Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853020.1| PREDICTED: similar to Nucleoside diphosphate ki... 119 4e-27
Alignment gi|XP_851794.1| PREDICTED: similar to NM23-H8 [Canis familiaris]. 115 9e-26
Alignment gi|XP_533843.2| PREDICTED: similar to nucleoside diphosphate ki... 95 1e-19
Alignment gi|XP_534114.2| PREDICTED: similar to Nucleoside diphosphate ki... 88 1e-17
Alignment gi|XP_542805.2| PREDICTED: similar to Thioredoxin domain contai... 85 1e-16
Alignment gi|XP_852718.1| PREDICTED: similar to expressed in non-metastat... 78 2e-14
Alignment gi|NP_001019808.1| nucleoside diphosphate kinase A [Canis lupus... 75 1e-13
Alignment gi|NP_001019809.1| nucleoside diphosphate kinase B [Canis lupus... 74 3e-13
Alignment gi|XP_854796.1| PREDICTED: similar to expressed in non-metastat... 72 9e-13
Alignment gi|XP_533973.2| PREDICTED: similar to expressed in non-metastat... 71 2e-12
>ref|XP_853020.1| PREDICTED: similar to Nucleoside diphosphate kinase homolog 5
(NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
(Testis-specific nm23 homolog) (Inhibitor of p53-induced
apoptosis-beta) (IPIA-beta) [Canis familiaris].
Length = 211
Score = 119 bits (299), Expect = 4e-27
Identities = 55/132 (41%), Positives = 88/132 (66%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLA+IKPD K EI +II ++GFT+ + + + LS + ++F+++ + F L
Sbjct: 13 EKTLAIIKPDIADKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYVEQYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R AI WK+LLGP N+ +A+ P S+RA++GTD +RNA HG +
Sbjct: 73 YMSSGPLVAMILARHKAISYWKELLGPTNTLVAKETHPDSLRAIYGTDDLRNALHGSNDF 132
Query: 716 SCAAREMELFFP 751
+ A RE++ FP
Sbjct: 133 AAAEREIQFMFP 144
>ref|XP_851794.1| PREDICTED: similar to NM23-H8 [Canis familiaris].
Length = 589
Score = 115 bits (287), Expect = 9e-26
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 2/245 (0%)
Frame = +2
Query: 350 KKEKTLALIKPDAVSKAGE-IIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
K EKTLA ++P + E +++II GF + + + LS +EA ++++ +
Sbjct: 310 KLEKTLAFLRPRLFQEKREHVLKIIEDEGFKILMQRQIILSEEEAQTLCREYENEDYFEN 369
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIR-NAAHG 703
+I+ +TSGP +A+ +LRD + WK L+GP++ A+ P S+ F + + N +G
Sbjct: 370 VIEQMTSGPSLALVLLRDCGLQHWKNLIGPSSVEKAKEHLPESLCVRFAMEDLPINQLYG 429
Query: 704 PDSLSCAAREMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGF 883
DSL A +E++ FFPS T ++KPH E +IL IR+ GF
Sbjct: 430 SDSLEEAEKEIQYFFPSQ--------------DTLALIKPHVTHE-QREEILKLIRETGF 474
Query: 884 EISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCG 1063
EI+ M+ ++ E+ Y KG Y +++ + GP + M + + N +R G
Sbjct: 475 EITQMKEVVLNEEAAEKIYSKIKG-RDFYQDVLQMLSEGPSLVMVLTKWNAVSDWRRLMG 533
Query: 1064 PADPE 1078
P DP+
Sbjct: 534 PIDPD 538
Score = 85.1 bits (209), Expect = 1e-16
Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 5/200 (2%)
Frame = +2
Query: 173 GDGSVEMHDVKNHRTFLKRTKYEDLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSK 352
G SVE + R EDL + L+ + + +++ Q
Sbjct: 398 GPSSVEKAKEHLPESLCVRFAMEDLPINQLYGSDSLEEAEKEI------------QYFFP 445
Query: 353 KEKTLALIKPDAV-SKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
+ TLALIKP + EI+++I + GF +T++K + L+ + A + + R F ++
Sbjct: 446 SQDTLALIKPHVTHEQREEILKLIRETGFEITQMKEVVLNEEAAEKIYSKIKGRDFYQDV 505
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP- 706
+Q ++ GP + M + + +A+ +W++L+GP + A+ +P SIRA FG ++NA HG
Sbjct: 506 LQMLSEGPSLVMVLTKWNAVSDWRRLMGPIDPDEAKLLSPDSIRAHFGRSTLKNAVHGSS 565
Query: 707 ---DSLSCAAREMELFFPSS 757
+++ +R E F P +
Sbjct: 566 TIYEAMETISRMFEDFIPEN 585
>ref|XP_533843.2| PREDICTED: similar to nucleoside diphosphate kinase type 6 [Canis
familiaris].
Length = 316
Score = 95.1 bits (235), Expect = 1e-19
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + ++K + ++E F+ +H+ R F L
Sbjct: 144 TLALIKPDAVAHP-LILEAVHQQILSNKFLIVRMKELLWRKEECQKFYQEHEGRFFYQRL 202
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGPI A + R DAI W+ L+GP AR AP SIR FG RN HG D
Sbjct: 203 VEYMASGPIRAYILARKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 262
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 263 SVISASREIAAFFP 276
>ref|XP_534114.2| PREDICTED: similar to Nucleoside diphosphate kinase, mitochondrial
precursor (NDP kinase, mitochondrial) (NDK) (nm23-H4)
(Nucleoside diphosphate kinase D) (NDPKD) [Canis
familiaris].
Length = 773
Score = 88.2 bits (217), Expect = 1e-17
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = +2
Query: 353 KEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
+E+TL +KPD V + G++I+ + GF L +KM+ + + H D Q +PF
Sbjct: 623 RERTLVAVKPDGVQRRLVGDVIQRFERRGFKLVGMKMLQAPERVLAEHHHDLQRKPFYPP 682
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP 706
LI ++TSGP++AM +C + ++G +S A PG+IR F RN H
Sbjct: 683 LISYMTSGPVVAMVWEGPSVVCSSRTMIGHTDSAEA---TPGTIRGDFSIHISRNIIHAS 739
Query: 707 DSLSCAAREMELFFPSS 757
DS+ A RE++L+F SS
Sbjct: 740 DSVEGARREIQLWFQSS 756
>ref|XP_542805.2| PREDICTED: similar to Thioredoxin domain containing protein 6
(Thioredoxin-like protein 2) (Txl-2) [Canis familiaris].
Length = 551
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Frame = +2
Qu
Animal-Genome cDNA 20110601C-015176
Animal-Genome cDNA 20110601C-015176
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015656.1| nucleoside diphosphate kinase 7 [Bos taurus]. 661 0.0
Alignment gi|XP_002689257.1| PREDICTED: non-metastatic cells 5, protein e... 122 7e-28
Alignment gi|NP_001178145.1| nucleoside diphosphate kinase homolog 5 [Bos... 117 2e-26
Alignment gi|NP_001179148.1| nucleoside diphosphate kinase 6 [Bos taurus]. 91 2e-18
Alignment gi|XP_002697101.1| PREDICTED: nucleoside diphosphate kinase typ... 91 2e-18
Alignment gi|XP_002697100.1| PREDICTED: nucleoside diphosphate kinase typ... 91 2e-18
Alignment gi|XP_886453.2| PREDICTED: nucleoside diphosphate kinase type 6... 91 2e-18
Alignment gi|NP_001069083.1| thioredoxin domain-containing protein 6 [Bos... 82 1e-15
Alignment gi|NP_001092456.1| nucleoside diphosphate kinase 3 [Bos taurus]. 79 7e-15
Alignment gi|NP_991346.2| nucleoside diphosphate kinase A 1 [Bos taurus]. 77 3e-14
>ref|NP_001015656.1| nucleoside diphosphate kinase 7 [Bos taurus].
