Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039520.1| RNA 3'-terminal phosphate cyclase [Bos tauru... 474 e-134
Alignment gi|NP_001070599.1| RNA 3'-terminal phosphate cyclase-like prote... 91 1e-18
>ref|NP_001039520.1| RNA 3'-terminal phosphate cyclase [Bos taurus].
Length = 366
Score = 474 bits (1220), Expect = e-134
Identities = 236/243 (97%), Positives = 238/243 (97%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEM+R
Sbjct: 1 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLCDGQLEGAEIGSTEI FTPEKIKGG HTADTKTAGSVCLLMQVSMPCVLFAA PSELR
Sbjct: 61 DLCDGQLEGAEIGSTEITFTPEKIKGGVHTADTKTAGSVCLLMQVSMPCVLFAACPSELR 120
Query: 568 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 747
LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQL+P
Sbjct: 121 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLSP 180
Query: 748 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 927
INLTDRG VTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF
Sbjct: 181 INLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 240
Query: 928 ANG 936
NG
Sbjct: 241 GNG 243
>ref|NP_001070599.1| RNA 3'-terminal phosphate cyclase-like protein [Bos taurus].
Length = 373
Score = 90.9 bits (224), Expect = 1e-18
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 3/215 (1%)
Frame = +1
Query: 253 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCDGQLEGAEIGST 432
G LR LS L G P++++KIRA PGLR S + ++ + +G T
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKVTNGSRIEINQTGT 71
Query: 433 EIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDY 612
+ + P + GG+ D + ++ + F P + L+G TN ++ P +D
Sbjct: 72 TLYYQPGLLYGGSMEHDCSVLRGIGYYLESLLCLAPFMKHPLRIVLRGVTNDQVDPSVDV 131
Query: 613 TAMVFKPIVEKFGF---TFNCDIKMRGYYPKGGGEVIVRMSPVKQLNPINLTDRGSVTKI 783
P++++FG +F + RG P GGGEV K L PI L D G + +I
Sbjct: 132 LKATALPLLKQFGIDGESFELKVVRRGMPPGGGGEVFFSCPVRKVLKPIQLIDPGKIKRI 191
Query: 784 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
G A+ V P ++A + +A + K I D+Y+
Sbjct: 192 RGMAYSVRVSP-QMANRIVDSARSILNKFIPDIYI 225
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,867,516
Number of extensions: 1021924
Number of successful extensions: 5343
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5276
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-015200
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537054.2| PREDICTED: similar to RNA 3-terminal phosphate ... 475 e-134
Alignment gi|XP_853012.1| PREDICTED: similar to RNA 3-terminal phosphate ... 463 e-131
Alignment gi|XP_866686.1| PREDICTED: similar to RNA terminal phosphate cy... 272 5e-75
Alignment gi|XP_541299.2| PREDICTED: similar to RNA cyclase homolog [Cani... 93 3e-19
>ref|XP_537054.2| PREDICTED: similar to RNA 3-terminal phosphate cyclase
(RNA-3-phosphate cyclase) (RNA cyclase) isoform 1 [Canis
familiaris].
Length = 366
Score = 475 bits (1222), Expect = e-134
Identities = 237/243 (97%), Positives = 239/243 (98%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
MAG RVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEM+R
Sbjct: 1 MAGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLCDGQLEGAEIGSTEI+FTPEKIKGG HTADTKTAGSVCLLMQVSMPCVLFAASPSELR
Sbjct: 61 DLCDGQLEGAEIGSTEIIFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 120
Query: 568 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 747
LKGGTNAEMAPQIDYTAMVFKPIVEKFGF FNCDIKMRGYYPKGGGEVIVRMSPVKQLNP
Sbjct: 121 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFQFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 180
Query: 748 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 927
INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF
Sbjct: 181 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 240
Query: 928 ANG 936
NG
Sbjct: 241 GNG 243
>ref|XP_853012.1| PREDICTED: similar to RNA 3-terminal phosphate cyclase
(RNA-3-phosphate cyclase) (RNA cyclase) isoform 2 [Canis
familiaris].
