||||||||||||||
Sbjct: 38490041 cagcacccaaagaatataaaagtcagaaag 38490070
Score = 266 bits (134), Expect = 2e-68
Identities = 146/150 (97%)
Strand = Plus / Plus
Query: 866 aggcttttggtgtaggtgccctggaagaggaagacgatgacatctatgccacagaaactc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38466137 aggcttttggtgtaggtgccctggaagaggaagacgatgacatctatgccacagaaactc 38466196
Query: 926 tgtccaagtatgataccgttttggaggacgaggaacctggagatgggctctatggctgga 985
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 38466197 tgtccaagtatgataccgttttgaaggacgaggagcctggagatgggctctatggctgga 38466256
Query: 986 cagcaccccaaggatataaaagtcagaaag 1015
|||||||| ||| |||||||||||||||||
Sbjct: 38466257 cagcacccaaagaatataaaagtcagaaag 38466286
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 468 attatctgttggttttgaattgctaagaaaaatgggttggaaggaaggacaaggaattgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38462512 attatctgttggttttgaattgctaagaaaaatgggttggaaggaaggacaaggaattgg 38462571
Query: 528 acctcgagtaaagaggagaccacgccgacaaaagcctg 565
||||||||||||||||||||||||||||||||||||||
Sbjct: 38462572 acctcgagtaaagaggagaccacgccgacaaaagcctg 38462609
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 218 aaggatggacaccgtcttccttcgtgtcttcgcgacagaacagagcagacaaatctgttc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38458042 aaggatggacaccgtcttccttcgtgtcttcgcgacagaacagagcagacaaatctgttc 38458101
Query: 278 ttggtcctgaagattttatggatgaagagg 307
||||||||||||||||||||||||||||||
Sbjct: 38458102 ttggtcctgaagattttatggatgaagagg 38458131
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gaagagagcaggatggcggcgctggacagtgacagcgacgaggacttggtcacctatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38449044 gaagagagcaggatggcggcgctggacagtgacagcgacgaggacttggtcacctatggg 38449103
Query: 61 acgggcctggagccgctggaagaaggt 87
|||||||||||||||||||||||||||
Sbjct: 38449104 acgggcctggagccgctggaagaaggt 38449130
Score = 85.7 bits (43), Expect = 5e-14
Identities = 50/51 (98%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 1014 agaatcagagaaagac-ttcgctatgttggcaaaattttggatggattttc 1063
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 38469843 agaatcagagaaagaccttcgctatgttggcaaaattttggatggattttc 38469893
Score = 85.7 bits (43), Expect = 5e-14
Identities = 50/51 (98%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 1014 agaatcagagaaagac-ttcgctatgttggcaaaattttggatggattttc 1063
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 38493616 agaatcagagaaagaccttcgctatgttggcaaaattttggatggattttc 38493666
>gb|GL894746.2| Sus scrofa unplaced genomic scaffold ChrUScaf2630
Length = 1900
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 218 aaggatggacaccgtcttccttcgtgtcttcgcgacagaacagagcagacaaatctgttc 277
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1789 aaggatggacaccgtcttcctttgtgtcttcgcgacagaacagagcagacaaatctgttc 1730
Query: 278 ttggtcctgaagattttatggatgaagagg 307
||||||||||||||||||||||||||||||
Sbjct: 1729 ttggtcctgaagattttatggatgaagagg 1700
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 565 gatcctggagtaaaaatctatggctgcgcattaccccctggaggctccgaagactctgag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gatcctggagtaaaaatctatggctgcgcattaccccctggaggctccgaagactctgag 465
Query: 625 g 625
|
Sbjct: 464 g 464
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,778,093
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 12
Length of query: 1064
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1043
Effective length of database: 2,808,413,156
Effective search space: 2929174921708
Effective search space used: 2929174921708
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)