Length = 377
Score = 661 bits (1705), Expect = 0.0
Identities = 319/333 (95%), Positives = 330/333 (99%)
Frame = +2
Query: 83 MNHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDL 262
MNHSERFVFIAEW+DPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDL
Sbjct: 1 MNHSERFVFIAEWFDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDL 60
Query: 263 FIGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTL 442
FIGNKVN+FSRQLVL+DYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTL
Sbjct: 61 FIGNKVNIFSRQLVLLDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTL 120
Query: 443 TKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPAN 622
TKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDA+CEWK+LLGPAN
Sbjct: 121 TKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAVCEWKRLLGPAN 180
Query: 623 SGLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCT 802
SGLARTDAP SIRA+FGTDGI+NAAHGPDS +CAAREMELFFPSSGVCGPANTAKFTNCT
Sbjct: 181 SGLARTDAPESIRALFGTDGIKNAAHGPDSFACAAREMELFFPSSGVCGPANTAKFTNCT 240
Query: 803 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 982
TCCIVKPHA+SEGLLGKILM IRDAGFEISAMQMFNMDR+NVEEFYEVYKGVVSEYNEMV
Sbjct: 241 TCCIVKPHAVSEGLLGKILMTIRDAGFEISery: 347 SKKEKTLALIKPDAVS--KAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
S K TLA+IKPDAV+ K EII I++AGF + + T++ E F+
Sbjct: 334 SGKTCTLAIIKPDAVAHGKTDEIIMKIHEAGFDILTNEERTMTEAEMRLFYQHRAGEEAF 393
Query: 521 NELIQFITSGPIIAMEILR----DDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIR 688
+L+ + SGP + + R +D I W+ L+GP + +AR + P S+RA FGT+
Sbjct: 394 EKLVHHMCSGPSHLLILTRSEGTEDVITAWRMLMGPCDPDVARREQPDSLRAQFGTEMPF 453
Query: 689 NAAHGPDSLSCAAREMELFFPS 754
NA HG A+RE+ L FP+
Sbjct: 454 NAVHGSQDRDDASRELALLFPT 475
>ref|XP_852718.1| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 152
Score = 77.8 bits (190), Expect = 2e-14
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Frame = +2
Query: 347 SKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
+ E+T IKPD V + GEII+ + + GF L +K++ S + +ID + RPF
Sbjct: 2 ANSERTFIAIKPDGVQRNLVGEIIKRLEQKGFCLIAMKLIQASEDLLKEHYIDLKDRPFF 61
Query: 521 NELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAH 700
L++++ SGP++A +A+ + +LG N G ++ PG+IR F RN H
Sbjct: 62 AGLVKYMQSGPVVATVWEGLNAVKTGRVMLGETNPGESK---PGTIRGDFCIQVGRNVIH 118
Query: 701 GPDSLSCAAREMELFF 748
G DS+ A +E+ L+F
Sbjct: 119 GSDSVESAEKEIGLWF 134
>ref|NP_001019808.1| nucleoside diphosphate kinase A [Canis lupus familiaris].
Length = 152
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 347 SKKEKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
+ E+T IKPD V ++ GEII+ + GF L +K++ S + +ID + RPF
Sbjct: 2 ANSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFF 61
Query: 521 NELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAH 700
L++++ SGP++AM + + + +LG N ++ PG+IR F RN H
Sbjct: 62 AGLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 118
Query: 701 GPDSLSCAAREMELFF 748
G DS+ A +E+ L+F
Sbjct: 119 GSDSVESAEKEIGLWF 134
>ref|NP_001019809.1| nucleoside diphosphate kinase B [Canis lupus familiaris].
Length = 152
Score = 73.6 bits (179), Expect = 3e-13
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +2
Query: 353 KEKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
+E+T IKPD V + G+I++ + GF L +K + S + +ID + RPF
Sbjct: 4 QERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPG 63
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP 706
L++++ SGP++AM + + + +LG N ++ PG+IR F RN HG
Sbjct: 64 LVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSK---PGTIRGDFCIQVGRNIIHGS 120
Query: 707 DSLSCAAREMELFF 748
DS+ A +E+ L+F
Sbjct: 121 DSVKSAEKEISLWF 134
>ref|XP_854796.1| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 169
Score = 72.0 bits (175), Expect = 9e-13
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 362 TLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
T IKPD V + GEII+ + GF LT +K++ S + +ID + RPF L++
Sbjct: 11 TFIAIKPDGVQRNFVGEIIKCFKQKGFCLTAMKLIQASEDLLKEHYIDLKDRPFFAGLVK 70
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
++ SGP++AM + + + +LG N ++ PG+IR F RN HG DS+
Sbjct: 71 YMQSGPVVAMVLEGLNVVKTGLVMLGETNPVDSK---PGTIRGDFCIQVDRNIIHGSDSV 127
Query: 716 SCAAREMELF 745
A +E+ L+
Sbjct: 128 ESAEKEIGLW 137
>ref|XP_533973.2| PREDICTED: similar to expressed in non-metastatic cells 1, protein
(NM23A) (nucleoside diphosphate kinase) [Canis
familiaris].
Length = 152
Score = 70.9 bits (172), Expect = 2e-12
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Frame = +2
Query: 347 SKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
+ E+T IKPD V + GEII+ + GF L +K++ S + +ID + RPF
Sbjct: 2 ANSERTFIAIKPDGVQRNLLGEIIKCFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFF 61
Query: 521 NELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAH 700
L +++ SGP++AM + + + +LG N ++ PG+IR F RN H
Sbjct: 62 ASLEKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 118
Query: 701 GPDSLSCAAREMELFF 748
G DS+ +E+ ++F
Sbjct: 119 GSDSVESVEKEIGVWF 134
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,708,354
Number of extensions: 942559
Number of successful extensions: 1991
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1971
Number of HSP's successfully gapped: 15
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
AMQMFNMDRINVEEFYEVYKGVVSEYNEMV 300
Query: 983 TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEM 1081
TEMYSGPCVAMEIQQTNPTMTFREFCGPADPE+
Sbjct: 301 TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEI 333
Score = 74.7 bits (182), Expect = 1e-13
Identities = 43/132 (32%), Positives = 74/132 (56%), Gaps = 3/132 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPF-LNELI 532
T ++KP AVS+ G+I+ I AGF ++ ++M + R +F+ ++ NE++
Sbjct: 241 TCCIVKPHAVSEGLLGKILMTIRDAGFEISAMQMFNMDRINVEEFYEVYKGVVSEYNEMV 300
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ SGP +AMEI + + +++ GPA+ +AR PG++RA+FG I+NA H D
Sbjct: 301 TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDL 360
Query: 713 LSCAAREMELFF 748
E++ FF
Sbjct: 361 PEDGLLEVQYFF 372
>ref|XP_002689257.1| PREDICTED: non-metastatic cells 5, protein expressed in
(nucleoside-diphosphate kinase)-like [Bos taurus].
Length = 209
Score = 122 bits (305), Expect = 7e-28
Identities = 57/133 (42%), Positives = 91/133 (68%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLA+IKPD V K EI +II ++GFT+ + + + LS + ++F+++ + F L
Sbjct: 13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYVEQYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R +AI WK+LLGP+NS +A+ P S+RA++GTD +RNA HG +
Sbjct: 73 YMSSGPLVAMILARYNAISYWKELLGPSNSLVAKETHPDSLRAIYGTDELRNALHGSNDF 132
Query: 716 SCAAREMELFFPS 754
+ A RE+ FP+
Sbjct: 133 AAAEREIRFMFPA 145
>ref|NP_001178145.1| nucleoside diphosphate kinase homolog 5 [Bos taurus].