Length = 379
Score = 463 bits (1192), Expect = e-131
Identities = 236/256 (92%), Positives = 238/256 (92%), Gaps = 13/256 (5%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLR----------- 354
MAG RVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGL
Sbjct: 1 MAGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLSRGACRSKIKVL 60
Query: 355 --PQHLSGLEMVRDLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSM 528
PQHLSGLEM+RDLCDGQLEGAEIGSTEI+FTPEKIKGG HTADTKTAGSVCLLMQVSM
Sbjct: 61 AGPQHLSGLEMIRDLCDGQLEGAEIGSTEIIFTPEKIKGGIHTADTKTAGSVCLLMQVSM 120
Query: 529 PCVLFAASPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGE 708
PCVLFAASPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGF FNCDIKMRGYYPKGGGE
Sbjct: 121 PCVLFAASPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFQFNCDIKMRGYYPKGGGE 180
Query: 709 VIVRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
VIVRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV
Sbjct: 181 VIVRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 240
Query: 889 NIQPVQEPKDQAFANG 936
NIQPVQEPKDQAF NG
Sbjct: 241 NIQPVQEPKDQAFGNG 256
>ref|XP_866686.1| PREDICTED: similar to RNA terminal phosphate cyclase domain 1
isoform 3 [Canis familiaris].
Length = 173
Score = 272 bits (696), Expect(2) = 5e-75
Identities = 136/140 (97%), Positives = 138/140 (98%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
MAG RVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEM+R
Sbjct: 1 MAGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLCDGQLEGAEIGSTEI+FTPEKIKGG HTADTKTAGSVCLLMQVSMPCVLFAASPSELR
Sbjct: 61 DLCDGQLEGAEIGSTEIIFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 120
Query: 568 LKGGTNAEMAPQIDYTAMVF 627
LKGGTNAEMAPQIDYTAMVF
Sbjct: 121 LKGGTNAEMAPQIDYTAMVF 140
Score = 28.1 bits (61), Expect(2) = 5e-75
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 615 GHGFQANC*KIWFHI 659
G+ FQANC KIWF I
Sbjct: 159 GNSFQANCGKIWFPI 173
>ref|XP_541299.2| PREDICTED: similar to RNA cyclase homolog [Canis familiaris].
Length = 477
Score = 93.2 bits (230), Expect = 3e-19
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 3/215 (1%)
Frame = +1
Query: 253 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCDGQLEGAEIGST 432
G LR LS L G P+++++IRA PGLR S + ++ + +G T
Sbjct: 116 GCNFLRQRQVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKVTNGSRIEINQTGT 175
Query: 433 EIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDY 612
+ + P + GG+ D S+ ++ + F P + L+G TN ++ P +D
Sbjct: 176 TLYYQPGLLYGGSVEHDCNVLRSIGYYLESLLCLAPFMKHPLRIVLRGVTNDQVDPSVDV 235
Query: 613 TAMVFKPIVEKFGF---TFNCDIKMRGYYPKGGGEVIVRMSPVKQLNPINLTDRGSVTKI 783
P++++FG +F + RG P GGGEV K L PI LTD G + +I
Sbjct: 236 LKATALPLLKQFGIDGESFELKVVRRGMPPGGGGEVFFSCPVRKVLKPIQLTDPGKIKRI 295
Query: 784 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
G A+ V P ++A + +A + K I D+Y+
Sbjct: 296 RGTAYSVRVSP-QMANRIVDSARSILNKFIPDIYI 329
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,433,737
Number of extensions: 1053706
Number of successful extensions: 5515
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5458
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230399.1| RNA 3'-terminal phosphate cyclase [Sus scrof... 484 e-137
Alignment gi|XP_001926472.1| PREDICTED: RNA 3'-terminal phosphate cyclase... 96 2e-20
>ref|NP_001230399.1| RNA 3'-terminal phosphate cyclase [Sus scrofa].
Length = 366
Score = 484 bits (1247), Expect = e-137
Identities = 242/243 (99%), Positives = 242/243 (99%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR
Sbjct: 1 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR
Sbjct: 61 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 120
Query: 568 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 747
LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP
Sbjct: 121 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 180
Query: 748 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 927
INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF
Sbjct: 181 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 240
Query: 928 ANG 936
NG
Sbjct: 241 GNG 243
>ref|XP_001926472.1| PREDICTED: RNA 3'-terminal phosphate cyclase-like protein [Sus
scrofa].
Length = 373
Score = 96.3 bits (238), Expect = 2e-20
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 3/215 (1%)
Frame = +1
Query: 253 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCDGQLEGAEIGST 432
G LR LS L G P++++KIRA PGLR S + ++ + +G T
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71
Query: 433 EIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDY 612
+ + P + GG+ D S+ ++ + F P + L+G TN ++ P +D
Sbjct: 72 TLYYQPGLLYGGSVEHDCSILRSIGYYLESLLCLAPFMKHPLRIVLRGVTNDQVDPSVDV 131
Query: 613 TAMVFKPIVEKFGF---TFNCDIKMRGYYPKGGGEVIVRMSPVKQLNPINLTDRGSVTKI 783
+ P++++FG +F I RG P GGGEV+ K L PI LTD G + +I
Sbjct: 132 LKVTALPLLKQFGIDGESFELKIVRRGMPPGGGGEVLFSCPVRKVLKPIQLTDPGKIKRI 191
Query: 784 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
G A+ V P ++A + +A + K I D+Y+
Sbjct: 192 RGMAYSVRVSP-QMANRIVDSARSILNKFIPDIYI 225
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,120,978
Number of extensions: 658269
Number of successful extensions: 3498
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3450
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079793.2| RNA 3'-terminal phosphate cyclase [Mus musculus]. 450 e-127
Alignment gi|NP_067500.1| RNA 3'-terminal phosphate cyclase-like protein ... 94 2e-19
>ref|NP_079793.2| RNA 3'-terminal phosphate cyclase [Mus musculus].
Length = 366
Score = 450 bits (1158), Expect = e-127
Identities = 225/243 (92%), Positives = 231/243 (95%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
M G RVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR
Sbjct: 1 MEGQRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLC G LEGAEIGSTEI FTPEKI+GG HTADTKTAGSVCLLMQVSMPCVLFAASPSELR
Sbjct: 61 DLCGGHLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 120
Query: 568 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 747
LKGGTNAEMAPQIDYT MVFKPI EKFGFTFNCDIK RGYYPKGGGEVIVR+SPVK+L+P
Sbjct: 121 LKGGTNAEMAPQIDYTMMVFKPIAEKFGFTFNCDIKTRGYYPKGGGEVIVRVSPVKRLDP 180
Query: 748 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 927
INLTDRGSVTKIYGRAFVAGVLP KVAKDMAAAAVRCIRKEIRDLYV+IQPVQE +DQAF
Sbjct: 181 INLTDRGSVTKIYGRAFVAGVLPLKVAKDMAAAAVRCIRKEIRDLYVSIQPVQEARDQAF 240
Query: 928 ANG 936
NG
Sbjct: 241 GNG 243
>ref|NP_067500.1| RNA 3'-terminal phosphate cyclase-like protein [Mus musculus].
Length = 373
Score = 94.0 bits (232), Expect = 2e-19
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 3/215 (1%)
Frame = +1
Query: 253 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCDGQLEGAEIGST 432
G LR LS L G P+++++IRA PGLR S + ++ + +G T
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71
Query: 433 EIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDY 612
+ + P + GG+ D + ++ + F P ++ L+G TN ++ P +D
Sbjct: 72 TLYYQPGLLYGGSVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVDV 131
Query: 613 TAMVFKPIVEKFGF---TFNCDIKMRGYYPKGGGEVIVRMSPVKQLNPINLTDRGSVTKI 783
P++++FG +F I RG P GGGEV+ K L P+ LTD G + +I
Sbjct: 132 LKATALPLLKQFGIDGESFELKILRRGMPPGGGGEVLFSCPVRKVLKPVQLTDPGKIKRI 191
Query: 784 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
G A+ V P ++A + +A + K I D+Y+
Sbjct: 192 RGMAYSVRVSP-QMANRIVDSARSILNKFIPDIYI 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,004,606
Number of extensions: 856918
Number of successful extensions: 4395
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4168
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003720.1| RNA 3'-terminal phosphate cyclase isoform b [Ho... 466 e-131
Alignment gi|NP_001124313.1| RNA 3'-terminal phosphate cyclase isoform a ... 456 e-128
Alignment gi|NP_005763.3| RNA 3'-terminal phosphate cyclase-like protein ... 95 8e-20
>ref|NP_003720.1| RNA 3'-terminal phosphate cyclase isoform b [Homo sapiens].