Length = 209
Score = 117 bits (293), Expect = 2e-26
Identities = 54/133 (40%), Positives = 89/133 (66%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLA+IKPD V K EI +II ++GFT+ + + + LS + ++F+++ + F L
Sbjct: 13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYVEQYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R +AI WK+LLGP+NS +A+ P S+RA++GTD ++NA HG +
Sbjct: 73 YMSSGPLVAMILARYNAISYWKELLGPSNSLVAKETHPDSLRAIYGTDDLKNALHGSNDF 132
Query: 716 SCAAREMELFFPS 754
+ RE+ P+
Sbjct: 133 AAVEREIRFMLPA 145
>ref|NP_001179148.1| nucleoside diphosphate kinase 6 [Bos taurus].
Length = 186
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINK----AGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + +++ + +++ +F +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAVHQQILSTSFLIVRMRELLWRKEDFQNFFREHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_002697101.1| PREDICTED: nucleoside diphosphate kinase type 6-like isoform 2 [Bos
taurus].
Length = 186
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAVHQQILSNKFLIVRMRELLWRKEDCQKFYREHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_002697100.1| PREDICTED: nucleoside diphosphate kinase type 6-like isoform 1 [Bos
taurus].
Length = 186
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAVHQQILSNKFLIVRMRELLWRKEDCQKFYREHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_886453.2| PREDICTED: nucleoside diphosphate kinase type 6-like isoform 6 [Bos
taurus].
Length = 186
Score = 90.9 bits (224), Expect = 2e-18
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINK----AGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + +++ + +++ +F +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAVHQQILSTSFLIVRMRELLWRKEDFQNFFREHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|NP_001069083.1| thioredoxin domain-containing protein 6 [Bos taurus].
Length = 342
Score = 81.6 bits (200), Expect = 1e-15
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Frame = +2
Query: 341 LGSKKEKTLALIKPDAV--SKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRP 514
+ S+K TLA+IKPDAV K EII I +AGF + + T++ E F+
Sbjct: 154 VSSEKACTLAIIKPDAVVHGKTDEIIMKIQEAGFDILTNEERTMTEAEMRLFYQHRAGED 213
Query: 515 FLNELIQFITSGP----IIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDG 682
+L+ + SGP I+A +D + W+ L+GP + +AR + P S+RA +GT+
Sbjct: 214 TFEKLVHHMCSGPSHLLILARTEGTEDVVTAWRTLMGPCDPHVARREQPDSLRAQYGTEM 273
Query: 683 IRNAAHGPDSLSCAAREMELFFP 751
NA HG A RE+ L FP
Sbjct: 274 PFNAVHGSWDSEDARRELALLFP 296
>ref|NP_001092456.1| nucleoside diphosphate kinase 3 [Bos taurus].
Length = 169
Score = 79.0 bits (193), Expect = 7e-15
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Frame = +2
Query: 299 LVLIDYGDQYTARQLGSKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSR 472
LVL + + + A G E+T +KPD V + GEI+ + GF L LK++ S
Sbjct: 4 LVLTIFANLFPAAYTGVH-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62
Query: 473 KEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPG 652
+ + + + + RPF L++++ SGP++AM D + + L+G N A PG
Sbjct: 63 ELLREHYAELRERPFFGRLVKYMGSGPVVAMVWQGLDVVRASRALIGATNPADA---TPG 119
Query: 653 SIRAVFGTDGIRNAAHGPDSLSCAAREMELFF 748
+IR F + +N HG DS+ A RE+ L+F
Sbjct: 120 TIRGDFCIEVGKNVIHGSDSVESARREIALWF 151
>ref|NP_991346.2| nucleoside diphosphate kinase A 1 [Bos taurus].
Length = 152
Score = 77.0 bits (188), Expect = 3e-14
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Frame = +2
Query: 347 SKKEKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
+ E+T IKPD V + GEII+ + GF L +K M S + +ID + RPF
Sbjct: 2 ANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFF 61
Query: 521 NELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAH 700
L++++ SGP++AM + + + +LG N ++ PG+IR F RN H
Sbjct: 62 AGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIH 118
Query: 701 GPDSLSCAAREMELFFPSSGVCGPANTAKFTNC 799
G DS+ A +E+ L+F P + NC
Sbjct: 119 GSDSVESAEKEIALWF------HPEELVNYKNC 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,097,319
Number of extensions: 914525
Number of successful extensions: 2008
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1989
Number of HSP's successfully gapped: 16
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355116.1| PREDICTED: nucleoside diphosphate kinase 7, ... 674 0.0
Alignment gi|XP_003354337.1| PREDICTED: nucleoside diphosphate kinase hom... 122 3e-28
Alignment gi|XP_003130323.2| PREDICTED: thioredoxin domain-containing pro... 119 4e-27
Alignment gi|XP_003132229.1| PREDICTED: nucleoside diphosphate kinase 6-l... 91 9e-19
Alignment gi|XP_003132228.1| PREDICTED: nucleoside diphosphate kinase 6-l... 91 9e-19
Alignment gi|XP_003132227.1| PREDICTED: nucleoside diphosphate kinase 6-l... 91 9e-19
Alignment gi|XP_003132226.1| PREDICTED: nucleoside diphosphate kinase 6-l... 91 9e-19
Alignment gi|XP_003132225.1| PREDICTED: nucleoside diphosphate kinase 6-l... 91 9e-19
Alignment gi|NP_001137192.1| nucleoside diphosphate kinase, mitochondrial... 85 8e-17
Alignment gi|XP_003124767.1| PREDICTED: nucleoside diphosphate kinase 3-l... 79 4e-15
>ref|XP_003355116.1| PREDICTED: nucleoside diphosphate kinase 7, partial [Sus scrofa].
Length = 372
Score = 674 bits (1738), Expect = 0.0
Identities = 331/332 (99%), Positives = 332/332 (100%)
Frame = +2
Query: 86 NHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDLF 265
NHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDLF
Sbjct: 1 NHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDLF 60
Query: 266 IGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTLT 445
IGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTLT
Sbjct: 61 IGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTLT 120
Query: 446 KLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANS 625
KLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANS
Sbjct: 121 KLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANS 180
Query: 626 GLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTT 805
GLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTT
Sbjct: 181 GLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTT 240
Query: 806 CCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVT 985
CCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVT
Sbjct: 241 CCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVT 300
Query: 986 EMYSGPCVAMEIQQTNPTMTFREFCGPADPEM 1081
EMYSGPCVAMEIQQTNPTMTFREFCGPADPE+
Sbjct: 301 EMYSGPCVAMEIQQTNPTMTFREFCGPADPEI 332
Score = 72.0 bits (175), Expect = 5e-13
Identities = 41/133 (30%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPF-LNELI 532
T ++KP A+S+ G+I+ I AGF ++ ++M + R +F+ ++ NE++
Sbjct: 240 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 299
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ SGP +AMEI + + +++ GPA+ +AR PG++RA+FG I+NA H D
Sbjct: 300 TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDL 359
Query: 713 LSCAAREMELFFP 751
E+++ P
Sbjct: 360 PEDGLLEVKIPLP 372
>ref|XP_003354337.1| PREDICTED: nucleoside diphosphate kinase homolog 5-like [Sus
scrofa].
Length = 212
Score = 122 bits (307), Expect = 3e-28
Identities = 57/133 (42%), Positives = 90/133 (67%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLA+IKPD V K EI +II ++GFT+ + + + LS + ++F+++ + F L
Sbjct: 13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLHLSPEHCSNFYVEQYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R AI WK+LLGP+NS +A+ P S+RA++GTD +RNA HG +
Sbjct: 73 YMSSGPLVAMVLARHKAISYWKELLGPSNSLIAKETHPDSLRAIYGTDELRNALHGSNDF 132
Query: 716 SCAAREMELFFPS 754
+ A RE+ FP+
Sbjct: 133 AAAEREIRFMFPA 145
>ref|XP_003130323.2| PREDICTED: thioredoxin domain-containing protein 3 [Sus scrofa].