Length = 366
Score = 466 bits (1198), Expect = e-131
Identities = 232/243 (95%), Positives = 234/243 (96%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVR 387
MAGPRVEVDG IMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEM+R
Sbjct: 1 MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIR 60
Query: 388 DLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELR 567
DLCDGQLEGAEIGSTEI FTPEKIKGG HTADTKTAGSVCLLMQVSMPCVLFAASPSEL
Sbjct: 61 DLCDGQLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELH 120
Query: 568 LKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGEVIVRMSPVKQLNP 747
LKGGTNAEMAPQIDYT MVFKPIVEKFGF FNCDIK RGYYPKGGGEVIVRMSPVKQLNP
Sbjct: 121 LKGGTNAEMAPQIDYTVMVFKPIVEKFGFIFNCDIKTRGYYPKGGGEVIVRMSPVKQLNP 180
Query: 748 INLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 927
INLT+RG VTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF
Sbjct: 181 INLTERGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAF 240
Query: 928 ANG 936
NG
Sbjct: 241 GNG 243
>ref|NP_001124313.1| RNA 3'-terminal phosphate cyclase isoform a [Homo sapiens].
Length = 379
Score = 456 bits (1174), Expect = e-128
Identities = 232/256 (90%), Positives = 234/256 (91%), Gaps = 13/256 (5%)
Frame = +1
Query: 208 MAGPRVEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGL------------ 351
MAGPRVEVDG IMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGL
Sbjct: 1 MAGPRVEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLSSGGWKSKIKVL 60
Query: 352 -RPQHLSGLEMVRDLCDGQLEGAEIGSTEIMFTPEKIKGGTHTADTKTAGSVCLLMQVSM 528
RPQHLSGLEM+RDLCDGQLEGAEIGSTEI FTPEKIKGG HTADTKTAGSVCLLMQVSM
Sbjct: 61 TRPQHLSGLEMIRDLCDGQLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSM 120
Query: 529 PCVLFAASPSELRLKGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIKMRGYYPKGGGE 708
PCVLFAASPSEL LKGGTNAEMAPQIDYT MVFKPIVEKFGF FNCDIK RGYYPKGGGE
Sbjct: 121 PCVLFAASPSELHLKGGTNAEMAPQIDYTVMVFKPIVEKFGFIFNCDIKTRGYYPKGGGE 180
Query: 709 VIVRMSPVKQLNPINLTDRGSVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
VIVRMSPVKQLNPINLT+RG VTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV
Sbjct: 181 VIVRMSPVKQLNPINLTERGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 240
Query: 889 NIQPVQEPKDQAFANG 936
NIQPVQEPKDQAF NG
Sbjct: 241 NIQPVQEPKDQAFGNG 256
>ref|NP_005763.3| RNA 3'-terminal phosphate cyclase-like protein [Homo sapiens].
Length = 373
Score = 95.1 bits (235), Expect = 8e-20
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 3/215 (1%)
Frame = +1
Query: 253 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCDGQLEGAEIGST 432
G LR LS L G P++++KIRA PGLR S + ++ + +G T
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71
Query: 433 EIMFTPEKIKGGTHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQIDY 612
+ + P + GG+ D + ++ + F P ++ L+G TN ++ P +D
Sbjct: 72 TLYYQPGLLYGGSVEHDCSVLRGIGYYLESLLCLAPFMKHPLKIVLRGVTNDQVDPSVDV 131
Query: 613 TAMVFKPIVEKFGF---TFNCDIKMRGYYPKGGGEVIVRMSPVKQLNPINLTDRGSVTKI 783
P++++FG +F I RG P GGGEV+ K L PI LTD G + +I
Sbjct: 132 LKATALPLLKQFGIDGESFELKIVRRGMPPGGGGEVVFSCPVRKVLKPIQLTDPGKIKRI 191
Query: 784 YGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYV 888
G A+ V P ++A + +A + K I D+Y+
Sbjct: 192 RGMAYSVRVSP-QMANRIVDSARSILNKFIPDIYI 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,671,538
Number of extensions: 1031126
Number of successful extensions: 5127
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5060
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-015200
(936 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 502 e-139
>Sscrofa_Chr04
|| Length = 143465943
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 1 gtctgcgggctgccggcttctcggtgcggttcgccttccctgatccgggcgttccggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129503396 gtctgcgggctgccggcttctcggtgcggttcgccttccctgatccgggcgttccggcag 129503337
Query: 61 ccggccagtcttctctctttcggcggcgtcccgcggcctcgagtcaagactgagattccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129503336 ccggccagtcttctctctttcggcggcgtcccgcggcctcgagtcaagactgagattccg 129503277
Query: 121 gagctgcggggccggagcctgcttctccccttcctccggctcgggccgaggctgcgtcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129503276 gagctgcggggccggagcctgcttctccccttcctccggctcgggccgaggctgcgtcgc 129503217
Query: 181 ggtgggccaggccccagggcgactcccatggcggggccgcgggtggaggtggacggcggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129503216 ggtgggccaggccccagggcgactcccatggcggggccgcgggtggaggtggacggcggc 129503157
Query: 241 atcatggaagggg 253
|||||||||||||
Sbjct: 129503156 atcatggaagggg 129503144
Score = 291 bits (147), Expect = 3e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 352 aggcctcagcatttatctggactggaaatggttcgagatttgtgtgatgggcaactagag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129500731 aggcctcagcatttatctggactggaaatggttcgagatttgtgtgatgggcaactagag 129500672
Query: 412 ggggcagaaatcggctcaacagaaataatgtttacaccagagaagatcaaaggcggaacc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129500671 ggggcagaaatcggctcaacagaaataatgtttacaccagagaagatcaaaggcggaacc 129500612
Query: 472 cacaccgcagataccaagacagcaggg 498
|||||||||||||||||||||||||||
Sbjct: 129500611 cacaccgcagataccaagacagcaggg 129500585
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 497 ggagtgtgtgcctcttgatgcaggtgtcaatgccctgtgttctttttgctgcttctccat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129499358 ggagtgtgtgcctcttgatgcaggtgtcaatgccctgtgttctttttgctgcttctccat 129499299
Query: 557 cagaacttcgtttgaaaggtggaactaatgctgaaatggcaccacagattgactacacgg 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129499298 cagaacttcgtttgaaaggtggaactaatgctgaaatggcaccacagattgactacacgg 129499239
Query: 617 ccatggt 623
|||||||
Sbjct: 129499238 ccatggt 129499232
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 252 gggcgggcagatcctgagggtgtcgacggccttgagctgcctgctgggcctccccttgcg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129503053 gggcgggcagatcctgagggtgtcgacggccttgagctgcctgctgggcctccccttgcg 129502994
Query: 312 ggtgcagaagattcgagccggccgcagcacgcccggcctgagg 354
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129502993 ggtgcagaagattcgagccggccgcagcacgcccggcctgagg 129502951
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 679 aggggctactacccaaaagggggtggtgaagtgattgtccgaatgtcgccagttaaacag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129494208 aggggctactacccaaaagggggtggtgaagtgattgtccgaatgtcgccagttaaacag 129494149
Query: 739 ttgaacccaataaatttaactgaccgtggctctgtgact 777
|||||||||||||||||||||||||||||||||||||||
Sbjct: 129494148 ttgaacccaataaatttaactgaccgtggctctgtgact 129494110
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 621 ggttttcaagccaattgttgaaaaatttggtttcacatttaactgtgacattaaaatgag 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129496198 ggttttcaagccaattgttgaaaaatttggtttcacatttaactgtgacattaaaatgag 129496139
Query: 681 g 681
|
Sbjct: 129496138 g 129496138
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,372,748
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 6
Length of query: 936
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 915
Effective length of database: 2,808,413,156
Effective search space: 2569698037740
Effective search space used: 2569698037740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)