Length = 546
Score = 119 bits (297), Expect = 4e-27
Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 2/247 (0%)
Frame = +2
Query: 344 GSKKEKTLALIKPDAV-SKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
G K EK LAL++PD K +++ II GF + + + LS +EA +++++ +
Sbjct: 265 GIKLEKILALLRPDLFHEKKEDVLNIIQDEGFKIMMQRQIVLSEEEAQTLCKEYENKDYF 324
Query: 521 NELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIR-NAA 697
LI+ +TSGP +A+ +LRD+ + WK+L+GP+ AR P S+ F + N
Sbjct: 325 ENLIKNMTSGPSLALVLLRDNCLMHWKQLIGPSTVEEAREHLPESLCIRFAMESSPINQL 384
Query: 698 HGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDA 877
+G DSL A RE++ FFP T ++KPH +S IL I++A
Sbjct: 385 YGSDSLEAAEREIQHFFPPQ--------------HTVALIKPH-VSPEQREDILKLIKEA 429
Query: 878 GFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREF 1057
GF+I+ ++ + ++ Y KG + Y +++ + GP + M + + N + +R
Sbjct: 430 GFDITQVKEVLLTEDQADKVYFKIKG-KAFYKDVLEILSEGPSLVMILTKWNAVLDWRRL 488
Query: 1058 CGPADPE 1078
GP DPE
Sbjct: 489 MGPTDPE 495
Score = 79.7 bits (195), Expect = 3e-15
Identities = 37/117 (31%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGE-IIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELI 532
+ T+ALIKP + E I+++I +AGF +T++K + L+ +A + + + F +++
Sbjct: 404 QHTVALIKPHVSPEQREDILKLIKEAGFDITQVKEVLLTEDQADKVYFKIKGKAFYKDVL 463
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHG 703
+ ++ GP + M + + +A+ +W++L+GP + AR +P S+RA +G + +RNA HG
Sbjct: 464 EILSEGPSLVMILTKWNAVLDWRRLMGPTDPEEARLLSPNSVRAQYGRNILRNAVHG 520
>ref|XP_003132229.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 5 [Sus
scrofa].
Length = 186
Score = 91.3 bits (225), Expect = 9e-19
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E I++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_003132228.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 4 [Sus
scrofa].
Length = 186
Score = 91.3 bits (225), Expect = 9e-19
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E I++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_003132227.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 3 [Sus
scrofa].
Length = 186
Score = 91.3 bits (225), Expect = 9e-19
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E I++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_003132226.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 2 [Sus
scrofa].
Length = 186
Score = 91.3 bits (225), Expect = 9e-19
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E I++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|XP_003132225.1| PREDICTED: nucleoside diphosphate kinase 6-like isoform 1 [Sus
scrofa].
Length = 186
Score = 91.3 bits (225), Expect = 9e-19
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E I++ F + +++ + +++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ ++GP AR AP SIR FG RN HG D
Sbjct: 73 VEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|NP_001137192.1| nucleoside diphosphate kinase, mitochondrial [Sus scrofa].
Length = 187
Score = 84.7 bits (208), Expect = 8e-17
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = +2
Query: 353 KEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
+E+TL +KPD V + G++I+ + GF L +KM+ + + + + + +PF
Sbjct: 37 RERTLVAVKPDGVQRRLGGDVIQRFERRGFKLVGMKMLQVPESLLAEHYHELRRKPFYPA 96
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP 706
LI +++SGP++AM + +C + ++G NS A APG+IR F RN H
Sbjct: 97 LISYMSSGPVVAMVWEGPNVVCASRAMIGHTNSAEA---APGTIRGDFSIHISRNVIHAS 153
Query: 707 DSLSCAAREMELFFPSS 757
DS+ A RE++L+F SS
Sbjct: 154 DSVEGAQREIQLWFQSS 170
>ref|XP_003124767.1| PREDICTED: nucleoside diphosphate kinase 3-like [Sus scrofa].
Length = 170
Score = 79.0 bits (193), Expect = 4e-15
Identities = 48/152 (31%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Frame = +2
Query: 299 LVLIDYGDQYTARQLGSKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSR 472
LVL + + + A E+T +KPD V + GEI+ + GF L LK++ S
Sbjct: 4 LVLTIFANLFPAAAYTGVHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 63
Query: 473 KEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPG 652
+ + + + + RPF L++++ SGP++AM D + + L+G N A PG
Sbjct: 64 ELLREHYAELRERPFYGRLVKYMGSGPVVAMVWQGLDVVRASRALIGATNPVDA---TPG 120
Query: 653 SIRAVFGTDGIRNAAHGPDSLSCAAREMELFF 748
+IR F + +N HG DS+ A RE+ L+F
Sbjct: 121 TIRGDFCIEVGKNVIHGSDSVESARREIALWF 152
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,769,538
Number of extensions: 580554
Number of successful extensions: 1340
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 14
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612187.2| nucleoside diphosphate kinase 7 isoform 1 [Mus ... 598 e-171
Alignment gi|NP_835172.1| nucleoside diphosphate kinase 7 isoform 2 [Mus ... 462 e-130
Alignment gi|NP_542368.2| nucleoside diphosphate kinase homolog 5 [Mus mu... 119 4e-27
Alignment gi|NP_853622.2| thioredoxin domain-containing protein 3 isoform... 91 2e-18
Alignment gi|NP_061227.1| nucleoside diphosphate kinase 6 [Mus musculus]. 89 6e-18
Alignment gi|NP_062705.1| nucleoside diphosphate kinase, mitochondrial pr... 81 1e-15
Alignment gi|NP_001159429.1| thioredoxin domain-containing protein 6 [Mus... 80 2e-15
Alignment gi|NP_062704.2| nucleoside diphosphate kinase 3 [Mus musculus]. 79 6e-15
Alignment gi|NP_001070997.1| nucleoside diphosphate kinase B [Mus musculu... 77 3e-14
Alignment gi|NP_032731.1| nucleoside diphosphate kinase B [Mus musculus]. 77 3e-14
>ref|NP_612187.2| nucleoside diphosphate kinase 7 isoform 1 [Mus musculus].
Length = 395
Score = 598 bits (1542), Expect = e-171
Identities = 289/332 (87%), Positives = 314/332 (94%)
Frame = +2
Query: 86 NHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDLF 265
N SERF FIAEWYDPNASL RRYELLFYP DGSVEMHDVKN RTFLKRTKYEDL LEDLF
Sbjct: 21 NQSERFAFIAEWYDPNASLLRRYELLFYPTDGSVEMHDVKNRRTFLKRTKYEDLRLEDLF 80
Query: 266 IGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTLT 445
IGNKVNVFSRQLVLIDYGDQYTARQLGS+KEKTLALIKPDAVSKAGEIIE+INK+GFT+T
Sbjct: 81 IGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAVSKAGEIIEMINKSGFTIT 140
Query: 446 KLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANS 625
KL+MMTL+RKEA DFH+DH SRPF NELIQFITSGP+IAMEILRDDAICEWK+LLGPANS
Sbjct: 141 KLRMMTLTRKEAADFHVDHHSRPFYNELIQFITSGPVIAMEILRDDAICEWKRLLGPANS 200
Query: 626 GLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTT 805
GL+RTDAPGSIRA+FGTDG+RNAAHGPD+ + AAREMELFFPSSG CGPANTAKFTNC T
Sbjct: 201 GLSRTDAPGSIRALFGTDGVRNAAHGPDTFASAAREMELFFPSSGGCGPANTAKFTNC-T 259
Query: 806 CCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVT 985
CCI+KPHAISEG+LGKIL+AIRDA F +SA+QMFN+DR NVEEFYEVYKGVVSEYN+MVT
Sbjct: 260 CCIIKPHAISEGMLGKILIAIRDACFGMSAIQMFNLDRANVEEFYEVYKGVVSEYNDMVT 319
Query: 986 EMYSGPCVAMEIQQTNPTMTFREFCGPADPEM 1081
E+ SGPCVA+EIQQ+NPT TFREFCGPADPE+
Sbjct: 320 ELCSGPCVAIEIQQSNPTKTFREFCGPADPEI 351
Score = 66.2 bits (160), Expect = 4e-11
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPF-LNELI 532
T +IKP A+S+ G+I+ I A F ++ ++M L R +F+ ++ N+++
Sbjct: 259 TCCIIKPHAISEGMLGKILIAIRDACFGMSAIQMFNLDRANVEEFYEVYKGVVSEYNDMV 318
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ SGP +A+EI + + +++ GPA+ +AR P ++RA+FG ++NA H D
Sbjct: 319 TELCSGPCVAIEIQQSNPTKTFREFCGPADPEIARHLRPETLRAIFGKTKVQNAVHCTDL 378
Query: 713 LSCAAREMELFF 748
E++ FF
Sbjct: 379 PEDGLLEVQYFF 390
>ref|NP_835172.1| nucleoside diphosphate kinase 7 isoform 2 [Mus musculus].
Length = 277
Score = 462 bits (1189), Expect = e-130
Identities = 224/253 (88%), Positives = 239/253 (94%)
Frame = +2
Query: 86 NHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDLF 265
N SERF FIAEWYDPNASL RRYELLFYP DGSVEMHDVKN RTFLKRTKYEDL LEDLF
Sbjct: 21 NQSERFAFIAEWYDPNASLLRRYELLFYPTDGSVEMHDVKNRRTFLKRTKYEDLRLEDLF 80
Query: 266 IGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTLT 445
IGNKVNVFSRQLVLIDYGDQYTARQLGS+KEKTLALIKPDAVSKAGEIIE+INK+GFT+T
Sbjct: 81 IGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAVSKAGEIIEMINKSGFTIT 140
Query: 446 KLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANS 625
KL+MMTL+RKEA DFH+DH SRPF NELIQFITSGP+IAMEILRDDAICEWK+LLGPANS
Sbjct: 141 KLRMMTLTRKEAADFHVDHHSRPFYNELIQFITSGPVIAMEILRDDAICEWKRLLGPANS 200
Query: 626 GLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCTT 805
GL+RTDAPGSIRA+FGTDG+RNAAHGPD+ + AAREMELFFPSSG CGPANTAKFTNC T
Sbjct: 201 GLSRTDAPGSIRALFGTDGVRNAAHGPDTFASAAREMELFFPSSGGCGPANTAKFTNC-T 259
Query: 806 CCIVKPHAISEGL 844
CCI+KPHAISE L
Sbjct: 260 CCIIKPHAISEDL 272
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/90 (30%), Positives = 50/90 (55%)
Frame = +2
Query: 803 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 982
T ++KP A+S+ G+I+ I +GF I+ ++M + R +F+ + YNE++
Sbjct: 113 TLALIKPDAVSKA--GEIIEMINKSGFTITKLRMMTLTRKEAADFHVDHHSRPF-YNELI 169
Query: 983 TEMYSGPCVAMEIQQTNPTMTFREFCGPAD 1072
+ SGP +AMEI + + ++ GPA+
Sbjct: 170 QFITSGPVIAMEILRDDAICEWKRLLGPAN 199
>ref|NP_542368.2| nucleoside diphosphate kinase homolog 5 [Mus musculus].
Length = 211
Score = 119 bits (298), Expect = 4e-27
Identities = 56/133 (42%), Positives = 89/133 (66%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLALIKPD V K EI +II +GFT+ + + + LS + ++F+++ + F L
Sbjct: 13 EKTLALIKPDVVDKEEEIQDIILGSGFTIIQRRKLHLSPEHCSNFYVEQYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R AI WK+L+GP+NS +A+ P S+RA++GTD +RNA HG +
Sbjct: 73 YMSSGPLVAMILARHKAISYWKELMGPSNSLVAKETHPDSLRAIYGTDELRNALHGSNDF 132
Query: 716 SCAAREMELFFPS 754
+ + RE+ FP+
Sbjct: 133 AASEREIRFMFPA 145
>ref|NP_853622.2| thioredoxin domain-containing protein 3 isoform 1 [Mus musculus].
Length = 586
Score = 90.9 bits (224), Expect = 2e-18
Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 3/244 (1%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA-GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELI 532
+ TLAL+ PD + +++ +I+ GFT+ + + LS +EA H++ + + LI
Sbjct: 313 QTTLALLHPDICEEEKDDVLNVIHNEGFTILMQRQIVLSEEEARTVCKIHENEEYFDNLI 372
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGI-RNAAHGPD 709
+TS + + R++ + WK L+GP A P S+ F + N +G
Sbjct: 373 GHMTSNHSYVLALRRENGVEYWKTLIGPKTIEEAYASHPQSLCVQFASGNFPTNQFYGSS 432
Query: 710 SLSCAAREMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGFEI 889
S + A +E+ FFP +T ++KPH + + +IL I++AGFE+
Sbjct: 433 SKAAAEKEIAHFFPPQ--------------STLALIKPHVTHKERM-EILKTIKEAGFEL 477
Query: 890 SAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVTEMYS-GPCVAMEIQQTNPTMTFREFCGP 1066
+ M+ ++ + + Y +K ++ + V E+ S G + M + + N +R GP
Sbjct: 478 TLMKEMHLTPEHANKIY--FKITGKDFYKNVLEVLSLGMSLVMVLTKWNAVAEWRRMVGP 535
Query: 1067 ADPE 1078
DPE
Sbjct: 536 VDPE 539
Score = 79.7 bits (195), Expect = 4e-15
Identities = 42/125 (33%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAG-EIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELI 532
+ TLALIKP K EI++ I +AGF LT +K M L+ + A + + F ++
Sbjct: 448 QSTLALIKPHVTHKERMEILKTIKEAGFELTLMKEMHLTPEHANKIYFKITGKDFYKNVL 507
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ ++ G + M + + +A+ EW++++GP + A+ +P S+RA +G D +RNA HG +
Sbjct: 508 EVLSLGMSLVMVLTKWNAVAEWRRMVGPVDPEEAKLLSPESLRAKYGLDILRNAVHGASN 567
Query: 713 LSCAA 727
S A+
Sbjct: 568 FSEAS 572
>ref|NP_061227.1| nucleoside diphosphate kinase 6 [Mus musculus].
Length = 189
Score = 89.0 bits (219), Expect = 6e-18
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + + + + ++ F+ +H+ R F L
Sbjct: 14 TLALIKPDAVAHP-LILEAVHQQILSNKFLIVRTRELQWKLEDCRRFYREHEGRFFYQRL 72
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+TSGPI A + DAI W+ L+GP AR AP SIR G RN HG D
Sbjct: 73 VEFMTSGPIRAYILAHKDAIQLWRTLMGPTRVFRARYIAPDSIRGSLGLTDTRNTTHGSD 132
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 133 SVVSASREIAAFFP 146
>ref|NP_062705.1| nucleoside diphosphate kinase, mitochondrial precursor [Mus
musculus].
Length = 186
Score = 81.3 bits (199), Expect = 1e-15
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 2/151 (1%)
Frame = +2
Query: 353 KEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
+E+TL +KPD V + G +I+ + GF L +KM+ + + D Q +PF
Sbjct: 36 QERTLVAVKPDGVQRRLVGTVIQRFERRGFKLVGMKMLQAPESILAEHYRDLQRKPFYPA 95
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP 706
LI +++SGP++AM + + + ++G +S A APG+IR F RN H
Sbjct: 96 LISYMSSGPVVAMVWEGPNVVHISRAMIGHTDSTEA---APGTIRGDFSVHISRNVIHAS 152
Query: 707 DSLSCAAREMELFFPSSGVCGPANTAKFTNC 799
DS+ A RE+EL+F SS + A+ ++C
Sbjct: 153 DSVDGAQREIELWFQSSELLNWADGGHHSSC 183
>ref|NP_001159429.1| thioredoxin domain-containing protein 6 [Mus musculus].
Length = 263
Score = 80.5 bits (197), Expect = 2e-15
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Frame = +2
Query: 347 SKKEKTLALIKPDAVS--KAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFL 520
S K TL +IKPDAV+ KA EII I +AGF + + TL+ E F+
Sbjct: 95 SGKTCTLGIIKPDAVAHGKAEEIIMKIQEAGFDILLKEERTLTEAEMQAFYQHRAREEAF 154
Query: 521 NELIQFITSGPIIAMEILR----DDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIR 688
L+ + SGP + + + +D + W+ LGP + +AR + P S+RA +GT+
Sbjct: 155 ERLVHHMCSGPSHLLILTKTEGTEDVVTAWRTFLGPCDPNVARREHPESLRAQYGTEMPF 214
Query: 689 NAAHGPDSLSCAAREMELFFPS 754
NA HG A RE+ L FPS
Sbjct: 215 NAVHGSRDREDANRELALLFPS 236
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +2
Query: 803 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 982
T I+KP A++ G +I+M I++AGF+I + + ++ FY+ ++ + +V
Sbjct: 100 TLGIIKPDAVAHGKAEEIIMKIQEAGFDILLKEERTLTEAEMQAFYQ-HRAREEAFERLV 158
Query: 983 TEMYSGPCVAMEIQQTNPT----MTFREFCGPADPEM 1081
M SGP + + +T T +R F GP DP +
Sbjct: 159 HHMCSGPSHLLILTKTEGTEDVVTAWRTFLGPCDPNV 195
>ref|NP_062704.2| nucleoside diphosphate kinase 3 [Mus musculus].
Length = 169
Score = 79.0 bits (193), Expect = 6e-15
Identities = 47/152 (30%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Frame = +2
Query: 299 LVLIDYGDQYTARQLGSKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSR 472
LVL + + + + G E+T +KPD V + GEI+ + GF L LK++ S
Sbjct: 4 LVLTIFANLFPSAYSGVN-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62
Query: 473 KEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPG 652
+ + +++ + +PF + L+++++SGP++AM D + + L+G + G A PG
Sbjct: 63 ELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDA---MPG 119
Query: 653 SIRAVFGTDGIRNAAHGPDSLSCAAREMELFF 748
+IR F + +N HG DS+ A RE+ L+F
Sbjct: 120 TIRGDFCMEVGKNVIHGSDSVESAHREIALWF 151
>ref|NP_001070997.1| nucleoside diphosphate kinase B [Mus musculus].
Length = 152
Score = 76.6 bits (187), Expect = 3e-14
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
E+T IKPD V + GEII+ + GF L +K + S + +ID + RPF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGP++AM + + + +LG N ++ PG+IR F RN HG D
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 710 SLSCAAREMELFF 748
S+ A +E+ L+F
Sbjct: 122 SVESAEKEIHLWF 134
>ref|NP_032731.1| nucleoside diphosphate kinase B [Mus musculus].
Length = 152
Score = 76.6 bits (187), Expect = 3e-14
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
E+T IKPD V + GEII+ + GF L +K + S + +ID + RPF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGP++AM + + + +LG N ++ PG+IR F RN HG D
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 710 SLSCAAREMELFF 748
S+ A +E+ L+F
Sbjct: 122 SVESAEKEIHLWF 134
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,667,216
Number of extensions: 805882
Number of successful extensions: 1796
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1774
Number of HSP's successfully gapped: 18
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037462.1| nucleoside diphosphate kinase 7 isoform a [Homo... 623 e-178
Alignment gi|NP_932076.1| nucleoside diphosphate kinase 7 isoform b [Homo... 549 e-156
Alignment gi|NP_057700.3| thioredoxin domain-containing protein 3 [Homo s... 121 1e-27
Alignment gi|NP_003542.1| nucleoside diphosphate kinase homolog 5 [Homo s... 119 6e-27
Alignment gi|NP_005784.1| nucleoside diphosphate kinase 6 [Homo sapiens]. 92 1e-18
Alignment gi|NP_005000.1| nucleoside diphosphate kinase, mitochondrial pr... 82 1e-15
Alignment gi|NP_835231.1| thioredoxin domain-containing protein 6 [Homo s... 81 1e-15
Alignment gi|NP_002504.2| nucleoside diphosphate kinase 3 [Homo sapiens]. 79 7e-15
Alignment gi|NP_001018146.1| NME1-NME2 protein [Homo sapiens]. 77 3e-14
Alignment gi|NP_001018149.1| nucleoside diphosphate kinase B isoform a [H... 77 4e-14
>ref|NP_037462.1| nucleoside diphosphate kinase 7 isoform a [Homo sapiens].
Length = 376
Score = 623 bits (1606), Expect = e-178
Identities = 304/333 (91%), Positives = 320/333 (96%)
Frame = +2
Query: 83 MNHSERFVFIAEWYDPNASLFRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYEDLHLEDL 262
MNHSERFVFIAEWYDPNASL RRYELLFYPGDGSVEMHDVKNHRTFLKRTKY++LHLEDL
Sbjct: 1 MNHSERFVFIAEWYDPNASLLRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYDNLHLEDL 60
Query: 263 FIGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLALIKPDAVSKAGEIIEIINKAGFTL 442
FIGNKVNVFSRQLVLIDYGDQYTARQLGS+KEKTLALIKPDA+SKAGEIIEIINKAGFT+
Sbjct: 61 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTI 120
Query: 443 TKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPAN 622
TKLKMM LSRKEA DFH+DHQSRPF NELIQFIT+GPIIAMEILRDDAICEWK+LLGPAN
Sbjct: 121 TKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPAN 180
Query: 623 SGLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAREMELFFPSSGVCGPANTAKFTNCT 802
SG+ARTDA SIRA+FGTDGIRNAAHGPDS + AAREMELFFPSSG CGPANTAKFTNC
Sbjct: 181 SGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNC- 239
Query: 803 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 982
TCCIVKPHA+SEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVV+EY++MV
Sbjct: 240 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV 299
Query: 983 TEMYSGPCVAMEIQQTNPTMTFREFCGPADPEM 1081
TEMYSGPCVAMEIQQ N T TFREFCGPADPE+
Sbjct: 300 TEMYSGPCVAMEIQQNNATKTFREFCGPADPEI 332
Score = 73.9 bits (180), Expect = 2e-13
Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPF-LNELI 532
T ++KP AVS+ G+I+ I AGF ++ ++M + R +F+ ++ ++++
Sbjct: 240 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV 299
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ SGP +AMEI +++A +++ GPA+ +AR PG++RA+FG I+NA H D
Sbjct: 300 TEMYSGPCVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDL 359
Query: 713 LSCAAREMELFF 748
E++ FF
Sbjct: 360 PEDGLLEVQYFF 371
>ref|NP_932076.1| nucleoside diphosphate kinase 7 isoform b [Homo sapiens].
Length = 340
Score = 549 bits (1414), Expect = e-156
Identities = 269/297 (90%), Positives = 285/297 (95%)
Frame = +2
Query: 191 MHDVKNHRTFLKRTKYEDLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSKKEKTLA 370
MHDVKNHRTFLKRTKY++LHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGS+KEKTLA
Sbjct: 1 MHDVKNHRTFLKRTKYDNLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLA 60
Query: 371 LIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQFITSG 550
LIKPDA+SKAGEIIEIINKAGFT+TKLKMM LSRKEA DFH+DHQSRPF NELIQFIT+G
Sbjct: 61 LIKPDAISKAGEIIEIINKAGFTITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTG 120
Query: 551 PIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSLSCAAR 730
PIIAMEILRDDAICEWK+LLGPANSG+ARTDA SIRA+FGTDGIRNAAHGPDS + AAR
Sbjct: 121 PIIAMEILRDDAICEWKRLLGPANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAR 180
Query: 731 EMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFN 910
EMELFFPSSG CGPANTAKFTNC TCCIVKPHA+SEGLLGKILMAIRDAGFEISAMQMFN
Sbjct: 181 EMELFFPSSGGCGPANTAKFTNC-TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFN 239
Query: 911 MDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCGPADPEM 1081
MDRVNVEEFYEVYKGVV+EY++MVTEMYSGPCVAMEIQQ N T TFREFCGPADPE+
Sbjct: 240 MDRVNVEEFYEVYKGVVTEYHDMVTEMYSGPCVAMEIQQNNATKTFREFCGPADPEI 296
Score = 73.9 bits (180), Expect = 2e-13
Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPF-LNELI 532
T ++KP AVS+ G+I+ I AGF ++ ++M + R +F+ ++ ++++
Sbjct: 204 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV 263
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDS 712
+ SGP +AMEI +++A +++ GPA+ +AR PG++RA+FG I+NA H D
Sbjct: 264 TEMYSGPCVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDL 323
Query: 713 LSCAAREMELFF 748
E++ FF
Sbjct: 324 PEDGLLEVQYFF 335
>ref|NP_057700.3| thioredoxin domain-containing protein 3 [Homo sapiens].
Length = 588
Score = 121 bits (303), Expect = 1e-27
Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 2/245 (0%)
Frame = +2
Query: 350 KKEKTLALIKPDAV-SKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
K EKTLAL++P+ + +++ II F + + + + LS KEA ++++ + N+
Sbjct: 314 KLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQVVLSEKEAQALCKEYENEDYFNK 373
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIR-NAAHG 703
LI+ +TSGP +A+ +LRD+ + WK+LLGP A P S+ A F D + N +G
Sbjct: 374 LIENMTSGPSLALVLLRDNGLQYWKQLLGPRTVEEAIEYFPESLCAQFAMDSLPVNQLYG 433
Query: 704 PDSLSCAAREMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGF 883
DSL A RE++ FFP G ++KPHA SE +IL +++AGF
Sbjct: 434 SDSLETAEREIQHFFPLQSTLG--------------LIKPHATSE-QREQILKIVKEAGF 478
Query: 884 EISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCG 1063
+++ ++ + +E+ Y G Y +++ + GP + M + + N +R G
Sbjct: 479 DLTQVKKMFLTPEQIEKIYPKVTG-KDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMG 537
Query: 1064 PADPE 1078
P DPE
Sbjct: 538 PTDPE 542
Score = 82.0 bits (201), Expect = 9e-16
Identities = 41/117 (35%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGE-IIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELI 532
+ TL LIKP A S+ E I++I+ +AGF LT++K M L+ ++ + + F +L+
Sbjct: 451 QSTLGLIKPHATSEQREQILKIVKEAGFDLTQVKKMFLTPEQIEKIYPKVTGKDFYKDLL 510
Query: 533 QFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHG 703
+ ++ GP + M + + +A+ EW++L+GP + A+ +P SIRA FG ++N HG
Sbjct: 511 EMLSVGPSMVMILTKWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKLKNIVHG 567
>ref|NP_003542.1| nucleoside diphosphate kinase homolog 5 [Homo sapiens].
Length = 212
Score = 119 bits (297), Expect = 6e-27
Identities = 56/132 (42%), Positives = 88/132 (66%)
Frame = +2
Query: 356 EKTLALIKPDAVSKAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNELIQ 535
EKTLA+IKPD V K EI +II ++GFT+ + + + LS ++ ++F+++ + F L
Sbjct: 13 EKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTA 72
Query: 536 FITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPDSL 715
+++SGP++AM + R AI W +LLGP NS +A+ P S+RA++GTD +RNA HG +
Sbjct: 73 YMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDF 132
Query: 716 SCAAREMELFFP 751
+ A RE+ FP
Sbjct: 133 AAAEREIRFMFP 144
>ref|NP_005784.1| nucleoside diphosphate kinase 6 [Homo sapiens].
Length = 194
Score = 91.7 bits (226), Expect = 1e-18
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Frame = +2
Query: 362 TLALIKPDAVSKAGEIIEIINKA----GFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
TLALIKPDAV+ I+E +++ F + +++ + +++ F+ +H+ R F L
Sbjct: 22 TLALIKPDAVAHP-LILEAVHQQILSNKFLIVRMRELLWRKEDCQRFYREHEGRFFYQRL 80
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++F+ SGPI A + DAI W+ L+GP AR AP SIR FG RN HG D
Sbjct: 81 VEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSD 140
Query: 710 SLSCAAREMELFFP 751
S+ A+RE+ FFP
Sbjct: 141 SVVSASREIAAFFP 154
>ref|NP_005000.1| nucleoside diphosphate kinase, mitochondrial precursor [Homo
sapiens].
Length = 187
Score = 81.6 bits (200), Expect = 1e-15
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = +2
Query: 353 KEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNE 526
+E+TL +KPD V + G++I+ + GFTL +KM+ + + D + +PF
Sbjct: 37 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 96
Query: 527 LIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGP 706
LI++++SGP++AM + + + ++G +S A APG+IR F RN H
Sbjct: 97 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEA---APGTIRGDFSVHISRNVIHAS 153
Query: 707 DSLSCAAREMELFFPSS 757
DS+ A RE++L+F SS
Sbjct: 154 DSVEGAQREIQLWFQSS 170
>ref|NP_835231.1| thioredoxin domain-containing protein 6 [Homo sapiens].
Length = 263
Score = 81.3 bits (199), Expect = 1e-15
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Frame = +2
Query: 341 LGSKKEKTLALIKPDAVS--KAGEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRP 514
+ S++ TLA+IKPDAV+ K EII I +AGF + + T++ E F+
Sbjct: 93 VSSERTCTLAIIKPDAVAHGKTDEIIMKIQEAGFEILTNEERTMTEAEVRLFYQHKAGEE 152
Query: 515 FLNELIQFITSGPIIAMEILR----DDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDG 682
+L+ + SGP + + R +D + W+ ++GP + +AR + P S+RA +GT+
Sbjct: 153 AFEKLVHHMCSGPSHLLILTRTEGFEDVVTTWRTVMGPRDPNVARREQPESLRAQYGTEM 212
Query: 683 IRNAAHGPDSLSCAAREMELFFPS 754
NA HG A RE+ L FPS
Sbjct: 213 PFNAVHGSRDREDADRELALLFPS 236
Score = 52.0 bits (123), Expect = 1e-06
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +2
Query: 803 TCCIVKPHAISEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVSEYNEMV 982
T I+KP A++ G +I+M I++AGFEI + M V FY+ +K + ++V
Sbjct: 100 TLAIIKPDAVAHGKTDEIIMKIQEAGFEILTNEERTMTEAEVRLFYQ-HKAGEEAFEKLV 158
Query: 983 TEMYSGPCVAMEIQQT----NPTMTFREFCGPADPEM 1081
M SGP + + +T + T+R GP DP +
Sbjct: 159 HHMCSGPSHLLILTRTEGFEDVVTTWRTVMGPRDPNV 195
>ref|NP_002504.2| nucleoside diphosphate kinase 3 [Homo sapiens].
Length = 169
Score = 79.0 bits (193), Expect = 7e-15
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Frame = +2
Query: 299 LVLIDYGDQYTARQLGSKKEKTLALIKPDAVSK--AGEIIEIINKAGFTLTKLKMMTLSR 472
LVL + + + A G+ E+T +KPD V + GEI+ + GF L LK++ S
Sbjct: 4 LVLTIFANLFPAACTGAH-ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62
Query: 473 KEATDFHIDHQSRPFLNELIQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPG 652
+ + + + + RPF L++++ SGP++AM D + + L+G N A PG
Sbjct: 63 ELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADA---PPG 119
Query: 653 SIRAVFGTDGIRNAAHGPDSLSCAAREMELFF 748
+IR F + +N HG DS+ A RE+ L+F
Sbjct: 120 TIRGDFCIEVGKNLIHGSDSVESARREIALWF 151
>ref|NP_001018146.1| NME1-NME2 protein [Homo sapiens].
Length = 267
Score = 77.0 bits (188), Expect = 3e-14
Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 2/242 (0%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
E+T IKPD V + GEII+ + GF L LK M S + ++D + RPF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGL 64
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGP++AM + + + +LG N ++ PG+IR F R A+
Sbjct: 65 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRTMAN--- 118
Query: 710 SLSCAAREMELFFPSSGVCGPANTAKFTNCTTCCIVKPHAISEGLLGKILMAIRDAGFEI 889
+E T +KP + GL+G+I+ GF +
Sbjct: 119 --------LE--------------------RTFIAIKPDGVQRGLVGEIIKRFEQKGFRL 150
Query: 890 SAMQMFNMDRVNVEEFYEVYKGVVSEYNEMVTEMYSGPCVAMEIQQTNPTMTFREFCGPA 1069
AM+ ++++ Y K + +V M SGP VAM + N T R G
Sbjct: 151 VAMKFLRASEEHLKQHYIDLKD-RPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET 209
Query: 1070 DP 1075
+P
Sbjct: 210 NP 211
Score = 76.6 bits (187), Expect = 4e-14
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
E+T IKPD V + GEII+ + GF L +K + S + +ID + RPF L
Sbjct: 120 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 179
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGP++AM + + + +LG N ++ PG+IR F RN HG D
Sbjct: 180 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 236
Query: 710 SLSCAAREMELFF 748
S+ A +E+ L+F
Sbjct: 237 SVKSAEKEISLWF 249
>ref|NP_001018149.1| nucleoside diphosphate kinase B isoform a [Homo sapiens].
Length = 152
Score = 76.6 bits (187), Expect = 4e-14
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Frame = +2
Query: 356 EKTLALIKPDAVSKA--GEIIEIINKAGFTLTKLKMMTLSRKEATDFHIDHQSRPFLNEL 529
E+T IKPD V + GEII+ + GF L +K + S + +ID + RPF L
Sbjct: 5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGL 64
Query: 530 IQFITSGPIIAMEILRDDAICEWKKLLGPANSGLARTDAPGSIRAVFGTDGIRNAAHGPD 709
++++ SGP++AM + + + +LG N ++ PG+IR F RN HG D
Sbjct: 65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK---PGTIRGDFCIQVGRNIIHGSD 121
Query: 710 SLSCAAREMELFF 748
S+ A +E+ L+F
Sbjct: 122 SVKSAEKEISLWF 134
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,158,560
Number of extensions: 942367
Number of successful extensions: 2213
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2182
Number of HSP's successfully gapped: 21
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015176
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 414 e-113
Sscrofa_Chr17 64 2e-07
>Sscrofa_Chr04
|| Length = 143465943
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 523 tgagctgatccagtttattacaagtggccctataattgctatggagattttaagagatga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89336794 tgagctgatccagtttattacaagtggccctataattgctatggagattttaagagatga 89336853
Query: 583 tgctatatgcgaatggaaaaagcttcttggacctgcaaactctggactggcacgtacaga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89336854 tgctatatgcgaatggaaaaagcttcttggacctgcaaactctggactggcacgtacaga 89336913
Query: 643 tgctcctggaagcattagagccgtctttggaacagacggcataagaaatgcagctcacgg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89336914 tgctcctggaagcattagagccgtctttggaacagacggcataagaaatgcagctcacgg 89336973
Query: 703 ccctgattctttgtcttgtgctgccagag 731
|||||||||||||||||||||||||||||
Sbjct: 89336974 ccctgattctttgtcttgtgctgccagag 89337002
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 193 gcatgatgtaaagaatcatcgcacctttttaaagcggaccaaatatgaagaccttcactt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89319873 gcatgatgtaaagaatcatcgcacctttttaaagcggaccaaatatgaagaccttcactt 89319932
Query: 253 ggaagatttgtttataggcaacaaagtgaatgtcttttctcgacaactggtgctaattga 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89319933 ggaagatttgtttataggcaacaaagtgaatgtcttttctcgacaactggtgctaattga 89319992
Query: 313 ctatggggatcaatatacagctcgtcaactgggcagtaagaaagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89319993 ctatggggatcaatatacagctcgtcaactgggcagtaagaaagaaaa 89320040
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 361 aacactagccctgattaaaccagatgcagtatcaaaagctggagaaataattgaaataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89328802 aacactagccctgattaaaccagatgcagtatcaaaagctggagaaataattgaaataat 89328861
Query: 421 aaacaaagctggatttactctaaccaaactcaaaatgatgacgctttcgagg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89328862 aaacaaagctggatttactctaaccaaactcaaaatgatgacgctttcgagg 89328913
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 731 gaaatggagttattttttccttcgagtggagtctgtgggccagcaaacactgctaaattt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89341234 gaaatggagttattttttccttcgagtggagtctgtgggccagcaaacactgctaaattt 89341293
Query: 791 accaattgcactacttgttgcattgttaagccccatgccatcagtgaagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89341294 accaattgcactacttgttgcattgttaagccccatgccatcagtgaagg 89341343
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 85 gaatcacagtgaaagattcgttttcattgcagagtggtatgatccaaatgcttcactatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89318647 gaatcacagtgaaagattcgttttcattgcagagtggtatgatccaaatgcttcactatt 89318706
Query: 145 tcgacgttatgagcttttattttacccaggggatggatctgttgaaatg 193
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89318707 tcgacgttatgagcttttattttacccaggggatggatctgttgaaatg 89318755
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 2 agagtaacctggcgttggtgttggtgtaggtgttttccagtcgcaaagttacctatttcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89260894 agagtaacctggcgttggtgttggtgtaggtgttttccagtcgcaaagttacctatttcc 89260953
Query: 62 tggtgctgagatcccgaggcgatg 85
||||||||||||||||||||||||
Sbjct: 89260954 tggtgctgagatcccgaggcgatg 89260977
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 904 gttcaacatggatcgagttaatgttgaagagttttatgaagtttataaaggagtagtgtc 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89379853 gttcaacatggatcgagttaatgttgaagagttttatgaagtttataaaggagtagtgtc 89379912
Query: 964 tgaatataatg 974
|||||||||||
Sbjct: 89379913 tgaatataatg 89379923
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 838 aggactgctgggaaagatcctgatggctatccgagatgcaggttttgaaatctcagctat 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89377624 aggactgctgggaaagatcctgatggctatccgagatgcaggttttgaaatctcagctat 89377683
Query: 898 gcagatg 904
|||||||
Sbjct: 89377684 gcagatg 89377690
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 470 aggaaagaagcaactgattttcatatagatcatcagtcaaggccctttttaaa 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89335472 aggaaagaagcaactgattttcatatagatcatcagtcaaggccctttttaaa 89335524
>Sscrofa_Chr17
|| Length = 69701581
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 1012 catggagattcaacagactaatcctacaatgacttttcgagaattctgtggacctgctga 1071
|||||||| |||||| ||| |||| || ||||| ||| |||||||||||| |||||||||
Sbjct: 56360587 catggagactcaacacactcatcccacgatgacattttgagaattctgtgcacctgctga 56360646
Query: 1072 tcct 1075
||||
Sbjct: 56360647 tcct 56360650
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 1012 catggagattcaacagactaatcctacaatgacttttcgagaattctgtggacctgctga 1071
|||||||| |||||| ||| |||| || ||||| ||| |||||||||||| |||||||||
Sbjct: 56577688 catggagactcaacacactcatcccacgatgacattttgagaattctgtgcacctgctga 56577629
Query: 1072 tcct 1075
||||
Sbjct: 56577628 tcct 56577625
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,895,999
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 11
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)